BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12280
(758 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 296 bits (758), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 227/653 (34%), Positives = 337/653 (51%), Gaps = 95/653 (14%)
Query: 125 NTFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEF 184
+ F L+GK F+ILSG+IHYFRV PE W L L+A+G NTVETY+AWNLHEP + + F
Sbjct: 8 DDFYLDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHF 67
Query: 185 GDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYL 244
D+D KF++IAQ+ L+ I+RP P+ICAEW+FGG+P++LL + +++RS DP Y+
Sbjct: 68 ---EGDLDLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWLLTK-NMRIRSSDPAYI 123
Query: 245 NRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNVADKNYMRELVAMLRSNGI 304
V +Y++ L+P L P +G G I+M+ VENE G DK Y+R + ++ G+
Sbjct: 124 EAVGRYYDQLLPRLVPRLLDNG-GNILMMQVENEYGSYG---EDKAYLRAIRQLMEECGV 179
Query: 305 RSPLFTADDP--SMGDSGSLIEDVLYAANILYAGEELRKLSYMQ-------PNKPLMVME 355
PLFT+D P + +G+LIE+ L+ + + S MQ PLM ME
Sbjct: 180 TCPLFTSDGPWRATLKAGTLIEEDLFVTGN-FGSKAPYNFSQMQEFFDEHGKKWPLMCME 238
Query: 356 WWTGWFDTWAKNRHNTFPTNEYEMTLQSLLEYPVSLNLFMFHGGTSWGFYNGANIDKSLD 415
+W GWF+ W K T E ++ +LE S+NL+MFHGGT++GF NG + +LD
Sbjct: 239 FWDGWFNRW-KEPIITRDPKELADAVREVLE-QGSINLYMFHGGTNFGFMNGCSARGTLD 296
Query: 416 KYTPDTTSYDYDAPLTEGGDYTAKYWITRKYFLQVAQNLNISHPTPPEVLPKMAYDNVEL 475
P TSYDYDA L E G+ TAKY +K +A + + P M D + L
Sbjct: 297 --LPQVTSYDYDALLDEEGNPTAKYLAVKK---MMATHFSEYPQLEPLYKESMELDAIPL 351
Query: 476 GQQLTWHNLVSQI--PLEKIVVSPSLIP--MEDLAVNNGTGQSFGYTLYR-QPDWHIPTD 530
++++ + + P+E SL P ME+L GQS+GY LYR + +W +
Sbjct: 352 VEKVSLFETLDSLSSPVE------SLYPQKMEEL------GQSYGYLLYRTETNWD--AE 397
Query: 531 QDAIMRIEGRVADIAIVMVNQERQTVPLSDVQDLNEFGFWKTENAELLLNITRPANNIDI 590
++ + I+GR D A + V+ Q V ++ E F++ + L + +DI
Sbjct: 398 EERLRIIDGR--DRAQLYVDG--QWVKTQYQTEIGEDIFYQGKKKGL--------SRLDI 445
Query: 591 LVENTGRVNYWLNDDFKYSNIKKGL--GTSFDNVVTVNNAR-------PQKIWLIYALEF 641
L+EN GRVNY F +KG+ G D +N P+KI +F
Sbjct: 446 LIENMGRVNY--GHKFLADTQRKGIRTGVCKDLHFLLNWKHYPLPLDNPEKI------DF 497
Query: 642 EQDWVNGLSKFESVTSERNLPSPTLFQAIXXXXXXXXXXXXXXXMQDWTRGVVFVNGFNL 701
+ W G F + P T + ++ +GV FVNG NL
Sbjct: 498 SKGWTQGQPAFYAYDFTVEEPKDTYLD-----------------LSEFGKGVAFVNGQNL 540
Query: 702 GRYSRLSPYQTLYLPAPLLHLGQNKISVFE---HYRRAARLSFTDKPIVRNFQ 751
GR+ + P +LY+P L G N+I +FE Y+ L T KP +++ +
Sbjct: 541 GRFWNVGPTLSLYIPHSYLKEGANRIIIFETEGQYKEEIHL--TRKPTLKHIK 591
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 270 bits (689), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 222/675 (32%), Positives = 322/675 (47%), Gaps = 93/675 (13%)
Query: 111 KNKENTGLQYDDNPNTFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYI 170
+N + D + ++FL +G+ FR +SGSIHY RV YW+DRL K++ G N ++TY+
Sbjct: 2 RNATQRMFEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYV 61
Query: 171 AWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLR 230
WN HEP Y+F +++ D+++ F+++A E L VI+RPGPYICAEW+ GG+P++LL
Sbjct: 62 PWNFHEPWPGQYQFSEDH-DVEY--FLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLE 118
Query: 231 EPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNVADKN 290
+ I LRS DP YL V ++ L+P ++PL + +G GP+I + VENE D +
Sbjct: 119 KESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNG-GPVITVQVENEYGSY--FACDFD 175
Query: 291 YMRELVAMLRSN-GIRSPLFTADDP--SMGDSGSL-----IEDVLYAANILYAGEELRKL 342
Y+R L R + G LFT D + G+L D +NI A RK
Sbjct: 176 YLRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRK- 234
Query: 343 SYMQPNKPLMVMEWWTGWFDTWAKNRHNTFPTNEYEMTLQSLLEYPVSLNLFMFHGGTSW 402
+P PL+ E++TGW D W + H+T T +L +L S+NL+MF GGT++
Sbjct: 235 --CEPKGPLINSEFYTGWLDHWGQ-PHSTIKTEAVASSLYDILARGASVNLYMFIGGTNF 291
Query: 403 GFYNGANIDKSLDKYTPDTTSYDYDAPLTEGGDYTAKYWITR---KYFLQVAQNLNISHP 459
++NGAN Y TSYDYDAPL+E GD T KY+ R + F +V + P
Sbjct: 292 AYWNGAN-----SPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEG-----P 341
Query: 460 TPPEVLPKMAYDNVELGQQLTWHN----LVSQIPLEKIVVSPSLIPMEDLAVNNGTGQSF 515
PP PK AY V L + T L P++ SL P+ + V Q +
Sbjct: 342 IPPST-PKFAYGKVTLEKLKTVGAALDILCPSGPIK------SLYPLTFIQVK----QHY 390
Query: 516 GYTLYRQPDWHIPTDQDAIMRIEGRVADIAIVMVNQERQTVPLSDVQDLNEFGFWKTENA 575
G+ LYR ++ + V D A V V+ Q V N
Sbjct: 391 GFVLYRTTLPQDCSNPAPLSSPLNGVHDRAYVAVDGIPQGV--------------LERNN 436
Query: 576 ELLLNITRPAN-NIDILVENTGRVNYWLNDDFKYSNIKKGLGTSFDNVVTVNNARPQKIW 634
+ LNIT A +D+LVEN GRVNY Y N KGL N+ +N W
Sbjct: 437 VITLNITGKAGATLDLLVENMGRVNY-----GAYINDFKGL---VSNLTLSSNILTD--W 486
Query: 635 LIYALEFE---QDWVNGLSKFES-------VTSERNLPSPTLFQAIXXXXXXXXXXXXXX 684
I+ L+ E + + G +S + N P +
Sbjct: 487 TIFPLDTEDAVRSHLGGWGHRDSGHHDEAWAHNSSNYTLPAFYMGNFSIPSGIPDLPQDT 546
Query: 685 XMQ--DWTRGVVFVNGFNLGRY-SRLSPYQTLYLPAPLLHLGQ-NKISVFE--------H 732
+Q WT+G V++NGFNLGRY P TL++P +L N I+V E
Sbjct: 547 FIQFPGWTKGQVWINGFNLGRYWPARGPQLTLFVPQHILMTSAPNTITVLELEWAPCSSD 606
Query: 733 YRRAARLSFTDKPIV 747
++F D+P++
Sbjct: 607 DPELCAVTFVDRPVI 621
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 269 bits (688), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 189/619 (30%), Positives = 295/619 (47%), Gaps = 61/619 (9%)
Query: 120 YDDNPNTFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLK 179
++ NTFLLNG+ F + + IHY R+ EYW R++ +A+G NT+ Y+ WN HEP +
Sbjct: 8 FEVGKNTFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPEE 67
Query: 180 DVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSM 239
Y+F D F ++AQE +VI+RPGPY+CAEW+ GG+P +LL++ IKLR
Sbjct: 68 GRYDFAGQK---DIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLKKKDIKLREQ 124
Query: 240 DPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNVADKNYMRELVAML 299
DP Y RV+ + N + L LQ G G II + VENE G DK Y+ E+ +
Sbjct: 125 DPYYXERVKLFLNEVGKQLADLQISKG-GNIIXVQVENEYGAFG---IDKPYISEIRDXV 180
Query: 300 RSNGIRS-PLFTADDPSMGDSGSLIEDVLYAANILYAG---EELRKLSYMQPNKPLMVME 355
+ G PLF D S ++ +L +D+L+ N E+ ++L ++P+ PL E
Sbjct: 181 KQAGFTGVPLFQCDWNSNFENNAL-DDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSE 239
Query: 356 WWTGWFDTWAKNRHNTFPTNEYEMTLQSLLEYPVSLNLFMFHGGTSWGFYNGANIDKSLD 415
+W+GWFD W +H T E + L+ +S +L+ HGGTS+G + GAN
Sbjct: 240 FWSGWFDHWGA-KHETRSAEELVKGXKEXLDRNISFSLYXTHGGTSFGHWGGAN----FP 294
Query: 416 KYTPDTTSYDYDAPLTEGGDYTAKYWITRKY---FLQVAQNLNISHPTPPEVLPKMAYDN 472
++P TSYDYDAP+ E G T KY R +L + L P P+ +P +A
Sbjct: 295 NFSPTCTSYDYDAPINESGKVTPKYLEVRNLLGNYLPEGETL----PEIPDSIPTIAIPT 350
Query: 473 VELGQQLTWHNLVSQIPLEKIVVSPSLIPMEDLAVNNGTGQSFGYTLYRQPDWHIPTDQD 532
++ + L +P K ED+ Q +G LYR +D++
Sbjct: 351 IKXTEXAV---LFDNLPHPK--------ESEDIRTXEAFDQGWGSILYRTS--LSASDKE 397
Query: 533 AIMRIEGRVADIAIVMVNQERQTVPLSDVQDLNEFGFWKTENAELLLNITRPANNIDILV 592
+ I D A V +N ++ L+ + L G K L + + +DILV
Sbjct: 398 QTLLIT-EAHDWAQVFLNGKK----LATLSRLKGEGVVK-------LPPLKEGDRLDILV 445
Query: 593 ENTGRVNYWLNDDFKYSNIKKGLGTSFDNVVTVNNARPQKIWLIYALEFEQDWVNGLSKF 652
E GR N+ + + I + + D V + K W +Y + + +
Sbjct: 446 EAXGRXNF-GKGIYDWKGITEKVELQSDKGVEL-----VKDWQVYTIPVDYSFARDKQYK 499
Query: 653 ESVTSERNLPSPTLFQAIXXXXXXXXXXXXXXXMQDWTRGVVFVNGFNLGRYSRLSPYQT 712
+ +E P +++ +W++G V+VNG +GRY + P QT
Sbjct: 500 QQENAEN---QPAYYRST---FNLNELGDTFLNXXNWSKGXVWVNGHAIGRYWEIGPQQT 553
Query: 713 LYLPAPLLHLGQNKISVFE 731
LY+P L G+N+I + +
Sbjct: 554 LYVPGCWLKKGENEIIILD 572
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 148/337 (43%), Gaps = 45/337 (13%)
Query: 125 NTFLLNGKEFRILSGSIHYFRV-RPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYE 183
++ +NG+ I SG +H +R+ + D K++A+G N V Y+ W L E Y
Sbjct: 11 HSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGNPGHYS 70
Query: 184 FGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKY 243
D F A+E ++++ RPGPYI AE GG P +L R GI LR+ D Y
Sbjct: 71 ---AEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGI-LRTSDEAY 126
Query: 244 LNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENEL--AVLGPN-VADKNYMRELVAMLR 300
L Y +N+ + Q +G GPII+ ENE A G N D +YM+ + R
Sbjct: 127 LKATDNYASNIAATIAKAQITNG-GPIILYQPENEYSGACCGYNGFPDGSYMQYIEDHAR 185
Query: 301 SNGIRSPLFTADDPSMG----DSGSLIEDVLYAANILYAGEELRKLS------------- 343
GI P + D + G +G+ D+ Y + G + S
Sbjct: 186 DAGIVVPFISNDAWAAGHNAPGTGAGAVDI-YGHDSYPLGFDCANPSTWPSGNLPTYFHT 244
Query: 344 ---YMQPNKPLMVMEWWTGWFDTWAK---NRHNTFPTNEYEMTL-QSLLEYPVS-LNLFM 395
P+ P ++E+ G FD W + +E+E ++ + V+ LNL+M
Sbjct: 245 SHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNLYM 304
Query: 396 FHGGTSWGFYNGANIDKSLDKYTPDTTSYDYDAPLTE 432
GGT+WG N+ + TSYDY + ++E
Sbjct: 305 IFGGTNWG-----NLG-----HPGGYTSYDYGSAISE 331
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/339 (27%), Positives = 149/339 (43%), Gaps = 50/339 (14%)
Query: 125 NTFLLNGKEFRILSGSIHYFRV-RPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYE 183
++ ++G+ I SG +H FR+ P + D K++A+G NTV Y+ W L E +
Sbjct: 31 HSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGKPGRFR 90
Query: 184 FGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKY 243
+ F + A + ++++ RPGPYI AE GG P +L R G KLR+ P Y
Sbjct: 91 ---ADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKG-KLRTDAPDY 146
Query: 244 LNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELA-----VLGPNVADKNYMRELVAM 298
L+ Y ++ ++ Q +G GP+I+ ENE + VL PN K YM+ ++
Sbjct: 147 LHATDNYVAHIASIIAKAQITNG-GPVILYQPENEYSGAAEGVLFPN---KPYMQYVIDQ 202
Query: 299 LRSNGIRSPLFTAD----------------DPSMGDSGSLIEDVLYAA----NILYAGEE 338
R+ GI PL D D D L D + + N L
Sbjct: 203 ARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWR 262
Query: 339 LRKLSYMQPNKPLMVMEWWTGWFD---TWAKNRHNTFPTNEYEMTL--QSLLEYPVSLNL 393
L+ + P+ P ++E+ G FD W + + +E+E ++ N+
Sbjct: 263 QDHLN-ISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIFNI 321
Query: 394 FMFHGGTSWGFYNGANIDKSLDKYTPDTTSYDYDAPLTE 432
+M GGT+WG N+ + TSYDY A + E
Sbjct: 322 YMTFGGTNWG-----NLG-----HPGGYTSYDYGASIRE 350
>pdb|3U7V|A Chain A, The Structure Of A Putative Beta-Galactosidase From
Caulobacter Crescentus Cb15
Length = 552
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 18/173 (10%)
Query: 122 DNPNTFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDV 181
D + ++G F L+ ++ P + +GANTV+ IAW EP++
Sbjct: 46 DGRHALXVDGAPFLXLAAQVNNSSAWPSQXAKVWPAIEKVGANTVQVPIAWEQIEPVEGQ 105
Query: 182 YEFGDNNKDIDFVKFIKIAQEEDLFVII-------RPGPYICAEW---DFGGMPSYLLRE 231
++F +D + ++ A+E + +++ P EW D P L+++
Sbjct: 106 FDF----SYLDLL--LEQARERKVRLVLLWFGTWKNSSPSYAPEWVKLDDKRFPR-LIKD 158
Query: 232 PGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFID-GQGPIIMLGVENELAVLG 283
G + S P + + + L L+ D Q +I + VENE G
Sbjct: 159 DGERSYSXSPLAKSTLDADRKAFVALXTHLKAKDAAQKTVIXVQVENETGTYG 211
>pdb|2KBG|A Chain A, Solution Structure Of The Second Fibronectin Type-Iii
Module Of Ncam2
Length = 114
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 65 SESNVNNPADVDINGLPVTTDS-EILMTSSEDGGSPIITNYIYYEFEKNKENTGLQ 119
+E+++ P+ I+G P + S ++ +T +DGG+PI+ YI K+KE+ L+
Sbjct: 2 AEASMREPSPPSIHGQPSSGKSFKLSITKQDDGGAPIL-EYIVKYRSKDKEDQWLE 56
>pdb|2X82|A Chain A, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X82|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X82|C Chain C, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X82|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 145
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 407 GANIDKSLDKYTPDTTSYDYDAPLTEGGDYTAKYWITRKYFLQVAQNLNISHPTPPEVLP 466
GA + + T YD + L GD+ A I R+ + A ++ HP P LP
Sbjct: 32 GAEVVPGFQALSEGCTPYDINQMLNCVGDHQAAMQIIREIINEEAAEWDVQHPIPAGPLP 91
>pdb|3CUX|A Chain A, Atomic Resolution Structures Of Escherichia Coli And
Bacillis Anthracis Malate Synthase A: Comparison With
Isoform G And Implications For Structure Based Drug
Design
Length = 528
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 6/125 (4%)
Query: 51 SDTKICENKLDLKISESNVNNPADVDINGLPVTTDSEILMTSSEDGGSPIITNYIYYEFE 110
+D I + DL+ + P D + + + + + M ED SP N I +
Sbjct: 72 ADWTIAKLPKDLEDRRVEITGPVDRKMVINALNSGAHLFMADFEDSNSPTWENAIEGQIN 131
Query: 111 KNKENTGLQYDDNPNTFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYI 170
G N NGKE+R L+ VRP W + ++ G N + +
Sbjct: 132 LRDAVKGTISHKNE-----NGKEYR-LNSKTAVLIVRPRGWHLEEKHMQVDGKNMSGSLV 185
Query: 171 AWNLH 175
+ L+
Sbjct: 186 DFGLY 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,967,309
Number of Sequences: 62578
Number of extensions: 1081813
Number of successful extensions: 2517
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2476
Number of HSP's gapped (non-prelim): 28
length of query: 758
length of database: 14,973,337
effective HSP length: 106
effective length of query: 652
effective length of database: 8,340,069
effective search space: 5437724988
effective search space used: 5437724988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)