RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1228
         (202 letters)



>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase
           bromodomain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 118

 Score = 88.6 bits (219), Expect = 1e-23
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 14/127 (11%)

Query: 62  ASTSKSPRALTRGKYLDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYY 121
           +  SK PR        D   L   L ++ + +  ++          FME       P YY
Sbjct: 2   SHMSKEPR--------DPDQLYSTLKSILQQVKSHQS------AWPFMEPVKRTEAPGYY 47

Query: 122 KVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLL 181
           +VI+ P+D+  +   ++N  Y S+   ++D + +F NC+E+N P S  Y+ A  LEK   
Sbjct: 48  EVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFF 107

Query: 182 ERVAELG 188
            ++ E G
Sbjct: 108 SKIKEAG 114


>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 139

 Score = 88.5 bits (219), Expect = 3e-23
 Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 11/117 (9%)

Query: 79  NKPLKRR-------LYTLCKCLMDY-RDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDM 130
           +K + RR       L ++ + +++  RD     P   F    +AK+  +YYK+I +P+D+
Sbjct: 13  HKSIHRRRTDPMVTLSSILESIINDMRDLPNTYP---FHTPVNAKVVKDYYKIITRPMDL 69

Query: 131 CQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAEL 187
             +  N++   Y S++E      L+  N   +N P   + + + ++  +  E++ E 
Sbjct: 70  QTLRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEK 126


>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 128

 Score = 85.4 bits (211), Expect = 3e-22
 Identities = 26/80 (32%), Positives = 40/80 (50%)

Query: 108 FMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDEILSDFRLMFGNCREFNEPGS 167
           F    + K  P+YYKVI  P+D+  I  NI   KY+S++  L D  L+  N  ++N P S
Sbjct: 31  FHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 90

Query: 168 LIYEDAVNLEKVLLERVAEL 187
              + A  +  V  + + E 
Sbjct: 91  QYTKTAQEIVNVCYQTLTEY 110


>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 111

 Score = 83.1 bits (205), Expect = 1e-21
 Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 80  KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQN 139
            P    +  +   L ++           F++  + +  P+YY  IK+P+D+  +E  +++
Sbjct: 2   GPHDAAIQNILTELQNHAA------AWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLES 55

Query: 140 EKYRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAEL 187
            KY+  ++ + D RL+F NCR +N   +  Y+ A  LEK    +V E+
Sbjct: 56  NKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEI 103


>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 102

 Score = 81.6 bits (201), Expect = 5e-21
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 1/99 (1%)

Query: 89  LCKCLMDYRDQDGRQPM-LMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEKYRSQDE 147
           L   L +   Q    P    FME       P+YY+VI+ PID+  +   +++  Y ++  
Sbjct: 3   LYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKL 62

Query: 148 ILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAE 186
            ++D + +  NCRE+N P S     A  LEK    ++ E
Sbjct: 63  FVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLKE 101


>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 114

 Score = 81.2 bits (200), Expect = 9e-21
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 3/106 (2%)

Query: 82  LKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVIKQPIDMCQIESNIQNEK 141
           L++ L    + L     QD           P     P+Y+ ++K P+D+  I+  +   +
Sbjct: 7   LRQALMPTLEALYR---QDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQ 63

Query: 142 YRSQDEILSDFRLMFGNCREFNEPGSLIYEDAVNLEKVLLERVAEL 187
           Y+   + + D  LMF N   +N   S +Y+    L +V  + +  +
Sbjct: 64  YQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPV 109


>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 117

 Score = 25.4 bits (56), Expect = 3.1
 Identities = 11/37 (29%), Positives = 15/37 (40%)

Query: 166 GSLIYEDAVNLEKVLLERVAELGPLPSGEDFFILLFT 202
             L  +    + + +L  VA  G LP    FFI   T
Sbjct: 7   DILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLT 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0540    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 757,126
Number of extensions: 33795
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 10
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)