Query psy1228
Match_columns 202
No_of_seqs 198 out of 1355
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 23:16:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dat_A Possible global transcr 100.0 8.4E-33 2.9E-37 209.1 15.7 113 77-189 9-121 (123)
2 3mb4_A Protein polybromo-1; PB 100.0 5.9E-33 2E-37 210.2 14.6 114 76-189 10-123 (124)
3 2grc_A Probable global transcr 100.0 7.4E-32 2.5E-36 205.5 13.7 117 77-193 7-124 (129)
4 3ljw_A Protein polybromo-1; al 100.0 8.4E-32 2.9E-36 202.7 13.7 110 79-188 6-115 (120)
5 3k2j_A Protein polybromo-1; PB 100.0 8.8E-32 3E-36 205.3 13.9 117 74-190 10-126 (130)
6 3iu5_A Protein polybromo-1; PB 100.0 8.1E-32 2.8E-36 201.7 12.1 110 80-189 4-113 (116)
7 3tlp_A Protein polybromo-1; PB 100.0 7.5E-32 2.6E-36 210.3 11.8 116 82-197 25-141 (150)
8 3mqm_A Probable histone-lysine 100.0 1.4E-31 4.7E-36 203.2 12.8 111 79-189 7-117 (126)
9 3d7c_A General control of amin 100.0 6.5E-31 2.2E-35 195.6 14.3 107 78-190 4-110 (112)
10 3g0l_A Hwalp4, bromodomain adj 100.0 7.2E-31 2.5E-35 196.7 14.3 105 79-189 11-115 (117)
11 1e6i_A Transcriptional activat 100.0 1.2E-30 4.3E-35 196.6 10.9 103 81-189 13-115 (121)
12 2i7k_A Bromodomain-containing 100.0 4E-30 1.4E-34 192.8 13.5 107 78-190 5-111 (117)
13 2d9e_A Peregrin; four-helix bu 100.0 4.6E-30 1.6E-34 193.5 13.6 103 79-187 5-107 (121)
14 2yyn_A Transcription intermedi 100.0 7.4E-30 2.5E-34 195.8 14.8 109 77-192 16-126 (135)
15 4alg_A Bromodomain-containing 100.0 4.5E-30 1.5E-34 201.1 13.8 113 76-194 27-141 (154)
16 3mb3_A PH-interacting protein; 100.0 4.2E-30 1.4E-34 197.1 13.3 108 76-189 16-124 (135)
17 2oss_A HUNK1 protein, bromodom 100.0 1E-29 3.5E-34 193.1 15.3 106 78-189 18-125 (127)
18 3nxb_A CAT eye syndrome critic 100.0 3.3E-30 1.1E-34 192.8 11.5 101 80-186 15-115 (116)
19 3q2e_A Bromodomain and WD repe 100.0 1.1E-29 3.7E-34 192.0 13.0 108 78-191 7-115 (123)
20 3hme_A Bromodomain-containing 100.0 1.1E-29 3.6E-34 192.1 12.3 105 76-186 8-112 (123)
21 2ouo_A HUNK1 protein, bromodom 100.0 1E-29 3.5E-34 193.9 12.2 108 79-189 20-129 (130)
22 3jvl_A Bromodomain-containing 100.0 6.2E-30 2.1E-34 192.4 10.3 113 78-193 6-120 (120)
23 3p1f_A CREB-binding protein; s 100.0 2.6E-29 8.8E-34 188.8 12.9 107 76-188 6-115 (119)
24 3fkm_X Signaling protein; brom 100.0 4.3E-29 1.5E-33 197.8 13.5 109 74-188 14-124 (166)
25 3rcw_A Bromodomain-containing 100.0 6.8E-29 2.3E-33 190.3 13.6 104 78-187 10-113 (135)
26 3uv4_A Second bromodomain of h 100.0 3.4E-28 1.2E-32 191.1 11.6 105 83-188 27-131 (158)
27 2ri7_A Nucleosome-remodeling f 100.0 5.7E-28 1.9E-32 192.2 13.0 105 78-188 69-173 (174)
28 3o36_A Transcription intermedi 100.0 1.9E-27 6.6E-32 191.0 15.0 107 76-189 76-184 (184)
29 3dai_A ATPase family AAA domai 99.9 6.5E-27 2.2E-31 178.3 13.7 100 80-185 9-112 (130)
30 3uv5_A Transcription initiatio 99.9 1.8E-26 6.1E-31 195.1 12.9 103 79-187 12-114 (265)
31 3u5n_A E3 ubiquitin-protein li 99.9 9.4E-26 3.2E-30 184.3 13.7 108 77-191 77-204 (207)
32 2ro1_A Transcription intermedi 99.9 1E-25 3.5E-30 181.8 11.7 104 78-192 73-181 (189)
33 2dkw_A Hypothetical protein KI 99.9 1.8E-25 6.2E-30 170.5 11.7 96 79-185 10-109 (131)
34 3uv5_A Transcription initiatio 99.9 7.3E-25 2.5E-29 185.2 13.2 85 104-188 154-238 (265)
35 3iu6_A Protein polybromo-1; PB 99.9 2.2E-24 7.4E-29 166.3 13.3 108 78-189 4-111 (147)
36 3aad_A Transcription initiatio 99.9 2.7E-25 9.4E-30 190.2 8.7 101 80-186 46-146 (292)
37 2r0y_A Chromatin structure-rem 99.9 1.2E-24 4E-29 187.7 11.1 87 100-186 176-262 (311)
38 2r10_A Chromatin structure-rem 99.9 2.8E-24 9.4E-29 188.9 13.6 87 100-186 226-312 (361)
39 3aad_A Transcription initiatio 99.9 3.9E-24 1.3E-28 183.1 12.8 86 103-188 186-271 (292)
40 2r10_A Chromatin structure-rem 99.9 2.3E-23 7.9E-28 183.0 7.7 99 83-187 80-179 (361)
41 2r0y_A Chromatin structure-rem 99.9 3.4E-23 1.2E-27 178.6 8.2 102 80-187 27-129 (311)
42 3lqh_A Histone-lysine N-methyl 99.7 8.6E-17 2.9E-21 128.7 11.0 96 80-192 74-169 (183)
43 3kxe_C Antitoxin protein PARD- 51.0 17 0.00058 24.8 3.7 30 130-159 15-44 (88)
44 1j0w_A Downstream of tyrosine 48.7 7.1 0.00024 27.6 1.5 25 3-27 56-81 (103)
45 1xr0_B FGFR signalling adaptor 44.5 8.8 0.0003 28.3 1.5 25 3-27 59-84 (129)
46 1fr2_B Colicin E9; protein-pro 40.5 24 0.0008 26.1 3.3 32 131-162 36-67 (134)
47 2jb0_B Colicin E7; hydrolase/i 40.5 24 0.00081 26.0 3.3 32 131-162 33-64 (131)
48 2la0_A Uncharacterized protein 32.8 5.8 0.0002 21.0 -0.8 12 7-18 10-21 (30)
49 2kup_A Fibroblast growth facto 31.8 16 0.00053 27.5 1.1 33 3-35 66-105 (146)
50 2kuq_A Fibroblast growth facto 28.8 18 0.00063 27.3 1.1 32 3-34 66-104 (153)
51 1sj7_A Talin 1; structural pro 28.0 2E+02 0.007 22.0 7.9 59 130-198 96-156 (174)
52 2dlw_A Docking protein 2, isof 25.5 23 0.00078 25.4 1.0 25 3-27 63-88 (113)
53 1p5t_A DOK1, docking protein 1 23.4 32 0.0011 25.1 1.5 25 3-27 63-88 (127)
54 7cei_B Protein (colicin E7 imm 22.7 61 0.0021 25.4 3.0 36 126-162 104-139 (206)
55 2v76_A Docking protein 1; alte 22.7 34 0.0012 24.1 1.5 25 3-27 61-86 (107)
56 3b4s_A Protein LUXT; APC91483. 20.3 79 0.0027 21.8 2.9 39 146-184 35-73 (94)
No 1
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=8.4e-33 Score=209.10 Aligned_cols=113 Identities=34% Similarity=0.608 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy1228 77 LDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMF 156 (202)
Q Consensus 77 ~~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif 156 (202)
+.+..+++.|..|++.|+++++..|+.++++|..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||
T Consensus 9 ~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 9 PNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228 157 GNCREFNEPGSLIYEDAVNLEKVLLERVAELGP 189 (202)
Q Consensus 157 ~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~ 189 (202)
.||++||+++|.++.+|..|++.|++++++++.
T Consensus 89 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 89 HNAQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999998864
No 2
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=100.00 E-value=5.9e-33 Score=210.16 Aligned_cols=114 Identities=39% Similarity=0.690 Sum_probs=109.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy1228 76 YLDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLM 155 (202)
Q Consensus 76 ~~~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~li 155 (202)
.+...++++.|..|++.|.++.+..|++++++|..||++..+|+||++|++||||+||++||+++.|.++++|.+||+||
T Consensus 10 ~k~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li 89 (124)
T 3mb4_A 10 SKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMM 89 (124)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228 156 FGNCREFNEPGSLIYEDAVNLEKVLLERVAELGP 189 (202)
Q Consensus 156 f~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~ 189 (202)
|.||+.||+++|.++.+|..|++.|++.|+++..
T Consensus 90 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 90 FNNACTYNEPESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999854
No 3
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.98 E-value=7.4e-32 Score=205.48 Aligned_cols=117 Identities=33% Similarity=0.624 Sum_probs=109.5
Q ss_pred CCCHHHHHHHHHHHHHHhcccc-cCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy1228 77 LDNKPLKRRLYTLCKCLMDYRD-QDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLM 155 (202)
Q Consensus 77 ~~~~~l~~~l~~il~~l~~~~~-~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~li 155 (202)
+....|++.|..|++.|+++.+ ..|++++++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||+||
T Consensus 7 ~~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li 86 (129)
T 2grc_A 7 PNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 86 (129)
T ss_dssp CCCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3568899999999999999986 478999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy1228 156 FGNCREFNEPGSLIYEDAVNLEKVLLERVAELGPLPSG 193 (202)
Q Consensus 156 f~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~~~~~ 193 (202)
|.||++||+++|.++.+|..|++.|++.|+++....+.
T Consensus 87 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~~ 124 (129)
T 2grc_A 87 CQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDS 124 (129)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 99999999999999999999999999999988765443
No 4
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.98 E-value=8.4e-32 Score=202.75 Aligned_cols=110 Identities=35% Similarity=0.596 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy1228 79 NKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGN 158 (202)
Q Consensus 79 ~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~N 158 (202)
+..|++.|+.+++.|.++.+..||.++++|..||++..+|+||++|++||||+||++||+++.|.++++|.+||+|||.|
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 85 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKN 85 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy1228 159 CREFNEPGSLIYEDAVNLEKVLLERVAELG 188 (202)
Q Consensus 159 a~~YN~~~s~i~~~A~~L~~~f~~~~~~i~ 188 (202)
|+.||+++|.++.+|..|++.|++.|+++.
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~i~ 115 (120)
T 3ljw_A 86 AKTYNEPGSQVFKDANSIKKIFYMKKAEIE 115 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999875
No 5
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.98 E-value=8.8e-32 Score=205.33 Aligned_cols=117 Identities=32% Similarity=0.572 Sum_probs=110.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHH
Q psy1228 74 GKYLDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFR 153 (202)
Q Consensus 74 ~~~~~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~ 153 (202)
+.......+..+|..+++.|.++.+..|++++++|..||++..+|+||++|++||||+||++||+++.|.++++|.+||+
T Consensus 10 ~~~~~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~ 89 (130)
T 3k2j_A 10 GVDLGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLN 89 (130)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 33445788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q psy1228 154 LMFGNCREFNEPGSLIYEDAVNLEKVLLERVAELGPL 190 (202)
Q Consensus 154 lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~~ 190 (202)
|||.||++||+++|.++.+|..|++.|++.|+++...
T Consensus 90 Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 90 LMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999987543
No 6
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.97 E-value=8.1e-32 Score=201.66 Aligned_cols=110 Identities=28% Similarity=0.532 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy1228 80 KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNC 159 (202)
Q Consensus 80 ~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na 159 (202)
....+.|..|++.|+++++..|++++++|..||++..+|+||++|++||||+||++||+++.|.++++|.+||+|||.||
T Consensus 4 ~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 83 (116)
T 3iu5_A 4 VDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNA 83 (116)
T ss_dssp CCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228 160 REFNEPGSLIYEDAVNLEKVLLERVAELGP 189 (202)
Q Consensus 160 ~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~ 189 (202)
..||+++|.++.+|..|++.|++.++++..
T Consensus 84 ~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 84 KSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998855
No 7
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.97 E-value=7.5e-32 Score=210.30 Aligned_cols=116 Identities=44% Similarity=0.783 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHhcccc-cCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy1228 82 LKRRLYTLCKCLMDYRD-QDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCR 160 (202)
Q Consensus 82 l~~~l~~il~~l~~~~~-~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~ 160 (202)
-.++|+.|++.|.++.+ ..|+.++++|..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||+
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 104 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNAR 104 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 47899999999999985 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCccch
Q psy1228 161 EFNEPGSLIYEDAVNLEKVLLERVAELGPLPSGEDFF 197 (202)
Q Consensus 161 ~YN~~~s~i~~~A~~L~~~f~~~~~~i~~~~~~~~~~ 197 (202)
.||+++|.++.+|..|++.|++.|+++.+.+++++.-
T Consensus 105 ~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~d~~~ 141 (150)
T 3tlp_A 105 HYNEEGSQVYNDAHILEKLLKEKRKELGPLPDDDDMA 141 (150)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHCCC-------
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHccCCCChhhcC
Confidence 9999999999999999999999999999999887643
No 8
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.97 E-value=1.4e-31 Score=203.16 Aligned_cols=111 Identities=22% Similarity=0.406 Sum_probs=107.0
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy1228 79 NKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGN 158 (202)
Q Consensus 79 ~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~N 158 (202)
...+++.|+.|++.|.++.+..|+.++++|..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.|
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 86 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRN 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228 159 CREFNEPGSLIYEDAVNLEKVLLERVAELGP 189 (202)
Q Consensus 159 a~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~ 189 (202)
|..||+++|.++.+|..|++.|++.++++.+
T Consensus 87 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 117 (126)
T 3mqm_A 87 AEKYYGRKSPVGRDVCRLRKAYYNARHEASA 117 (126)
T ss_dssp HHHHHCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987654
No 9
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.97 E-value=6.5e-31 Score=195.60 Aligned_cols=107 Identities=28% Similarity=0.441 Sum_probs=102.8
Q ss_pred CCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy1228 78 DNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFG 157 (202)
Q Consensus 78 ~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~ 157 (202)
....|...|..|++.|.++.. +++|..||++..+|+||++|++||||+||++||++|.|.++++|.+||+|||.
T Consensus 4 ~~~~l~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~ 77 (112)
T 3d7c_A 4 DPDQLYTTLKNLLAQIKSHPS------AWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIA 77 (112)
T ss_dssp SHHHHHHHHHHHHHHHHHSGG------GGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCC------chhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 357889999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q psy1228 158 NCREFNEPGSLIYEDAVNLEKVLLERVAELGPL 190 (202)
Q Consensus 158 Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~~ 190 (202)
||+.||+++|.++.+|..|++.|++.|++++..
T Consensus 78 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~ 110 (112)
T 3d7c_A 78 NCREYNPPDSEYCRCASALEKFFYFKLKEGGLI 110 (112)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999999999998764
No 10
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.97 E-value=7.2e-31 Score=196.73 Aligned_cols=105 Identities=25% Similarity=0.349 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy1228 79 NKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGN 158 (202)
Q Consensus 79 ~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~N 158 (202)
.....+.|..|++.|.++.. +++|..||++..+||||++|++||||+||++||++|.|.++++|.+||+|||.|
T Consensus 11 ~~~~~~~c~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 84 (117)
T 3g0l_A 11 DSKDLALCSMILTEMETHED------AWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDN 84 (117)
T ss_dssp CTTHHHHHHHHHHHHHTSTT------CGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCC------chhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 44568899999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228 159 CREFNEPGSLIYEDAVNLEKVLLERVAELGP 189 (202)
Q Consensus 159 a~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~ 189 (202)
|..||+++|.++.+|..|++.|++.|+++..
T Consensus 85 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 85 CETFNEDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp HHHHSCSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999998864
No 11
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.97 E-value=1.2e-30 Score=196.64 Aligned_cols=103 Identities=27% Similarity=0.532 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy1228 81 PLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCR 160 (202)
Q Consensus 81 ~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~ 160 (202)
+....|..|++.|.++.. +++|..||++..+|+||++|++||||+||++||++|.|.++++|.+||+|||.||+
T Consensus 13 ~~~~~~~~il~~l~~~~~------a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 86 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHAA------AWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCR 86 (121)
T ss_dssp TTHHHHHHHHHHHHHSTT------CGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC------chhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 347889999999999886 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228 161 EFNEPGSLIYEDAVNLEKVLLERVAELGP 189 (202)
Q Consensus 161 ~YN~~~s~i~~~A~~L~~~f~~~~~~i~~ 189 (202)
+||+++|.++.+|..|++.|++++++++.
T Consensus 87 ~yN~~~s~i~~~A~~L~~~f~~~~~~~p~ 115 (121)
T 1e6i_A 87 MYNGENTSYYKYANRLEKFFNNKVKEIPE 115 (121)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHTSGG
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999998753
No 12
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.97 E-value=4e-30 Score=192.80 Aligned_cols=107 Identities=25% Similarity=0.414 Sum_probs=101.7
Q ss_pred CCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy1228 78 DNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFG 157 (202)
Q Consensus 78 ~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~ 157 (202)
...+++..|..|++.|.++.. +++|..||++..+||||++|++||||+||++||++|.|.++++|.+||+|||.
T Consensus 5 ~~~~l~~~l~~il~~L~~~~~------~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~ 78 (117)
T 2i7k_A 5 EQTPLQEALNQLMRQLQRKDP------SAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCT 78 (117)
T ss_dssp THHHHHHHHHHHHHHHHTSSG------GGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcc------cHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 357889999999999999887 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q psy1228 158 NCREFNEPGSLIYEDAVNLEKVLLERVAELGPL 190 (202)
Q Consensus 158 Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~~ 190 (202)
||++||+++|.++.+|..|++.|++.++.....
T Consensus 79 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 111 (117)
T 2i7k_A 79 NAMIYNKPETIYYKAAKKLLHSGMKILSQERLE 111 (117)
T ss_dssp HHHHTSCSSSSHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987653
No 13
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.97 E-value=4.6e-30 Score=193.55 Aligned_cols=103 Identities=22% Similarity=0.362 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy1228 79 NKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGN 158 (202)
Q Consensus 79 ~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~N 158 (202)
..++...|..|++.|+++.. +++|..||++..+|+||++|++||||+||++||+++.|.++++|.+||+|||.|
T Consensus 5 ~~pl~~~l~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 78 (121)
T 2d9e_A 5 SSGFLILLRKTLEQLQEKDT------GNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSN 78 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHCS------SCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCc------cHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999887 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1228 159 CREFNEPGSLIYEDAVNLEKVLLERVAEL 187 (202)
Q Consensus 159 a~~YN~~~s~i~~~A~~L~~~f~~~~~~i 187 (202)
|++||+++|.++.+|..|++.|++.|+++
T Consensus 79 a~~yN~~~s~~~~~A~~L~~~~~~~l~~~ 107 (121)
T 2d9e_A 79 CLKYNAKDTIFYRAAVRLREQGGAVLRQA 107 (121)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998765
No 14
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.97 E-value=7.4e-30 Score=195.82 Aligned_cols=109 Identities=32% Similarity=0.511 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhc--CCCCCHHHHHHHHHH
Q psy1228 77 LDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQN--EKYRSQDEILSDFRL 154 (202)
Q Consensus 77 ~~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~--~~Y~s~~eF~~Dv~l 154 (202)
.......+.|..|+..|+++.. +++|..||+. .+|+||++|++||||+||++||++ +.|.++++|.+||+|
T Consensus 16 ~m~p~~~~~c~~il~~L~~~~~------s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~L 88 (135)
T 2yyn_A 16 KLTPIDKRKCERLLLFLYCHEM------SLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRL 88 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHTSGG------GGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCcc------chhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHH
Confidence 4567778999999999999887 9999999987 799999999999999999999998 599999999999999
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy1228 155 MFGNCREFNEPGSLIYEDAVNLEKVLLERVAELGPLPS 192 (202)
Q Consensus 155 if~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~~~~ 192 (202)
||.||++||+++|.++.+|..|++.|+++|+++.+...
T Consensus 89 if~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~ 126 (135)
T 2yyn_A 89 IFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEKR 126 (135)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999999999999987654
No 15
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.97 E-value=4.5e-30 Score=201.12 Aligned_cols=113 Identities=30% Similarity=0.387 Sum_probs=106.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCC--CCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHH
Q psy1228 76 YLDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAK--IYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFR 153 (202)
Q Consensus 76 ~~~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~--~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~ 153 (202)
......++..|..|++.|.++.. +++|..||++. .+||||++|++||||+||++||+++.|.++++|.+||+
T Consensus 27 ~r~t~~l~~~~~~il~~l~~~~~------a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~ 100 (154)
T 4alg_A 27 GRVTNQLQYLHKVVMKALWKHQF------AWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFN 100 (154)
T ss_dssp CCCBHHHHHHHHTHHHHHHTSTT------CGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhCcC------chhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34578899999999999999887 99999999987 69999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCc
Q psy1228 154 LMFGNCREFNEPGSLIYEDAVNLEKVLLERVAELGPLPSGE 194 (202)
Q Consensus 154 lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~~~~~~ 194 (202)
|||.||++||++++.++.+|..|++.|+++|++++....+.
T Consensus 101 Lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~e~ 141 (154)
T 4alg_A 101 TMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQEL 141 (154)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSSCCBC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCchhccc
Confidence 99999999999999999999999999999999998776554
No 16
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.97 E-value=4.2e-30 Score=197.11 Aligned_cols=108 Identities=22% Similarity=0.410 Sum_probs=102.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy1228 76 YLDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLM 155 (202)
Q Consensus 76 ~~~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~li 155 (202)
......|++.|..|++.|.++.. +++|..||++..+||||++|++||||+||++||++|.|.++++|.+||+||
T Consensus 16 ~~~~~~l~~~~~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li 89 (135)
T 3mb3_A 16 SYDIQAWKKQCEELLNLIFQCED------SEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLI 89 (135)
T ss_dssp -CCSSTHHHHHHHHHHHHHHSGG------GGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCC------ChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 33467899999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCC-CCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228 156 FGNCREFNEP-GSLIYEDAVNLEKVLLERVAELGP 189 (202)
Q Consensus 156 f~Na~~YN~~-~s~i~~~A~~L~~~f~~~~~~i~~ 189 (202)
|.||..||++ +|.++.+|..|++.|++.|+++.+
T Consensus 90 ~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~ 124 (135)
T 3mb3_A 90 FSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLS 124 (135)
T ss_dssp HHHHHHHSCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 999999999999999999987643
No 17
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.97 E-value=1e-29 Score=193.12 Aligned_cols=106 Identities=34% Similarity=0.533 Sum_probs=100.5
Q ss_pred CCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCC--CCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy1228 78 DNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAK--IYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLM 155 (202)
Q Consensus 78 ~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~--~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~li 155 (202)
....|+..|..|++.|+++.. +++|..||+.. .+||||++|++||||+||++||++|.|.++++|.+||+||
T Consensus 18 ~~~~l~~~~~~il~~L~~~~~------a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li 91 (127)
T 2oss_A 18 QTNQLQYLLRVVLKTLWKHQF------AWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTM 91 (127)
T ss_dssp CCHHHHHHHHTHHHHHHTSTT------CGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhCcc------chhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 467889999999999999886 99999999964 7999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228 156 FGNCREFNEPGSLIYEDAVNLEKVLLERVAELGP 189 (202)
Q Consensus 156 f~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~ 189 (202)
|+||++||+++|.++.+|..|++.|++.|++++.
T Consensus 92 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 125 (127)
T 2oss_A 92 FTNCYIYNKPGDDIVLMAEALEKLFLQKINELPT 125 (127)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999998864
No 18
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.97 E-value=3.3e-30 Score=192.81 Aligned_cols=101 Identities=25% Similarity=0.487 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy1228 80 KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNC 159 (202)
Q Consensus 80 ~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na 159 (202)
.++.+.|..+++.|.++.+ +++|..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||
T Consensus 15 ~~~~~~~~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 88 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKD------SWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNC 88 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTT------CGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC------cHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 4468899999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHH
Q psy1228 160 REFNEPGSLIYEDAVNLEKVLLERVAE 186 (202)
Q Consensus 160 ~~YN~~~s~i~~~A~~L~~~f~~~~~~ 186 (202)
..||+++|.++.+|..|++.|++.|.+
T Consensus 89 ~~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 89 RKYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999875
No 19
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=191.97 Aligned_cols=108 Identities=21% Similarity=0.381 Sum_probs=101.0
Q ss_pred CCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy1228 78 DNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFG 157 (202)
Q Consensus 78 ~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~ 157 (202)
....|+++|..|++.|.++.. +++|..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.
T Consensus 7 ~~~~~~~~c~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 80 (123)
T 3q2e_A 7 VESNWKKQCKELVNLIFQCED------SEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFS 80 (123)
T ss_dssp ---CHHHHHHHHHHHHHTSGG------GGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCC------cHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCC-CCHHHHHHHHHHHHHHHHHHHhCCCC
Q psy1228 158 NCREFNEP-GSLIYEDAVNLEKVLLERVAELGPLP 191 (202)
Q Consensus 158 Na~~YN~~-~s~i~~~A~~L~~~f~~~~~~i~~~~ 191 (202)
||..||++ +|.++.+|..|++.|++.|+++.+..
T Consensus 81 Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 115 (123)
T 3q2e_A 81 NAKAYTPNKRSKIYSMTLRLSALFEEKMKKISSDF 115 (123)
T ss_dssp HHHHHSCCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999996 99999999999999999999886543
No 20
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=192.06 Aligned_cols=105 Identities=23% Similarity=0.385 Sum_probs=98.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy1228 76 YLDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLM 155 (202)
Q Consensus 76 ~~~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~li 155 (202)
.....++++.|..|++.|.++.. +++|..||++..+||||++|++||||+||++||++|.|.++++|.+||+||
T Consensus 8 e~~~~p~~~~l~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li 81 (123)
T 3hme_A 8 ENESTPIQQLLEHFLRQLQRKDP------HGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLM 81 (123)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCT------TCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhCCc------cHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 34457789999999999999887 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHHHHHH
Q psy1228 156 FGNCREFNEPGSLIYEDAVNLEKVLLERVAE 186 (202)
Q Consensus 156 f~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~ 186 (202)
|.||..||+++|.++.+|..|++.|.+.|.+
T Consensus 82 ~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 82 CDNAMTYNRPDTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998864
No 21
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.96 E-value=1e-29 Score=193.86 Aligned_cols=108 Identities=25% Similarity=0.396 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCC--CCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy1228 79 NKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAK--IYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMF 156 (202)
Q Consensus 79 ~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~--~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif 156 (202)
.....+.|..|++.|+++++ ..++++|..||++. .+||||++|++||||+||++||++|.|.++++|.+||+|||
T Consensus 20 ~~~~l~~c~~il~~L~~~~~---~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~ 96 (130)
T 2ouo_A 20 VSEQLKCCSGILKEMFAKKH---AAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMF 96 (130)
T ss_dssp HHHHHHHHHHHHHHHTSGGG---HHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCc---chhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34556789999999998763 23589999999986 49999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228 157 GNCREFNEPGSLIYEDAVNLEKVLLERVAELGP 189 (202)
Q Consensus 157 ~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~ 189 (202)
.||++||+++|.++.+|..|++.|+++|++++.
T Consensus 97 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 97 SNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999998864
No 22
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.96 E-value=6.2e-30 Score=192.45 Aligned_cols=113 Identities=25% Similarity=0.405 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCC--CchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy1228 78 DNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKI--YPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLM 155 (202)
Q Consensus 78 ~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~--~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~li 155 (202)
......+.|..|++.|.++.. ..++++|..||++.. +||||++|++||||+||++||+++.|.++++|.+||+||
T Consensus 6 ~~~~~l~~c~~il~~l~~~~~---~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li 82 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKKH---AAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLM 82 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGGG---HHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcC---ccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 345668889999999998764 344899999999987 999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy1228 156 FGNCREFNEPGSLIYEDAVNLEKVLLERVAELGPLPSG 193 (202)
Q Consensus 156 f~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~~~~~ 193 (202)
|.||.+||+++|.++.+|..|++.|++.|++++..++|
T Consensus 83 ~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~~~~E 120 (120)
T 3jvl_A 83 FSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPEE 120 (120)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC----
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence 99999999999999999999999999999999876653
No 23
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.96 E-value=2.6e-29 Score=188.78 Aligned_cols=107 Identities=21% Similarity=0.407 Sum_probs=99.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcc-cccCCCcccccCccCCCCC--CCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHH
Q psy1228 76 YLDNKPLKRRLYTLCKCLMDY-RDQDGRQPMLMFMELPSAK--IYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDF 152 (202)
Q Consensus 76 ~~~~~~l~~~l~~il~~l~~~-~~~~~~~~~~~F~~pv~~~--~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv 152 (202)
......+.+.|..+++.|.+. .. +++|..||++. ++||||++|++||||+||++||++|.|.++++|.+||
T Consensus 6 ~~~~~el~~~l~~~l~~l~~~~~~------s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~ 79 (119)
T 3p1f_A 6 IFKPEELRQALMPTLEALYRQDPE------SLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDV 79 (119)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCTTT------TGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCC------CchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHH
Confidence 345688999999999999874 45 99999999987 7999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy1228 153 RLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAELG 188 (202)
Q Consensus 153 ~lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~ 188 (202)
+|||+||..||+++|.++.+|..|++.|++.++++.
T Consensus 80 ~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 115 (119)
T 3p1f_A 80 WLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVM 115 (119)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998764
No 24
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.96 E-value=4.3e-29 Score=197.80 Aligned_cols=109 Identities=27% Similarity=0.458 Sum_probs=99.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCC--CCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHH
Q psy1228 74 GKYLDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAK--IYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSD 151 (202)
Q Consensus 74 ~~~~~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~--~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~D 151 (202)
+..+....|...|..|++.|+++.. +++|..||++. .+|+||++|++||||+||++||+++.|.++++|.+|
T Consensus 14 ~~~p~~~~~~~~~~~il~~L~~~~~------s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D 87 (166)
T 3fkm_X 14 LYFQGNKQWYLLANQLILSLSKYEG------GHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKD 87 (166)
T ss_dssp ---CTTHHHHHHHHHHHHHHTTSTT------GGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHhCCC------ChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHH
Confidence 3455789999999999999999987 99999999965 699999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy1228 152 FRLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAELG 188 (202)
Q Consensus 152 v~lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~ 188 (202)
|+|||.||++||+++|.++.+|..|++.|++.|+++.
T Consensus 88 v~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 88 VQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHHHHHHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999998865
No 25
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.96 E-value=6.8e-29 Score=190.35 Aligned_cols=104 Identities=25% Similarity=0.417 Sum_probs=100.0
Q ss_pred CCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy1228 78 DNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFG 157 (202)
Q Consensus 78 ~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~ 157 (202)
...++...|..+++.|.++.. +++|..||++..+||||++|++||||+||++||++|.|.++++|.+||+|||.
T Consensus 10 ~~~~l~~~l~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 83 (135)
T 3rcw_A 10 RLTPLTVLLRSVLDQLQDKDP------ARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIID 83 (135)
T ss_dssp CCCHHHHHHHHHHHHHHHTCT------TCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCc------chhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 356799999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1228 158 NCREFNEPGSLIYEDAVNLEKVLLERVAEL 187 (202)
Q Consensus 158 Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i 187 (202)
||+.||+++|.++.+|..|++.|.+.|+++
T Consensus 84 Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~ 113 (135)
T 3rcw_A 84 NCMKYNARDTVFYRAAVRLRDQGGVVLRQA 113 (135)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999865
No 26
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.95 E-value=3.4e-28 Score=191.12 Aligned_cols=105 Identities=25% Similarity=0.406 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy1228 83 KRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREF 162 (202)
Q Consensus 83 ~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~Y 162 (202)
...|..||+.+...+- ..++.+++|..||++..+|+||++|++||||+||++||+++.|.++++|.+||+|||.||++|
T Consensus 27 ~~~l~~iL~~i~~~kl-~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~y 105 (158)
T 3uv4_A 27 QVAFSFILDNIVTQKM-MAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKY 105 (158)
T ss_dssp HHHHHHHHHHHHHHTT-TTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5555555555554321 123349999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy1228 163 NEPGSLIYEDAVNLEKVLLERVAELG 188 (202)
Q Consensus 163 N~~~s~i~~~A~~L~~~f~~~~~~i~ 188 (202)
|+++|.++.+|..|.+.|.+.|+++.
T Consensus 106 N~~~s~i~~~A~~L~~~~~~~l~e~~ 131 (158)
T 3uv4_A 106 NGPESQYTKTAQEIVNVCYQTLTEYD 131 (158)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 27
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.95 E-value=5.7e-28 Score=192.24 Aligned_cols=105 Identities=26% Similarity=0.444 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy1228 78 DNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFG 157 (202)
Q Consensus 78 ~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~ 157 (202)
......+.|..||+.|.++.. +++|..||++..+|+||++|++||||+||++||+++.|.++++|.+||+|||+
T Consensus 69 l~~~~~~~l~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 142 (174)
T 2ri7_A 69 LTEKDYEGLKRVLRSLQAHKM------AWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFD 142 (174)
T ss_dssp CCHHHHHHHHHHHHHHHTSGG------GTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhh------hhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 456778899999999999886 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy1228 158 NCREFNEPGSLIYEDAVNLEKVLLERVAELG 188 (202)
Q Consensus 158 Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~ 188 (202)
||++||+++|.++.+|..|++.|+++|+++.
T Consensus 143 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 143 NCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998764
No 28
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.95 E-value=1.9e-27 Score=190.95 Aligned_cols=107 Identities=33% Similarity=0.529 Sum_probs=101.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhc--CCCCCHHHHHHHHH
Q psy1228 76 YLDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQN--EKYRSQDEILSDFR 153 (202)
Q Consensus 76 ~~~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~--~~Y~s~~eF~~Dv~ 153 (202)
......+++.|+.||..|.++.. +++|..||+. .+|+||++|++||||+||++||++ +.|.++++|.+||+
T Consensus 76 ~~l~~~~~~~c~~il~~l~~~~~------s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~ 148 (184)
T 3o36_A 76 VKLTPIDKRKCERLLLFLYCHEM------SLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFR 148 (184)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSTT------CHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhchh------hhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 34678889999999999999987 9999999985 589999999999999999999998 79999999999999
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228 154 LMFGNCREFNEPGSLIYEDAVNLEKVLLERVAELGP 189 (202)
Q Consensus 154 lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~ 189 (202)
|||+||++||+++|.++.+|..|++.|+++|+++.|
T Consensus 149 li~~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 149 LIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYP 184 (184)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999876
No 29
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.95 E-value=6.5e-27 Score=178.30 Aligned_cols=100 Identities=24% Similarity=0.328 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy1228 80 KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNC 159 (202)
Q Consensus 80 ~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na 159 (202)
..++..|..+++.|.+++. +++|..||++..+||||++|++||||+||++||++|.|.++++|.+||+|||.||
T Consensus 9 ~~l~~~l~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 82 (130)
T 3dai_A 9 RELRIFLRNVTHRLAIDKR------FRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNA 82 (130)
T ss_dssp HHHHHHHHHHHHHHHTSGG------GGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCc------cHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 4577888999999998887 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHH----HHHHHHHHHHHHHHHH
Q psy1228 160 REFNEPGSLI----YEDAVNLEKVLLERVA 185 (202)
Q Consensus 160 ~~YN~~~s~i----~~~A~~L~~~f~~~~~ 185 (202)
..||+++|++ +..|..|++.+...++
T Consensus 83 ~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 83 LEYNPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp HHHCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999866 7889999999998886
No 30
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.94 E-value=1.8e-26 Score=195.13 Aligned_cols=103 Identities=21% Similarity=0.372 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy1228 79 NKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGN 158 (202)
Q Consensus 79 ~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~N 158 (202)
...|...|..|++.|.++.. +++|..||++..+||||++|++||||+||++||++|.|.++++|.+||+|||+|
T Consensus 12 ~~~l~~~l~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (265)
T 3uv5_A 12 MVTLSSILESIINDMRDLPN------TYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKN 85 (265)
T ss_dssp HHHHHHHHHHHHHHHHTSTT------CGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC------chhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhh
Confidence 56899999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1228 159 CREFNEPGSLIYEDAVNLEKVLLERVAEL 187 (202)
Q Consensus 159 a~~YN~~~s~i~~~A~~L~~~f~~~~~~i 187 (202)
|.+||+++|.++.+|..|.+.|++.|+++
T Consensus 86 a~~yN~~~s~i~~~A~~l~~~~~~~~~~~ 114 (265)
T 3uv5_A 86 SATYNGPKHSLTQISQSMLDLCDEKLKEK 114 (265)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998764
No 31
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.93 E-value=9.4e-26 Score=184.30 Aligned_cols=108 Identities=26% Similarity=0.421 Sum_probs=101.7
Q ss_pred CCCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhc---CCCCCHHHHHHHHH
Q psy1228 77 LDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQN---EKYRSQDEILSDFR 153 (202)
Q Consensus 77 ~~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~---~~Y~s~~eF~~Dv~ 153 (202)
......++.|..|+..|.++.. +++|..||+. .+|+||++|++||||+||++||++ +.|.++++|.+||+
T Consensus 77 ~ls~~~~~~c~~il~~l~~~~~------s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~ 149 (207)
T 3u5n_A 77 GLSPVDQRKCERLLLYLYCHEL------SIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVR 149 (207)
T ss_dssp SSCHHHHHHHHHHHHHHHTSTT------CGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhccc------hhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHH
Confidence 3567779999999999999886 9999999987 799999999999999999999997 79999999999999
Q ss_pred HHHHHHhhhCC-----------------CCCHHHHHHHHHHHHHHHHHHHhCCCC
Q psy1228 154 LMFGNCREFNE-----------------PGSLIYEDAVNLEKVLLERVAELGPLP 191 (202)
Q Consensus 154 lif~Na~~YN~-----------------~~s~i~~~A~~L~~~f~~~~~~i~~~~ 191 (202)
|||+||++||+ +++.++++|..|+..|+++|+++.|..
T Consensus 150 li~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~~ 204 (207)
T 3u5n_A 150 LIFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSDR 204 (207)
T ss_dssp HHHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999 999999999999999999999998864
No 32
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.93 E-value=1e-25 Score=181.82 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcC--CCCcHHHHHHHHhcC---CCCCHHHHHHHH
Q psy1228 78 DNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIK--QPIDMCQIESNIQNE---KYRSQDEILSDF 152 (202)
Q Consensus 78 ~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk--~PMdL~tIk~kl~~~---~Y~s~~eF~~Dv 152 (202)
....-+..|..||+.|..+.. ++||.+||+ |+||++|+ +||||+||++||+++ .|.++++|++||
T Consensus 73 m~~~~~~~c~~iL~~l~~~~~------s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv 142 (189)
T 2ro1_A 73 LSPANQRKCERVLLALFCHEP------CRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDV 142 (189)
T ss_dssp SCHHHHHHHHHHHHHHHHSTT------HHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcccCcc------chhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHH
Confidence 455567889999999999886 999999998 78999998 899999999999999 999999999999
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy1228 153 RLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAELGPLPS 192 (202)
Q Consensus 153 ~lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~~~~ 192 (202)
+|||+||++|| +++.++.+|..|++.|+++|+++++...
T Consensus 143 ~Lif~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~~ 181 (189)
T 2ro1_A 143 GRMFKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGDTK 181 (189)
T ss_dssp HHHHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999 5888999999999999999999987644
No 33
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=170.54 Aligned_cols=96 Identities=24% Similarity=0.391 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy1228 79 NKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGN 158 (202)
Q Consensus 79 ~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~N 158 (202)
...|+..|..|++.|.+++. +++|..| +||||++|++||||+||++||+++.|.++++|.+||+|||.|
T Consensus 10 ~~~L~~~~~~il~~l~~~~~------~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~N 78 (131)
T 2dkw_A 10 LRELRLFLRDVTKRLATDKR------FNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSN 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHHSGG------GCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcc------chhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 56788899999999999887 9999998 899999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCH----HHHHHHHHHHHHHHHHH
Q psy1228 159 CREFNEPGSL----IYEDAVNLEKVLLERVA 185 (202)
Q Consensus 159 a~~YN~~~s~----i~~~A~~L~~~f~~~~~ 185 (202)
|+.||+++|+ ++..|..|++.|...++
T Consensus 79 a~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 79 ALEYNPDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp HHHSCCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999995 67899999999998885
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.92 E-value=7.3e-25 Score=185.22 Aligned_cols=85 Identities=31% Similarity=0.523 Sum_probs=82.6
Q ss_pred ccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q psy1228 104 PMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLER 183 (202)
Q Consensus 104 ~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~~~s~i~~~A~~L~~~f~~~ 183 (202)
.+++|..||++..+||||++|++||||+||++||++|.|.++++|.+||+|||.||+.||+++|.++.+|..|++.|.+.
T Consensus 154 ~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~~~~~ 233 (265)
T 3uv5_A 154 DSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQT 233 (265)
T ss_dssp TCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q psy1228 184 VAELG 188 (202)
Q Consensus 184 ~~~i~ 188 (202)
|+++.
T Consensus 234 ~~~~~ 238 (265)
T 3uv5_A 234 LTEYD 238 (265)
T ss_dssp HHHTH
T ss_pred HHHHH
Confidence 98764
No 35
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.92 E-value=2.2e-24 Score=166.33 Aligned_cols=108 Identities=26% Similarity=0.412 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy1228 78 DNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFG 157 (202)
Q Consensus 78 ~~~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~ 157 (202)
+...++..+..|++.|+++.++.||.++.+|++.|++. |+||. ++||+|.+|++||+.|.|.++++|..||.+||.
T Consensus 4 v~~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~ 79 (147)
T 3iu6_A 4 VTLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLE 79 (147)
T ss_dssp CCCHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999988 89998 999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy1228 158 NCREFNEPGSLIYEDAVNLEKVLLERVAELGP 189 (202)
Q Consensus 158 Na~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~ 189 (202)
||.+||.+||+||.+|..|+++|.+...++..
T Consensus 80 NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~ 111 (147)
T 3iu6_A 80 RARRMNRTDSEIYEDAVELQQFFIKIRDELCK 111 (147)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999987643
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.92 E-value=2.7e-25 Score=190.25 Aligned_cols=101 Identities=22% Similarity=0.394 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy1228 80 KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNC 159 (202)
Q Consensus 80 ~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na 159 (202)
..+...|..|++.|+++.. +++|..||++..+||||++|++||||+||++||+++.|.++.+|.+||+|||+||
T Consensus 46 ~~l~~~~~~il~~l~~~~~------a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na 119 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPN------TYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNS 119 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTT------CGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCc------chhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHH
Confidence 5678899999999999887 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHH
Q psy1228 160 REFNEPGSLIYEDAVNLEKVLLERVAE 186 (202)
Q Consensus 160 ~~YN~~~s~i~~~A~~L~~~f~~~~~~ 186 (202)
.+||+++|.++.+|..|.+.|++.|++
T Consensus 120 ~~yN~~~s~i~~~A~~L~~~~~~~~~~ 146 (292)
T 3aad_A 120 ATYNGPKHSLTQISQSMLDLCDEKLKE 146 (292)
T ss_dssp HHHTCSSSHHHHHHTHHHHTTTTTGGG
T ss_pred HHHcCCchHHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999887764
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.91 E-value=1.2e-24 Score=187.74 Aligned_cols=87 Identities=29% Similarity=0.538 Sum_probs=84.7
Q ss_pred CCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q psy1228 100 DGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKV 179 (202)
Q Consensus 100 ~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~~~s~i~~~A~~L~~~ 179 (202)
.+|.++++|..||++..+|+||++|++||||+||++||+++.|.++++|.+||+|||+||++||+++|.++.+|..|++.
T Consensus 176 ~~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 255 (311)
T 2r0y_A 176 DKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 255 (311)
T ss_dssp CSSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred cCCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1228 180 LLERVAE 186 (202)
Q Consensus 180 f~~~~~~ 186 (202)
|++++++
T Consensus 256 f~~~~~~ 262 (311)
T 2r0y_A 256 FNYLIQK 262 (311)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.91 E-value=2.8e-24 Score=188.91 Aligned_cols=87 Identities=29% Similarity=0.538 Sum_probs=84.7
Q ss_pred CCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q psy1228 100 DGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKV 179 (202)
Q Consensus 100 ~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~~~s~i~~~A~~L~~~ 179 (202)
.++.++++|..||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||+++|.|+.+|..|++.
T Consensus 226 ~~~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 226 DKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp CSSCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred cCCcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy1228 180 LLERVAE 186 (202)
Q Consensus 180 f~~~~~~ 186 (202)
|+++|++
T Consensus 306 f~~~~~~ 312 (361)
T 2r10_A 306 FNYLIQK 312 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
No 39
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.91 E-value=3.9e-24 Score=183.08 Aligned_cols=86 Identities=30% Similarity=0.516 Sum_probs=82.8
Q ss_pred cccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHH
Q psy1228 103 QPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLE 182 (202)
Q Consensus 103 ~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~~~s~i~~~A~~L~~~f~~ 182 (202)
..+++|..||++..+||||++|++||||+||++||++|.|.++++|.+||+|||.||+.||+++|.++.+|..|++.|++
T Consensus 186 ~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~~~~ 265 (292)
T 3aad_A 186 PDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQ 265 (292)
T ss_dssp TTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred cchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC
Q psy1228 183 RVAELG 188 (202)
Q Consensus 183 ~~~~i~ 188 (202)
.++++.
T Consensus 266 ~~~~~~ 271 (292)
T 3aad_A 266 TLTEYD 271 (292)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 40
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.88 E-value=2.3e-23 Score=183.04 Aligned_cols=99 Identities=28% Similarity=0.463 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHhh
Q psy1228 83 KRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYR-SQDEILSDFRLMFGNCRE 161 (202)
Q Consensus 83 ~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~-s~~eF~~Dv~lif~Na~~ 161 (202)
...|..+++.+.+ .++.++++|+.||++..+||||++|++||||+||++|| +.|. ++++|.+||+|||.||+.
T Consensus 80 ~~~~~~~l~~l~~----~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~ 153 (361)
T 2r10_A 80 NRFISFTLDVLID----KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQA 153 (361)
T ss_dssp HHHHHHHHHHHHH----HTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhh
Confidence 4455555555543 55678999999999999999999999999999999998 5555 899999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1228 162 FNEPGSLIYEDAVNLEKVLLERVAEL 187 (202)
Q Consensus 162 YN~~~s~i~~~A~~L~~~f~~~~~~i 187 (202)
||+++|.|+.+|..|+++|++.|.+.
T Consensus 154 yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 154 YNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998765
No 41
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.88 E-value=3.4e-23 Score=178.61 Aligned_cols=102 Identities=27% Similarity=0.452 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCC-CHHHHHHHHHHHHHH
Q psy1228 80 KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYR-SQDEILSDFRLMFGN 158 (202)
Q Consensus 80 ~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~-s~~eF~~Dv~lif~N 158 (202)
+.+...+..+|+.+.+ .++.++++|+.||++..+||||++|++||||+||++|| +.|. ++++|.+||+|||.|
T Consensus 27 p~~~~~~~~~L~~~~~----~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~N 100 (311)
T 2r0y_A 27 PKFNRFISFTLDVLID----KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKN 100 (311)
T ss_dssp TTHHHHHHHHHHHHHH----HSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH----cCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHH
Confidence 3456666666666663 56788999999999999999999999999999999998 5665 899999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy1228 159 CREFNEPGSLIYEDAVNLEKVLLERVAEL 187 (202)
Q Consensus 159 a~~YN~~~s~i~~~A~~L~~~f~~~~~~i 187 (202)
|++||+++|.|+.+|..|++.|++.|.+.
T Consensus 101 a~~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 101 CQAYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999998765
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.70 E-value=8.6e-17 Score=128.71 Aligned_cols=96 Identities=16% Similarity=0.215 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHhcccccCCCcccccCccCCCCCCCchhhhhcCCCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy1228 80 KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNC 159 (202)
Q Consensus 80 ~~l~~~l~~il~~l~~~~~~~~~~~~~~F~~pv~~~~~pdY~~iIk~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na 159 (202)
..++..+..|++.|.+++. ++||+.. .++.||||.+|++||++|.|.++.+|+.||.+||.||
T Consensus 74 ~el~~~l~~vl~~L~~~~~------s~~~~~y-----------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~ 136 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRT------TSHLLRY-----------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAA 136 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHH------HHHHHTC-----------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccc------cHhhhhh-----------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 5567778889999998887 9999773 2599999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy1228 160 REFNEPGSLIYEDAVNLEKVLLERVAELGPLPS 192 (202)
Q Consensus 160 ~~YN~~~s~i~~~A~~L~~~f~~~~~~i~~~~~ 192 (202)
..+|.+.+.+.+++..|+.+|++++++++|...
T Consensus 137 ~~~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~ 169 (183)
T 3lqh_A 137 INSDGGQPEIKKANSMVKSFFIRQMERVFPWFS 169 (183)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred hhccCCChhhhhhhhHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999999999999998754
No 43
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=51.04 E-value=17 Score=24.78 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy1228 130 MCQIESNIQNEKYRSQDEILSDFRLMFGNC 159 (202)
Q Consensus 130 L~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na 159 (202)
..-|...+..|.|.|..|+++|.-..+..-
T Consensus 15 ~~~i~~~V~sG~Y~s~SEviR~~lR~l~~r 44 (88)
T 3kxe_C 15 QAFIDSQVADGRYGSASEVIRAGLRLLEEN 44 (88)
T ss_dssp HHHHHHHHTTTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999977766653
No 44
>1j0w_A Downstream of tyrosine kinase 5; beta strands, ALFA helix, transferase; 2.50A {Homo sapiens} SCOP: b.55.1.2
Probab=48.70 E-value=7.1 Score=27.57 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=20.9
Q ss_pred CCCCccccc-cCcccccCceeeeeeh
Q psy1228 3 GFEPGTFCM-ASKRVTTGQTVFYYYI 27 (202)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~~~~~ 27 (202)
|..+|.||+ ||.|..+|.-+|++.+
T Consensus 56 G~~~~~FsFEaGRrC~tG~G~f~F~~ 81 (103)
T 1j0w_A 56 GRDTTWFTFEAGRMCETGEGLFIFQT 81 (103)
T ss_dssp EECSSEEEEEECSSSSSCSEEEEEEC
T ss_pred CccCCEEEEEeCCCCCCCCcEEEEEc
Confidence 677899999 8888888999988764
No 45
>1xr0_B FGFR signalling adaptor SNT-1; phosphotyrosine binding domain, PTB, TRK, NPXPY motif,, signaling protein/growth factor receptor complex; NMR {Homo sapiens} SCOP: b.55.1.2
Probab=44.50 E-value=8.8 Score=28.29 Aligned_cols=25 Identities=28% Similarity=0.694 Sum_probs=20.9
Q ss_pred CCCCccccc-cCcccccCceeeeeeh
Q psy1228 3 GFEPGTFCM-ASKRVTTGQTVFYYYI 27 (202)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~~~~~ 27 (202)
|..+|.||. ||.|..+|.-+|++.+
T Consensus 59 G~d~~~FsFEaGRRC~tGeGiF~F~t 84 (129)
T 1xr0_B 59 GYDSNLFSFESGRRCQTGQGIFAFKC 84 (129)
T ss_dssp EECSSEEEEEECSCSTTCSEEEEEEC
T ss_pred CccCCEEEEEcCCCCCCCCcEEEEEc
Confidence 667899998 8888888999998864
No 46
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=40.55 E-value=24 Score=26.13 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy1228 131 CQIESNIQNEKYRSQDEILSDFRLMFGNCREF 162 (202)
Q Consensus 131 ~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~Y 162 (202)
+.|.+||+..++.++++|...+++-+.|--.+
T Consensus 36 ~~IAdkLRGr~F~sFd~FR~afW~eVs~DpeL 67 (134)
T 1fr2_B 36 DRIADKLRDKEFKSFDDFRKAVWEEVSKDPEL 67 (134)
T ss_dssp HHHHHHHTTCEESSHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHhcCCcCCCHHHHHHHHHHHHhcCHHH
Confidence 68999999999999999999999988876544
No 47
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=40.53 E-value=24 Score=26.01 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy1228 131 CQIESNIQNEKYRSQDEILSDFRLMFGNCREF 162 (202)
Q Consensus 131 ~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~Y 162 (202)
+.|.+||+..++.++++|...+++-+.|.-.+
T Consensus 33 ~qIAdkLRGr~F~sFd~FR~afW~eVs~DpeL 64 (131)
T 2jb0_B 33 DRIANKLRDKEFKSFDDFRKKFWEEVSKDPEL 64 (131)
T ss_dssp HHHHHHHTTCEESSHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHcCCcCCCHHHHHHHHHHHHhcCHHH
Confidence 78999999999999999999999988876544
No 48
>2la0_A Uncharacterized protein; thioether bridges, helical loops, crosslinked, post-translat modified, antimicrobial protein; HET: DTY; NMR {Bacillus cereus 95}
Probab=32.79 E-value=5.8 Score=20.96 Aligned_cols=12 Identities=58% Similarity=0.855 Sum_probs=9.5
Q ss_pred ccccccCccccc
Q psy1228 7 GTFCMASKRVTT 18 (202)
Q Consensus 7 ~~~~~~~~~~~~ 18 (202)
||.|.|+|-|-+
T Consensus 10 gtvclasggvgt 21 (30)
T 2la0_A 10 GTVCLASGGVGT 21 (30)
T ss_dssp HHHHHHTTTSCH
T ss_pred ccEEEecCCccc
Confidence 789999987743
No 49
>2kup_A Fibroblast growth factor receptor substrate 3; complex, SNT-2, PTB domain, HALK, structural genomics, signa protein, NPPSFA; NMR {Homo sapiens} PDB: 2ys5_A
Probab=31.79 E-value=16 Score=27.52 Aligned_cols=33 Identities=30% Similarity=0.657 Sum_probs=25.0
Q ss_pred CCCCccccc-cCcccccCceeeeee------hhhhccccc
Q psy1228 3 GFEPGTFCM-ASKRVTTGQTVFYYY------IFKVLDREG 35 (202)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~d~~g 35 (202)
|...|.|++ ||.|..+|.-+|++. ||..++..-
T Consensus 66 G~d~~~FsFEaGRrC~tGeGiF~F~t~~~e~If~~l~~~i 105 (146)
T 2kup_A 66 GYDSNLFSFESGRRCQTGQGIFAFKCSRAEEIFNLLQDLM 105 (146)
T ss_dssp EEETTEEEEEECTTSSSCSEEEEEECTTHHHHHHHHHHHH
T ss_pred CccCCEEEEEcCCCCCCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 566789999 888888899999875 566665543
No 50
>2kuq_A Fibroblast growth factor receptor substrate 3, LI residue peptide from ALK tyrosine...; chimera, SNT-2, PTB domain, HALK, structural genomics; NMR {Homo sapiens} PDB: 2yt2_A
Probab=28.83 E-value=18 Score=27.32 Aligned_cols=32 Identities=31% Similarity=0.714 Sum_probs=24.4
Q ss_pred CCCCccccc-cCcccccCceeeeee------hhhhcccc
Q psy1228 3 GFEPGTFCM-ASKRVTTGQTVFYYY------IFKVLDRE 34 (202)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~d~~ 34 (202)
|..++.|++ ||.|..+|.-+|++. ||..++..
T Consensus 66 G~d~~~FsFEaGRRC~tGeGiF~F~t~~~e~If~~l~~~ 104 (153)
T 2kuq_A 66 GYDSNLFSFESGRRCQTGQGIFAFKCSRAEEIFNLLQDL 104 (153)
T ss_dssp EEETTEEEEEECTTSTTCSEEEEEECTTHHHHHHHHHHH
T ss_pred CccCCEEEEECCCCCCCCCcEEEEEcCCHHHHHHHHHHH
Confidence 566789998 888888899999876 45556543
No 51
>1sj7_A Talin 1; structural protein; 2.50A {Mus musculus} SCOP: a.215.1.1
Probab=27.95 E-value=2e+02 Score=21.97 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Q psy1228 130 MCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNE--PGSLIYEDAVNLEKVLLERVAELGPLPSGEDFFI 198 (202)
Q Consensus 130 L~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~YN~--~~s~i~~~A~~L~~~f~~~~~~i~~~~~~~~~~~ 198 (202)
+.||-.+| .|.-++|++| .|+.-+. .+..+-.+|+.|-..|.++++...|..++....+
T Consensus 96 ittI~SNl--------~em~k~vk~l--aAL~~de~~~g~~Ll~Aar~L~~A~s~lLk~~~p~~~~~rq~l 156 (174)
T 1sj7_A 96 VTTISSNL--------TEMSRGVKLL--AALLEDEGGNGRPLLQAAKGLAGAVSELLRSAQPASAEPRQNL 156 (174)
T ss_dssp HHHHHHHH--------HHHHHHHHHH--HHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTCTTCCCCHHHH
T ss_pred HHHHHhhh--------HHHHHHHHHH--HhhccCCccccHHHHHHHHHHHHHHHHHHhccCCcccchHHHH
Confidence 56777665 6788888887 4554454 5667999999999999999999888887765544
No 52
>2dlw_A Docking protein 2, isoform A; IRS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.45 E-value=23 Score=25.36 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=20.7
Q ss_pred CCCCccccc-cCcccccCceeeeeeh
Q psy1228 3 GFEPGTFCM-ASKRVTTGQTVFYYYI 27 (202)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~~~~~ 27 (202)
|...+.||+ ||.|..+|.-+|.+.+
T Consensus 63 G~d~~~FsfEaGRrC~tGeG~f~F~t 88 (113)
T 2dlw_A 63 GRDKVTFSFEAGRRCVSGEGNFEFET 88 (113)
T ss_dssp EEETTEEEEEECSSCSSCSEEEEECC
T ss_pred CccCCEEEEEecCCCCCCCCEEEEEc
Confidence 566789999 8888999999988764
No 53
>1p5t_A DOK1, docking protein 1; signaling protein; 2.35A {Mus musculus} SCOP: b.55.1.2 PDB: 1uef_A*
Probab=23.39 E-value=32 Score=25.13 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=20.1
Q ss_pred CCCCccccc-cCcccccCceeeeeeh
Q psy1228 3 GFEPGTFCM-ASKRVTTGQTVFYYYI 27 (202)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~~~~~ 27 (202)
|..-+.||+ ||.|..+|.-+|.+.+
T Consensus 63 G~d~~~FsFEaGRrC~tGeG~f~F~t 88 (127)
T 1p5t_A 63 GRDKVMFSFEAGRRCPSGPGTFTFQT 88 (127)
T ss_dssp EECSSEEEEEECTTSTTCSEEEEEEC
T ss_pred CccCCEEEEEecCCCCCCCcEEEEEe
Confidence 566789999 8888888888888753
No 54
>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1
Probab=22.70 E-value=61 Score=25.45 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=29.6
Q ss_pred CCCcHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy1228 126 QPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREF 162 (202)
Q Consensus 126 ~PMdL~tIk~kl~~~~Y~s~~eF~~Dv~lif~Na~~Y 162 (202)
-|| =+.|..||+...+.++++|...+++-+.|.-.+
T Consensus 104 API-PsqIADKLRGR~F~sFD~FR~AFWkeVa~DPeL 139 (206)
T 7cei_B 104 SPV-PDRIANKLRDKEFKSFDDFRKKFWEEVSKDPEL 139 (206)
T ss_dssp BCC-BHHHHHHHTTCBCSSHHHHHHHHHHHHTTCTTT
T ss_pred CCC-CHHHHHHhcCCcCCCHHHHHHHHHHHHccCHHH
Confidence 344 278999999999999999999999888774433
No 55
>2v76_A Docking protein 1; alternative splicing, protein-binding, PTB domain, phosphorylation, adaptor protein; HET: PGE; 1.60A {Homo sapiens}
Probab=22.68 E-value=34 Score=24.14 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=19.9
Q ss_pred CCCCccccc-cCcccccCceeeeeeh
Q psy1228 3 GFEPGTFCM-ASKRVTTGQTVFYYYI 27 (202)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~~~~~ 27 (202)
|..-+.||+ ||.|..+|.-+|.+.+
T Consensus 61 G~d~~~FsFEaGRrc~tG~G~f~F~~ 86 (107)
T 2v76_A 61 GRDKVMFSFEAGRRCPSGPGTFTFQT 86 (107)
T ss_dssp EECSSEEEEEECTTSTTCSEEEEEEC
T ss_pred CccCCEEEEEecCCCCCCCcEEEEEe
Confidence 566789999 7778888888888754
No 56
>3b4s_A Protein LUXT; APC91483.1, LUXT domain, structural genomics, PSI-2, protein structure initiative; 3.10A {Vibrio parahaemolyticus rimd 2210633}
Probab=20.28 E-value=79 Score=21.79 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q psy1228 146 DEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERV 184 (202)
Q Consensus 146 ~eF~~Dv~lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~ 184 (202)
.+|.+=++|+|+|...+..+....++.-.++.+.....+
T Consensus 35 ~eF~aIlrL~F~hi~~~~~~~~f~~~~i~~l~~~~~~~~ 73 (94)
T 3b4s_A 35 SEFLAILRLLFHHIVTSESAHEFAANGIDRLYKMVESQF 73 (94)
T ss_dssp HHHHHHHHHHHHHHHHSCCHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCccHHHHhHHHHHHHHHHHHh
Confidence 569999999999999887654444444445555444443
Done!