Query psy12280
Match_columns 758
No_of_seqs 255 out of 1525
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 23:17:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 5E-147 1E-151 1275.8 54.0 583 108-744 20-726 (840)
2 KOG0496|consensus 100.0 2E-127 5E-132 1075.9 46.9 578 115-747 17-640 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 9.8E-96 2E-100 785.8 22.7 311 126-450 1-319 (319)
4 COG1874 LacA Beta-galactosidas 100.0 6E-45 1.3E-49 419.0 11.3 543 119-733 2-591 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.9 4.1E-21 9E-26 211.0 17.9 269 140-451 1-372 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.7 1.3E-15 2.8E-20 162.5 19.9 199 119-362 2-212 (298)
7 PRK10150 beta-D-glucuronidase; 99.6 6.5E-14 1.4E-18 163.4 27.2 170 111-312 273-449 (604)
8 PRK10340 ebgA cryptic beta-D-g 99.6 1.5E-13 3.2E-18 168.6 26.3 268 110-451 314-603 (1021)
9 PRK09525 lacZ beta-D-galactosi 99.4 5.3E-12 1.2E-16 155.0 22.9 272 110-451 330-629 (1027)
10 PF13364 BetaGal_dom4_5: Beta- 99.2 2.5E-11 5.5E-16 112.8 8.5 65 662-730 34-104 (111)
11 COG3250 LacZ Beta-galactosidas 99.2 2E-10 4.3E-15 137.3 16.4 123 111-281 281-409 (808)
12 PF00150 Cellulase: Cellulase 99.0 5.5E-09 1.2E-13 108.5 13.6 160 129-312 3-172 (281)
13 PF03198 Glyco_hydro_72: Gluca 98.6 2.3E-06 4.9E-11 92.4 17.4 258 119-450 12-313 (314)
14 smart00633 Glyco_10 Glycosyl h 98.6 1.4E-06 2.9E-11 91.8 15.4 221 172-442 3-253 (254)
15 PF13204 DUF4038: Protein of u 98.4 5.8E-06 1.3E-10 89.1 14.2 242 123-392 1-279 (289)
16 PF13364 BetaGal_dom4_5: Beta- 98.3 4.1E-06 9E-11 78.0 9.2 78 500-597 25-110 (111)
17 COG3693 XynA Beta-1,4-xylanase 98.0 0.00013 2.7E-09 79.2 15.0 174 158-356 55-258 (345)
18 PF00331 Glyco_hydro_10: Glyco 97.7 0.00039 8.6E-09 76.0 13.1 265 136-446 11-319 (320)
19 TIGR03356 BGL beta-galactosida 97.6 5.9E-05 1.3E-09 85.5 5.9 97 149-260 54-151 (427)
20 PLN02801 beta-amylase 97.6 0.00041 8.8E-09 79.1 11.4 118 147-276 35-184 (517)
21 PLN02905 beta-amylase 97.5 0.00047 1E-08 80.0 11.2 80 147-235 284-375 (702)
22 PLN02161 beta-amylase 97.5 0.00022 4.8E-09 81.2 7.9 116 148-276 116-263 (531)
23 PLN02705 beta-amylase 97.4 0.00031 6.7E-09 81.2 8.2 118 147-276 266-415 (681)
24 PLN00197 beta-amylase; Provisi 97.4 0.00052 1.1E-08 78.8 8.5 80 147-235 125-216 (573)
25 PLN02803 beta-amylase 97.3 0.00063 1.4E-08 78.0 8.5 116 148-276 106-253 (548)
26 PF01373 Glyco_hydro_14: Glyco 97.0 0.00072 1.6E-08 75.7 4.5 115 150-276 17-153 (402)
27 PF07745 Glyco_hydro_53: Glyco 96.9 0.019 4.2E-07 63.4 15.1 131 152-308 27-172 (332)
28 PF14488 DUF4434: Domain of un 96.9 0.016 3.4E-07 58.1 12.9 137 144-311 15-160 (166)
29 PF02837 Glyco_hydro_2_N: Glyc 96.9 0.0026 5.7E-08 62.1 7.3 91 512-625 64-163 (167)
30 PF00232 Glyco_hydro_1: Glycos 96.6 0.0022 4.8E-08 73.4 4.7 97 149-260 58-156 (455)
31 KOG2230|consensus 96.5 0.019 4.2E-07 66.2 11.7 148 125-314 328-495 (867)
32 PF02837 Glyco_hydro_2_N: Glyc 96.3 0.01 2.2E-07 58.0 7.0 70 662-732 67-138 (167)
33 PRK09852 cryptic 6-phospho-bet 96.2 0.0043 9.3E-08 71.6 4.4 106 149-270 71-183 (474)
34 PLN02814 beta-glucosidase 96.1 0.0063 1.4E-07 70.7 5.0 111 149-271 77-189 (504)
35 PRK15014 6-phospho-beta-glucos 96.0 0.0078 1.7E-07 69.5 5.4 102 139-260 64-168 (477)
36 PLN02998 beta-glucosidase 96.0 0.0071 1.5E-07 70.1 5.1 111 149-271 82-194 (497)
37 COG2730 BglC Endoglucanase [Ca 95.7 0.026 5.7E-07 63.8 8.0 116 148-281 67-193 (407)
38 PLN02849 beta-glucosidase 95.7 0.012 2.5E-07 68.6 4.9 112 149-272 79-192 (503)
39 PRK09593 arb 6-phospho-beta-gl 95.7 0.014 3E-07 67.5 5.5 110 149-270 73-185 (478)
40 PRK13511 6-phospho-beta-galact 95.6 0.013 2.7E-07 67.6 5.0 95 149-258 54-149 (469)
41 PRK09589 celA 6-phospho-beta-g 95.5 0.015 3.3E-07 67.2 5.1 110 149-270 67-179 (476)
42 TIGR01233 lacG 6-phospho-beta- 95.5 0.017 3.6E-07 66.7 5.4 100 139-258 48-148 (467)
43 PF14871 GHL6: Hypothetical gl 95.3 0.073 1.6E-06 51.5 8.1 97 153-258 4-123 (132)
44 COG3867 Arabinogalactan endo-1 95.1 0.1 2.2E-06 56.7 9.1 115 152-281 66-183 (403)
45 COG2723 BglB Beta-glucosidase/ 93.9 0.096 2.1E-06 60.1 6.2 107 149-266 59-168 (460)
46 COG5309 Exo-beta-1,3-glucanase 93.7 2.7 5.9E-05 45.4 15.9 197 145-396 58-279 (305)
47 PRK10150 beta-D-glucuronidase; 91.7 0.59 1.3E-05 55.5 8.8 67 514-595 63-137 (604)
48 smart00642 Aamy Alpha-amylase 91.7 0.41 9E-06 47.8 6.4 62 149-213 19-92 (166)
49 PRK09936 hypothetical protein; 90.1 4.1 8.9E-05 44.5 12.5 59 144-210 33-91 (296)
50 PF02055 Glyco_hydro_30: O-Gly 90.0 2.6 5.7E-05 49.3 11.8 258 81-359 29-340 (496)
51 TIGR01515 branching_enzym alph 89.8 3.3 7.3E-05 49.6 12.8 156 152-312 159-349 (613)
52 KOG0496|consensus 88.5 0.2 4.4E-06 59.2 1.4 57 391-451 270-330 (649)
53 smart00812 Alpha_L_fucos Alpha 87.7 4 8.6E-05 46.3 10.9 142 140-305 75-225 (384)
54 PF02638 DUF187: Glycosyl hydr 87.4 2.2 4.9E-05 46.8 8.5 123 147-276 17-161 (311)
55 PRK10340 ebgA cryptic beta-D-g 87.1 2 4.3E-05 54.5 9.0 90 516-627 109-205 (1021)
56 PRK09525 lacZ beta-D-galactosi 86.8 2.2 4.7E-05 54.1 9.1 91 515-627 119-217 (1027)
57 PRK05402 glycogen branching en 86.0 7.4 0.00016 47.6 12.8 54 155-211 272-335 (726)
58 TIGR00542 hxl6Piso_put hexulos 85.6 11 0.00024 40.0 12.5 130 148-306 15-149 (279)
59 PRK14706 glycogen branching en 85.5 10 0.00022 45.9 13.4 54 155-211 174-237 (639)
60 PF05913 DUF871: Bacterial pro 85.4 1.1 2.4E-05 50.2 5.0 70 137-215 2-71 (357)
61 PF14307 Glyco_tran_WbsX: Glyc 84.7 13 0.00027 41.5 12.8 136 148-313 57-198 (345)
62 PF00128 Alpha-amylase: Alpha 84.7 1.4 3E-05 46.1 5.0 60 152-211 7-72 (316)
63 PRK09441 cytoplasmic alpha-amy 84.5 1.3 2.7E-05 51.4 5.1 71 141-211 7-101 (479)
64 COG0296 GlgB 1,4-alpha-glucan 82.2 2.2 4.7E-05 51.2 5.8 59 148-210 164-233 (628)
65 PRK12568 glycogen branching en 81.5 18 0.00039 44.4 13.3 55 152-211 273-339 (730)
66 PF04909 Amidohydro_2: Amidohy 81.5 6.2 0.00013 40.6 8.3 152 135-315 72-235 (273)
67 PF01261 AP_endonuc_2: Xylose 80.5 3.6 7.7E-05 40.6 5.9 124 155-307 1-129 (213)
68 PRK13210 putative L-xylulose 5 79.9 24 0.00052 37.2 12.3 133 145-305 11-148 (284)
69 PLN02447 1,4-alpha-glucan-bran 79.5 3.5 7.5E-05 50.6 6.4 61 148-211 250-320 (758)
70 TIGR02402 trehalose_TreZ malto 78.5 3.4 7.4E-05 48.8 5.9 54 152-211 114-180 (542)
71 COG3934 Endo-beta-mannanase [C 78.2 1.6 3.4E-05 50.5 2.8 173 125-313 2-184 (587)
72 PRK12677 xylose isomerase; Pro 78.1 39 0.00084 38.4 13.9 96 148-261 30-126 (384)
73 cd00019 AP2Ec AP endonuclease 77.7 17 0.00038 38.5 10.4 132 142-305 4-138 (279)
74 PRK09856 fructoselysine 3-epim 77.5 45 0.00098 35.1 13.4 129 148-305 12-144 (275)
75 PRK10785 maltodextrin glucosid 77.2 46 0.001 39.9 14.8 147 151-309 181-370 (598)
76 TIGR02403 trehalose_treC alpha 76.9 3 6.5E-05 49.2 4.8 58 149-211 27-95 (543)
77 TIGR02631 xylA_Arthro xylose i 76.3 35 0.00075 38.8 12.8 93 147-261 30-127 (382)
78 PRK09997 hydroxypyruvate isome 75.7 47 0.001 34.9 13.0 50 140-209 9-58 (258)
79 PF02679 ComA: (2R)-phospho-3- 74.9 3.6 7.8E-05 44.0 4.3 57 142-212 78-134 (244)
80 PF01229 Glyco_hydro_39: Glyco 74.3 17 0.00038 42.3 10.1 124 138-281 28-167 (486)
81 PRK12313 glycogen branching en 73.9 5 0.00011 48.2 5.7 55 154-211 176-240 (633)
82 cd06565 GH20_GcnA-like Glycosy 73.9 52 0.0011 36.0 13.1 152 148-313 16-187 (301)
83 PRK13209 L-xylulose 5-phosphat 72.7 31 0.00068 36.5 10.8 130 148-306 20-154 (283)
84 TIGR03234 OH-pyruv-isom hydrox 71.5 92 0.002 32.4 13.8 43 150-209 15-57 (254)
85 PRK10933 trehalose-6-phosphate 71.1 6.9 0.00015 46.4 5.9 60 149-211 33-101 (551)
86 COG1649 Uncharacterized protei 71.0 15 0.00032 42.3 8.2 124 146-280 61-210 (418)
87 PF01120 Alpha_L_fucos: Alpha- 70.1 1.5E+02 0.0032 33.1 15.8 211 144-390 89-309 (346)
88 PRK01060 endonuclease IV; Prov 68.8 77 0.0017 33.5 12.7 94 151-275 14-110 (281)
89 PLN02960 alpha-amylase 68.4 8.7 0.00019 47.8 6.0 59 150-211 418-486 (897)
90 TIGR02456 treS_nterm trehalose 68.3 5.9 0.00013 46.6 4.6 61 148-210 27-95 (539)
91 PLN02361 alpha-amylase 68.1 18 0.00038 41.4 8.1 80 130-211 9-96 (401)
92 TIGR03849 arch_ComA phosphosul 65.4 11 0.00024 40.3 5.4 62 138-213 60-122 (237)
93 TIGR02104 pulA_typeI pullulana 65.3 9.5 0.0002 45.7 5.5 59 150-211 165-249 (605)
94 PF13199 Glyco_hydro_66: Glyco 64.9 8.8 0.00019 45.7 5.1 84 147-230 116-211 (559)
95 PRK09505 malS alpha-amylase; R 64.7 10 0.00023 46.2 5.7 58 151-211 232-312 (683)
96 cd04908 ACT_Bt0572_1 N-termina 62.6 31 0.00067 28.6 6.6 55 148-209 12-66 (66)
97 PF13200 DUF4015: Putative gly 60.9 23 0.00049 39.4 7.0 63 148-211 12-81 (316)
98 COG2159 Predicted metal-depend 60.9 99 0.0021 33.8 11.9 72 133-215 97-168 (293)
99 cd06589 GH31 The enzymes of gl 58.7 43 0.00092 35.7 8.5 74 141-215 13-90 (265)
100 PRK14510 putative bifunctional 57.8 13 0.00029 48.2 5.2 56 153-211 191-267 (1221)
101 PRK14705 glycogen branching en 57.7 16 0.00034 47.4 5.8 56 153-211 770-835 (1224)
102 TIGR01531 glyc_debranch glycog 57.5 35 0.00076 44.7 8.7 122 113-245 94-234 (1464)
103 COG3589 Uncharacterized conser 56.9 28 0.0006 39.0 6.7 72 137-218 4-76 (360)
104 PRK09267 flavodoxin FldA; Vali 56.2 40 0.00087 33.1 7.3 114 133-258 48-167 (169)
105 PF03659 Glyco_hydro_71: Glyco 56.1 56 0.0012 37.3 9.3 53 147-211 15-67 (386)
106 COG1735 Php Predicted metal-de 55.7 1E+02 0.0022 34.4 10.6 122 152-314 51-174 (316)
107 PF01791 DeoC: DeoC/LacD famil 55.1 3.9 8.4E-05 42.8 -0.1 53 152-210 79-131 (236)
108 smart00518 AP2Ec AP endonuclea 55.1 2.5E+02 0.0054 29.5 13.5 93 139-261 3-96 (273)
109 cd06593 GH31_xylosidase_YicI Y 54.7 29 0.00062 37.7 6.5 69 147-216 22-91 (308)
110 PRK09989 hypothetical protein; 53.8 1.8E+02 0.0038 30.6 12.1 43 150-209 16-58 (258)
111 PRK14582 pgaB outer membrane N 53.5 52 0.0011 40.2 8.9 116 133-262 313-457 (671)
112 TIGR02401 trehalose_TreY malto 53.4 27 0.0006 43.4 6.7 63 148-213 15-87 (825)
113 COG1306 Uncharacterized conser 53.0 32 0.00069 38.1 6.3 66 140-211 69-144 (400)
114 smart00481 POLIIIAc DNA polyme 52.6 42 0.00091 27.9 5.8 44 150-209 16-59 (67)
115 cd06547 GH85_ENGase Endo-beta- 52.4 25 0.00055 39.3 5.7 115 165-312 32-150 (339)
116 smart00518 AP2Ec AP endonuclea 52.3 1.2E+02 0.0026 31.9 10.6 75 133-212 26-106 (273)
117 PF06832 BiPBP_C: Penicillin-B 51.9 36 0.00079 30.1 5.6 66 515-598 18-84 (89)
118 PF12876 Cellulase-like: Sugar 51.3 24 0.00052 31.3 4.4 44 268-311 9-63 (88)
119 PRK14507 putative bifunctional 51.3 25 0.00055 46.9 6.2 61 147-213 756-829 (1693)
120 PF14683 CBM-like: Polysacchar 50.6 13 0.00029 37.3 2.9 41 688-729 91-148 (167)
121 PRK13398 3-deoxy-7-phosphohept 50.5 69 0.0015 34.7 8.5 79 126-211 20-98 (266)
122 PRK03705 glycogen debranching 49.9 26 0.00057 42.6 5.7 57 154-210 184-261 (658)
123 PF07755 DUF1611: Protein of u 49.1 11 0.00025 41.4 2.3 59 135-211 36-95 (301)
124 cd06599 GH31_glycosidase_Aec37 48.6 61 0.0013 35.6 7.9 69 148-216 28-98 (317)
125 PRK09856 fructoselysine 3-epim 47.5 20 0.00044 37.7 3.9 59 149-214 90-153 (275)
126 PRK10658 putative alpha-glucos 47.4 6.3E+02 0.014 31.1 19.6 67 147-216 281-350 (665)
127 PLN03059 beta-galactosidase; P 47.2 59 0.0013 40.7 8.1 70 662-732 469-545 (840)
128 PRK14511 maltooligosyl trehalo 47.2 40 0.00086 42.4 6.7 62 146-213 17-91 (879)
129 PLN00196 alpha-amylase; Provis 47.0 69 0.0015 37.1 8.3 60 152-211 47-112 (428)
130 TIGR00677 fadh2_euk methylenet 46.6 83 0.0018 34.2 8.4 107 135-261 130-252 (281)
131 TIGR02100 glgX_debranch glycog 46.6 30 0.00066 42.3 5.6 58 154-211 189-265 (688)
132 PRK08673 3-deoxy-7-phosphohept 45.1 81 0.0017 35.4 8.2 78 126-211 86-164 (335)
133 PF01261 AP_endonuc_2: Xylose 44.8 31 0.00067 33.9 4.5 64 148-215 70-136 (213)
134 PTZ00372 endonuclease 4-like p 44.7 94 0.002 35.9 8.8 82 151-261 143-230 (413)
135 PRK12858 tagatose 1,6-diphosph 42.7 38 0.00083 38.0 5.2 66 140-211 98-163 (340)
136 TIGR00587 nfo apurinic endonuc 42.4 1.2E+02 0.0026 32.4 8.8 85 152-261 14-100 (274)
137 TIGR01698 PUNP purine nucleoti 42.2 72 0.0016 34.1 6.9 40 128-167 47-87 (237)
138 cd06568 GH20_SpHex_like A subg 41.8 2.9E+02 0.0063 30.8 11.9 77 125-211 4-95 (329)
139 PF14587 Glyco_hydr_30_2: O-Gl 41.7 1.3E+02 0.0029 34.4 9.3 139 159-314 57-228 (384)
140 PF08531 Bac_rhamnosid_N: Alph 41.4 33 0.00072 34.4 4.1 50 681-731 5-63 (172)
141 smart00854 PGA_cap Bacterial c 40.8 3.5E+02 0.0077 28.2 11.9 49 144-208 59-107 (239)
142 PRK09875 putative hydrolase; P 40.4 3E+02 0.0065 30.3 11.5 63 148-230 33-95 (292)
143 PLN02784 alpha-amylase 40.1 59 0.0013 40.8 6.6 59 152-211 524-588 (894)
144 PF02065 Melibiase: Melibiase; 39.9 3.9E+02 0.0085 30.7 12.8 117 141-257 50-181 (394)
145 COG0366 AmyA Glycosidases [Car 39.5 34 0.00073 38.9 4.3 55 153-210 33-96 (505)
146 cd06562 GH20_HexA_HexB-like Be 38.8 3.8E+02 0.0083 30.0 12.3 68 142-211 13-90 (348)
147 cd00311 TIM Triosephosphate is 37.4 55 0.0012 35.0 5.2 49 155-212 77-125 (242)
148 PRK00042 tpiA triosephosphate 37.3 1.4E+02 0.003 32.2 8.2 127 154-309 78-231 (250)
149 TIGR03581 EF_0839 conserved hy 36.2 72 0.0016 33.9 5.6 46 151-211 137-182 (236)
150 cd06591 GH31_xylosidase_XylS X 35.4 86 0.0019 34.5 6.5 68 147-216 22-91 (319)
151 KOG0626|consensus 35.2 67 0.0014 38.1 5.8 113 150-274 92-208 (524)
152 cd02742 GH20_hexosaminidase Be 35.0 2.7E+02 0.0058 30.5 10.2 66 146-211 13-92 (303)
153 COG3623 SgaU Putative L-xylulo 34.0 43 0.00094 36.0 3.6 51 148-206 17-69 (287)
154 TIGR02102 pullulan_Gpos pullul 33.8 72 0.0016 41.3 6.2 21 191-211 555-575 (1111)
155 PRK14565 triosephosphate isome 33.6 1.3E+02 0.0028 32.3 7.1 86 155-254 78-186 (237)
156 KOG2566|consensus 32.9 8.4E+02 0.018 28.4 13.4 240 126-381 88-388 (518)
157 PRK13210 putative L-xylulose 5 32.5 50 0.0011 34.8 4.0 59 149-211 94-153 (284)
158 COG1501 Alpha-glucosidases, fa 32.0 7.4E+02 0.016 31.1 14.3 172 184-390 313-500 (772)
159 PF00120 Gln-synt_C: Glutamine 31.7 85 0.0019 33.4 5.6 64 148-216 68-140 (259)
160 PF13380 CoA_binding_2: CoA bi 31.3 1.2E+02 0.0025 28.5 5.8 45 145-208 62-106 (116)
161 PLN03036 glutamine synthetase; 31.1 1.7E+02 0.0036 34.1 8.1 67 151-223 232-307 (432)
162 PF07071 DUF1341: Protein of u 30.9 81 0.0018 33.2 4.9 46 151-211 137-182 (218)
163 cd06563 GH20_chitobiase-like T 30.2 5.1E+02 0.011 29.0 11.6 68 142-211 13-106 (357)
164 cd06416 GH25_Lys1-like Lys-1 i 30.2 81 0.0018 32.0 4.9 90 139-231 56-157 (196)
165 KOG1412|consensus 30.2 1.1E+02 0.0024 34.4 6.0 128 59-221 55-191 (410)
166 cd04882 ACT_Bt0572_2 C-termina 30.1 1.2E+02 0.0027 24.1 5.1 55 148-207 10-64 (65)
167 TIGR02103 pullul_strch alpha-1 30.1 83 0.0018 39.8 5.8 21 191-211 404-424 (898)
168 cd04726 KGPDC_HPS 3-Keto-L-gul 29.6 1E+02 0.0022 30.9 5.5 44 154-213 69-113 (202)
169 COG1891 Uncharacterized protei 29.5 33 0.00071 35.3 1.8 65 135-210 117-186 (235)
170 PLN02877 alpha-amylase/limit d 29.3 98 0.0021 39.5 6.2 21 191-211 466-486 (970)
171 cd06598 GH31_transferase_CtsZ 29.3 1.4E+02 0.0031 32.7 7.0 70 147-216 22-95 (317)
172 cd07381 MPP_CapA CapA and rela 27.8 7E+02 0.015 25.8 12.3 130 152-308 67-212 (239)
173 cd06600 GH31_MGAM-like This fa 27.7 1.2E+02 0.0026 33.4 6.0 74 141-216 13-89 (317)
174 cd06592 GH31_glucosidase_KIAA1 27.6 1.7E+02 0.0036 32.0 7.1 69 144-216 25-95 (303)
175 PRK09432 metF 5,10-methylenete 27.3 1.8E+02 0.0039 31.9 7.2 101 140-261 154-267 (296)
176 COG2876 AroA 3-deoxy-D-arabino 27.3 1.9E+02 0.0041 31.8 7.1 73 148-252 58-130 (286)
177 PRK09997 hydroxypyruvate isome 27.1 64 0.0014 33.9 3.6 59 149-211 85-144 (258)
178 cd06564 GH20_DspB_LnbB-like Gl 27.0 8.1E+02 0.018 27.0 12.3 67 142-210 12-101 (326)
179 TIGR03234 OH-pyruv-isom hydrox 26.9 60 0.0013 33.8 3.4 60 148-211 83-143 (254)
180 COG1453 Predicted oxidoreducta 26.8 3.2E+02 0.007 31.4 9.0 93 129-260 8-108 (391)
181 PRK05660 HemN family oxidoredu 26.7 67 0.0015 36.2 3.9 63 137-207 96-159 (378)
182 KOG2024|consensus 26.7 74 0.0016 34.7 4.0 47 498-552 70-128 (297)
183 TIGR00542 hxl6Piso_put hexulos 26.7 76 0.0016 33.7 4.2 58 150-211 95-153 (279)
184 cd06603 GH31_GANC_GANAB_alpha 26.3 1.3E+02 0.0028 33.3 6.1 69 148-218 23-91 (339)
185 PRK13791 lysozyme inhibitor; P 25.9 1.3E+02 0.0027 28.8 5.0 81 30-119 7-99 (113)
186 cd06604 GH31_glucosidase_II_Ma 25.8 1.4E+02 0.0031 33.0 6.2 74 141-216 13-89 (339)
187 cd00019 AP2Ec AP endonuclease 25.3 55 0.0012 34.7 2.8 58 149-213 85-145 (279)
188 PRK15492 triosephosphate isome 25.3 1.2E+02 0.0025 32.9 5.2 49 155-212 87-135 (260)
189 TIGR00539 hemN_rel putative ox 25.1 79 0.0017 35.2 4.1 62 137-206 89-151 (360)
190 cd06602 GH31_MGAM_SI_GAA This 25.0 1.6E+02 0.0034 32.9 6.4 75 141-217 13-92 (339)
191 cd01299 Met_dep_hydrolase_A Me 24.7 1.7E+02 0.0037 31.7 6.5 61 147-211 118-180 (342)
192 TIGR03128 RuMP_HxlA 3-hexulose 24.6 1.5E+02 0.0032 30.1 5.6 41 154-210 68-108 (206)
193 TIGR00419 tim triosephosphate 24.5 1.4E+02 0.003 31.2 5.5 44 155-211 74-117 (205)
194 PRK10966 exonuclease subunit S 24.5 5.3E+02 0.012 29.6 10.6 86 133-234 41-136 (407)
195 KOG3833|consensus 24.3 79 0.0017 35.4 3.7 53 150-211 444-499 (505)
196 PF04914 DltD_C: DltD C-termin 24.1 51 0.0011 32.1 2.1 29 190-219 35-63 (130)
197 PF07905 PucR: Purine cataboli 24.1 3.5E+02 0.0075 25.5 7.7 68 128-211 39-106 (123)
198 PTZ00333 triosephosphate isome 24.0 1.3E+02 0.0028 32.5 5.3 48 156-212 83-130 (255)
199 cd00003 PNPsynthase Pyridoxine 24.0 1.4E+02 0.0031 32.0 5.4 49 148-217 109-158 (234)
200 PRK01060 endonuclease IV; Prov 24.0 5.9E+02 0.013 26.8 10.3 61 148-212 46-111 (281)
201 PRK08645 bifunctional homocyst 24.0 2.9E+02 0.0062 33.5 8.7 111 130-260 459-579 (612)
202 cd07944 DRE_TIM_HOA_like 4-hyd 23.6 4.1E+02 0.0088 28.6 9.0 142 144-313 15-160 (266)
203 PRK08446 coproporphyrinogen II 23.6 1.5E+02 0.0033 33.0 5.9 62 137-206 87-149 (350)
204 cd00537 MTHFR Methylenetetrahy 23.3 2.7E+02 0.0059 29.7 7.6 101 140-260 138-250 (274)
205 cd06570 GH20_chitobiase-like_1 23.3 9.6E+02 0.021 26.6 12.0 64 146-211 15-88 (311)
206 PF09587 PGA_cap: Bacterial ca 23.2 4.1E+02 0.0089 27.9 8.8 126 152-308 65-221 (250)
207 PRK10426 alpha-glucosidase; Pr 23.2 7.8E+02 0.017 30.1 12.1 68 149-216 221-294 (635)
208 PF03644 Glyco_hydro_85: Glyco 23.2 47 0.001 36.7 1.8 114 164-311 27-144 (311)
209 PRK12595 bifunctional 3-deoxy- 22.9 3.7E+02 0.008 30.5 8.8 78 127-211 112-189 (360)
210 PRK14456 ribosomal RNA large s 22.9 3.6E+02 0.0079 30.6 8.8 128 153-321 222-361 (368)
211 cd06595 GH31_xylosidase_XylS-l 22.5 2.3E+02 0.0049 30.8 6.9 67 147-214 23-97 (292)
212 PRK12331 oxaloacetate decarbox 22.5 1.8E+02 0.0039 34.0 6.4 56 141-211 88-143 (448)
213 PRK05265 pyridoxine 5'-phospha 22.5 1.6E+02 0.0034 31.7 5.4 49 148-217 112-161 (239)
214 PRK13209 L-xylulose 5-phosphat 22.4 87 0.0019 33.1 3.6 59 150-212 100-159 (283)
215 PRK08227 autoinducer 2 aldolas 22.3 64 0.0014 35.0 2.6 47 154-209 99-145 (264)
216 COG0149 TpiA Triosephosphate i 22.2 1.5E+02 0.0032 32.2 5.2 49 155-212 81-129 (251)
217 PRK02308 uvsE putative UV dama 22.1 1.1E+03 0.023 26.1 12.7 100 159-281 58-160 (303)
218 PRK14566 triosephosphate isome 22.1 1.4E+02 0.003 32.4 5.1 49 155-212 88-136 (260)
219 PLN02284 glutamine synthetase 21.6 3.1E+02 0.0066 31.0 7.8 63 155-223 176-247 (354)
220 PRK13396 3-deoxy-7-phosphohept 21.3 4E+02 0.0087 30.3 8.6 77 127-211 94-172 (352)
221 PF02606 LpxK: Tetraacyldisacc 21.1 1.9E+02 0.0042 32.2 6.1 59 127-204 223-281 (326)
222 PLN02692 alpha-galactosidase 21.0 4.4E+02 0.0094 30.7 8.9 69 144-217 68-149 (412)
223 PF14701 hDGE_amylase: glucano 20.9 1.3E+02 0.0029 34.8 4.8 89 148-245 21-126 (423)
224 PF01055 Glyco_hydro_31: Glyco 20.8 1.7E+02 0.0038 33.3 5.8 71 147-219 41-111 (441)
225 PF11324 DUF3126: Protein of u 20.8 1.4E+02 0.0031 25.8 3.8 23 538-573 23-45 (63)
226 PRK09057 coproporphyrinogen II 20.6 1.7E+02 0.0036 33.1 5.5 65 137-209 93-158 (380)
227 PLN02561 triosephosphate isome 20.5 1.6E+02 0.0035 31.8 5.2 50 154-212 80-129 (253)
228 KOG0470|consensus 20.4 1E+02 0.0022 37.9 4.0 55 152-211 258-331 (757)
229 PF03851 UvdE: UV-endonuclease 20.4 6.7E+02 0.015 27.5 9.8 134 154-315 50-189 (275)
230 PF08308 PEGA: PEGA domain; I 20.4 1.2E+02 0.0027 25.4 3.5 17 535-552 4-20 (71)
231 PF08306 Glyco_hydro_98M: Glyc 20.1 82 0.0018 35.2 2.8 89 136-252 105-201 (324)
232 PF02811 PHP: PHP domain; Int 20.1 2E+02 0.0043 27.5 5.3 45 150-210 17-61 (175)
233 KOG4039|consensus 20.1 2.3E+02 0.0049 29.7 5.7 87 138-231 98-185 (238)
234 cd07937 DRE_TIM_PC_TC_5S Pyruv 20.0 2.3E+02 0.0049 30.6 6.2 51 144-209 86-136 (275)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=4.7e-147 Score=1275.82 Aligned_cols=583 Identities=27% Similarity=0.457 Sum_probs=490.1
Q ss_pred eeeccceeeeEeecCCCceEEECCEEeEEEEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCC
Q psy12280 108 EFEKNKENTGLQYDDNPNTFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDN 187 (758)
Q Consensus 108 ~~~~~~r~~~v~~d~~~~~f~lnGkp~~i~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~ 187 (758)
.||+.....+|+||+ ++|+|||||++|+||+|||||+||++|+|||+||||||||||+||||||+|||+||+|||+|+
T Consensus 20 ~~~~~~~~~~v~~d~--~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~ 97 (840)
T PLN03059 20 SSWVSHGSASVSYDH--RAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDR 97 (840)
T ss_pred hhhhccceeEEEEeC--CEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccch
Confidence 456777788999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhh--cccccc
Q psy12280 188 NKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLE--PLQFID 265 (758)
Q Consensus 188 ~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~--~~~~~n 265 (758)
+||.+||++|+|+||+|||||||||||||++||+|.||++.|+|++||+||+|+++|++|+++|+++|+ ++++++
T Consensus 98 ---~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~ 174 (840)
T PLN03059 98 ---YDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQ 174 (840)
T ss_pred ---HHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999996 789999
Q ss_pred CCCCEEEeccccccccCC-CC-cchHHHHHHHHHHHHhcCCCcceEEcCCCCCCCCCCCcccceeecccCChHHHHHHhh
Q psy12280 266 GQGPIIMLGVENELAVLG-PN-VADKNYMRELVAMLRSNGIRSPLFTADDPSMGDSGSLIEDVLYAANILYAGEELRKLS 343 (758)
Q Consensus 266 G~GpIImvQIENEyg~~~-~y-~~d~~Y~~~L~~~~~~~G~~vpl~T~dg~~~~~~G~~~~~vl~t~nf~~~~~~f~~~~ 343 (758)
| |||||+|||||||+.. .| ++|++||+||+++++++|++||+||||++. . +++++.|+|..++ +.|..
T Consensus 175 G-GPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~-----~-~~~v~~t~Ng~~~-~~f~~-- 244 (840)
T PLN03059 175 G-GPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQED-----A-PDPVIDTCNGFYC-ENFKP-- 244 (840)
T ss_pred C-CcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCC-----C-CccceecCCCchh-hhccc--
Confidence 9 9999999999999921 11 689999999999999999999999999863 3 6789999995433 44543
Q ss_pred hcCCCCCceeeecccccccccCCCCCCCCChHHHHHHHHHHHhCCce-eeeeecccccCCCcCCCCCCCCCCCCCCCccc
Q psy12280 344 YMQPNKPLMVMEWWTGWFDTWAKNRHNTFPTNEYEMTLQSLLEYPVS-LNLFMFHGGTSWGFYNGANIDKSLDKYTPDTT 422 (758)
Q Consensus 344 ~~~P~~P~~~sEf~~GWf~~WG~~~~~~~~~~~~~~~l~~~l~~G~s-~N~YMfhGGTNfG~~~Ga~~~~~~~~y~p~~T 422 (758)
..+.+|+|++|||+|||+|||+ +++.+++++++..++++|+.|+| +||||||||||||||+||+. ++|
T Consensus 245 -~~~~~P~m~tE~w~GWf~~wG~-~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~---------~~T 313 (840)
T PLN03059 245 -NKDYKPKMWTEAWTGWYTEFGG-AVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPF---------IAT 313 (840)
T ss_pred -CCCCCCcEEeccCchhHhhcCC-CCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCc---------ccc
Confidence 4456899999999999999999 89999999999999999999999 79999999999999999972 689
Q ss_pred cCCCCCCCCCCCCCc-hhHHHHHHHHHHHhhccCCCCCCCCC-Cc-----------c--------ccccc---ceecc--
Q psy12280 423 SYDYDAPLTEGGDYT-AKYWITRKYFLQVAQNLNISHPTPPE-VL-----------P--------KMAYD---NVELG-- 476 (758)
Q Consensus 423 SYDYdAPi~E~G~~t-~Ky~~lR~li~~~~~~~~~~~~~~P~-~~-----------~--------~~~y~---~v~l~-- 476 (758)
||||||||+|+|++| |||.+||++|+++.. ++.+++..|+ .. + .++|+ .++++
T Consensus 314 SYDYdAPL~E~G~~t~pKy~~lr~l~~~~~~-~~~~l~~~~p~~~~lg~~~ea~~y~~~~~caaFl~n~~~~~~~~v~f~ 392 (840)
T PLN03059 314 SYDYDAPLDEYGLPREPKWGHLRDLHKAIKL-CEPALVSVDPTVTSLGSNQEAHVFKSKSACAAFLANYDTKYSVKVTFG 392 (840)
T ss_pred ccccCCccccccCcchhHHHHHHHHHHHHHh-cCccccCCCCceeccCCceeEEEccCccchhhheeccCCCCceeEEEC
Confidence 999999999999999 599999999999853 3433443332 11 2 44555 45544
Q ss_pred ---cccCcccc--ccCCCCc----------------cee-------------cc---CCCccccccccc-CCCCCccceE
Q psy12280 477 ---QQLTWHNL--VSQIPLE----------------KIV-------------VS---PSLIPMEDLAVN-NGTGQSFGYT 518 (758)
Q Consensus 477 ---~~~~L~~~--L~~~~~~----------------~~~-------------~s---~~P~~mE~l~~n-~~~gQ~~Gyv 518 (758)
+.++.|++ |++|+.. .++ .+ ..|++||+|..+ |.++|.+||+
T Consensus 393 g~~y~lp~~Svsilpd~~~~lfnta~v~~q~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYl 472 (840)
T PLN03059 393 NGQYDLPPWSVSILPDCKTAVFNTARLGAQSSQMKMNPVGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYL 472 (840)
T ss_pred CcccccCccceeecccccceeeeccccccccceeecccccccccceeecccccccccCCCcchhhHHHhhcccCCCCceE
Confidence 56677764 7777411 122 22 238888888444 5557779999
Q ss_pred EEeecccccCCCC-------CceeEeccccceEEEEEECCccccCCcCCcCCcceeEEEEccc--eeEEEe----cCCCC
Q psy12280 519 LYRQPDWHIPTDQ-------DAIMRIEGRVADIAIVMVNQERQTVPLSDVQDLNEFGFWKTEN--AELLLN----ITRPA 585 (758)
Q Consensus 519 lYrt~~~~i~~~~-------~~~L~i~~~~~D~a~Vfvng~~~~~~~~~~~~~~~vG~l~~~~--~~~~l~----~~~~~ 585 (758)
||||+ +.+.... ..+|++ .+++|+|+|||||+ ++|++.+.. ..+.++ ...+.
T Consensus 473 wY~t~-i~~~~~~~~~~~~~~~~L~v-~~~~d~~~vFVNg~-------------~~Gt~~~~~~~~~~~~~~~v~l~~g~ 537 (840)
T PLN03059 473 WYMTE-VHIDPDEGFLKTGQYPVLTI-FSAGHALHVFINGQ-------------LAGTVYGELSNPKLTFSQNVKLTVGI 537 (840)
T ss_pred EEEEE-EeecCCccccccCCCceEEE-cccCcEEEEEECCE-------------EEEEEEeecCCcceEEecccccCCCc
Confidence 99998 6543322 256888 89999999999999 999998753 346665 33578
Q ss_pred cEEEEEEeccCCCccccCcccccccccccccccCCceEEeCC-----ccCCCCee-EEEccCCchhc----c-c--cCCc
Q psy12280 586 NNIDILVENTGRVNYWLNDDFKYSNIKKGLGTSFDNVVTVNN-----ARPQKIWL-IYALEFEQDWV----N-G--LSKF 652 (758)
Q Consensus 586 ~~L~ILVEN~GRvNy~~~~~~~~~~~~KGI~~g~~~~V~L~g-----~~~L~~W~-~~~lpl~~~~~----~-~--~~~w 652 (758)
|+|+||||||||+||. +++++.+||| +| + |+|++ . +|++|+ +|+|+|+++.. . . ...|
T Consensus 538 n~L~iLse~vG~~NyG----~~le~~~kGI-~g--~-V~i~g~~~g~~-dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W 608 (840)
T PLN03059 538 NKISLLSVAVGLPNVG----LHFETWNAGV-LG--P-VTLKGLNEGTR-DLSGWKWSYKIGLKGEALSLHTITGSSSVEW 608 (840)
T ss_pred eEEEEEEEeCCCCccC----cccccccccc-cc--c-EEEecccCCce-ecccCccccccCccceeccccccCCCCCccc
Confidence 8999999999999991 2333449999 88 8 99988 5 889999 89999985322 1 1 1467
Q ss_pred cccccCCCCCCceEEEEEEeccCCCCCcc-eeeecCCceEEEEEECCeeceeeecc------------------------
Q psy12280 653 ESVTSERNLPSPTLFQAILTITTLDDLRD-TYLDMQDWTRGVVFVNGFNLGRYSRL------------------------ 707 (758)
Q Consensus 653 ~~~~~~~~~~~p~fyr~tF~l~~~~~~~D-TfLdm~gwgKG~v~VNG~nLGRYW~i------------------------ 707 (758)
...+......+|+|||++|+++. +.| |||||++||||+|||||+||||||++
T Consensus 609 ~~~~~~~~~~p~twYK~~Fd~p~---g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~ 685 (840)
T PLN03059 609 VEGSLLAQKQPLTWYKTTFDAPG---GNDPLALDMSSMGKGQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTN 685 (840)
T ss_pred cccccccCCCCceEEEEEEeCCC---CCCCEEEecccCCCeeEEECCcccccccccccccCCCccccccccccchhhhcc
Confidence 55432222245999999999984 678 99999999999999999999999987
Q ss_pred --CCceEEE-eCccccCCCCcEEEEEEeec-CCceeEEeec
Q psy12280 708 --SPYQTLY-LPAPLLHLGQNKISVFEHYR-RAARLSFTDK 744 (758)
Q Consensus 708 --GPQ~tLY-VP~~~Lk~G~N~IvvfE~~~-~~~~i~f~~~ 744 (758)
||||+|| ||++|||+|+|+|||||+++ .+..|+|...
T Consensus 686 cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~I~~~~~ 726 (840)
T PLN03059 686 CGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKR 726 (840)
T ss_pred CCCceeEEEeCcHHHhccCCceEEEEEecCCCCCceEEEEe
Confidence 9999999 99999999999999999976 4577888765
No 2
>KOG0496|consensus
Probab=100.00 E-value=2.1e-127 Score=1075.88 Aligned_cols=578 Identities=31% Similarity=0.539 Sum_probs=488.4
Q ss_pred eeeEeecCCCceEEECCEEeEEEEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHH
Q psy12280 115 NTGLQYDDNPNTFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFV 194 (758)
Q Consensus 115 ~~~v~~d~~~~~f~lnGkp~~i~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~ 194 (758)
++.|+||+ ++|++||+|++++||++||+|++|++|+++|+|+|++|+|+|+||||||.|||+||+|||+|+ .||.
T Consensus 17 ~~~v~yd~--~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~---~Dlv 91 (649)
T KOG0496|consen 17 SFNVTYDK--RSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGR---YDLV 91 (649)
T ss_pred eeEEeccc--cceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccch---hHHH
Confidence 88999999 999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHCCceEEecCCCccccccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEec
Q psy12280 195 KFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLG 274 (758)
Q Consensus 195 ~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQ 274 (758)
+||++|++.||+||||+||||||||++||+|.||...|+|.+||+|++|+++|++|+++|+++|++++++|| |||||+|
T Consensus 92 kFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qG-GPIIl~Q 170 (649)
T KOG0496|consen 92 KFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQG-GPIILVQ 170 (649)
T ss_pred HHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcC-CCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cccccccCCCCcchHHHHHHHHHHHHhc-CCCcceEEcCCCC--CCCCCCC-ccc-ceeecccCChHHHHHHhhhcCCCC
Q psy12280 275 VENELAVLGPNVADKNYMRELVAMLRSN-GIRSPLFTADDPS--MGDSGSL-IED-VLYAANILYAGEELRKLSYMQPNK 349 (758)
Q Consensus 275 IENEyg~~~~y~~d~~Y~~~L~~~~~~~-G~~vpl~T~dg~~--~~~~G~~-~~~-vl~t~nf~~~~~~f~~~~~~~P~~ 349 (758)
||||||. |.+++.+..+++ +-++.++++++.. +++|++. +|+ ++.+||.-.+.+ ...+..+|++
T Consensus 171 IENEYG~---------~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~--~f~~pn~~~k 239 (649)
T KOG0496|consen 171 IENEYGN---------YLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGD--TFKRPNSPNK 239 (649)
T ss_pred eechhhH---------HHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchh--hhccCCCCCC
Confidence 9999996 678888888876 7778889888865 8999873 333 445566555433 3345789999
Q ss_pred CceeeecccccccccCCCCCCCCChHHHHHHHHHHHhCC-ceeeeeecccccCCCcCCC---CCCCC------------C
Q psy12280 350 PLMVMEWWTGWFDTWAKNRHNTFPTNEYEMTLQSLLEYP-VSLNLFMFHGGTSWGFYNG---ANIDK------------S 413 (758)
Q Consensus 350 P~~~sEf~~GWf~~WG~~~~~~~~~~~~~~~l~~~l~~G-~s~N~YMfhGGTNfG~~~G---a~~~~------------~ 413 (758)
|.|+||+|+|||++||+ +++.|++++++..+..++++| +++||||||||||||++|| |+.-. .
T Consensus 240 P~~wtE~wtgwf~~wGg-~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~dgl~~~pk 318 (649)
T KOG0496|consen 240 PLVWTENWTGWFTHWGG-PHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLDGLLRQPK 318 (649)
T ss_pred CceecccccchhhhhCC-CCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccchhhcCCC
Confidence 99999999999999999 999999999999999999998 5699999999999999999 55100 0
Q ss_pred CCCCCCccccCCCCCCCCCCCC-CchhHHHHH----HHHHHHhhccCCCCCCCCCCcccccccceecccccCccccccCC
Q psy12280 414 LDKYTPDTTSYDYDAPLTEGGD-YTAKYWITR----KYFLQVAQNLNISHPTPPEVLPKMAYDNVELGQQLTWHNLVSQI 488 (758)
Q Consensus 414 ~~~y~p~~TSYDYdAPi~E~G~-~t~Ky~~lR----~li~~~~~~~~~~~~~~P~~~~~~~y~~v~l~~~~~L~~~L~~~ 488 (758)
.+.+.+..|||||+||+.|+|+ .++||.++| +.++.+. +.+.+++|-..++..|++++++-..+++..+-..
T Consensus 319 ~ghlk~~hts~d~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~~---~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nt 395 (649)
T KOG0496|consen 319 YGHLKPLHTSYDYCEPALVAGDITTAKYGNLREACAAFLSNNN---GAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNT 395 (649)
T ss_pred ccccccchhhhhhcCccccccCcccccccchhhHHHHHHhcCC---CCCCCccccCCCccccCceeEEechhhcchhhhc
Confidence 1336788999999999999999 589999999 6666655 5777888888889999999988666666554220
Q ss_pred C--CcceeccCCCcccccccccCCCCCccceEEEeecccccCCCCCceeEecc-ccceEEEEEECCccccCCcCCcCCcc
Q psy12280 489 P--LEKIVVSPSLIPMEDLAVNNGTGQSFGYTLYRQPDWHIPTDQDAIMRIEG-RVADIAIVMVNQERQTVPLSDVQDLN 565 (758)
Q Consensus 489 ~--~~~~~~s~~P~~mE~l~~n~~~gQ~~GyvlYrt~~~~i~~~~~~~L~i~~-~~~D~a~Vfvng~~~~~~~~~~~~~~ 565 (758)
. ..+...+..|+++|.. +|.+|++||++. .+.+......|+| . +++|++||||||+
T Consensus 396 a~~~~~~~~~~e~~~~~~~------~~~~~~ll~~~~-~t~d~sd~t~~~i-~ls~g~~~hVfvNg~------------- 454 (649)
T KOG0496|consen 396 AKVMAQWISFTEPIPSEAV------GQSFGGLLEQTN-LTKDKSDTTSLKI-PLSLGHALHVFVNGE------------- 454 (649)
T ss_pred cccccccccccCCCccccc------cCcceEEEEEEe-eccccCCCceEee-cccccceEEEEECCE-------------
Confidence 0 1113567899999999 999999999998 2222223356777 7 9999999999999
Q ss_pred eeEEEEccceeEEEec------CCCCcEEEEEEeccCCCccccCcccccccccccccccCCceEEeCCccCCCCeeEE--
Q psy12280 566 EFGFWKTENAELLLNI------TRPANNIDILVENTGRVNYWLNDDFKYSNIKKGLGTSFDNVVTVNNARPQKIWLIY-- 637 (758)
Q Consensus 566 ~vG~l~~~~~~~~l~~------~~~~~~L~ILVEN~GRvNy~~~~~~~~~~~~KGI~~g~~~~V~L~g~~~L~~W~~~-- 637 (758)
++|++.++.....++. ..+.|+|+|||||+||+||. +|++++||| +| + |+|+|. -+.+|++.
T Consensus 455 ~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-----~~e~~~~Gi-~g--~-v~l~g~-~~l~~~~w~~ 524 (649)
T KOG0496|consen 455 FAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-----HFENDFKGI-LG--P-VYLNGL-IDLTWTKWPY 524 (649)
T ss_pred EeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-----ccccccccc-cc--c-eEEeee-eccceeecce
Confidence 9999999765444443 25679999999999999981 455669999 99 9 999998 66666543
Q ss_pred EccCCchhccc-------cCCccccccCCCCCCceEEEEEEeccCCCCCcceeeecCCceEEEEEECCeeceeeec-cCC
Q psy12280 638 ALEFEQDWVNG-------LSKFESVTSERNLPSPTLFQAILTITTLDDLRDTYLDMQDWTRGVVFVNGFNLGRYSR-LSP 709 (758)
Q Consensus 638 ~lpl~~~~~~~-------~~~w~~~~~~~~~~~p~fyr~tF~l~~~~~~~DTfLdm~gwgKG~v~VNG~nLGRYW~-iGP 709 (758)
.++|+++.... .++|...+....+.+.+||+ +|+++.+ +.||||||.|||||+|||||+||||||+ +||
T Consensus 525 ~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g--~~~t~Ldm~g~GKG~vwVNG~niGRYW~~~G~ 601 (649)
T KOG0496|consen 525 KVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSG--SEPTALDMNGWGKGQVWVNGQNIGRYWPSFGP 601 (649)
T ss_pred ecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCC--CCCeEEecCCCcceEEEECCcccccccCCCCC
Confidence 36776643211 13676544333233446666 9999976 6799999999999999999999999998 799
Q ss_pred ceEEEeCccccCCCCcEEEEEEeecCC-ceeEEeeccCC
Q psy12280 710 YQTLYLPAPLLHLGQNKISVFEHYRRA-ARLSFTDKPIV 747 (758)
Q Consensus 710 Q~tLYVP~~~Lk~G~N~IvvfE~~~~~-~~i~f~~~p~~ 747 (758)
|++||||++|||++.|.||||||+++. ..|+|+++++.
T Consensus 602 Q~~yhvPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~~~~ 640 (649)
T KOG0496|consen 602 QRTYHVPRSWLKPSGNLLVVFEEEGGDPNGISFVTRPVL 640 (649)
T ss_pred ceEEECcHHHhCcCCceEEEEEeccCCCccceEEEeEee
Confidence 999999999999999999999998754 56999999887
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=9.8e-96 Score=785.83 Aligned_cols=311 Identities=47% Similarity=0.906 Sum_probs=253.9
Q ss_pred eEEECCEEeEEEEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCc
Q psy12280 126 TFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDL 205 (758)
Q Consensus 126 ~f~lnGkp~~i~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL 205 (758)
+|+|||||++|+|||+||+|+|+++|+++|+||||+|||||+||||||+|||+||+|||+|. +||++||++|+|+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~---~dl~~f~~~a~~~gl 77 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGN---RDLDRFLDLAQENGL 77 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGG---G-HHHHHHHHHHTT-
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccch---hhHHHHHHHHHHcCc
Confidence 59999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred eEEecCCCccccccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCCCC
Q psy12280 206 FVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPN 285 (758)
Q Consensus 206 ~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~~y 285 (758)
+|||||||||||||++||+|.||++++.+++|++||.|+++|++|+++|+++++++|+++| |||||+|||||||. +
T Consensus 78 ~vilrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-GpII~vQvENEyg~---~ 153 (319)
T PF01301_consen 78 YVILRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNG-GPIIMVQVENEYGS---Y 153 (319)
T ss_dssp EEEEEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGT-SSEEEEEESSSGGC---T
T ss_pred EEEecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCC-CceehhhhhhhhCC---C
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999997 7
Q ss_pred cchHHHHHHHHHHHHhcCCC-cceEEcCCCC--CCCCCCCccc--ceeecccCC---hHHHHHHhhhcCCCCCceeeecc
Q psy12280 286 VADKNYMRELVAMLRSNGIR-SPLFTADDPS--MGDSGSLIED--VLYAANILY---AGEELRKLSYMQPNKPLMVMEWW 357 (758)
Q Consensus 286 ~~d~~Y~~~L~~~~~~~G~~-vpl~T~dg~~--~~~~G~~~~~--vl~t~nf~~---~~~~f~~~~~~~P~~P~~~sEf~ 357 (758)
+++++|++.|++++++.|++ ++++|+|++. ...++. +++ ++.+.+|.. ..+.|..+++.+|++|+|++|||
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~ 232 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGG-LPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFW 232 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC--TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEE
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCC-CCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEec
Confidence 89999999999999999998 6678888865 456666 888 888999876 35788999999999999999999
Q ss_pred cccccccCCCCCCCCChHHHHHHHHHHHhCCceeeeeecccccCCCcCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCc
Q psy12280 358 TGWFDTWAKNRHNTFPTNEYEMTLQSLLEYPVSLNLFMFHGGTSWGFYNGANIDKSLDKYTPDTTSYDYDAPLTEGGDYT 437 (758)
Q Consensus 358 ~GWf~~WG~~~~~~~~~~~~~~~l~~~l~~G~s~N~YMfhGGTNfG~~~Ga~~~~~~~~y~p~~TSYDYdAPi~E~G~~t 437 (758)
+|||++||+ +++.+++++++..+.++++.|.++||||||||||||+++|++.. + +|++|||||+|||+|+|++|
T Consensus 233 ~Gwf~~WG~-~~~~~~~~~~~~~l~~~l~~g~~~nyYM~hGGTNfG~~~ga~~~---~--~p~~TSYDY~ApI~E~G~~~ 306 (319)
T PF01301_consen 233 GGWFDHWGG-PHYTRPAEDVAADLARMLSKGNSLNYYMFHGGTNFGFWAGANYY---G--QPDITSYDYDAPIDEYGQLT 306 (319)
T ss_dssp SS---BTTS---HHHHHHHHHHHHHHHHHHCSEEEEEECE--B--TT-B-EETT---T--EEB-SB--TT-SB-TTS-B-
T ss_pred cccccccCC-CCccCCHHHHHHHHHHHHHhhcccceeeccccCCccccccCCCC---C--CCCcccCCcCCccCcCCCcC
Confidence 999999999 88888999999999999999999999999999999999999842 2 78999999999999999999
Q ss_pred hhHHHHHHHHHHH
Q psy12280 438 AKYWITRKYFLQV 450 (758)
Q Consensus 438 ~Ky~~lR~li~~~ 450 (758)
|||++||++|++|
T Consensus 307 ~Ky~~lr~l~~~~ 319 (319)
T PF01301_consen 307 PKYYELRRLHQKY 319 (319)
T ss_dssp HHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999875
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6e-45 Score=419.02 Aligned_cols=543 Identities=17% Similarity=0.148 Sum_probs=338.5
Q ss_pred eecCCCceEEECCEEeEEEEEeecCCCCChhhHHHHHHHHHHcCCCEEEE-ecccCcCCCCCCeeeeeCCCccccHHHHH
Q psy12280 119 QYDDNPNTFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVET-YIAWNLHEPLKDVYEFGDNNKDIDFVKFI 197 (758)
Q Consensus 119 ~~d~~~~~f~lnGkp~~i~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~t-Yv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl 197 (758)
+++. ..|.+||+|++++||++||+|+|++.|.+||++||++|+|+|++ |+.||+|||++|+|||+. +|+. |+
T Consensus 2 ~~~~--~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~~----~D~~-~l 74 (673)
T COG1874 2 SYDG--YSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFTW----LDEI-FL 74 (673)
T ss_pred cccc--cceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCccc----chHH-HH
Confidence 4566 88999999999999999999999999999999999999999999 999999999999999996 8999 99
Q ss_pred HHHHHCCceEEecCCC-ccccccCCCCCCcccccCCCcee---------ccCCHhHHHHHHHHHHHHHHHhhccccccCC
Q psy12280 198 KIAQEEDLFVIIRPGP-YICAEWDFGGMPSYLLREPGIKL---------RSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQ 267 (758)
Q Consensus 198 ~la~e~GL~VIlRpGP-YIcAEw~~GGlP~WL~~~p~i~~---------Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~ 267 (758)
++|++.||+||||||| .+|.+|..+++|.||..++.-.+ ..++|.|++++++ |+++|+++.+.||
T Consensus 75 ~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~----i~~~irer~~~~~- 149 (673)
T COG1874 75 ERAYKAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDR----ILQQIRERLYGNG- 149 (673)
T ss_pred HHHHhcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHH----HHHHHHHHHhccC-
Confidence 9999999999999999 99999999999999998755332 2467778888887 7777777777899
Q ss_pred CCEEEeccccccccCCCC--cchHHHHHHHHHHHHhcCCCcceEEcCCCCCCCCCCCccc--ceeecc-cCC--hHHHHH
Q psy12280 268 GPIIMLGVENELAVLGPN--VADKNYMRELVAMLRSNGIRSPLFTADDPSMGDSGSLIED--VLYAAN-ILY--AGEELR 340 (758)
Q Consensus 268 GpIImvQIENEyg~~~~y--~~d~~Y~~~L~~~~~~~G~~vpl~T~dg~~~~~~G~~~~~--vl~t~n-f~~--~~~~f~ 340 (758)
++||+||++||||++.|+ -|.+.+..||++.+-.. -.+....+..+..++ +.+ .+.+.+ +.. ....+-
T Consensus 150 ~~v~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l----~~ln~~w~t~~ws~t-~~~~~~i~~p~~~~e~~~~~~~l 224 (673)
T COG1874 150 PAVITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSL----DNLNEAWGTSFWSHT-YKDFDEIMSPNPFGELPLPGLYL 224 (673)
T ss_pred CceeEEEccCccCCccccccccHHHHHHHHHhCcchH----Hhhhhhhhhhhcccc-cccHHhhcCCCCccccCCccchh
Confidence 999999999999996544 46777777777654211 111111111122222 111 111111 111 111112
Q ss_pred HhhhcCCCC----Cceeeecccccc-cccCCCCCCCCC-hHHHHHHHHHHHhCCceeeeeecccccCCC------cCCCC
Q psy12280 341 KLSYMQPNK----PLMVMEWWTGWF-DTWAKNRHNTFP-TNEYEMTLQSLLEYPVSLNLFMFHGGTSWG------FYNGA 408 (758)
Q Consensus 341 ~~~~~~P~~----P~~~sEf~~GWf-~~WG~~~~~~~~-~~~~~~~l~~~l~~G~s~N~YMfhGGTNfG------~~~Ga 408 (758)
+.+++..++ +....|.+-+|| +.|.. ++-... .+.-...+.+.+..+.+-||||||+|++|+ |.+|+
T Consensus 225 d~~~f~~e~~~~~~~~~~~~~~~~~P~~pvt-~nl~~~~~~~~~~~~~~~ld~~swdny~~~~~~~~~~~~~h~l~r~~~ 303 (673)
T COG1874 225 DYRRFESEQILEFVREEGEAIKAYFPNRPVT-PNLLAAFKKFDAYKWEKVLDFASWDNYPAWHRGRDFTKFIHDLFRNGK 303 (673)
T ss_pred hHhhhhhhhhHHHHHHHHHHHHHhCCCCCCC-hhHhhhhhhcchHHHHHhcChhhhhhhhhhccccchhhhhHHHHHhhc
Confidence 233333333 556677777777 66754 222222 222334566777777778999999999999 99988
Q ss_pred CCCCC-CCCCCCccccCCCCCCCCCCCC---CchhHHHHHHHHHHHhhccCCCCCCCCCCcccc--cccceecccccCcc
Q psy12280 409 NIDKS-LDKYTPDTTSYDYDAPLTEGGD---YTAKYWITRKYFLQVAQNLNISHPTPPEVLPKM--AYDNVELGQQLTWH 482 (758)
Q Consensus 409 ~~~~~-~~~y~p~~TSYDYdAPi~E~G~---~t~Ky~~lR~li~~~~~~~~~~~~~~P~~~~~~--~y~~v~l~~~~~L~ 482 (758)
+.... .-..+|..|+|++.+.+.+.|. .+.+..+...-.-.+.. ...++-|. ...+ .+..| +++...++
T Consensus 304 ~~~~~~~me~~P~~vn~~~~n~~~~~G~~~l~s~~~~A~g~~~v~yf~---~r~s~~~~-e~~h~~v~~~v-~~~~~~~~ 378 (673)
T COG1874 304 QGQPFWLMEQLPSVVNWALYNKLKRPGALRLPSLQAVAHGADNVIYFQ---WRQSPSPR-EKSHDGVISPV-LSENTRLF 378 (673)
T ss_pred cCCceeeccCCcchhhhhhccCCCCCccccccccccccccCceEEEEE---eecCCChH-hhccCcccccc-cCcccccc
Confidence 72100 1124689999999999999998 44444444322222221 00011111 0000 00000 11111111
Q ss_pred ccccCCCCcceeccCCCcc--cccccccCCCCCccceEEEeecccccCCCCCceeEeccccceEEEEEECCccccCCcCC
Q psy12280 483 NLVSQIPLEKIVVSPSLIP--MEDLAVNNGTGQSFGYTLYRQPDWHIPTDQDAIMRIEGRVADIAIVMVNQERQTVPLSD 560 (758)
Q Consensus 483 ~~L~~~~~~~~~~s~~P~~--mE~l~~n~~~gQ~~GyvlYrt~~~~i~~~~~~~L~i~~~~~D~a~Vfvng~~~~~~~~~ 560 (758)
.-+.. ... ..++++ ||.. +|.+++++|+.+ .+ -.... ... .+.+++.+++.-.+
T Consensus 379 ~ev~~--vg~---~l~~~~~~~~~~------~~a~va~~~d~E-~~-Wa~~~--~~~-~~~~~~~Y~~~~~~-------- 434 (673)
T COG1874 379 REVAA--VGE---ELKSLPDVMEAR------VQAYVAILFDYE-SR-WAFED--EDG-GESSALRYPFGVLH-------- 434 (673)
T ss_pred chhhh--hhH---hhhccccccccc------cccceeEEeecc-cc-ccccc--ccc-cccccccchhhhhh--------
Confidence 11110 011 123334 7777 999999999776 21 11111 111 22334444444333
Q ss_pred cCCcceeEEEEccceeEE-Eec---CCCCcEEEE---EEeccCCCcc--ccCcccccccccccccccCCceEEeCCccCC
Q psy12280 561 VQDLNEFGFWKTENAELL-LNI---TRPANNIDI---LVENTGRVNY--WLNDDFKYSNIKKGLGTSFDNVVTVNNARPQ 631 (758)
Q Consensus 561 ~~~~~~vG~l~~~~~~~~-l~~---~~~~~~L~I---LVEN~GRvNy--~~~~~~~~~~~~KGI~~g~~~~V~L~g~~~L 631 (758)
+.-.+.+...... +.. .++-..|.+ .+++++++++ ...++ --....|+ +. + +..... .+
T Consensus 435 -----~~~~l~~~~i~vdvi~~~~~~~~y~~L~~p~l~~~~~~~~~r~~~f~~~--gG~~v~g~-~s--G-~~~e~~-~~ 502 (673)
T COG1874 435 -----LYEALIETGIPVDVILEGSELDGYKLLIVPVLYIVNSERVDRAKKFVEN--GGTLVLGP-RS--G-IVNEHD-FL 502 (673)
T ss_pred -----hHHHHHhhCCceeEecCcccccCceEEEEeeeeccchhhHhhHHHHHhc--CCeEEEee-ec--c-cccchh-ee
Confidence 2222222111111 111 123445555 8899999997 22210 00113444 22 2 333332 33
Q ss_pred CCeeEEEccCCchhccccCCccccccCCCCCCceEEEEEEeccCCCCCcceeeecCCceEEEEEECCeeceeeeccCCce
Q psy12280 632 KIWLIYALEFEQDWVNGLSKFESVTSERNLPSPTLFQAILTITTLDDLRDTYLDMQDWTRGVVFVNGFNLGRYSRLSPYQ 711 (758)
Q Consensus 632 ~~W~~~~lpl~~~~~~~~~~w~~~~~~~~~~~p~fyr~tF~l~~~~~~~DTfLdm~gwgKG~v~VNG~nLGRYW~iGPQ~ 711 (758)
..|.-.+++.+. . ..|.... .+.+.+.+-++.... + |++++++.|.+++=+.++..|||||..|++.
T Consensus 503 ~~~~~~g~~~d~-i----~~~~~~~----~~l~~~~~~~~~~~~---~-~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~ 569 (673)
T COG1874 503 VTGGYPGLLRDL-I----GIWVGEV----DQLPPNEVNVVVRNG---K-DTTYGLKLWRATVDGEGGTVLARFREDGYAG 569 (673)
T ss_pred ecCCCCcchHHh-c----Ccccccc----cccChhHhhhheecc---C-cceeccccceeeeeccCCeEEEEEeccCcCC
Confidence 344422233221 1 1122111 134666666666653 3 8999999999999999999999999999999
Q ss_pred EEEeCccccCCCCcEEEEEEee
Q psy12280 712 TLYLPAPLLHLGQNKISVFEHY 733 (758)
Q Consensus 712 tLYVP~~~Lk~G~N~IvvfE~~ 733 (758)
..+|++.++++|.+..++++..
T Consensus 570 ~~~v~~~~~~~g~~~~l~~~~~ 591 (673)
T COG1874 570 GPAVTRRWYGGGKAYYLGFRTS 591 (673)
T ss_pred CcccchhhhcCcceeEEEeccC
Confidence 9999999999999999999875
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.86 E-value=4.1e-21 Score=211.04 Aligned_cols=269 Identities=18% Similarity=0.237 Sum_probs=159.0
Q ss_pred eecCCCCChhhHHHHHHHHHHcCCCEEEE-ecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccc
Q psy12280 140 SIHYFRVRPEYWRDRLRKLRAMGANTVET-YIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAE 218 (758)
Q Consensus 140 ~~Hy~R~p~e~W~drL~k~Ka~GlNtV~t-Yv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAE 218 (758)
++++..+|++.|+++|++||++|+|+|++ .+.|+..||+||+|||+. |+++|++|+++||+|||+..
T Consensus 1 dy~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~------lD~~l~~a~~~Gi~viL~~~------ 68 (374)
T PF02449_consen 1 DYYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSW------LDRVLDLAAKHGIKVILGTP------ 68 (374)
T ss_dssp E--GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HH------HHHHHHHHHCTT-EEEEEEC------
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHH------HHHHHHHHHhccCeEEEEec------
Confidence 35678899999999999999999999996 577999999999999986 79999999999999999964
Q ss_pred cCCCCCCcccccC-CCcee----------------ccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEecccccccc
Q psy12280 219 WDFGGMPSYLLRE-PGIKL----------------RSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAV 281 (758)
Q Consensus 219 w~~GGlP~WL~~~-p~i~~----------------Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~ 281 (758)
.+..|.||.++ |++.. ..++|.|++++.+++++++++++. + +.||+|||+||++.
T Consensus 69 --~~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~-----~-p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 69 --TAAPPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGD-----H-PAVIGWQIDNEPGY 140 (374)
T ss_dssp --TTTS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT-----T-TTEEEEEECCSTTC
T ss_pred --ccccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccc-----c-ceEEEEEeccccCc
Confidence 56789999864 66532 135789999999988888777753 3 79999999999987
Q ss_pred CCCC--cchHH--------------------------------------------------------------HHHHHHH
Q psy12280 282 LGPN--VADKN--------------------------------------------------------------YMRELVA 297 (758)
Q Consensus 282 ~~~y--~~d~~--------------------------------------------------------------Y~~~L~~ 297 (758)
..|| .+.++ |++++++
T Consensus 141 ~~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~ 220 (374)
T PF02449_consen 141 HRCYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQAD 220 (374)
T ss_dssp TS--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4334 23333 4455555
Q ss_pred HHHhcCCCcceEEcCCCCCCCCCCC------cccceeecccCC-------------hHHHHHHhhhcCCCCCceeeeccc
Q psy12280 298 MLRSNGIRSPLFTADDPSMGDSGSL------IEDVLYAANILY-------------AGEELRKLSYMQPNKPLMVMEWWT 358 (758)
Q Consensus 298 ~~~~~G~~vpl~T~dg~~~~~~G~~------~~~vl~t~nf~~-------------~~~~f~~~~~~~P~~P~~~sEf~~ 358 (758)
.+|+...+.|+.++-.... ..+-+ .-++.. .|..+ ..-.....|...+++|.+++|..+
T Consensus 221 ~ir~~~p~~~vt~n~~~~~-~~~~d~~~~a~~~D~~~-~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~ 298 (374)
T PF02449_consen 221 IIREYDPDHPVTTNFMGSW-FNGIDYFKWAKYLDVVS-WDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQP 298 (374)
T ss_dssp HHHHHSTT-EEE-EE-TT----SS-HHHHGGGSSSEE-EEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--
T ss_pred HHHHhCCCceEEeCccccc-cCcCCHHHHHhhCCcce-eccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCC
Confidence 5555555544444322110 00000 001111 11100 111223345567899999999999
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHHHhCCce-eeeeecccccCCCcCCCCCCCCCCCCCCCccccCCCCCCCCCCC-CC
Q psy12280 359 GWFDTWAKNRHNTFPTNEYEMTLQSLLEYPVS-LNLFMFHGGTSWGFYNGANIDKSLDKYTPDTTSYDYDAPLTEGG-DY 436 (758)
Q Consensus 359 GWf~~WG~~~~~~~~~~~~~~~l~~~l~~G~s-~N~YMfhGGTNfG~~~Ga~~~~~~~~y~p~~TSYDYdAPi~E~G-~~ 436 (758)
| -..|+. ......+..+...+-..++.|+. +.|+-+ ..-.+| +. .| ..+-|+-+| ..
T Consensus 299 g-~~~~~~-~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g----~E------~~--------~~g~~~~dg~~~ 357 (374)
T PF02449_consen 299 G-PVNWRP-YNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFG----AE------QF--------HGGLVDHDGREP 357 (374)
T ss_dssp S---SSSS-S-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSS----TT------TT--------S--SB-TTS--B
T ss_pred C-CCCCcc-CCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCC----ch------hh--------hcccCCccCCCC
Confidence 9 666765 44445566666666677899996 777666 222222 21 11 145667779 88
Q ss_pred chhHHHHHHHHHHHh
Q psy12280 437 TAKYWITRKYFLQVA 451 (758)
Q Consensus 437 t~Ky~~lR~li~~~~ 451 (758)
+++|.+++++-+++.
T Consensus 358 ~~~~~e~~~~~~~l~ 372 (374)
T PF02449_consen 358 TRRYREVAQLGRELK 372 (374)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh
Confidence 999999999877654
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.69 E-value=1.3e-15 Score=162.51 Aligned_cols=199 Identities=21% Similarity=0.269 Sum_probs=125.8
Q ss_pred eecCCCceEEECCEEeEEEEEeecCC------CCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCcccc
Q psy12280 119 QYDDNPNTFLLNGKEFRILSGSIHYF------RVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDID 192 (758)
Q Consensus 119 ~~d~~~~~f~lnGkp~~i~sG~~Hy~------R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~D 192 (758)
...+ +.|+|||||++|.|.+.|.. .++++.|+++|++||+||+|+||+ .|-|.+
T Consensus 2 ev~~--~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~~------------- 61 (298)
T PF02836_consen 2 EVKD--GGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPPS------------- 61 (298)
T ss_dssp EEET--TEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS--S-------------
T ss_pred EEEC--CEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccCc-------------
Confidence 4456 99999999999999999983 467999999999999999999999 888875
Q ss_pred HHHHHHHHHHCCceEEecCCCccccccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEE
Q psy12280 193 FVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIM 272 (758)
Q Consensus 193 L~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIIm 272 (758)
.+|+++|+++||+|+..+.=.-++.|..-|. ......+|.+.+.+.+-+++++.+.+ |+ ++|||
T Consensus 62 -~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~-----NH-PSIi~ 125 (298)
T PF02836_consen 62 -PRFYDLCDELGILVWQEIPLEGHGSWQDFGN---------CNYDADDPEFRENAEQELREMVRRDR-----NH-PSIIM 125 (298)
T ss_dssp -HHHHHHHHHHT-EEEEE-S-BSCTSSSSTSC---------TSCTTTSGGHHHHHHHHHHHHHHHHT-----T--TTEEE
T ss_pred -HHHHHHHhhcCCEEEEeccccccCccccCCc---------cccCCCCHHHHHHHHHHHHHHHHcCc-----Cc-Cchhe
Confidence 8999999999999998862111233332111 12345788888877765555554443 66 99999
Q ss_pred eccccccccCCCCcchHHHHHHHHHHHHhcCCCcceEEcCCC-C-CCCCCCCcccceeecccC-ChHHHHH-Hhhh--cC
Q psy12280 273 LGVENELAVLGPNVADKNYMRELVAMLRSNGIRSPLFTADDP-S-MGDSGSLIEDVLYAANIL-YAGEELR-KLSY--MQ 346 (758)
Q Consensus 273 vQIENEyg~~~~y~~d~~Y~~~L~~~~~~~G~~vpl~T~dg~-~-~~~~G~~~~~vl~t~nf~-~~~~~f~-~~~~--~~ 346 (758)
|-+.||-. ...+++.|.+++++.+.++|+..+.+. . .+... ..+......-. .....+. .+.. ..
T Consensus 126 W~~gNE~~-------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~--~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 196 (298)
T PF02836_consen 126 WSLGNESD-------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDI--IFDIYSGWYNGYGDPEDFEKYLEDWYKY 196 (298)
T ss_dssp EEEEESSH-------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSC--EECSETTTSSSCCHHHHHHHHHHHHHHH
T ss_pred eecCccCc-------cccchhHHHHHHHhcCCCCceeecccccccccccc--cccccccccCCcccHHHHHHHHHhcccc
Confidence 99999993 356789999999999999998655552 1 11110 01111111101 0111222 2222 46
Q ss_pred CCCCceeeeccccccc
Q psy12280 347 PNKPLMVMEWWTGWFD 362 (758)
Q Consensus 347 P~~P~~~sEf~~GWf~ 362 (758)
+++|++.+||....+.
T Consensus 197 ~~kP~i~sEyg~~~~~ 212 (298)
T PF02836_consen 197 PDKPIIISEYGADAYN 212 (298)
T ss_dssp CTS-EEEEEESEBBSS
T ss_pred CCCCeEehhccccccc
Confidence 9999999999765543
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.63 E-value=6.5e-14 Score=163.36 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=114.7
Q ss_pred ccceeeeEeecCCCceEEECCEEeEEEEEeecCC------CCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeee
Q psy12280 111 KNKENTGLQYDDNPNTFLLNGKEFRILSGSIHYF------RVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEF 184 (758)
Q Consensus 111 ~~~r~~~v~~d~~~~~f~lnGkp~~i~sG~~Hy~------R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF 184 (758)
...|++++ ++ ..|+|||+|+++.|.+.|.. .++++.|+++|++||++|+|+||+ .|-|.+
T Consensus 273 ~GfR~i~~--~~--~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~~----- 338 (604)
T PRK10150 273 FGIRSVAV--KG--GQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPYS----- 338 (604)
T ss_pred eEEEEEEE--eC--CEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCCC-----
Confidence 45677777 45 78999999999999999973 366889999999999999999999 687765
Q ss_pred eCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCccccc-CCCceeccCCHhHHHHHHHHHHHHHHHhhcccc
Q psy12280 185 GDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLR-EPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQF 263 (758)
Q Consensus 185 ~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~WL~~-~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~ 263 (758)
.+|+++|+|+||+|+.+..=+-...|...+. .|-.. .+.-..-..+|.+.++..+ .+..++++.
T Consensus 339 ---------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~mv~r~-- 403 (604)
T PRK10150 339 ---------EEMLDLADRHGIVVIDETPAVGLNLSFGAGL-EAGNKPKETYSEEAVNGETQQAHLQ---AIRELIARD-- 403 (604)
T ss_pred ---------HHHHHHHHhcCcEEEEecccccccccccccc-cccccccccccccccchhHHHHHHH---HHHHHHHhc--
Confidence 7999999999999998862100111111000 00000 0110011123444443332 233344332
Q ss_pred ccCCCCEEEeccccccccCCCCcchHHHHHHHHHHHHhcCCCcceEEcC
Q psy12280 264 IDGQGPIIMLGVENELAVLGPNVADKNYMRELVAMLRSNGIRSPLFTAD 312 (758)
Q Consensus 264 ~nG~GpIImvQIENEyg~~~~y~~d~~Y~~~L~~~~~~~G~~vpl~T~d 312 (758)
.|+ ++||||.+.||.... ......+++.|.+.+|+.+.++|+..++
T Consensus 404 ~NH-PSIi~Ws~gNE~~~~--~~~~~~~~~~l~~~~k~~DptR~vt~~~ 449 (604)
T PRK10150 404 KNH-PSVVMWSIANEPASR--EQGAREYFAPLAELTRKLDPTRPVTCVN 449 (604)
T ss_pred cCC-ceEEEEeeccCCCcc--chhHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 377 999999999997541 1234578899999999999999986554
No 8
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.59 E-value=1.5e-13 Score=168.62 Aligned_cols=268 Identities=15% Similarity=0.180 Sum_probs=166.6
Q ss_pred eccceeeeEeecCCCceEEECCEEeEEEEEeecCC------CCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeee
Q psy12280 110 EKNKENTGLQYDDNPNTFLLNGKEFRILSGSIHYF------RVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYE 183 (758)
Q Consensus 110 ~~~~r~~~v~~d~~~~~f~lnGkp~~i~sG~~Hy~------R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fd 183 (758)
....|++++. + ..|+|||||+++.|.+.|.. .++++.|+++|+.||++|+|+||+ .|-|..
T Consensus 314 ~~GfR~iei~--~--~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~~---- 380 (1021)
T PRK10340 314 RVGFRDIKVR--D--GLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPND---- 380 (1021)
T ss_pred eeEEEEEEEE--C--CEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCCC----
Confidence 4567788774 5 78999999999999999863 357899999999999999999999 677764
Q ss_pred eeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhcccc
Q psy12280 184 FGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQF 263 (758)
Q Consensus 184 F~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~ 263 (758)
.+|+++|+|+||+|+.+. |..|..|...+ ....-+++|.|.+++. +++..++++.
T Consensus 381 ----------~~fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~~~~---~~~~~mV~Rd-- 435 (1021)
T PRK10340 381 ----------PRFYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEKVYV---DRIVRHIHAQ-- 435 (1021)
T ss_pred ----------HHHHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHHHHH---HHHHHHHHhC--
Confidence 799999999999999986 44333332111 0001135666654332 3344444443
Q ss_pred ccCCCCEEEeccccccccCCCCcchHHHHHHHHHHHHhcCCCcceEEcCCCCCCCCCCCcccceeecccCChHHHHHHhh
Q psy12280 264 IDGQGPIIMLGVENELAVLGPNVADKNYMRELVAMLRSNGIRSPLFTADDPSMGDSGSLIEDVLYAANILYAGEELRKLS 343 (758)
Q Consensus 264 ~nG~GpIImvQIENEyg~~~~y~~d~~Y~~~L~~~~~~~G~~vpl~T~dg~~~~~~G~~~~~vl~t~nf~~~~~~f~~~~ 343 (758)
.|+ ++||||.+.||-+. + . .++.|.+.+|+.+.++|+....+.. .. ..+++.. .+... +.+..+.
T Consensus 436 rNH-PSIi~WslGNE~~~----g--~-~~~~~~~~~k~~DptR~v~~~~~~~----~~-~~Dv~~~-~Y~~~-~~~~~~~ 500 (1021)
T PRK10340 436 KNH-PSIIIWSLGNESGY----G--C-NIRAMYHAAKALDDTRLVHYEEDRD----AE-VVDVIST-MYTRV-ELMNEFG 500 (1021)
T ss_pred CCC-CEEEEEECccCccc----c--H-HHHHHHHHHHHhCCCceEEeCCCcC----cc-ccceecc-ccCCH-HHHHHHH
Confidence 377 99999999999864 1 2 2478889999999999874432110 01 1223221 12122 2344444
Q ss_pred hcCCCCCceeeecccccccccCCCCCCCCChHHHHHHHHH--HHhCCce-----ee---------eeecccccCCCcCCC
Q psy12280 344 YMQPNKPLMVMEWWTGWFDTWAKNRHNTFPTNEYEMTLQS--LLEYPVS-----LN---------LFMFHGGTSWGFYNG 407 (758)
Q Consensus 344 ~~~P~~P~~~sEf~~GWf~~WG~~~~~~~~~~~~~~~l~~--~l~~G~s-----~N---------~YMfhGGTNfG~~~G 407 (758)
+..+++|++.+||--+ .|. .. -..+++-..+.. .+..|.- +. -|+.+||. ||-+
T Consensus 501 ~~~~~kP~i~~Ey~ha----mgn-~~--g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd-~g~~-- 570 (1021)
T PRK10340 501 EYPHPKPRILCEYAHA----MGN-GP--GGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNGNVWYKYGGD-YGDY-- 570 (1021)
T ss_pred hCCCCCcEEEEchHhc----cCC-CC--CCHHHHHHHHHhCCceeEEeeeecCcccccccCCCCCEEEEECCC-CCCC--
Confidence 5557899999999422 222 11 113444443332 1222210 11 13334442 3311
Q ss_pred CCCCCCCCCCCCccccCCCCCCCCCCCCCchhHHHHHHHHHHHh
Q psy12280 408 ANIDKSLDKYTPDTTSYDYDAPLTEGGDYTAKYWITRKYFLQVA 451 (758)
Q Consensus 408 a~~~~~~~~y~p~~TSYDYdAPi~E~G~~t~Ky~~lR~li~~~~ 451 (758)
|...++--+.-++-+|.+.|.|+++|++.+-+.
T Consensus 571 -----------p~~~~f~~~Glv~~dr~p~p~~~e~k~~~~pv~ 603 (1021)
T PRK10340 571 -----------PNNYNFCIDGLIYPDQTPGPGLKEYKQVIAPVK 603 (1021)
T ss_pred -----------CCCcCcccceeECCCCCCChhHHHHHHhcceEE
Confidence 222344445677888999999999999887544
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.44 E-value=5.3e-12 Score=154.96 Aligned_cols=272 Identities=14% Similarity=0.128 Sum_probs=164.5
Q ss_pred eccceeeeEeecCCCceEEECCEEeEEEEEeecCC------CCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeee
Q psy12280 110 EKNKENTGLQYDDNPNTFLLNGKEFRILSGSIHYF------RVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYE 183 (758)
Q Consensus 110 ~~~~r~~~v~~d~~~~~f~lnGkp~~i~sG~~Hy~------R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fd 183 (758)
...-|++++ ++ ..|+|||||+++.|...|.. +++++.|+++|+.||++|+|+||+ .|-|..
T Consensus 330 ~~GfR~iei--~~--~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~~---- 396 (1027)
T PRK09525 330 DVGFRKVEI--EN--GLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPNH---- 396 (1027)
T ss_pred eEEEEEEEE--EC--CEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCCC----
Confidence 355677777 45 78999999999999999952 567999999999999999999999 677654
Q ss_pred eeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhcccc
Q psy12280 184 FGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQF 263 (758)
Q Consensus 184 F~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~ 263 (758)
.+|+++|+|+||+|+.+..=..|+-+ |.. . -.++|.|.+++ .+++..++.+..
T Consensus 397 ----------p~fydlcDe~GilV~dE~~~e~hg~~-----~~~---~-----~~~dp~~~~~~---~~~~~~mV~Rdr- 449 (1027)
T PRK09525 397 ----------PLWYELCDRYGLYVVDEANIETHGMV-----PMN---R-----LSDDPRWLPAM---SERVTRMVQRDR- 449 (1027)
T ss_pred ----------HHHHHHHHHcCCEEEEecCccccCCc-----ccc---C-----CCCCHHHHHHH---HHHHHHHHHhCC-
Confidence 79999999999999988621111111 110 0 12567776554 345555555443
Q ss_pred ccCCCCEEEeccccccccCCCCcchHHHHHHHHHHHHhcCCCcceEEcCCCCCCCCCCCcccceeecccCC-----hHHH
Q psy12280 264 IDGQGPIIMLGVENELAVLGPNVADKNYMRELVAMLRSNGIRSPLFTADDPSMGDSGSLIEDVLYAANILY-----AGEE 338 (758)
Q Consensus 264 ~nG~GpIImvQIENEyg~~~~y~~d~~Y~~~L~~~~~~~G~~vpl~T~dg~~~~~~G~~~~~vl~t~nf~~-----~~~~ 338 (758)
|+ ++||||.+.||-+. + ...+.|.+.+|+.+.++|+....+...-.....+...++..+... ....
T Consensus 450 -NH-PSIi~WSlgNE~~~----g---~~~~~l~~~~k~~DptRpV~y~~~~~~~~~~Dv~~~my~~~~~~~~~~~~~~~~ 520 (1027)
T PRK09525 450 -NH-PSIIIWSLGNESGH----G---ANHDALYRWIKSNDPSRPVQYEGGGADTAATDIICPMYARVDEDQPFPAVPKWS 520 (1027)
T ss_pred -CC-CEEEEEeCccCCCc----C---hhHHHHHHHHHhhCCCCcEEECCCCCCCCccccccCCCCCccccccccccchHH
Confidence 77 99999999999764 1 235678888999999999866543211000000112222332211 1112
Q ss_pred HHHhhhc-CCCCCceeeecccccccccCCCCCCCCChHHHHHHHHH--HHhCCce-----e---------eeeecccccC
Q psy12280 339 LRKLSYM-QPNKPLMVMEWWTGWFDTWAKNRHNTFPTNEYEMTLQS--LLEYPVS-----L---------NLFMFHGGTS 401 (758)
Q Consensus 339 f~~~~~~-~P~~P~~~sEf~~GWf~~WG~~~~~~~~~~~~~~~l~~--~l~~G~s-----~---------N~YMfhGGTN 401 (758)
+....+. .+++|++.+||- ...|. .. -.-+++-+.+.. .+..|.- . .-|..+||-
T Consensus 521 ~~~~~~~~~~~kP~i~cEY~----Hamgn-~~--g~l~~yw~~~~~~~~~~GgfIW~w~Dqg~~~~~~~G~~~~~YGGD- 592 (1027)
T PRK09525 521 IKKWISLPGETRPLILCEYA----HAMGN-SL--GGFAKYWQAFRQYPRLQGGFIWDWVDQGLTKYDENGNPWWAYGGD- 592 (1027)
T ss_pred HHHHHhcCCCCCCEEEEech----hcccC-cC--ccHHHHHHHHhcCCCeeEEeeEeccCcceeeECCCCCEEEEECCc-
Confidence 3332232 567999999993 12332 11 123444443321 2222220 1 135556653
Q ss_pred CCcCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCchhHHHHHHHHHHHh
Q psy12280 402 WGFYNGANIDKSLDKYTPDTTSYDYDAPLTEGGDYTAKYWITRKYFLQVA 451 (758)
Q Consensus 402 fG~~~Ga~~~~~~~~y~p~~TSYDYdAPi~E~G~~t~Ky~~lR~li~~~~ 451 (758)
||-.. +.+.| =-|--|.-++.++|++.++|++++-+.
T Consensus 593 fgd~p------~d~nF-------c~dGlv~~dR~p~p~~~E~K~v~qpv~ 629 (1027)
T PRK09525 593 FGDTP------NDRQF-------CMNGLVFPDRTPHPALYEAKHAQQFFQ 629 (1027)
T ss_pred CCCCC------CCCCc-------eeceeECCCCCCCccHHHHHhhcCcEE
Confidence 44211 01111 124456667889999999998887543
No 10
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=99.23 E-value=2.5e-11 Score=112.77 Aligned_cols=65 Identities=32% Similarity=0.453 Sum_probs=52.2
Q ss_pred CCceEEEEEEeccCCCCCcceeee-----cCCceEEEEEECCeeceeee-ccCCceEEEeCccccCCCCcEEEEE
Q psy12280 662 PSPTLFQAILTITTLDDLRDTYLD-----MQDWTRGVVFVNGFNLGRYS-RLSPYQTLYLPAPLLHLGQNKISVF 730 (758)
Q Consensus 662 ~~p~fyr~tF~l~~~~~~~DTfLd-----m~gwgKG~v~VNG~nLGRYW-~iGPQ~tLYVP~~~Lk~G~N~Ivvf 730 (758)
++..|||++|+.. ..|+.|. ...+.++.|||||++||||| .+|||++|+||+++|+.++|.|+|+
T Consensus 34 ~g~~~Yrg~F~~~----~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q~tf~~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 34 AGYLWYRGTFTGT----GQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQTTFSVPAGILKYGNNVLVVL 104 (111)
T ss_dssp SCEEEEEEEEETT----TEEEEEE-EEECSSTTEEEEEEETTEEEEEEETTTECCEEEEE-BTTBTTCEEEEEEE
T ss_pred CCCEEEEEEEeCC----CcceeEEEEeccCCCceEEEEEECCEEeeeecCCCCccEEEEeCceeecCCCEEEEEE
Confidence 6899999999754 3455555 35688999999999999999 5999999999999999885554454
No 11
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=2e-10 Score=137.31 Aligned_cols=123 Identities=24% Similarity=0.280 Sum_probs=98.1
Q ss_pred ccceeeeEeecCCCceEEECCEEeEEEEEeecCCC-----C-ChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeee
Q psy12280 111 KNKENTGLQYDDNPNTFLLNGKEFRILSGSIHYFR-----V-RPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEF 184 (758)
Q Consensus 111 ~~~r~~~v~~d~~~~~f~lnGkp~~i~sG~~Hy~R-----~-p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF 184 (758)
..-|++.|. . ..|+|||||+++.|...|.+- . ..+.-+++|++||++|+|+||| .|-|..
T Consensus 281 iGfR~iei~--~--~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt-----sHyP~~----- 346 (808)
T COG3250 281 IGFRTVEIK--D--GLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT-----SHYPNS----- 346 (808)
T ss_pred eccEEEEEE--C--CeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe-----cCCCCC-----
Confidence 566777775 4 689999999999999999943 2 2555999999999999999999 599986
Q ss_pred eCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccc
Q psy12280 185 GDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFI 264 (758)
Q Consensus 185 ~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~ 264 (758)
..|++||+++||+||..+ ..||-.+ | ++|.|++.+.. ++..++.+..
T Consensus 347 ---------~~~ydLcDelGllV~~Ea----~~~~~~~--~-------------~~~~~~k~~~~---~i~~mver~k-- 393 (808)
T COG3250 347 ---------EEFYDLCDELGLLVIDEA----MIETHGM--P-------------DDPEWRKEVSE---EVRRMVERDR-- 393 (808)
T ss_pred ---------HHHHHHHHHhCcEEEEec----chhhcCC--C-------------CCcchhHHHHH---HHHHHHHhcc--
Confidence 899999999999999997 5555432 2 67777776654 4555555443
Q ss_pred cCCCCEEEecccccccc
Q psy12280 265 DGQGPIIMLGVENELAV 281 (758)
Q Consensus 265 nG~GpIImvQIENEyg~ 281 (758)
|+ ++||||.+.||-|.
T Consensus 394 nH-PSIiiWs~gNE~~~ 409 (808)
T COG3250 394 NH-PSIIIWSLGNESGH 409 (808)
T ss_pred CC-CcEEEEeccccccC
Confidence 77 99999999999764
No 12
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.98 E-value=5.5e-09 Score=108.52 Aligned_cols=160 Identities=17% Similarity=0.249 Sum_probs=108.7
Q ss_pred ECCEEeEEEEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcC-CCCCCe-eeeeCCCccccHHHHHHHHHHCCce
Q psy12280 129 LNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLH-EPLKDV-YEFGDNNKDIDFVKFIKIAQEEDLF 206 (758)
Q Consensus 129 lnGkp~~i~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~H-EP~~G~-fdF~g~~~~~DL~~Fl~la~e~GL~ 206 (758)
.+|+++.+.|-+.|... +..-++.+++||++|+|+||+.+.|... ++.++. ++=+.. ..|+++|+.|+++||+
T Consensus 3 ~~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~---~~ld~~v~~a~~~gi~ 77 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYL---ARLDRIVDAAQAYGIY 77 (281)
T ss_dssp TTSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHH---HHHHHHHHHHHHTT-E
T ss_pred CCCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHH---HHHHHHHHHHHhCCCe
Confidence 37999999999999321 1278899999999999999999999544 467654 544444 7899999999999999
Q ss_pred EEecCCCccccccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCCCC-
Q psy12280 207 VIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPN- 285 (758)
Q Consensus 207 VIlRpGPYIcAEw~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~~y- 285 (758)
||+.. ++ .|.|...... -........|++.+...++.+...+ .+|++++|=||-......
T Consensus 78 vild~----h~------~~~w~~~~~~-------~~~~~~~~~~~~~~~~~la~~y~~~--~~v~~~el~NEP~~~~~~~ 138 (281)
T PF00150_consen 78 VILDL----HN------APGWANGGDG-------YGNNDTAQAWFKSFWRALAKRYKDN--PPVVGWELWNEPNGGNDDA 138 (281)
T ss_dssp EEEEE----EE------STTCSSSTST-------TTTHHHHHHHHHHHHHHHHHHHTTT--TTTEEEESSSSGCSTTSTT
T ss_pred EEEEe----cc------Cccccccccc-------cccchhhHHHHHhhhhhhccccCCC--CcEEEEEecCCccccCCcc
Confidence 99876 22 1666332211 1112224444555555555544333 689999999999762110
Q ss_pred -------cchHHHHHHHHHHHHhcCCCcceEEcC
Q psy12280 286 -------VADKNYMRELVAMLRSNGIRSPLFTAD 312 (758)
Q Consensus 286 -------~~d~~Y~~~L~~~~~~~G~~vpl~T~d 312 (758)
..-.++.+.+.+.+|+.+.+.+++...
T Consensus 139 ~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 139 NWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp TTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred ccccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 011456677777889999987776554
No 13
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.56 E-value=2.3e-06 Score=92.43 Aligned_cols=258 Identities=17% Similarity=0.218 Sum_probs=127.3
Q ss_pred eecCCCceEE--ECCEEeEEEEEeecCCCC-----------ChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeee
Q psy12280 119 QYDDNPNTFL--LNGKEFRILSGSIHYFRV-----------RPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFG 185 (758)
Q Consensus 119 ~~d~~~~~f~--lnGkp~~i~sG~~Hy~R~-----------p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~ 185 (758)
+..+ +.|+ .+|++|+|.|..+.+-.. .++.|++++..||++|+||||+| ...|.
T Consensus 12 ~ikG--~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY----~vdp~------- 78 (314)
T PF03198_consen 12 EIKG--NKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVY----SVDPS------- 78 (314)
T ss_dssp EEET--TEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TT-------
T ss_pred EEEC--CEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEE----EeCCC-------
Confidence 3455 6777 789999999988877433 27899999999999999999996 23455
Q ss_pred CCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcccccCCCceeccCCH--hHHHHHHHHHHHHHHHhhcccc
Q psy12280 186 DNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDP--KYLNRVRQYFNNLIPLLEPLQF 263 (758)
Q Consensus 186 g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~~Rt~dp--~y~~~v~~w~~~l~~~l~~~~~ 263 (758)
.|-++++++.++.|+|||+-.+. |...+...+| .|-...-.-+.+++..++++
T Consensus 79 -----~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y-- 133 (314)
T PF03198_consen 79 -----KNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKY-- 133 (314)
T ss_dssp -----S--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT---
T ss_pred -----CCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccC--
Confidence 67799999999999999988632 2222333445 44333222233466777766
Q ss_pred ccCCCCEEEeccccccccCCCC----cchHHHHHHHHHHHHhcCCC-cce--EEcCCCC-------CCCCCCCccc----
Q psy12280 264 IDGQGPIIMLGVENELAVLGPN----VADKNYMRELVAMLRSNGIR-SPL--FTADDPS-------MGDSGSLIED---- 325 (758)
Q Consensus 264 ~nG~GpIImvQIENEyg~~~~y----~~d~~Y~~~L~~~~~~~G~~-vpl--~T~dg~~-------~~~~G~~~~~---- 325 (758)
.+++++-+.||.-....- .+-++..+.+|+..++.+.. +|+ -++|... .+.||.. +.
T Consensus 134 ----~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPVGYsaaD~~~~r~~~a~Yl~Cg~~-~~~iDf 208 (314)
T PF03198_consen 134 ----DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPVGYSAADDAEIRQDLANYLNCGDD-DERIDF 208 (314)
T ss_dssp ----TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----EEEEE---TTTHHHHHHHTTBTT------S-
T ss_pred ----CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCceeEEccCChhHHHHHHHHhcCCCc-ccccce
Confidence 699999999998642111 23466777888888888874 466 3455542 3788862 11
Q ss_pred ----ceeecccCC-hHHHHHHhhhc--CCCCCceeeecccccccccCCCCCCCCChHHHHHHHHHHHhCCce-eeeeecc
Q psy12280 326 ----VLYAANILY-AGEELRKLSYM--QPNKPLMVMEWWTGWFDTWAKNRHNTFPTNEYEMTLQSLLEYPVS-LNLFMFH 397 (758)
Q Consensus 326 ----vl~t~nf~~-~~~~f~~~~~~--~P~~P~~~sEf~~GWf~~WG~~~~~~~~~~~~~~~l~~~l~~G~s-~N~YMfh 397 (758)
.+.-|+-.. ....|..+.+. .-.-|+|-+||.. +....|.=.++...+..-+..=.| -..|+|.
T Consensus 209 ~g~N~Y~WCg~Stf~~SGy~~l~~~f~~y~vPvffSEyGC--------n~~~pR~f~ev~aly~~~Mt~v~SGGivYEy~ 280 (314)
T PF03198_consen 209 FGLNSYEWCGDSTFETSGYDRLTKEFSNYSVPVFFSEYGC--------NTVTPRTFTEVPALYSPEMTDVWSGGIVYEYF 280 (314)
T ss_dssp EEEEE----SS--HHHHSHHHHHHHHTT-SS-EEEEEE-----------SSSS---THHHHHTSHHHHTTEEEEEES-SB
T ss_pred eeeccceecCCCccccccHHHHHHHhhCCCCCeEEcccCC--------CCCCCccchHhHHhhCccchhheeceEEEEEe
Confidence 112222111 22234444332 2357999999954 223334444444333221222122 3456666
Q ss_pred cccC-CCcCCCCCCCCCCCCCCCccccCCCCCCCCCCCC--CchhHHHHHHHHHHH
Q psy12280 398 GGTS-WGFYNGANIDKSLDKYTPDTTSYDYDAPLTEGGD--YTAKYWITRKYFLQV 450 (758)
Q Consensus 398 GGTN-fG~~~Ga~~~~~~~~y~p~~TSYDYdAPi~E~G~--~t~Ky~~lR~li~~~ 450 (758)
-..| ||.- +++ ..|. ..+.|..|++.+++.
T Consensus 281 ~e~n~yGlV-----------------~~~------~~~~~~~~~Df~~L~~~~~~~ 313 (314)
T PF03198_consen 281 QEANNYGLV-----------------EIS------GDGSVTTLDDFDNLKSQYAKV 313 (314)
T ss_dssp --SSS--SE-----------------EE-------TTS-EEE-THHHHHHHHHHH-
T ss_pred ccCCceEEE-----------------EEc------CCCCeeecHhHHHHHHHHHhc
Confidence 5433 3322 222 2333 357888998887764
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.56 E-value=1.4e-06 Score=91.79 Aligned_cols=221 Identities=15% Similarity=0.252 Sum_probs=133.0
Q ss_pred cCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcccccCCCceeccCCHhHHHHHHHHH
Q psy12280 172 WNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYF 251 (758)
Q Consensus 172 Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~ 251 (758)
|...||++|+|||+. ++++++.|+++||.|. ..+-+ |.. ..|.|+...+ .+...+++.+|+
T Consensus 3 W~~~ep~~G~~n~~~------~D~~~~~a~~~gi~v~--gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i 63 (254)
T smart00633 3 WDSTEPSRGQFNFSG------ADAIVNFAKENGIKVR--GHTLV---WHS-QTPDWVFNLS-------KETLLARLENHI 63 (254)
T ss_pred cccccCCCCccChHH------HHHHHHHHHHCCCEEE--EEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHH
Confidence 889999999999986 5889999999999983 32222 543 6899987542 234566777777
Q ss_pred HHHHHHhhccccccCCCCEEEeccccccccCC-------CC--cchHHHHHHHHHHHHhcCCCcceEEcCCCCCCCCCC-
Q psy12280 252 NNLIPLLEPLQFIDGQGPIIMLGVENELAVLG-------PN--VADKNYMRELVAMLRSNGIRSPLFTADDPSMGDSGS- 321 (758)
Q Consensus 252 ~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~-------~y--~~d~~Y~~~L~~~~~~~G~~vpl~T~dg~~~~~~G~- 321 (758)
++++.+++ |.|..|+|=||--... .+ ..+.+|+...-+.+|+++.++.|+.+|-........
T Consensus 64 ~~v~~ry~--------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~~~~k~ 135 (254)
T smart00633 64 KTVVGRYK--------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTEEPNAKR 135 (254)
T ss_pred HHHHHHhC--------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCcCccHHH
Confidence 77766653 5788999999953211 12 134579999999999999999999998532110000
Q ss_pred -----C-----cccc-eeecccC--------ChHHHHHHhhhc-CCCCCceeeecccccccccCCCCCCCCChHHHHHHH
Q psy12280 322 -----L-----IEDV-LYAANIL--------YAGEELRKLSYM-QPNKPLMVMEWWTGWFDTWAKNRHNTFPTNEYEMTL 381 (758)
Q Consensus 322 -----~-----~~~v-l~t~nf~--------~~~~~f~~~~~~-~P~~P~~~sEf~~GWf~~WG~~~~~~~~~~~~~~~l 381 (758)
. -.++ ++.++++ +....-+.+++. .-+.|+++||+=..+. +....-++.+...+
T Consensus 136 ~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~~~~g~pi~iTE~dv~~~------~~~~~qA~~~~~~l 209 (254)
T smart00633 136 QAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRFASLGLEIQITELDISGY------PNPQAQAADYEEVF 209 (254)
T ss_pred HHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHHHHcCCceEEEEeecCCC------CcHHHHHHHHHHHH
Confidence 0 0111 3333322 122222223322 2388999999954321 10011123333445
Q ss_pred HHHHhCCceeeeeecccccCCCcCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCchhHHH
Q psy12280 382 QSLLEYPVSLNLFMFHGGTSWGFYNGANIDKSLDKYTPDTTSYDYDAPLTEGGDYTAKYWI 442 (758)
Q Consensus 382 ~~~l~~G~s~N~YMfhGGTNfG~~~Ga~~~~~~~~y~p~~TSYDYdAPi~E~G~~t~Ky~~ 442 (758)
..+++..+-..+.| ||++.|..+ .+ +....+++++|++.|-|..
T Consensus 210 ~~~~~~p~v~gi~~------Wg~~d~~~W-------~~----~~~~~L~d~~~~~kpa~~~ 253 (254)
T smart00633 210 KACLAHPAVTGVTV------WGVTDKYSW-------LD----GGAPLLFDANYQPKPAYWA 253 (254)
T ss_pred HHHHcCCCeeEEEE------eCCccCCcc-------cC----CCCceeECCCCCCChhhhc
Confidence 55555543234444 466655332 11 1345688999999998864
No 15
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=98.35 E-value=5.8e-06 Score=89.06 Aligned_cols=242 Identities=16% Similarity=0.224 Sum_probs=120.3
Q ss_pred CCceEE-ECCEEeEEEEEeecC---CCCChhhHHHHHHHHHHcCCCEEEEecc--cCcC-C-------C----CCCeeee
Q psy12280 123 NPNTFL-LNGKEFRILSGSIHY---FRVRPEYWRDRLRKLRAMGANTVETYIA--WNLH-E-------P----LKDVYEF 184 (758)
Q Consensus 123 ~~~~f~-lnGkp~~i~sG~~Hy---~R~p~e~W~drL~k~Ka~GlNtV~tYv~--Wn~H-E-------P----~~G~fdF 184 (758)
|++.|. -||+||+.++ .-.+ .|...+.|+.-|+..|+.|||+|++=++ |..+ . | .++.+||
T Consensus 1 n~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~ 79 (289)
T PF13204_consen 1 NGRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDF 79 (289)
T ss_dssp TSSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------
T ss_pred CCceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCC
Confidence 357777 8999999998 4444 3567899999999999999999999866 4322 1 1 1123677
Q ss_pred eCCCc--cccHHHHHHHHHHCCceEEecC---CCccccccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhh
Q psy12280 185 GDNNK--DIDFVKFIKIAQEEDLFVIIRP---GPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLE 259 (758)
Q Consensus 185 ~g~~~--~~DL~~Fl~la~e~GL~VIlRp---GPYIcAEw~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~ 259 (758)
+..+. ...+++.|+.|.++||.+-|-| +||+-+-|-+| |. .| . .+..++|.+.|+++++
T Consensus 80 ~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~~------~m-----~---~e~~~~Y~~yv~~Ry~ 143 (289)
T PF13204_consen 80 TRPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--PN------IM-----P---PENAERYGRYVVARYG 143 (289)
T ss_dssp TT----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------TT------SS---------HHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--cc------CC-----C---HHHHHHHHHHHHHHHh
Confidence 75433 6678999999999999976543 34443444433 11 11 0 4678889999999998
Q ss_pred ccccccCCCCEEEeccccccccCCCCcchHHHHHHHHHHHHhcCCCcceEEcCCCC-----CCCCCCCcc-cceeecccC
Q psy12280 260 PLQFIDGQGPIIMLGVENELAVLGPNVADKNYMRELVAMLRSNGIRSPLFTADDPS-----MGDSGSLIE-DVLYAANIL 333 (758)
Q Consensus 260 ~~~~~nG~GpIImvQIENEyg~~~~y~~d~~Y~~~L~~~~~~~G~~vpl~T~dg~~-----~~~~G~~~~-~vl~t~nf~ 333 (758)
.+ .+|| |-|.||+.. ...+.++.+.+.+.+++.+...+......+. .+....-++ ..+++..-.
T Consensus 144 ~~------~Nvi-W~l~gd~~~---~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh~~ 213 (289)
T PF13204_consen 144 AY------PNVI-WILGGDYFD---TEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGHNR 213 (289)
T ss_dssp T-------SSEE-EEEESSS-----TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S--
T ss_pred cC------CCCE-EEecCccCC---CCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCCCc
Confidence 76 4665 889999921 2467788888989998876544442222211 111000000 011111111
Q ss_pred ChHHHHHHh-----hhcCCCCCceeeec-ccccccccCCCCCCCCChHHHHHHH-HHHHhCC-ceee
Q psy12280 334 YAGEELRKL-----SYMQPNKPLMVMEW-WTGWFDTWAKNRHNTFPTNEYEMTL-QSLLEYP-VSLN 392 (758)
Q Consensus 334 ~~~~~f~~~-----~~~~P~~P~~~sEf-~~GWf~~WG~~~~~~~~~~~~~~~l-~~~l~~G-~s~N 392 (758)
........+ -+..|.+|.+..|- |-|-...+.. .....+++++...+ ..+|+.| +.+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~-~~~~~~~~dvrr~aw~svlaGa~aG~t 279 (289)
T PF13204_consen 214 YDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWG-YNGRFSAEDVRRRAWWSVLAGAYAGHT 279 (289)
T ss_dssp TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS--TS-B--HHHHHHHHHHHHHCT--SEEE
T ss_pred ccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCc-ccCCCCHHHHHHHHHHHHhcCCCcccc
Confidence 111112111 24579999999995 4454333322 23457888888766 4566655 3444
No 16
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.26 E-value=4.1e-06 Score=78.04 Aligned_cols=78 Identities=23% Similarity=0.247 Sum_probs=57.9
Q ss_pred cccccccccCCCCCccceEEEeecccccCCCCC-ce-eEeccccceEEEEEECCccccCCcCCcCCcceeEEEEc---cc
Q psy12280 500 IPMEDLAVNNGTGQSFGYTLYRQPDWHIPTDQD-AI-MRIEGRVADIAIVMVNQERQTVPLSDVQDLNEFGFWKT---EN 574 (758)
Q Consensus 500 ~~mE~l~~n~~~gQ~~GyvlYrt~~~~i~~~~~-~~-L~i~~~~~D~a~Vfvng~~~~~~~~~~~~~~~vG~l~~---~~ 574 (758)
+.|-+. |.+.|++|||++ |..+..+. .. |.+.++.+.+++|||||+ ++|+... ..
T Consensus 25 l~~~~~------g~~~g~~~Yrg~-F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~-------------~~G~~~~~~g~q 84 (111)
T PF13364_consen 25 LYASDY------GFHAGYLWYRGT-FTGTGQDTSLTPLNIQGGNAFRASVWVNGW-------------FLGSYWPGIGPQ 84 (111)
T ss_dssp TCCGCG------TSSSCEEEEEEE-EETTTEEEEEE-EEECSSTTEEEEEEETTE-------------EEEEEETTTECC
T ss_pred eccCcc------ccCCCCEEEEEE-EeCCCcceeEEEEeccCCCceEEEEEECCE-------------EeeeecCCCCcc
Confidence 566777 889999999999 75332222 34 556678999999999999 9999883 34
Q ss_pred eeEEEecC---CCCcEEEEEEeccCC
Q psy12280 575 AELLLNIT---RPANNIDILVENTGR 597 (758)
Q Consensus 575 ~~~~l~~~---~~~~~L~ILVEN~GR 597 (758)
.+|.+|.. .++++|.+|+++||+
T Consensus 85 ~tf~~p~~il~~~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 85 TTFSVPAGILKYGNNVLVVLWDNMGH 110 (111)
T ss_dssp EEEEE-BTTBTTCEEEEEEEEE-STT
T ss_pred EEEEeCceeecCCCEEEEEEEeCCCC
Confidence 56777762 346788999999997
No 17
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.00 E-value=0.00013 Score=79.15 Aligned_cols=174 Identities=15% Similarity=0.206 Sum_probs=121.3
Q ss_pred HHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcccccCCCceec
Q psy12280 158 LRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLR 237 (758)
Q Consensus 158 ~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~~R 237 (758)
.|+.+.=|-+.=.=|+..+|++|.|+|+.. ++..+.|+++||.+--. +.| |-+ -.|.|+..+.
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe~A------D~ia~FAr~h~m~lhGH--tLv---W~~-q~P~W~~~~e----- 117 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFEAA------DAIANFARKHNMPLHGH--TLV---WHS-QVPDWLFGDE----- 117 (345)
T ss_pred HhhhcccccccccccccccCCCCccCccch------HHHHHHHHHcCCeeccc--eee---ecc-cCCchhhccc-----
Confidence 444443344444559999999999999986 88999999999965422 233 443 6799998743
Q ss_pred cCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCC-------CC--cchHHHHHHHHHHHHhcCCCcce
Q psy12280 238 SMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLG-------PN--VADKNYMRELVAMLRSNGIRSPL 308 (758)
Q Consensus 238 t~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~-------~y--~~d~~Y~~~L~~~~~~~G~~vpl 308 (758)
-+-+..++.+++|+..++.+.+ |-|+.|-|=||-=..+ .| ....+|+++.-+.+|+++.+..|
T Consensus 118 ~~~~~~~~~~e~hI~tV~~rYk--------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL 189 (345)
T COG3693 118 LSKEALAKMVEEHIKTVVGRYK--------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKL 189 (345)
T ss_pred cChHHHHHHHHHHHHHHHHhcc--------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceE
Confidence 2557789999999999998874 5789999999973311 12 35678999999999999999999
Q ss_pred EEcCCCC-C---------------CCCCCCcccceeeccc----CChHHHHHHhhhc-CCCCCceeeec
Q psy12280 309 FTADDPS-M---------------GDSGSLIEDVLYAANI----LYAGEELRKLSYM-QPNKPLMVMEW 356 (758)
Q Consensus 309 ~T~dg~~-~---------------~~~G~~~~~vl~t~nf----~~~~~~f~~~~~~-~P~~P~~~sEf 356 (758)
|.+|-.. . ...|.+++|+=--+.| -+.+..+..+.+. .-+-|+++||+
T Consensus 190 ~~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~~~~~~~~~~a~~~~~k~Gl~i~VTEL 258 (345)
T COG3693 190 VINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKMRAALLKFSKLGLPIYVTEL 258 (345)
T ss_pred EeecccccCChHHHHHHHHHHHHHHHCCCCccceeeeeeecCCCCCHHHHHHHHHHHhhcCCCceEEEe
Confidence 9999731 1 1334434442222222 2355555555443 23789999997
No 18
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.70 E-value=0.00039 Score=75.98 Aligned_cols=265 Identities=17% Similarity=0.209 Sum_probs=164.3
Q ss_pred EEEEeecCCCCChhhHHHHHHHHHHcCCCEEEEe--cccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCC
Q psy12280 136 ILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETY--IAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGP 213 (758)
Q Consensus 136 i~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tY--v~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGP 213 (758)
.+|.+++..++..+. +.+.+-..-||.|..- .-|...||.+|+|+|+. .+++++.|+++||.|--.+
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~~------~D~~~~~a~~~g~~vrGH~-- 79 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFES------ADAILDWARENGIKVRGHT-- 79 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-HH------HHHHHHHHHHTT-EEEEEE--
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCccc------hhHHHHHHHhcCcceeeee--
Confidence 689999998877653 4444555679998876 55999999999999975 6999999999999987442
Q ss_pred ccccccCCCCCCcccccCCCceeccCC----HhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCCC-----
Q psy12280 214 YICAEWDFGGMPSYLLREPGIKLRSMD----PKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGP----- 284 (758)
Q Consensus 214 YIcAEw~~GGlP~WL~~~p~i~~Rt~d----p~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~~----- 284 (758)
==|.. ..|.|+...+. .+ +...+.++++++.++.+++.. |.|..|-|=||-=....
T Consensus 80 ---LvW~~-~~P~w~~~~~~-----~~~~~~~~~~~~l~~~I~~v~~~y~~~------g~i~~WDVvNE~i~~~~~~~~~ 144 (320)
T PF00331_consen 80 ---LVWHS-QTPDWVFNLAN-----GSPDEKEELRARLENHIKTVVTRYKDK------GRIYAWDVVNEAIDDDGNPGGL 144 (320)
T ss_dssp ---EEESS-SS-HHHHTSTT-----SSBHHHHHHHHHHHHHHHHHHHHTTTT------TTESEEEEEES-B-TTSSSSSB
T ss_pred ---EEEcc-cccceeeeccC-----CCcccHHHHHHHHHHHHHHHHhHhccc------cceEEEEEeeecccCCCccccc
Confidence 12544 78999987511 12 237888888888888877533 58999999999633111
Q ss_pred -----C-cchHHHHHHHHHHHHhcCCCcceEEcCCCCCCCCCC--C--------cccc-eeecccCC-------hHHHHH
Q psy12280 285 -----N-VADKNYMRELVAMLRSNGIRSPLFTADDPSMGDSGS--L--------IEDV-LYAANILY-------AGEELR 340 (758)
Q Consensus 285 -----y-~~d~~Y~~~L~~~~~~~G~~vpl~T~dg~~~~~~G~--~--------~~~v-l~t~nf~~-------~~~~f~ 340 (758)
+ ..+.+|+...-+.++++..++.||.||......... . -.|+ ++.++++. .+..-+
T Consensus 145 r~~~~~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy~~~~~~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~~~~i~~ 224 (320)
T PF00331_consen 145 RDSPWYDALGPDYIADAFRAAREADPNAKLFYNDYNIESPAKRDAYLNLVKDLKARGVPIDGIGLQSHFDAGYPPEQIWN 224 (320)
T ss_dssp CTSHHHHHHTTCHHHHHHHHHHHHHTTSEEEEEESSTTSTHHHHHHHHHHHHHHHTTHCS-EEEEEEEEETTSSHHHHHH
T ss_pred cCChhhhcccHhHHHHHHHHHHHhCCCcEEEeccccccchHHHHHHHHHHHHHHhCCCccceechhhccCCCCCHHHHHH
Confidence 1 234679999999999999999999999753211000 0 0122 34444332 233333
Q ss_pred Hhhhc-CCCCCceeeecccccccccCCCCCC------CCChHHHHHHHHHHHhCC--ceeeeeecccccCCCcCCCCCCC
Q psy12280 341 KLSYM-QPNKPLMVMEWWTGWFDTWAKNRHN------TFPTNEYEMTLQSLLEYP--VSLNLFMFHGGTSWGFYNGANID 411 (758)
Q Consensus 341 ~~~~~-~P~~P~~~sEf~~GWf~~WG~~~~~------~~~~~~~~~~l~~~l~~G--~s~N~YMfhGGTNfG~~~Ga~~~ 411 (758)
.++++ .-+.|+..||+ |-... ... ..-++.+...++.+++.. .-. |=|=||++.+..+
T Consensus 225 ~l~~~~~~Gl~i~ITEl-----Dv~~~-~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~------git~Wg~~D~~sW- 291 (320)
T PF00331_consen 225 ALDRFASLGLPIHITEL-----DVRDD-DNPPDAEEEEAQAEYYRDFLTACFSHPPAAVE------GITWWGFTDGYSW- 291 (320)
T ss_dssp HHHHHHTTTSEEEEEEE-----EEESS-STTSCHHHHHHHHHHHHHHHHHHHHTTHCTEE------EEEESSSBTTGST-
T ss_pred HHHHHHHcCCceEEEee-----eecCC-CCCcchHHHHHHHHHHHHHHHHHHhCCccCCC------EEEEECCCCCCcc-
Confidence 34333 34689999998 32222 111 011333444456667777 222 2234788776542
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCCchhHHHHHHH
Q psy12280 412 KSLDKYTPDTTSYDYDAPLTEGGDYTAKYWITRKY 446 (758)
Q Consensus 412 ~~~~~y~p~~TSYDYdAPi~E~G~~t~Ky~~lR~l 446 (758)
.+... .++..|.++++++.|-|.++++.
T Consensus 292 ------~~~~~-~~~~~lfd~~~~~Kpa~~~~~~a 319 (320)
T PF00331_consen 292 ------RPDTP-PDRPLLFDEDYQPKPAYDAIVDA 319 (320)
T ss_dssp ------TGGHS-EG--SSB-TTSBB-HHHHHHHHH
T ss_pred ------cCCCC-CCCCeeECCCcCCCHHHHHHHhc
Confidence 11211 67788999999999999999874
No 19
>TIGR03356 BGL beta-galactosidase.
Probab=97.65 E-value=5.9e-05 Score=85.52 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEecccCcCCCC-CCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcc
Q psy12280 149 EYWRDRLRKLRAMGANTVETYIAWNLHEPL-KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSY 227 (758)
Q Consensus 149 e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~-~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~W 227 (758)
..|+++|++||++|+|++|+-|.|...+|. +|++|.++. .=.+.+|+.|.++||.+|+--= .-.+|.|
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~---~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~ 122 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGL---DFYDRLVDELLEAGIEPFVTLY--------HWDLPQA 122 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHH---HHHHHHHHHHHHcCCeeEEeec--------cCCccHH
Confidence 458899999999999999999999999999 788888776 6678999999999999886541 1348999
Q ss_pred cccCCCceeccCCHhHHHHHHHHHHHHHHHhhc
Q psy12280 228 LLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEP 260 (758)
Q Consensus 228 L~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~ 260 (758)
|.++.+- .++...++..+|.+.++.+++.
T Consensus 123 l~~~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 123 LEDRGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred HHhcCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 9865443 3466667777777777776664
No 20
>PLN02801 beta-amylase
Probab=97.59 E-value=0.00041 Score=79.12 Aligned_cols=118 Identities=19% Similarity=0.387 Sum_probs=81.8
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecccCcCCC-CCCeeeeeCCCccccHHHHHHHHHHCCceE--EecCCCccccccCCC-
Q psy12280 147 RPEYWRDRLRKLRAMGANTVETYIAWNLHEP-LKDVYEFGDNNKDIDFVKFIKIAQEEDLFV--IIRPGPYICAEWDFG- 222 (758)
Q Consensus 147 p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP-~~G~fdF~g~~~~~DL~~Fl~la~e~GL~V--IlRpGPYIcAEw~~G- 222 (758)
.++.-+..|+++|++|+..|.+-|.|...|. .|++|||+|- .++.++|+++||++ |+.. .-|+- +-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY------~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD 105 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAY------RSLFELVQSFGLKIQAIMSF--HQCGG-NVGD 105 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHH------HHHHHHHHHcCCeEEEEEEe--cccCC-CCCC
Confidence 3677899999999999999999999999997 5999999995 88999999999995 4554 33433 112
Q ss_pred ----CCCccccc----CCCceec--c--CCHhH----------------HHHHHHHHHHHHHHhhccccccCCCCEEEec
Q psy12280 223 ----GMPSYLLR----EPGIKLR--S--MDPKY----------------LNRVRQYFNNLIPLLEPLQFIDGQGPIIMLG 274 (758)
Q Consensus 223 ----GlP~WL~~----~p~i~~R--t--~dp~y----------------~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQ 274 (758)
-||.|+.+ +|+|... + .++.| ++.-..|++.....++++. .+ +-|.-+|
T Consensus 106 ~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l--~~-~~I~eI~ 182 (517)
T PLN02801 106 AVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL--EA-GVIIDIE 182 (517)
T ss_pred cccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc--cC-CeeEEEE
Confidence 28999985 3666421 1 11111 2333444445555555554 22 5777787
Q ss_pred cc
Q psy12280 275 VE 276 (758)
Q Consensus 275 IE 276 (758)
|.
T Consensus 183 VG 184 (517)
T PLN02801 183 VG 184 (517)
T ss_pred Ec
Confidence 74
No 21
>PLN02905 beta-amylase
Probab=97.54 E-value=0.00047 Score=79.95 Aligned_cols=80 Identities=19% Similarity=0.404 Sum_probs=64.6
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecccCcCCC-CCCeeeeeCCCccccHHHHHHHHHHCCceEE--ecCCCccccccCCC-
Q psy12280 147 RPEYWRDRLRKLRAMGANTVETYIAWNLHEP-LKDVYEFGDNNKDIDFVKFIKIAQEEDLFVI--IRPGPYICAEWDFG- 222 (758)
Q Consensus 147 p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP-~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VI--lRpGPYIcAEw~~G- 222 (758)
.++.-+..|+++|++|+..|.+=|.|...|. .|++|||+|- .++.++|+++||++. +.. .-|+- +-|
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY------~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD 354 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGY------KRLFQMVRELKLKLQVVMSF--HECGG-NVGD 354 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHH------HHHHHHHHHcCCeEEEEEEe--cccCC-CCCC
Confidence 3667889999999999999999999999998 7999999994 889999999999954 554 33543 212
Q ss_pred ----CCCccccc----CCCce
Q psy12280 223 ----GMPSYLLR----EPGIK 235 (758)
Q Consensus 223 ----GlP~WL~~----~p~i~ 235 (758)
-||.|+.. +|+|.
T Consensus 355 ~~~IPLP~WV~e~g~~nPDif 375 (702)
T PLN02905 355 DVCIPLPHWVAEIGRSNPDIF 375 (702)
T ss_pred cccccCCHHHHHhhhcCCCce
Confidence 28999986 36664
No 22
>PLN02161 beta-amylase
Probab=97.51 E-value=0.00022 Score=81.21 Aligned_cols=116 Identities=15% Similarity=0.262 Sum_probs=81.4
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCC-CCCeeeeeCCCccccHHHHHHHHHHCCceEE--ecCCCccccccCCC--
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEP-LKDVYEFGDNNKDIDFVKFIKIAQEEDLFVI--IRPGPYICAEWDFG-- 222 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP-~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VI--lRpGPYIcAEw~~G-- 222 (758)
++.-+..|+++|++|+..|.+=|.|...|. .|++|||+|- .++.++++++||++. +.. .-|+- +-|
T Consensus 116 ~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY------~~l~~mvr~~GLKlq~vmSF--HqCGG-NvGd~ 186 (531)
T PLN02161 116 LKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLY------EELFRLISEAGLKLHVALCF--HSNMH-LFGGK 186 (531)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHH------HHHHHHHHHcCCeEEEEEEe--cccCC-CCCCc
Confidence 566788999999999999999999999998 7999999994 889999999999954 543 33433 112
Q ss_pred ---CCCccccc----CCCceecc----CCHhH----------------HHHHHHHHHHHHHHhhccccccCCCCEEEecc
Q psy12280 223 ---GMPSYLLR----EPGIKLRS----MDPKY----------------LNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGV 275 (758)
Q Consensus 223 ---GlP~WL~~----~p~i~~Rt----~dp~y----------------~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQI 275 (758)
-||.|+.+ +|+|.... .++.| ++.-..|++.....++++. + +-|.-+||
T Consensus 187 ~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~---~-~~I~eI~V 262 (531)
T PLN02161 187 GGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYI---G-NVIEEISI 262 (531)
T ss_pred cCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHh---c-CceEEEEe
Confidence 28999985 36764321 11111 2333444555555566654 3 57777777
Q ss_pred c
Q psy12280 276 E 276 (758)
Q Consensus 276 E 276 (758)
.
T Consensus 263 G 263 (531)
T PLN02161 263 G 263 (531)
T ss_pred c
Confidence 3
No 23
>PLN02705 beta-amylase
Probab=97.45 E-value=0.00031 Score=81.20 Aligned_cols=118 Identities=14% Similarity=0.230 Sum_probs=83.0
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecccCcCCC-CCCeeeeeCCCccccHHHHHHHHHHCCceE--EecCCCccccccCCC-
Q psy12280 147 RPEYWRDRLRKLRAMGANTVETYIAWNLHEP-LKDVYEFGDNNKDIDFVKFIKIAQEEDLFV--IIRPGPYICAEWDFG- 222 (758)
Q Consensus 147 p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP-~~G~fdF~g~~~~~DL~~Fl~la~e~GL~V--IlRpGPYIcAEw~~G- 222 (758)
.++.-+..|+++|++|+..|.+=|.|...|. .|++|||+|- .++.++|+++||++ |+.. .-|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY------~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD 336 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGY------RELFNIIREFKLKLQVVMAF--HEYGG-NASG 336 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHH------HHHHHHHHHcCCeEEEEEEe--eccCC-CCCC
Confidence 4788899999999999999999999999998 6999999994 88999999999994 4554 33544 222
Q ss_pred ----CCCccccc----CCCceecc--------------CC-H-----hHHHHHHHHHHHHHHHhhccccccCCCCEEEec
Q psy12280 223 ----GMPSYLLR----EPGIKLRS--------------MD-P-----KYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLG 274 (758)
Q Consensus 223 ----GlP~WL~~----~p~i~~Rt--------------~d-p-----~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQ 274 (758)
-||.|+.. +|+|.... ++ | .-++.-..|++..-..+++++ .+ |-|.-||
T Consensus 337 ~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl--~~-g~I~eI~ 413 (681)
T PLN02705 337 NVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLF--VE-GLITAVE 413 (681)
T ss_pred cccccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhc--cC-CceeEEE
Confidence 28999985 36664311 01 1 112344444555555566654 22 5788888
Q ss_pred cc
Q psy12280 275 VE 276 (758)
Q Consensus 275 IE 276 (758)
|.
T Consensus 414 VG 415 (681)
T PLN02705 414 IG 415 (681)
T ss_pred ec
Confidence 74
No 24
>PLN00197 beta-amylase; Provisional
Probab=97.35 E-value=0.00052 Score=78.82 Aligned_cols=80 Identities=21% Similarity=0.486 Sum_probs=64.9
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecccCcCCC-CCCeeeeeCCCccccHHHHHHHHHHCCceEE--ecCCCccccccCCC-
Q psy12280 147 RPEYWRDRLRKLRAMGANTVETYIAWNLHEP-LKDVYEFGDNNKDIDFVKFIKIAQEEDLFVI--IRPGPYICAEWDFG- 222 (758)
Q Consensus 147 p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP-~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VI--lRpGPYIcAEw~~G- 222 (758)
.++.-+..|+++|++|+..|.+=|.|...|. .|++|||+|- .++.++|+++||++. +.. .-|+- +-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY------~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD 195 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGY------NELLEMAKRHGLKVQAVMSF--HQCGG-NVGD 195 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHH------HHHHHHHHHcCCeEEEEEEe--cccCC-CCCC
Confidence 3677899999999999999999999999998 7999999995 889999999999954 544 33543 222
Q ss_pred ----CCCccccc----CCCce
Q psy12280 223 ----GMPSYLLR----EPGIK 235 (758)
Q Consensus 223 ----GlP~WL~~----~p~i~ 235 (758)
-||.|+.. +|+|.
T Consensus 196 ~~~IpLP~WV~~~g~~dpDif 216 (573)
T PLN00197 196 SCTIPLPKWVVEEVDKDPDLA 216 (573)
T ss_pred cccccCCHHHHHhhccCCCce
Confidence 28999986 36664
No 25
>PLN02803 beta-amylase
Probab=97.31 E-value=0.00063 Score=77.96 Aligned_cols=116 Identities=21% Similarity=0.402 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCC-CCCeeeeeCCCccccHHHHHHHHHHCCceEE--ecCCCccccccCCC--
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEP-LKDVYEFGDNNKDIDFVKFIKIAQEEDLFVI--IRPGPYICAEWDFG-- 222 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP-~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VI--lRpGPYIcAEw~~G-- 222 (758)
++.-+..|+++|++|+..|.+=|.|...|. .|++|||+|- .++.++|+++||++. +.. .-|+- +-|
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY------~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~ 176 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGY------AELVQMVQKHGLKLQVVMSF--HQCGG-NVGDS 176 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHH------HHHHHHHHHcCCeEEEEEEe--cccCC-CCCCc
Confidence 577889999999999999999999999998 5999999995 889999999999954 543 33433 112
Q ss_pred ---CCCccccc----CCCceecc----CCHhH----------------HHHHHHHHHHHHHHhhccccccCCCCEEEecc
Q psy12280 223 ---GMPSYLLR----EPGIKLRS----MDPKY----------------LNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGV 275 (758)
Q Consensus 223 ---GlP~WL~~----~p~i~~Rt----~dp~y----------------~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQI 275 (758)
-||.|+.. +|+|.... .+..| ++.-..|++.....+++++ | +-|.-+||
T Consensus 177 ~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l---~-~~I~eI~V 252 (548)
T PLN02803 177 CSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYL---G-GVIAEIQV 252 (548)
T ss_pred ccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHh---c-CceEEEEe
Confidence 28999985 36664311 11111 2333444555555566654 3 67888887
Q ss_pred c
Q psy12280 276 E 276 (758)
Q Consensus 276 E 276 (758)
.
T Consensus 253 G 253 (548)
T PLN02803 253 G 253 (548)
T ss_pred c
Confidence 4
No 26
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.96 E-value=0.00072 Score=75.70 Aligned_cols=115 Identities=16% Similarity=0.214 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHcCCCEEEEecccCcCCCC-CCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccc----cCCCCC
Q psy12280 150 YWRDRLRKLRAMGANTVETYIAWNLHEPL-KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAE----WDFGGM 224 (758)
Q Consensus 150 ~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~-~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAE----w~~GGl 224 (758)
.-+..|+++|++|+..|.+.|.|...|.. |++|||++- +++.++|++.||++.+-.-=.-|+- .-+=-|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y------~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpL 90 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGY------RELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPL 90 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHH------HHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHH------HHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcC
Confidence 56789999999999999999999999997 999999994 8999999999999654221133421 111137
Q ss_pred CcccccC---CCcee--cc------------CCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccc
Q psy12280 225 PSYLLRE---PGIKL--RS------------MDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVE 276 (758)
Q Consensus 225 P~WL~~~---p~i~~--Rt------------~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIE 276 (758)
|.|+... .+|.. |+ .... ++.-..+++.+...++.+. +-|..+||.
T Consensus 91 P~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~~~~-----~~I~~I~vg 153 (402)
T PF01373_consen 91 PSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFSDYL-----STITEIQVG 153 (402)
T ss_dssp -HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCHHHH-----TGEEEEEE-
T ss_pred CHHHHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHHHHH-----hhheEEEec
Confidence 9999742 24421 11 1112 4555555566666666654 367777763
No 27
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.92 E-value=0.019 Score=63.44 Aligned_cols=131 Identities=20% Similarity=0.282 Sum_probs=72.7
Q ss_pred HHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHH---HHHHHHHCCceEEecCCCccccccCCCCC----
Q psy12280 152 RDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVK---FIKIAQEEDLFVIIRPGPYICAEWDFGGM---- 224 (758)
Q Consensus 152 ~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~---Fl~la~e~GL~VIlRpGPYIcAEw~~GGl---- 224 (758)
+|.++.||+.|+|+||.=| | ++|.. .|. .|++. ..+-|+++||.|+|-.- | .+=|..-|-
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~-----~g~---~~~~~~~~~akrak~~Gm~vlldfH-Y-SD~WaDPg~Q~~P 93 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYD-----GGY---NDLEDVIALAKRAKAAGMKVLLDFH-Y-SDFWADPGKQNKP 93 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TT-----TTT---TSHHHHHHHHHHHHHTT-EEEEEE--S-SSS--BTTB-B--
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcc-----ccc---CCHHHHHHHHHHHHHCCCeEEEeec-c-cCCCCCCCCCCCC
Confidence 5799999999999999866 4 45554 444 45555 45556778999998862 1 122222110
Q ss_pred CcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEecccccccc--CCCCcc------hHHHHHHHH
Q psy12280 225 PSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAV--LGPNVA------DKNYMRELV 296 (758)
Q Consensus 225 P~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~--~~~y~~------d~~Y~~~L~ 296 (758)
-+|.. .+-..-.++|..|.+.++..|+.. | -.+=||||.||... +...+. -..++..-.
T Consensus 94 ~aW~~--------~~~~~l~~~v~~yT~~vl~~l~~~----G-~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~ 160 (332)
T PF07745_consen 94 AAWAN--------LSFDQLAKAVYDYTKDVLQALKAA----G-VTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGI 160 (332)
T ss_dssp TTCTS--------SSHHHHHHHHHHHHHHHHHHHHHT----T---ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHH
T ss_pred ccCCC--------CCHHHHHHHHHHHHHHHHHHHHHC----C-CCccEEEeCccccccccCcCCCccCHHHHHHHHHHHH
Confidence 11211 133455688899999999998754 4 45559999999853 111111 123444445
Q ss_pred HHHHhcCCCcce
Q psy12280 297 AMLRSNGIRSPL 308 (758)
Q Consensus 297 ~~~~~~G~~vpl 308 (758)
+.+|+.+.+..+
T Consensus 161 ~AVr~~~p~~kV 172 (332)
T PF07745_consen 161 KAVREVDPNIKV 172 (332)
T ss_dssp HHHHTHSSTSEE
T ss_pred HHHHhcCCCCcE
Confidence 667776555444
No 28
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.89 E-value=0.016 Score=58.07 Aligned_cols=137 Identities=15% Similarity=0.125 Sum_probs=85.8
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEecccCcCC-----CCC---CeeeeeCCCccccHHHHHHHHHHCCceEEecCCCcc
Q psy12280 144 FRVRPEYWRDRLRKLRAMGANTVETYIAWNLHE-----PLK---DVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYI 215 (758)
Q Consensus 144 ~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HE-----P~~---G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYI 215 (758)
-.+.++.|+.+++.||++|+++|=.= |.... |.. +.|.-.. .--|+.+|++|++.||.|++..+ -
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~---~d~l~~~L~~A~~~Gmkv~~Gl~--~ 87 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPP---VDLLEMILDAADKYGMKVFVGLY--F 87 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCc---ccHHHHHHHHHHHcCCEEEEeCC--C
Confidence 58999999999999999999998431 32221 111 1111111 13578899999999999998763 1
Q ss_pred ccccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCCCC-cchHHHHHH
Q psy12280 216 CAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPN-VADKNYMRE 294 (758)
Q Consensus 216 cAEw~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~~y-~~d~~Y~~~ 294 (758)
+ |.|-.+ .++.. -..+-++|+..+..+.. ++ .+.=+|=|-.|... + -...+..+.
T Consensus 88 ~--------~~~w~~--------~~~~~---~~~~~~~v~~el~~~yg-~h-~sf~GWYip~E~~~---~~~~~~~~~~~ 143 (166)
T PF14488_consen 88 D--------PDYWDQ--------GDLDW---EAERNKQVADELWQRYG-HH-PSFYGWYIPYEIDD---YNWNAPERFAL 143 (166)
T ss_pred C--------chhhhc--------cCHHH---HHHHHHHHHHHHHHHHc-CC-CCCceEEEecccCC---cccchHHHHHH
Confidence 1 223221 22222 11222336666666443 45 78889999999976 3 235667788
Q ss_pred HHHHHHhcCCCcceEEc
Q psy12280 295 LVAMLRSNGIRSPLFTA 311 (758)
Q Consensus 295 L~~~~~~~G~~vpl~T~ 311 (758)
|.+.+++.-.+.|+..|
T Consensus 144 l~~~lk~~s~~~Pv~IS 160 (166)
T PF14488_consen 144 LGKYLKQISPGKPVMIS 160 (166)
T ss_pred HHHHHHHhCCCCCeEEe
Confidence 88888876445566543
No 29
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.88 E-value=0.0026 Score=62.05 Aligned_cols=91 Identities=22% Similarity=0.244 Sum_probs=61.1
Q ss_pred CCccceEEEeecccccCCC---CCceeEeccccceEEEEEECCccccCCcCCcCCcceeEEEEccceeEEEec----CCC
Q psy12280 512 GQSFGYTLYRQPDWHIPTD---QDAIMRIEGRVADIAIVMVNQERQTVPLSDVQDLNEFGFWKTENAELLLNI----TRP 584 (758)
Q Consensus 512 gQ~~GyvlYrt~~~~i~~~---~~~~L~i~~~~~D~a~Vfvng~~~~~~~~~~~~~~~vG~l~~~~~~~~l~~----~~~ 584 (758)
....|..+||++ |.++.. ....|.+ +++.+.|.|||||+ ++|........+.+.. ..+
T Consensus 64 ~~~~~~~wYr~~-f~lp~~~~~~~~~L~f-~gv~~~a~v~vNG~-------------~vg~~~~~~~~~~~dIt~~l~~g 128 (167)
T PF02837_consen 64 WDYSGYAWYRRT-FTLPADWKGKRVFLRF-EGVDYAAEVYVNGK-------------LVGSHEGGYTPFEFDITDYLKPG 128 (167)
T ss_dssp STCCSEEEEEEE-EEESGGGTTSEEEEEE-SEEESEEEEEETTE-------------EEEEEESTTS-EEEECGGGSSSE
T ss_pred cccCceEEEEEE-EEeCchhcCceEEEEe-ccceEeeEEEeCCe-------------EEeeeCCCcCCeEEeChhhccCC
Confidence 445899999998 888763 2366776 89999999999999 9999877544444443 245
Q ss_pred C-cEEEEEEeccCCCcc-ccCcccccccccccccccCCceEEe
Q psy12280 585 A-NNIDILVENTGRVNY-WLNDDFKYSNIKKGLGTSFDNVVTV 625 (758)
Q Consensus 585 ~-~~L~ILVEN~GRvNy-~~~~~~~~~~~~KGI~~g~~~~V~L 625 (758)
. |+|.|.|.+...-.+ .-.+ ++ ...|| .. + |.|
T Consensus 129 ~~N~l~V~v~~~~~~~~~~~~~--~~--~~~GI-~r--~-V~L 163 (167)
T PF02837_consen 129 EENTLAVRVDNWPDGSTIPGFD--YF--NYAGI-WR--P-VWL 163 (167)
T ss_dssp EEEEEEEEEESSSGGGCGBSSS--EE--E--EE-ES--E-EEE
T ss_pred CCEEEEEEEeecCCCceeecCc--CC--ccCcc-cc--E-EEE
Confidence 5 899999996554332 1011 11 16899 55 6 776
No 30
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.55 E-value=0.0022 Score=73.37 Aligned_cols=97 Identities=12% Similarity=0.170 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEecccCcCCCC--CCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCc
Q psy12280 149 EYWRDRLRKLRAMGANTVETYIAWNLHEPL--KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPS 226 (758)
Q Consensus 149 e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~--~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~ 226 (758)
..|+++|+.||++|+|+.|.-|.|...+|. +|++|-.|. .-.+.+|+.+.++||..|+-- -.-.+|.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~---~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~ 126 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGL---DFYRDLIDELLENGIEPIVTL--------YHFDLPL 126 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHH---HHHHHHHHHHHHTT-EEEEEE--------ESS--BH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHh---hhhHHHHHHHHhhccceeeee--------eeccccc
Confidence 569999999999999999999999999999 699998886 667889999999999977653 2345899
Q ss_pred ccccCCCceeccCCHhHHHHHHHHHHHHHHHhhc
Q psy12280 227 YLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEP 260 (758)
Q Consensus 227 WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~ 260 (758)
||.+.-+- .++...+...+|.+.+++++..
T Consensus 127 ~l~~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 127 WLEDYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHHHHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ceeecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 99863222 2455666667776677777655
No 31
>KOG2230|consensus
Probab=96.52 E-value=0.019 Score=66.18 Aligned_cols=148 Identities=16% Similarity=0.169 Sum_probs=99.1
Q ss_pred ceEEECCEEeEEEEEeecC-----CCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHH
Q psy12280 125 NTFLLNGKEFRILSGSIHY-----FRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKI 199 (758)
Q Consensus 125 ~~f~lnGkp~~i~sG~~Hy-----~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~l 199 (758)
-.|.+||.|+++.++..-+ .|..-+.-+..|+-++++|+|++|+ |.- |. ..-++|.++
T Consensus 328 fyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----Gv---------YEsd~FY~l 390 (867)
T KOG2230|consen 328 FYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----GV---------YESDYFYQL 390 (867)
T ss_pred eEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----cc---------ccchhHHHH
Confidence 4689999999999998765 3344556677899999999999999 432 22 233799999
Q ss_pred HHHCCceEEecCCCccccccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEecccccc
Q psy12280 200 AQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENEL 279 (758)
Q Consensus 200 a~e~GL~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEy 279 (758)
|.+.||.|--.. =+.||-.. .+..|++.|+.=.+.=+.+|+ ++ +.||.+.=.||=
T Consensus 391 ad~lGilVWQD~-MFACAlYP------------------t~~eFl~sv~eEV~yn~~Rls-----~H-pSviIfsgNNEN 445 (867)
T KOG2230|consen 391 ADSLGILVWQDM-MFACALYP------------------TNDEFLSSVREEVRYNAMRLS-----HH-PSVIIFSGNNEN 445 (867)
T ss_pred hhhccceehhhh-HHHhhccc------------------CcHHHHHHHHHHHHHHHHhhc-----cC-CeEEEEeCCCcc
Confidence 999999885221 13454443 577899888874444444443 45 899999877763
Q ss_pred cc--C-CCC----cch----H----HHHHHHHHHHHhcCCCcceEEcCCC
Q psy12280 280 AV--L-GPN----VAD----K----NYMRELVAMLRSNGIRSPLFTADDP 314 (758)
Q Consensus 280 g~--~-~~y----~~d----~----~Y~~~L~~~~~~~G~~vpl~T~dg~ 314 (758)
-. . ++| ..+ + -|.+-++++......++|+.++-..
T Consensus 446 EaAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSPs 495 (867)
T KOG2230|consen 446 EAALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSPS 495 (867)
T ss_pred HHHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCCC
Confidence 21 0 012 111 2 2455677777777788898877553
No 32
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.31 E-value=0.01 Score=57.99 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=51.7
Q ss_pred CCceEEEEEEeccCCCCCcceeeecCCc-eEEEEEECCeeceeeeccCCceEEEeCccccCCCC-cEEEEEEe
Q psy12280 662 PSPTLFQAILTITTLDDLRDTYLDMQDW-TRGVVFVNGFNLGRYSRLSPYQTLYLPAPLLHLGQ-NKISVFEH 732 (758)
Q Consensus 662 ~~p~fyr~tF~l~~~~~~~DTfLdm~gw-gKG~v~VNG~nLGRYW~iGPQ~tLYVP~~~Lk~G~-N~IvvfE~ 732 (758)
.+..|||.+|+++.......++|.+.+- ....|||||..+|+-...-....+=|+. .|++|+ |+|.|.=.
T Consensus 67 ~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~~~~~dIt~-~l~~g~~N~l~V~v~ 138 (167)
T PF02837_consen 67 SGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYTPFEFDITD-YLKPGEENTLAVRVD 138 (167)
T ss_dssp CSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTTS-EEEECGG-GSSSEEEEEEEEEEE
T ss_pred CceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCcCCeEEeChh-hccCCCCEEEEEEEe
Confidence 5789999999998542234578999884 5999999999999976432334455765 789888 98877543
No 33
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.20 E-value=0.0043 Score=71.57 Aligned_cols=106 Identities=13% Similarity=0.128 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHcCCCEEEEecccCcCCCC--CCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCc
Q psy12280 149 EYWRDRLRKLRAMGANTVETYIAWNLHEPL--KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPS 226 (758)
Q Consensus 149 e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~--~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~ 226 (758)
..|+++++.||++|+|+.|+-|.|....|. +++++=+|. .=.+++|+.|.++||.+++-- -.=.+|.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~---~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~ 139 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGI---AFYRSVFEECKKYGIEPLVTL--------CHFDVPM 139 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHH---HHHHHHHHHHHHcCCEEEEEe--------eCCCCCH
Confidence 447999999999999999999999999997 445565554 556789999999999977653 1235899
Q ss_pred ccccC-CCceeccCCHhHHHHHHHHHHHHHH----HhhccccccCCCCE
Q psy12280 227 YLLRE-PGIKLRSMDPKYLNRVRQYFNNLIP----LLEPLQFIDGQGPI 270 (758)
Q Consensus 227 WL~~~-p~i~~Rt~dp~y~~~v~~w~~~l~~----~l~~~~~~nG~GpI 270 (758)
||..+ -+- .++...++..+|.+.++. +++-+.--|. +.+
T Consensus 140 ~l~~~~GGW----~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNE-Pn~ 183 (474)
T PRK09852 140 HLVTEYGSW----RNRKMVEFFSRYARTCFEAFDGLVKYWLTFNE-INI 183 (474)
T ss_pred HHHHhcCCC----CCHHHHHHHHHHHHHHHHHhcCcCCeEEeecc-hhh
Confidence 98754 222 234444444455444444 4444444465 443
No 34
>PLN02814 beta-glucosidase
Probab=96.08 E-value=0.0063 Score=70.72 Aligned_cols=111 Identities=14% Similarity=0.215 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHHcCCCEEEEecccCcCCCC-CCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcc
Q psy12280 149 EYWRDRLRKLRAMGANTVETYIAWNLHEPL-KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSY 227 (758)
Q Consensus 149 e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~-~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~W 227 (758)
..|+++++.||+||+|+-|+-|.|+..+|. .|.+|-+|. .=.+++|+.|.++||..++-- ==|+ +|.|
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl---~fY~~lId~l~~~GI~P~VTL-----~H~d---lP~~ 145 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGL---LFYKNLIKELRSHGIEPHVTL-----YHYD---LPQS 145 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHH---HHHHHHHHHHHHcCCceEEEe-----cCCC---CCHH
Confidence 458999999999999999999999999996 577787776 667889999999999866542 1265 7999
Q ss_pred cccC-CCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEE
Q psy12280 228 LLRE-PGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPII 271 (758)
Q Consensus 228 L~~~-p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpII 271 (758)
|.++ -+-.-|..=..|.++++.-++++..+++-+.--|. +.++
T Consensus 146 L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NE-P~~~ 189 (504)
T PLN02814 146 LEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINE-ATIF 189 (504)
T ss_pred HHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccc-cchh
Confidence 9875 33222222344555555555555555555554465 4444
No 35
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.02 E-value=0.0078 Score=69.51 Aligned_cols=102 Identities=13% Similarity=0.123 Sum_probs=73.9
Q ss_pred EeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCC--CCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccc
Q psy12280 139 GSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPL--KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYIC 216 (758)
Q Consensus 139 G~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~--~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIc 216 (758)
+|=||- .|+++++.||++|+|+.|+-|.|....|. +|+++-.|. .=.+++|+.|.++||..++--
T Consensus 64 A~D~Yh-----ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl---~~Y~~lid~l~~~GI~P~vTL----- 130 (477)
T PRK15014 64 AVDFYG-----HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGL---KFYDDMFDELLKYNIEPVITL----- 130 (477)
T ss_pred ccCccc-----ccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHH---HHHHHHHHHHHHcCCEEEEEe-----
Confidence 445553 47999999999999999999999999997 456677775 567789999999999977653
Q ss_pred cccCCCCCCcccccC-CCceeccCCHhHHHHHHHHHHHHHHHhhc
Q psy12280 217 AEWDFGGMPSYLLRE-PGIKLRSMDPKYLNRVRQYFNNLIPLLEP 260 (758)
Q Consensus 217 AEw~~GGlP~WL~~~-p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~ 260 (758)
-.=.+|.||..+ -+- .++...++..+|.+.++.++..
T Consensus 131 ---~H~dlP~~L~~~yGGW----~n~~~~~~F~~Ya~~~f~~fgd 168 (477)
T PRK15014 131 ---SHFEMPLHLVQQYGSW----TNRKVVDFFVRFAEVVFERYKH 168 (477)
T ss_pred ---eCCCCCHHHHHhcCCC----CChHHHHHHHHHHHHHHHHhcC
Confidence 112489999764 332 3445555555555555555543
No 36
>PLN02998 beta-glucosidase
Probab=96.02 E-value=0.0071 Score=70.15 Aligned_cols=111 Identities=12% Similarity=0.169 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEecccCcCCCC-CCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcc
Q psy12280 149 EYWRDRLRKLRAMGANTVETYIAWNLHEPL-KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSY 227 (758)
Q Consensus 149 e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~-~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~W 227 (758)
..|+++++.||+||+|+-|+-|-|+..+|. .|.+|=+|. .=.+++|+.|.++||..++-- ==|+ +|.|
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl---~~Y~~lid~L~~~GIeP~VTL-----~H~d---lP~~ 150 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGL---QYYNNLIDELITHGIQPHVTL-----HHFD---LPQA 150 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHH---HHHHHHHHHHHHcCCceEEEe-----cCCC---CCHH
Confidence 458999999999999999999999999996 566777776 667889999999999866442 0254 7999
Q ss_pred cccC-CCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEE
Q psy12280 228 LLRE-PGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPII 271 (758)
Q Consensus 228 L~~~-p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpII 271 (758)
|.++ -+-.-|..=..|.++++.-++++..+++-+.--|. +.++
T Consensus 151 L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NE-P~~~ 194 (497)
T PLN02998 151 LEDEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINE-VNVF 194 (497)
T ss_pred HHHhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccC-cchh
Confidence 9864 33322223345556666556666666655554465 4443
No 37
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=95.74 E-value=0.026 Score=63.81 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=68.1
Q ss_pred hhhH-----HHHHHHHHHcCCCEEEEecccCcCCCCC--CeeeeeCCCccccHHHHHHHHHHCCceEEecC----CCccc
Q psy12280 148 PEYW-----RDRLRKLRAMGANTVETYIAWNLHEPLK--DVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP----GPYIC 216 (758)
Q Consensus 148 ~e~W-----~drL~k~Ka~GlNtV~tYv~Wn~HEP~~--G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp----GPYIc 216 (758)
...| ++.+.+||.+|||+||.++.|..+++.. .-+-... ....-|++.++-|++.||+|++-. |.-.|
T Consensus 67 ~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~-~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~ 145 (407)
T COG2730 67 ESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGL-TQLKILDEAINWAKKLGIYVLIDLHGYPGGNNG 145 (407)
T ss_pred hhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecc-hHHHHHHHHHHHHHhcCeeEEEEecccCCCCCC
Confidence 5667 8999999999999999999944435543 1111111 011257888999999999999873 22222
Q ss_pred cccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEecccccccc
Q psy12280 217 AEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAV 281 (758)
Q Consensus 217 AEw~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~ 281 (758)
-| ..|.... .. ......++...-++.|+.+.+. - ..||++|+=||--.
T Consensus 146 ~~------~s~~~~~--~~---~~~~~~~~~~~~w~~ia~~f~~-----~-~~VIg~~~~NEP~~ 193 (407)
T COG2730 146 HE------HSGYTSD--YK---EENENVEATIDIWKFIANRFKN-----Y-DTVIGFELINEPNG 193 (407)
T ss_pred cC------ccccccc--cc---ccchhHHHHHHHHHHHHHhccC-----C-CceeeeeeecCCcc
Confidence 11 1222211 00 0111223333333334444443 3 69999999999863
No 38
>PLN02849 beta-glucosidase
Probab=95.68 E-value=0.012 Score=68.56 Aligned_cols=112 Identities=13% Similarity=0.177 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEecccCcCCCCC-CeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcc
Q psy12280 149 EYWRDRLRKLRAMGANTVETYIAWNLHEPLK-DVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSY 227 (758)
Q Consensus 149 e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~-G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~W 227 (758)
..|+++++.||+||+|+-|+-|.|...+|.. |.+|=.|. .=.+++|+.|.++||.-++-- ==|+ +|.|
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl---~fY~~lid~l~~~GI~P~VTL-----~H~d---lP~~ 147 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGL---QFYKNFIQELVKHGIEPHVTL-----FHYD---HPQY 147 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHH---HHHHHHHHHHHHcCCeEEEee-----cCCC---CcHH
Confidence 4589999999999999999999999999963 66676775 566789999999999866543 1254 8999
Q ss_pred cccC-CCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEE
Q psy12280 228 LLRE-PGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIM 272 (758)
Q Consensus 228 L~~~-p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIIm 272 (758)
|.++ -+-.-|..=..|.++++.-++++..+++-+.--|. +.++.
T Consensus 148 L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NE-P~~~~ 192 (503)
T PLN02849 148 LEDDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINE-ANIFT 192 (503)
T ss_pred HHHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecc-hhhhh
Confidence 9764 33222222344555555555555555555554466 55443
No 39
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.68 E-value=0.014 Score=67.53 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEecccCcCCCC--CCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCc
Q psy12280 149 EYWRDRLRKLRAMGANTVETYIAWNLHEPL--KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPS 226 (758)
Q Consensus 149 e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~--~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~ 226 (758)
..|+++++.||+||+|+-|.-|.|+..+|. +|+++=.|. .=.+++|+.|.++||..++-- | =|+ +|.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl---~~Y~~lId~L~~~GI~P~VTL--~---H~d---lP~ 141 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGL---QFYEDIFKECHKYGIEPLVTI--T---HFD---CPM 141 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHH---HHHHHHHHHHHHcCCEEEEEe--c---ccC---CCH
Confidence 568999999999999999999999999997 556666665 566789999999999866442 0 154 899
Q ss_pred ccccC-CCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCE
Q psy12280 227 YLLRE-PGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPI 270 (758)
Q Consensus 227 WL~~~-p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpI 270 (758)
||..+ -+-.-|..=..|.++++.-++++..+++-+.--|. +.+
T Consensus 142 ~L~~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NE-P~~ 185 (478)
T PRK09593 142 HLIEEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLTFNE-INM 185 (478)
T ss_pred HHHhhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEeecc-hhh
Confidence 99764 33322222234555555555555555554444465 443
No 40
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.64 E-value=0.013 Score=67.63 Aligned_cols=95 Identities=12% Similarity=0.174 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHcCCCEEEEecccCcCCCC-CCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcc
Q psy12280 149 EYWRDRLRKLRAMGANTVETYIAWNLHEPL-KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSY 227 (758)
Q Consensus 149 e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~-~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~W 227 (758)
..|+++++.||++|+|+-|+-|.|+..+|. .|.+|-.|. .=.+++|+.|.++||.-++-- | =|+ +|.|
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl---~~Y~~lid~l~~~GI~P~VTL--~---H~d---lP~~ 122 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGV---EYYHRLFAECHKRHVEPFVTL--H---HFD---TPEA 122 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHH---HHHHHHHHHHHHcCCEEEEEe--c---CCC---CcHH
Confidence 347999999999999999999999999997 466777775 667789999999999865543 0 144 8999
Q ss_pred cccCCCceeccCCHhHHHHHHHHHHHHHHHh
Q psy12280 228 LLREPGIKLRSMDPKYLNRVRQYFNNLIPLL 258 (758)
Q Consensus 228 L~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l 258 (758)
|.+.-+- .++...+...+|-+.++.++
T Consensus 123 L~~~GGW----~n~~~v~~F~~YA~~~~~~f 149 (469)
T PRK13511 123 LHSNGDW----LNRENIDHFVRYAEFCFEEF 149 (469)
T ss_pred HHHcCCC----CCHHHHHHHHHHHHHHHHHh
Confidence 9865332 34444444444444444444
No 41
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.52 E-value=0.015 Score=67.17 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEecccCcCCCC--CCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCc
Q psy12280 149 EYWRDRLRKLRAMGANTVETYIAWNLHEPL--KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPS 226 (758)
Q Consensus 149 e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~--~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~ 226 (758)
..|+++++.||+||+|+-|+-|.|+..+|. +|+++=.|. .=.+++|+.|.++||..++-- ==|+ +|.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl---~~Y~~lid~L~~~GI~P~VTL-----~H~d---lP~ 135 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGL---QFYDDLFDECLKQGIEPVVTL-----SHFE---MPY 135 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHH---HHHHHHHHHHHHcCCEEEEEe-----cCCC---CCH
Confidence 458999999999999999999999999997 455666665 556789999999999866543 0254 899
Q ss_pred ccccC-CCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCE
Q psy12280 227 YLLRE-PGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPI 270 (758)
Q Consensus 227 WL~~~-p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpI 270 (758)
||..+ -+-.-|..-..|.++++.-++++..+++-+.--|. +.+
T Consensus 136 ~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NE-p~~ 179 (476)
T PRK09589 136 HLVTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNE-INN 179 (476)
T ss_pred HHHHhcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecc-hhh
Confidence 99764 33322322344555555555555555555544465 443
No 42
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.52 E-value=0.017 Score=66.69 Aligned_cols=100 Identities=14% Similarity=0.159 Sum_probs=71.4
Q ss_pred EeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCC-CCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCcccc
Q psy12280 139 GSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPL-KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICA 217 (758)
Q Consensus 139 G~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~-~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcA 217 (758)
++=|| ..|+++++.||+||+|+-|+-|.|+..+|. .|.++=+|. .=.+++|+.|.++||..++--=
T Consensus 48 a~d~y-----hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl---~~Y~~lid~l~~~GI~P~VTL~----- 114 (467)
T TIGR01233 48 ASDFY-----HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGV---EFYHKLFAECHKRHVEPFVTLH----- 114 (467)
T ss_pred cCchh-----hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHH---HHHHHHHHHHHHcCCEEEEecc-----
Confidence 45555 458999999999999999999999999996 566666675 5667899999999999776531
Q ss_pred ccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHh
Q psy12280 218 EWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLL 258 (758)
Q Consensus 218 Ew~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l 258 (758)
=|+ +|.||.+.-+= .++...++..+|-+.++..+
T Consensus 115 H~d---lP~~L~~~GGW----~n~~~v~~F~~YA~~~f~~f 148 (467)
T TIGR01233 115 HFD---TPEALHSNGDF----LNRENIEHFIDYAAFCFEEF 148 (467)
T ss_pred CCC---CcHHHHHcCCC----CCHHHHHHHHHHHHHHHHHh
Confidence 144 89999865333 23444444444444444444
No 43
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.27 E-value=0.073 Score=51.48 Aligned_cols=97 Identities=9% Similarity=0.126 Sum_probs=63.2
Q ss_pred HHHHHHHHcCCCEEEEecc----cCc-----CCCCCCeeeeeCCCccccH-HHHHHHHHHCCceEEecCCCccccccCCC
Q psy12280 153 DRLRKLRAMGANTVETYIA----WNL-----HEPLKDVYEFGDNNKDIDF-VKFIKIAQEEDLFVIIRPGPYICAEWDFG 222 (758)
Q Consensus 153 drL~k~Ka~GlNtV~tYv~----Wn~-----HEP~~G~fdF~g~~~~~DL-~~Fl~la~e~GL~VIlRpGPYIcAEw~~G 222 (758)
+-++.+|++|+|+|.++.= |.+ |.+.|+- .+|| .+++++|++.||.|++|.-.- -.|+..-
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L--------~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~ 74 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL--------KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAE 74 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC--------CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHH
Confidence 3467899999999998542 333 3333332 1354 789999999999999997544 4455455
Q ss_pred CCCcccccCCCce-------------eccCCHhHHHHHHHHHHHHHHHh
Q psy12280 223 GMPSYLLREPGIK-------------LRSMDPKYLNRVRQYFNNLIPLL 258 (758)
Q Consensus 223 GlP~WL~~~p~i~-------------~Rt~dp~y~~~v~~w~~~l~~~l 258 (758)
-.|.|+..+++-+ .-..+.+|++.+.+-+++++..+
T Consensus 75 ~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 75 RHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred hCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 6799998764422 11234578877666555555443
No 44
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.08 E-value=0.1 Score=56.65 Aligned_cols=115 Identities=22% Similarity=0.175 Sum_probs=72.7
Q ss_pred HHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHH---CCceEEecCCCccccccCCCCCCccc
Q psy12280 152 RDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQE---EDLFVIIRPGPYICAEWDFGGMPSYL 228 (758)
Q Consensus 152 ~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e---~GL~VIlRpGPYIcAEw~~GGlP~WL 228 (758)
.|.|+.+|+.|+|-||.= .||..--..|.=-=.|+ .|+...+++|++ .||+|++-.= | .+=|.--| -
T Consensus 66 qD~~~iLK~~GvNyvRlR-vwndP~dsngn~yggGn---nD~~k~ieiakRAk~~GmKVl~dFH-Y-SDfwaDPa---k- 135 (403)
T COG3867 66 QDALQILKNHGVNYVRLR-VWNDPYDSNGNGYGGGN---NDLKKAIEIAKRAKNLGMKVLLDFH-Y-SDFWADPA---K- 135 (403)
T ss_pred HHHHHHHHHcCcCeEEEE-EecCCccCCCCccCCCc---chHHHHHHHHHHHHhcCcEEEeecc-c-hhhccChh---h-
Confidence 689999999999999984 36665444455444566 899999988765 6999998851 1 01111100 0
Q ss_pred ccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEecccccccc
Q psy12280 229 LREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAV 281 (758)
Q Consensus 229 ~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~ 281 (758)
.++|..-..-+-..-.+++-.|.+..+..+++-=+ -+=||||.||-.+
T Consensus 136 Q~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi-----~pdmVQVGNEtn~ 183 (403)
T COG3867 136 QKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGI-----LPDMVQVGNETNG 183 (403)
T ss_pred cCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-----CccceEeccccCC
Confidence 00121111113344467777888888888876544 3449999999843
No 45
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.95 E-value=0.096 Score=60.09 Aligned_cols=107 Identities=13% Similarity=0.177 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEecccCcCCCCCCe--eeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCc
Q psy12280 149 EYWRDRLRKLRAMGANTVETYIAWNLHEPLKDV--YEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPS 226 (758)
Q Consensus 149 e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~--fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~ 226 (758)
..++++++.||+||+|+.|+-|.|+..-|..+. .+=.|. .=.+++++.|.++|+.-++-- -=|+ +|.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl---~fY~~l~del~~~gIep~vTL-----~Hfd---~P~ 127 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGL---RFYDRLFDELKARGIEPFVTL-----YHFD---LPL 127 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHH---HHHHHHHHHHHHcCCEEEEEe-----cccC---CcH
Confidence 347899999999999999999999999996544 666664 446788999999999966542 1255 799
Q ss_pred ccccC-CCceeccCCHhHHHHHHHHHHHHHHHhhccccccC
Q psy12280 227 YLLRE-PGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDG 266 (758)
Q Consensus 227 WL~~~-p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG 266 (758)
||.++ -+=.-|..=..|.++.+--+++...+++-+.--|.
T Consensus 128 ~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE 168 (460)
T COG2723 128 WLQKPYGGWENRETVDAFARYAATVFERFGDKVKYWFTFNE 168 (460)
T ss_pred HHhhccCCccCHHHHHHHHHHHHHHHHHhcCcceEEEEecc
Confidence 99876 34322333333444444434444444444444465
No 46
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=93.71 E-value=2.7 Score=45.43 Aligned_cols=197 Identities=16% Similarity=0.230 Sum_probs=116.7
Q ss_pred CCC-hhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCC
Q psy12280 145 RVR-PEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGG 223 (758)
Q Consensus 145 R~p-~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GG 223 (758)
+++ -+.-+-+|+.+|.-+- .||+|- . .- .-|+.++.+|.+.|+.|+|..
T Consensus 58 tCKSa~~~~sDLe~l~~~t~-~IR~Y~--s------------DC---n~le~v~pAa~~~g~kv~lGi------------ 107 (305)
T COG5309 58 TCKSADQVASDLELLASYTH-SIRTYG--S------------DC---NTLENVLPAAEASGFKVFLGI------------ 107 (305)
T ss_pred CCcCHHHHHhHHHHhccCCc-eEEEee--c------------cc---hhhhhhHHHHHhcCceEEEEE------------
Confidence 444 5778999999998887 999974 1 11 447788999999999999885
Q ss_pred CCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCCCC--cchHHHHHHHHHHHHh
Q psy12280 224 MPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPN--VADKNYMRELVAMLRS 301 (758)
Q Consensus 224 lP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~~y--~~d~~Y~~~L~~~~~~ 301 (758)
|+..+ - ...+++ .++..+.+. +|-..|..+-|+||.=.-..- ..-.+|+...+.++++
T Consensus 108 ---w~tdd---------~--~~~~~~---til~ay~~~---~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~ 167 (305)
T COG5309 108 ---WPTDD---------I--HDAVEK---TILSAYLPY---NGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKE 167 (305)
T ss_pred ---eeccc---------h--hhhHHH---HHHHHHhcc---CCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHh
Confidence 44432 1 122222 344444333 443688899999996321101 2346799999999999
Q ss_pred cCCCcceEEcCCCCCCCCCCC---cccce-----eecccCC---hHHH-----HHHhhhcCCC-CCceeeecccccccc-
Q psy12280 302 NGIRSPLFTADDPSMGDSGSL---IEDVL-----YAANILY---AGEE-----LRKLSYMQPN-KPLMVMEWWTGWFDT- 363 (758)
Q Consensus 302 ~G~~vpl~T~dg~~~~~~G~~---~~~vl-----~t~nf~~---~~~~-----f~~~~~~~P~-~P~~~sEf~~GWf~~- 363 (758)
+|.++|+.|.|.+..+..+-. ..+.+ +-.+... ..+. .+.++...+. ++++++| +||...
T Consensus 168 agy~gpV~T~dsw~~~~~np~l~~~SDfia~N~~aYwd~~~~a~~~~~f~~~q~e~vqsa~g~~k~~~v~E--tGWPS~G 245 (305)
T COG5309 168 AGYDGPVTTVDSWNVVINNPELCQASDFIAANAHAYWDGQTVANAAGTFLLEQLERVQSACGTKKTVWVTE--TGWPSDG 245 (305)
T ss_pred cCCCCceeecccceeeeCChHHhhhhhhhhcccchhccccchhhhhhHHHHHHHHHHHHhcCCCccEEEee--ccCCCCC
Confidence 999999999999764333210 11111 1111111 1111 2223334455 8999999 588765
Q ss_pred --cCCCCCCCCChHHHHHHHHHHHh--CCceeeeeec
Q psy12280 364 --WAKNRHNTFPTNEYEMTLQSLLE--YPVSLNLFMF 396 (758)
Q Consensus 364 --WG~~~~~~~~~~~~~~~l~~~l~--~G~s~N~YMf 396 (758)
.|+ ...+.+.....+++++. ++...++|.|
T Consensus 246 ~~~G~---a~pS~anq~~~~~~i~~~~~~~G~d~fvf 279 (305)
T COG5309 246 RTYGS---AVPSVANQKIAVQEILNALRSCGYDVFVF 279 (305)
T ss_pred CccCC---cCCChhHHHHHHHHHHhhhhccCccEEEe
Confidence 333 22233333344555543 2334566655
No 47
>PRK10150 beta-D-glucuronidase; Provisional
Probab=91.69 E-value=0.59 Score=55.54 Aligned_cols=67 Identities=28% Similarity=0.337 Sum_probs=50.6
Q ss_pred ccceEEEeecccccCCC---CCceeEeccccceEEEEEECCccccCCcCCcCCcceeEEEEccceeEEEecC----CC-C
Q psy12280 514 SFGYTLYRQPDWHIPTD---QDAIMRIEGRVADIAIVMVNQERQTVPLSDVQDLNEFGFWKTENAELLLNIT----RP-A 585 (758)
Q Consensus 514 ~~GyvlYrt~~~~i~~~---~~~~L~i~~~~~D~a~Vfvng~~~~~~~~~~~~~~~vG~l~~~~~~~~l~~~----~~-~ 585 (758)
..|..|||++ |.++.. ....|.. +++.-.|.|||||+ ++|........+.++++ .+ .
T Consensus 63 ~~G~~WYrr~-f~lp~~~~gk~v~L~F-egv~~~a~V~lNG~-------------~vg~~~~~~~~f~~DIT~~l~~G~~ 127 (604)
T PRK10150 63 YVGDVWYQRE-VFIPKGWAGQRIVLRF-GSVTHYAKVWVNGQ-------------EVMEHKGGYTPFEADITPYVYAGKS 127 (604)
T ss_pred CcccEEEEEE-EECCcccCCCEEEEEE-CcccceEEEEECCE-------------EeeeEcCCccceEEeCchhccCCCc
Confidence 4688999998 888653 2367776 89999999999999 99988765444444442 34 4
Q ss_pred cEEEEEEecc
Q psy12280 586 NNIDILVENT 595 (758)
Q Consensus 586 ~~L~ILVEN~ 595 (758)
|+|.|.|+|.
T Consensus 128 n~L~V~v~n~ 137 (604)
T PRK10150 128 VRITVCVNNE 137 (604)
T ss_pred eEEEEEEecC
Confidence 5999999874
No 48
>smart00642 Aamy Alpha-amylase domain.
Probab=91.66 E-value=0.41 Score=47.80 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEecccCcCC-------CCCCee-----eeeCCCccccHHHHHHHHHHCCceEEecCCC
Q psy12280 149 EYWRDRLRKLRAMGANTVETYIAWNLHE-------PLKDVY-----EFGDNNKDIDFVKFIKIAQEEDLFVIIRPGP 213 (758)
Q Consensus 149 e~W~drL~k~Ka~GlNtV~tYv~Wn~HE-------P~~G~f-----dF~g~~~~~DL~~Fl~la~e~GL~VIlRpGP 213 (758)
+-+.++|.-+|++|+|+|.+-=++.... -.+..| .|... .||+++++.|+++||.||+-.=|
T Consensus 19 ~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~---~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 19 QGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTM---EDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred HHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCH---HHHHHHHHHHHHCCCEEEEEECC
Confidence 4466778889999999998853332221 111111 34444 89999999999999999987644
No 49
>PRK09936 hypothetical protein; Provisional
Probab=90.08 E-value=4.1 Score=44.54 Aligned_cols=59 Identities=22% Similarity=0.355 Sum_probs=48.7
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEec
Q psy12280 144 FRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIR 210 (758)
Q Consensus 144 ~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlR 210 (758)
.+++++.|+++++.+|+.||+|+= |=|..- |.=||.+. +..|.+.++.|++.||.|++.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLi--vQWt~y----G~~~fg~~--~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLV--VQWTRY----GDADFGGQ--RGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEE--EEeeec----cCCCcccc--hHHHHHHHHHHHHcCCEEEEc
Confidence 588999999999999999999974 467554 11188775 467999999999999999976
No 50
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=89.99 E-value=2.6 Score=49.33 Aligned_cols=258 Identities=17% Similarity=0.228 Sum_probs=134.9
Q ss_pred ccCCcccccccccCCCCCCceEeEEEeeeeccceeeeEeecCCCceEEECCEEeEEEEEeecC------CCCChhhHHHH
Q psy12280 81 PVTTDSEILMTSSEDGGSPIITNYIYYEFEKNKENTGLQYDDNPNTFLLNGKEFRILSGSIHY------FRVRPEYWRDR 154 (758)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~d~~~~~f~lnGkp~~i~sG~~Hy------~R~p~e~W~dr 154 (758)
+++..+....+++.++..-..+.. ..+.....-...|+.|. -.--|.+.=+||++=- .+++++.=+..
T Consensus 29 ~~~~g~~~~y~ts~~g~rl~~~~~-~~~~~~~~~~~~i~id~-----~~~yQ~i~GFGga~Tdasa~~l~~l~~~~r~~l 102 (496)
T PF02055_consen 29 PPAAGQAAVYTTSKSGARLKQSVG-NITNSDPSSSVTITIDP-----STTYQTIDGFGGAFTDASAYNLQKLSEEQRDEL 102 (496)
T ss_dssp ---TTEEEEEEEETTS-ESEEEEE-EEBSS--SSSEEEEEEE-----EEEEEE--EEEEE--HHHHHHHHTS-HHHHHHH
T ss_pred cCCCCeEEEEEECCccchhhhhhh-cccccccccceeeeecc-----cccceEEEEEeeeHHHHHHHHHHhCCHHHHHHH
Confidence 445677788888888776555432 22322222233444433 1123566778998743 45565544444
Q ss_pred HHHH---HHcCCCEEEEecc---cCcCCC----CCCeeeeeCCCc-ccc---HHHHHHHHHHC--CceEEecCCCccccc
Q psy12280 155 LRKL---RAMGANTVETYIA---WNLHEP----LKDVYEFGDNNK-DID---FVKFIKIAQEE--DLFVIIRPGPYICAE 218 (758)
Q Consensus 155 L~k~---Ka~GlNtV~tYv~---Wn~HEP----~~G~fdF~g~~~-~~D---L~~Fl~la~e~--GL~VIlRpGPYIcAE 218 (758)
|+.+ +.+|++.+|+.|- .+.++. .|+-|+.+..+- +.| +-.+|+.|++. +|+++.-|
T Consensus 103 l~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp------- 175 (496)
T PF02055_consen 103 LRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP------- 175 (496)
T ss_dssp HHHHHSTTTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE-------
T ss_pred HHHHhhcCCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec-------
Confidence 5444 5689999998765 222211 123221111000 113 23577777663 68899888
Q ss_pred cCCCCCCcccccCCCce----ec-cCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccC----CCC----
Q psy12280 219 WDFGGMPSYLLREPGIK----LR-SMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVL----GPN---- 285 (758)
Q Consensus 219 w~~GGlP~WL~~~p~i~----~R-t~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~----~~y---- 285 (758)
|. .|+|++....+. ++ ...+.|.+....||.+.+..+++ +| =+|=++.+-||-... ..|
T Consensus 176 WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~----~G-I~i~aiT~QNEP~~~~~~~~~~~s~~ 247 (496)
T PF02055_consen 176 WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKK----EG-IPIWAITPQNEPDNGSDPNYPWPSMG 247 (496)
T ss_dssp S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHC----TT---ESEEESSSSCCGGGSTT-SSC--B
T ss_pred CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHH----CC-CCeEEEeccCCCCCCCCCCCCCCcCC
Confidence 87 799998764332 33 23467888888888888888764 46 799999999997531 112
Q ss_pred ---cchHHHHH-HHHHHHHhcCC--CcceEEcCCCC-CCCC-------CCCcccceeeccc---CC--hHHHHHHhhhcC
Q psy12280 286 ---VADKNYMR-ELVAMLRSNGI--RSPLFTADDPS-MGDS-------GSLIEDVLYAANI---LY--AGEELRKLSYMQ 346 (758)
Q Consensus 286 ---~~d~~Y~~-~L~~~~~~~G~--~vpl~T~dg~~-~~~~-------G~~~~~vl~t~nf---~~--~~~~f~~~~~~~ 346 (758)
...+++++ .|.-.++++|+ ++-++..|... .+.. .......++.+-| .. ........++.+
T Consensus 248 ~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~ 327 (496)
T PF02055_consen 248 WTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWYGGDPSPQALDQVHNKF 327 (496)
T ss_dssp --HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETTCS-HCHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECCCCCchhhHHHHHHHHC
Confidence 12356665 37778888866 77777766422 1110 0001112222221 11 224566778899
Q ss_pred CCCCceeeecccc
Q psy12280 347 PNKPLMVMEWWTG 359 (758)
Q Consensus 347 P~~P~~~sEf~~G 359 (758)
|++.++.||-..|
T Consensus 328 P~k~l~~TE~~~g 340 (496)
T PF02055_consen 328 PDKFLLFTEACCG 340 (496)
T ss_dssp TTSEEEEEEEESS
T ss_pred CCcEEEeeccccC
Confidence 9999999998765
No 51
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=89.76 E-value=3.3 Score=49.57 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=78.5
Q ss_pred HHHH-HHHHHcCCCEEEE-ecccCcC----CCCCC-----eeeeeCCCccccHHHHHHHHHHCCceEEecCCC-cccc--
Q psy12280 152 RDRL-RKLRAMGANTVET-YIAWNLH----EPLKD-----VYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGP-YICA-- 217 (758)
Q Consensus 152 ~drL-~k~Ka~GlNtV~t-Yv~Wn~H----EP~~G-----~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGP-YIcA-- 217 (758)
.++| .-+|++|+|+|.. .|+.+-. -..+- .-.|.+. .||.+|++.|+++||.|||-.=+ ..+.
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~---~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~ 235 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTP---DDFMYFVDACHQAGIGVILDWVPGHFPKDD 235 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCH---HHHHHHHHHHHHCCCEEEEEecccCcCCcc
Confidence 3454 7789999999998 4554211 10000 0123333 79999999999999999987422 1111
Q ss_pred --ccCCCCCCcccccCCC---------ceeccCCHhHHHHHHHHHHHHHHH--hhccccccCCCCEEEec--------cc
Q psy12280 218 --EWDFGGMPSYLLREPG---------IKLRSMDPKYLNRVRQYFNNLIPL--LEPLQFIDGQGPIIMLG--------VE 276 (758)
Q Consensus 218 --Ew~~GGlP~WL~~~p~---------i~~Rt~dp~y~~~v~~w~~~l~~~--l~~~~~~nG~GpIImvQ--------IE 276 (758)
-+.+.|.|.|...++. ..+...+|.-++++....+..+.. +-.+....- ..++.++ ..
T Consensus 236 ~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v-~~~~~~~~~~~~~~~~~ 314 (613)
T TIGR01515 236 HGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAV-ASMLYLDYSRDEGEWSP 314 (613)
T ss_pred chhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCH-HHhhhhccccccccccc
Confidence 1122333433322211 012334454444333333333322 211111110 1233222 22
Q ss_pred cccccCCCCcchHHHHHHHHHHHHhcCCCcceEEcC
Q psy12280 277 NELAVLGPNVADKNYMRELVAMLRSNGIRSPLFTAD 312 (758)
Q Consensus 277 NEyg~~~~y~~d~~Y~~~L~~~~~~~G~~vpl~T~d 312 (758)
||+++.. -.....|++.+.+.+++...++.++.=+
T Consensus 315 ~~~~~~~-~~~~~~fl~~~~~~v~~~~p~~~liaE~ 349 (613)
T TIGR01515 315 NEDGGRE-NLEAVDFLRKLNQTVYEAFPGVVTIAEE 349 (613)
T ss_pred cccCCcC-ChHHHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 4554310 0234679999999999887776666543
No 52
>KOG0496|consensus
Probab=88.47 E-value=0.2 Score=59.23 Aligned_cols=57 Identities=32% Similarity=0.500 Sum_probs=40.7
Q ss_pred eeeeecccccCC---CcCCCCCCCCCCCCCCCccccCCCCCCCCCCCCC-chhHHHHHHHHHHHh
Q psy12280 391 LNLFMFHGGTSW---GFYNGANIDKSLDKYTPDTTSYDYDAPLTEGGDY-TAKYWITRKYFLQVA 451 (758)
Q Consensus 391 ~N~YMfhGGTNf---G~~~Ga~~~~~~~~y~p~~TSYDYdAPi~E~G~~-t~Ky~~lR~li~~~~ 451 (758)
+-.+.-+||+.. -+-+|-|+.-..+.| .+|||||||||+ |.. +|||.+++.+|..+.
T Consensus 270 va~fls~ggs~vNyYM~hGGTNFGrt~G~~--~atsy~~dap~d--gl~~~pk~ghlk~~hts~d 330 (649)
T KOG0496|consen 270 VARFLSKGGSSVNYYMYHGGTNFGRTNGPF--IATSYDYDAPLD--GLLRQPKYGHLKPLHTSYD 330 (649)
T ss_pred HHHHHhcCccceEEEEeecccCCCcccCcc--cccccccccccc--hhhcCCCccccccchhhhh
Confidence 455677787764 333455543222222 589999999999 765 899999999999987
No 53
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=87.68 E-value=4 Score=46.33 Aligned_cols=142 Identities=18% Similarity=0.236 Sum_probs=81.9
Q ss_pred eecCCCCChhhHHHHHHHHHHcCCCEEEE-------ecccCcCCCCCCeeeeeCCCccccHHH-HHHHHHHCCceEEecC
Q psy12280 140 SIHYFRVRPEYWRDRLRKLRAMGANTVET-------YIAWNLHEPLKDVYEFGDNNKDIDFVK-FIKIAQEEDLFVIIRP 211 (758)
Q Consensus 140 ~~Hy~R~p~e~W~drL~k~Ka~GlNtV~t-------Yv~Wn~HEP~~G~fdF~g~~~~~DL~~-Fl~la~e~GL~VIlRp 211 (758)
.+.+.+..++.|.+ .+|++|+.-|-. +..|...-..-..-+-.. .+||.+ |.+.|+++||.+-+
T Consensus 75 ~F~p~~fD~~~Wa~---~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p---krDiv~el~~A~rk~Glk~G~-- 146 (384)
T smart00812 75 QFTAEKFDPEEWAD---LFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP---KRDLVGELADAVRKRGLKFGL-- 146 (384)
T ss_pred cCCchhCCHHHHHH---HHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC---CcchHHHHHHHHHHcCCeEEE--
Confidence 45666778888876 678888885532 233554432111111111 378765 88999999998776
Q ss_pred CCccc-cccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCCCCcchHH
Q psy12280 212 GPYIC-AEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNVADKN 290 (758)
Q Consensus 212 GPYIc-AEw~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~~y~~d~~ 290 (758)
|-. -+|.. |.|....+.-..+.+.+.|.++++.|+.+|.+.|..+ ||-++|- +-..+. - ...-
T Consensus 147 --Y~S~~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y------gpd~lWf-D~~~~~---~-~~~~ 210 (384)
T smart00812 147 --YHSLFDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY------KPDLLWF-DGGWEA---P-DDYW 210 (384)
T ss_pred --EcCHHHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC------CCceEEE-eCCCCC---c-cchh
Confidence 433 36653 4443211111123456789999988988888888765 4555552 222211 0 1111
Q ss_pred HHHHHHHHHHhcCCC
Q psy12280 291 YMRELVAMLRSNGIR 305 (758)
Q Consensus 291 Y~~~L~~~~~~~G~~ 305 (758)
-++.|.+++++...+
T Consensus 211 ~~~~l~~~~~~~qP~ 225 (384)
T smart00812 211 RSKEFLAWLYNLSPV 225 (384)
T ss_pred cHHHHHHHHHHhCCC
Confidence 256677888877554
No 54
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=87.35 E-value=2.2 Score=46.83 Aligned_cols=123 Identities=15% Similarity=0.053 Sum_probs=66.8
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecccC-------cCCCCCCeeee-eCCCc-cccHHHHHHHHHHCCceEEecCCCcccc
Q psy12280 147 RPEYWRDRLRKLRAMGANTVETYIAWN-------LHEPLKDVYEF-GDNNK-DIDFVKFIKIAQEEDLFVIIRPGPYICA 217 (758)
Q Consensus 147 p~e~W~drL~k~Ka~GlNtV~tYv~Wn-------~HEP~~G~fdF-~g~~~-~~DL~~Fl~la~e~GL~VIlRpGPYIcA 217 (758)
.++.-+..|++++++|||+|=.=|-+. -.+|..+..-. .|... .-=|+.+|+.|++.||.|.... .+-..
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~-~~~~~ 95 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWF-RVGFN 95 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEE-EeecC
Confidence 477889999999999999996544431 12221110000 00000 0127889999999999999765 11111
Q ss_pred ccCC----CCCCcccc-cCCCceecc----CCH----hHHHHHHHHHHHHHHHhhccccccCCCCEEEeccc
Q psy12280 218 EWDF----GGMPSYLL-REPGIKLRS----MDP----KYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVE 276 (758)
Q Consensus 218 Ew~~----GGlP~WL~-~~p~i~~Rt----~dp----~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIE 276 (758)
--.. -..|.|+. +.++..... ..- +-..+|++++..++..|.... +|=++|++
T Consensus 96 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Y------dvDGIhlD 161 (311)
T PF02638_consen 96 APDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNY------DVDGIHLD 161 (311)
T ss_pred CCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcC------CCCeEEec
Confidence 0111 12578876 345432222 111 124677777777666665432 23356766
No 55
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=87.14 E-value=2 Score=54.48 Aligned_cols=90 Identities=19% Similarity=0.249 Sum_probs=59.7
Q ss_pred ceEEEeecccccCCC---CCceeEeccccceEEEEEECCccccCCcCCcCCcceeEEEEccce--eEEEec--CCCCcEE
Q psy12280 516 GYTLYRQPDWHIPTD---QDAIMRIEGRVADIAIVMVNQERQTVPLSDVQDLNEFGFWKTENA--ELLLNI--TRPANNI 588 (758)
Q Consensus 516 GyvlYrt~~~~i~~~---~~~~L~i~~~~~D~a~Vfvng~~~~~~~~~~~~~~~vG~l~~~~~--~~~l~~--~~~~~~L 588 (758)
|--+||++ |.++.. ....|.. +++.-.|.|||||+ ++|.-.+... ++.++. ..+.|+|
T Consensus 109 ~~g~Yrr~-F~lp~~~~gkrv~L~F-eGV~s~a~VwvNG~-------------~VG~~~g~~~pfefDIT~~l~~G~N~L 173 (1021)
T PRK10340 109 PTGAYQRT-FTLSDGWQGKQTIIKF-DGVETYFEVYVNGQ-------------YVGFSKGSRLTAEFDISAMVKTGDNLL 173 (1021)
T ss_pred CeEEEEEE-EEeCcccccCcEEEEE-CccceEEEEEECCE-------------EeccccCCCccEEEEcchhhCCCccEE
Confidence 55699998 988753 2367776 89999999999999 9998766433 344432 2467999
Q ss_pred EEEEeccCCCccccCcccccccccccccccCCceEEeCC
Q psy12280 589 DILVENTGRVNYWLNDDFKYSNIKKGLGTSFDNVVTVNN 627 (758)
Q Consensus 589 ~ILVEN~GRvNy~~~~~~~~~~~~KGI~~g~~~~V~L~g 627 (758)
.|.|.+...-.| +.++.++ +.-|| .. + |.|--
T Consensus 174 aV~V~~~~d~s~-le~qd~w--~~sGI-~R--~-V~L~~ 205 (1021)
T PRK10340 174 CVRVMQWADSTY-LEDQDMW--WLAGI-FR--D-VYLVG 205 (1021)
T ss_pred EEEEEecCCCCc-cccCCcc--ccccc-cc--e-EEEEE
Confidence 999986544333 1111011 14788 55 6 88744
No 56
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=86.79 E-value=2.2 Score=54.13 Aligned_cols=91 Identities=12% Similarity=0.165 Sum_probs=59.5
Q ss_pred cceEEEeecccccCCC---C-CceeEeccccceEEEEEECCccccCCcCCcCCcceeEEEEccceeEEEec----CCCCc
Q psy12280 515 FGYTLYRQPDWHIPTD---Q-DAIMRIEGRVADIAIVMVNQERQTVPLSDVQDLNEFGFWKTENAELLLNI----TRPAN 586 (758)
Q Consensus 515 ~GyvlYrt~~~~i~~~---~-~~~L~i~~~~~D~a~Vfvng~~~~~~~~~~~~~~~vG~l~~~~~~~~l~~----~~~~~ 586 (758)
.|-.|||++ |+++.. . ...|.. +++.-.+.|||||+ ++|.-.+....+.+.+ ..+.|
T Consensus 119 n~~gwYrr~-F~vp~~w~~~~rv~L~F-eGV~~~a~VwvNG~-------------~VG~~~g~~~pfefDIT~~l~~G~N 183 (1027)
T PRK09525 119 NPTGCYSLT-FTVDESWLQSGQTRIIF-DGVNSAFHLWCNGR-------------WVGYSQDSRLPAEFDLSPFLRAGEN 183 (1027)
T ss_pred CCeEEEEEE-EEeChhhcCCCeEEEEE-CeeccEEEEEECCE-------------EEEeecCCCceEEEEChhhhcCCcc
Confidence 367899998 988753 2 466776 89999999999999 9998766433344443 24678
Q ss_pred EEEEEEeccCCCccccCcccccccccccccccCCceEEeCC
Q psy12280 587 NIDILVENTGRVNYWLNDDFKYSNIKKGLGTSFDNVVTVNN 627 (758)
Q Consensus 587 ~L~ILVEN~GRvNy~~~~~~~~~~~~KGI~~g~~~~V~L~g 627 (758)
+|.|.|...-.-+| +.++.++ +..|| .. + |.|--
T Consensus 184 ~L~V~V~~~sdgs~-~e~qd~w--~~sGI-~R--~-V~L~~ 217 (1027)
T PRK09525 184 RLAVMVLRWSDGSY-LEDQDMW--RMSGI-FR--D-VSLLH 217 (1027)
T ss_pred EEEEEEEecCCCCc-cccCCce--eeccc-cc--e-EEEEE
Confidence 99999854332233 1121111 14699 55 6 88743
No 57
>PRK05402 glycogen branching enzyme; Provisional
Probab=85.97 E-value=7.4 Score=47.62 Aligned_cols=54 Identities=24% Similarity=0.249 Sum_probs=35.6
Q ss_pred HHHHHHcCCCEEEEe-ccc----CcCCCCCCe-----eeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 155 LRKLRAMGANTVETY-IAW----NLHEPLKDV-----YEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 155 L~k~Ka~GlNtV~tY-v~W----n~HEP~~G~-----fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
|.-+|++|+|+|..- |+= +.|-..+.- =.|.+ ..||.+|++.|+++||.|||-.
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt---~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGT---PDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCC---HHHHHHHHHHHHHCCCEEEEEE
Confidence 477799999999874 320 001111111 12333 3799999999999999999873
No 58
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=85.57 E-value=11 Score=39.99 Aligned_cols=130 Identities=15% Similarity=0.160 Sum_probs=76.7
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEE-ecCCCccccccCCCCCCc
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVI-IRPGPYICAEWDFGGMPS 226 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VI-lRpGPYIcAEw~~GGlP~ 226 (758)
..-|++.|+.++++|+..|+.-+ +..| ..+...+++. .++..+.+++++.||.|. +.+++ + +.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~~-~~~~~~~~~~----~~~~~~~~~l~~~gl~i~~~~~~~-----~--~~~~- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DETD-DRLSRLDWSR----EQRLALVNAIIETGVRIPSMCLSA-----H--RRFP- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCcc-chhhccCCCH----HHHHHHHHHHHHcCCCceeeecCC-----C--ccCc-
Confidence 56799999999999999999942 2222 2233455554 578899999999999975 33321 0 0111
Q ss_pred ccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCCCC----cchHHHHHHHHHHHHhc
Q psy12280 227 YLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPN----VADKNYMRELVAMLRSN 302 (758)
Q Consensus 227 WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~~y----~~d~~Y~~~L~~~~~~~ 302 (758)
+-..++.-+++..+.+++.+...+.+ | .++|.+- ..++...... ..-.+.++.|.+.++++
T Consensus 81 ---------l~~~~~~~r~~~~~~~~~~i~~a~~l----G-~~~v~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~ 145 (279)
T TIGR00542 81 ---------LGSKDKAVRQQGLEIMEKAIQLARDL----G-IRTIQLA-GYDVYYEEHDEETRRRFREGLKEAVELAARA 145 (279)
T ss_pred ---------CCCcCHHHHHHHHHHHHHHHHHHHHh----C-CCEEEec-CcccccCcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 11235555666666666677666655 3 4555442 1111110001 11234567777788888
Q ss_pred CCCc
Q psy12280 303 GIRS 306 (758)
Q Consensus 303 G~~v 306 (758)
|+..
T Consensus 146 Gv~l 149 (279)
T TIGR00542 146 QVTL 149 (279)
T ss_pred CCEE
Confidence 8864
No 59
>PRK14706 glycogen branching enzyme; Provisional
Probab=85.47 E-value=10 Score=45.85 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=34.9
Q ss_pred HHHHHHcCCCEEEEe-cc-------cCcCCC--CCCeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 155 LRKLRAMGANTVETY-IA-------WNLHEP--LKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 155 L~k~Ka~GlNtV~tY-v~-------Wn~HEP--~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
+.-+|++|+|+|+.- |. |.+.-- ..=.=.|.. ..||.+|++.|+++||.|||-.
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~---~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGT---PEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCC---HHHHHHHHHHHHHCCCEEEEEe
Confidence 467999999999962 21 222100 000001222 3799999999999999999863
No 60
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=85.38 E-value=1.1 Score=50.22 Aligned_cols=70 Identities=23% Similarity=0.206 Sum_probs=48.5
Q ss_pred EEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCcc
Q psy12280 137 LSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYI 215 (758)
Q Consensus 137 ~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYI 215 (758)
+|-|+.+...+.+....-|++|+++|+..|-| ++|.|+...=+. ...+..++++|+++||.|++-..|=+
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~-----~~~~~~l~~~a~~~~~~v~~Disp~~ 71 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY-----LERLKELLKLAKELGMEVIADISPKV 71 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H-----HHHHHHHHHHHHHCT-EEEEEE-CCH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH-----HHHHHHHHHHHHHCCCEEEEECCHHH
Confidence 46677777778899999999999999999999 999998532222 25688899999999999999886644
No 61
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=84.66 E-value=13 Score=41.46 Aligned_cols=136 Identities=15% Similarity=0.204 Sum_probs=80.9
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHH---HHCCceEEecCCCccccccCCCCC
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIA---QEEDLFVIIRPGPYICAEWDFGGM 224 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la---~e~GL~VIlRpGPYIcAEw~~GGl 224 (758)
++..+..++.+|+.|++.-..|-.|. . |. +=|.+-++.. .+.+|...|+ |.+.--
T Consensus 57 p~v~~~Q~~lA~~~GI~gF~~~~Ywf-~----------gk---~lLe~p~~~~l~~~~~d~pFcl~--------WAN~~w 114 (345)
T PF14307_consen 57 PEVMEKQAELAKEYGIDGFCFYHYWF-N----------GK---RLLEKPLENLLASKEPDFPFCLC--------WANENW 114 (345)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeeec-C----------Cc---hHHHHHHHHHHhcCCCCCcEEEE--------ECCChh
Confidence 78899999999999999999988886 2 21 2233333332 3456655554 433210
Q ss_pred -CcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhc--cccccCCCCEEEeccccccccCCCCcchHHHHHHHHHHHHh
Q psy12280 225 -PSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEP--LQFIDGQGPIIMLGVENELAVLGPNVADKNYMRELVAMLRS 301 (758)
Q Consensus 225 -P~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~--~~~~nG~GpIImvQIENEyg~~~~y~~d~~Y~~~L~~~~~~ 301 (758)
=.|-.....+.+-...+. .+..++.++.|++.++. +..-+| .||+++=--.+ ..+-++.++.+++.+++
T Consensus 115 ~~~w~g~~~~~l~~q~y~~-~~d~~~~~~~l~~~F~D~rYikVdG-KPv~~Iy~p~~------~pd~~~~~~~wr~~a~~ 186 (345)
T PF14307_consen 115 TRRWDGRNNEILIEQKYSG-EDDWKEHFRYLLPYFKDPRYIKVDG-KPVFLIYRPGD------IPDIKEMIERWREEAKE 186 (345)
T ss_pred hhccCCCCccccccccCCc-hhHHHHHHHHHHHHhCCCCceeECC-EEEEEEECccc------ccCHHHHHHHHHHHHHH
Confidence 123333222222111110 01234455667777765 344578 89998743322 23467889999999999
Q ss_pred cCCCcceEEcCC
Q psy12280 302 NGIRSPLFTADD 313 (758)
Q Consensus 302 ~G~~vpl~T~dg 313 (758)
+|+..+.+....
T Consensus 187 ~G~~giyii~~~ 198 (345)
T PF14307_consen 187 AGLPGIYIIAVQ 198 (345)
T ss_pred cCCCceEEEEEe
Confidence 999977665544
No 62
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=84.65 E-value=1.4 Score=46.07 Aligned_cols=60 Identities=18% Similarity=0.265 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCEEEEecccCcCCCCC--CeeeeeCCCc----cccHHHHHHHHHHCCceEEecC
Q psy12280 152 RDRLRKLRAMGANTVETYIAWNLHEPLK--DVYEFGDNNK----DIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 152 ~drL~k~Ka~GlNtV~tYv~Wn~HEP~~--G~fdF~g~~~----~~DL~~Fl~la~e~GL~VIlRp 211 (758)
.++|.-+|++|+|+|..-=++...+..- ..-||.-..+ ..||.++++.|+++||.||+-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 4678899999999999864444321111 1234421111 5799999999999999999764
No 63
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=84.53 E-value=1.3 Score=51.35 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=44.8
Q ss_pred ecCCCCC----hhhHH---HHHHHHHHcCCCEEEEe-cccCc-----CCCCC-Ceeeee-----C--CCc---cccHHHH
Q psy12280 141 IHYFRVR----PEYWR---DRLRKLRAMGANTVETY-IAWNL-----HEPLK-DVYEFG-----D--NNK---DIDFVKF 196 (758)
Q Consensus 141 ~Hy~R~p----~e~W~---drL~k~Ka~GlNtV~tY-v~Wn~-----HEP~~-G~fdF~-----g--~~~---~~DL~~F 196 (758)
+|.|-++ .+.|. ++|.-+|++|+++|-+- ++-+. |--.+ .-|||. | +++ ..||.++
T Consensus 7 ~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~L 86 (479)
T PRK09441 7 MQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNA 86 (479)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHH
Confidence 3444444 35564 67788899999999875 33221 22222 112221 1 111 4899999
Q ss_pred HHHHHHCCceEEecC
Q psy12280 197 IKIAQEEDLFVIIRP 211 (758)
Q Consensus 197 l~la~e~GL~VIlRp 211 (758)
++.|++.||+||+-.
T Consensus 87 i~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 87 IDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHCCCEEEEEE
Confidence 999999999999874
No 64
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=82.22 E-value=2.2 Score=51.21 Aligned_cols=59 Identities=20% Similarity=0.343 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHcCCCEEEEe-cc-------cCcCCCCCCeeeeeCC---CccccHHHHHHHHHHCCceEEec
Q psy12280 148 PEYWRDRLRKLRAMGANTVETY-IA-------WNLHEPLKDVYEFGDN---NKDIDFVKFIKIAQEEDLFVIIR 210 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tY-v~-------Wn~HEP~~G~fdF~g~---~~~~DL~~Fl~la~e~GL~VIlR 210 (758)
.+.=.+.|.-+|+||+++|+.- |. |.+- |+.-|.-. ++.-||.+|||.|+++||-|||-
T Consensus 164 ~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq----~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 164 FELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQ----GTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCC----cceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 5556778999999999999972 11 3221 12212111 11589999999999999999986
No 65
>PRK12568 glycogen branching enzyme; Provisional
Probab=81.50 E-value=18 Score=44.42 Aligned_cols=55 Identities=18% Similarity=0.414 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCCEEEEe-cc-------cCcCCCCCCee----eeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 152 RDRLRKLRAMGANTVETY-IA-------WNLHEPLKDVY----EFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 152 ~drL~k~Ka~GlNtV~tY-v~-------Wn~HEP~~G~f----dF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
++.|.-+|++|+|+|+.- |+ |.+.- -|-| .|... .|+.+|++.|+++||.|||-.
T Consensus 273 ~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~--~~~~a~~~~~G~~---~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 273 EQLIPYVQQLGFTHIELLPITEHPFGGSWGYQP--LGLYAPTARHGSP---DGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred HHHHHHHHHcCCCEEEECccccCCCCCCCCCCC--CcCCccCcccCCH---HHHHHHHHHHHHCCCEEEEEe
Confidence 344688899999999863 21 32210 0111 23333 799999999999999999874
No 66
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=81.46 E-value=6.2 Score=40.60 Aligned_cols=152 Identities=17% Similarity=0.115 Sum_probs=78.3
Q ss_pred EEEEEeecCCCCChhhHHHHHHHHH-HcCCCEEEEecccCcCCCCCCeeeeeCCCccccH-HHHHHHHHHCCceEEecCC
Q psy12280 135 RILSGSIHYFRVRPEYWRDRLRKLR-AMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDF-VKFIKIAQEEDLFVIIRPG 212 (758)
Q Consensus 135 ~i~sG~~Hy~R~p~e~W~drL~k~K-a~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL-~~Fl~la~e~GL~VIlRpG 212 (758)
++..+.+.+.. ++.+.+.|++.. +.|+-.|..+-...- ++... ..+ ..++++|+|+|+-|++-+|
T Consensus 72 ~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~Gv~l~~~~~~-------~~~~~----~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 72 FIGFAAIPPPD--PEDAVEELERALQELGFRGVKLHPDLGG-------FDPDD----PRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp EEEEEEETTTS--HHHHHHHHHHHHHTTTESEEEEESSETT-------CCTTS----GHCHHHHHHHHHHHT-EEEEEES
T ss_pred EEEEEEecCCC--chhHHHHHHHhccccceeeeEecCCCCc-------ccccc----HHHHHHHHHHHHhhccceeeecc
Confidence 44455565544 556666666665 999999998653221 22222 233 4899999999999999976
Q ss_pred ---------CccccccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCC
Q psy12280 213 ---------PYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLG 283 (758)
Q Consensus 213 ---------PYIcAEw~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~ 283 (758)
.+++-+ ...++ +.+-|++++--.+-.+. ..|+..++..++++ .+| .+.+--=++.
T Consensus 139 ~~~~~~~~~~~~~~~-~~~~~---~~~~P~l~ii~~H~G~~---~~~~~~~~~l~~~~------~nv-y~d~s~~~~~-- 202 (273)
T PF04909_consen 139 MTGFPDAPSDPADPE-ELEEL---LERFPDLRIILAHLGGP---FPWWEEALRLLDRF------PNV-YVDLSGIPPF-- 202 (273)
T ss_dssp HTHHHHHHHHHHHHH-HHTTH---HHHSTTSEEEESGGGTT---HHHHHHHHHHHHHH------TTE-EEECHSHHSS--
T ss_pred ccchhhhhHHHHHHH-HHHHH---HHHhcCCeEEEecCccc---chhHHHHHHHHHhC------Ccc-cccccccccc--
Confidence 111100 00010 12236665544444333 45555555555543 122 1111000000
Q ss_pred CCcch-HHHHHHHHHHHHhcCCCcceEEcCCCC
Q psy12280 284 PNVAD-KNYMRELVAMLRSNGIRSPLFTADDPS 315 (758)
Q Consensus 284 ~y~~d-~~Y~~~L~~~~~~~G~~vpl~T~dg~~ 315 (758)
.+... ......+.++++..|.++.+|.||-+.
T Consensus 203 ~~~~~~~~~~~~l~~~~~~~g~drilfGSD~P~ 235 (273)
T PF04909_consen 203 WYFWPPSFDRPFLRRAVDEFGPDRILFGSDYPH 235 (273)
T ss_dssp EEEETTHHCHHHHHHHHHHHTGGGEEEE--TTS
T ss_pred cccCcccccHHHHHHHHHHhCCceEEecCCCCC
Confidence 01011 112466777777889999999999764
No 67
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=80.45 E-value=3.6 Score=40.59 Aligned_cols=124 Identities=16% Similarity=0.119 Sum_probs=73.4
Q ss_pred HHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcccccCCCc
Q psy12280 155 LRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGI 234 (758)
Q Consensus 155 L~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~WL~~~p~i 234 (758)
|+.++++|+..|+....+....... . .+++.+.++++++||.|..--.+. .+.. +..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~---~~~~~~~~~~~~~gl~i~~~~~~~---~~~~----------~~~ 57 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------D---DEAEELRRLLEDYGLKIASLHPPT---NFWS----------PDE 57 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------H---HHHHHHHHHHHHTTCEEEEEEEEE---SSSC----------TGT
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------h---HHHHHHHHHHHHcCCeEEEEeccc---cccc----------ccc
Confidence 6789999999999965533222111 1 568999999999999966322111 1110 011
Q ss_pred eeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccc--cccccCC---CCcchHHHHHHHHHHHHhcCCCcc
Q psy12280 235 KLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVE--NELAVLG---PNVADKNYMRELVAMLRSNGIRSP 307 (758)
Q Consensus 235 ~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIE--NEyg~~~---~y~~d~~Y~~~L~~~~~~~G~~vp 307 (758)
..++..+. ++...+.+++.+...+.+ | ...|.+... +...... .+..-.+.++.|.+.++++|+..-
T Consensus 58 ~~~~~~~~-r~~~~~~~~~~i~~a~~l----g-~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~ 129 (213)
T PF01261_consen 58 ENGSANDE-REEALEYLKKAIDLAKRL----G-AKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIA 129 (213)
T ss_dssp TSTTSSSH-HHHHHHHHHHHHHHHHHH----T-BSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred cccCcchh-hHHHHHHHHHHHHHHHHh----C-CCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEE
Confidence 12334444 777777777888777776 3 566666654 2222200 011234567888888888897743
No 68
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.94 E-value=24 Score=37.21 Aligned_cols=133 Identities=15% Similarity=0.125 Sum_probs=75.4
Q ss_pred CCCh-hhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEE-ecCCCccccccCCC
Q psy12280 145 RVRP-EYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVI-IRPGPYICAEWDFG 222 (758)
Q Consensus 145 R~p~-e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VI-lRpGPYIcAEw~~G 222 (758)
.+|+ -.|++.++.++++|+..|+..+. ..|+ .....+|+. .++..+.++++++||.|. +.++
T Consensus 11 ~~~~~~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~~----~~~~~l~~~l~~~Gl~i~~~~~~---------- 74 (284)
T PRK13210 11 ALPKHLSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWSK----EERLSLVKAIYETGVRIPSMCLS---------- 74 (284)
T ss_pred hcCCCCCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCCH----HHHHHHHHHHHHcCCCceEEecc----------
Confidence 3454 47999999999999999999532 1121 011234442 578999999999999876 2221
Q ss_pred CCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCC---CCcchHHHHHHHHHHH
Q psy12280 223 GMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLG---PNVADKNYMRELVAML 299 (758)
Q Consensus 223 GlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~---~y~~d~~Y~~~L~~~~ 299 (758)
+.-.+ .+.+.++.-++...+.+++.+...+.+- .+.|.+--...+.... .+..-.+.++.|.+++
T Consensus 75 ~~~~~-------~~~~~d~~~r~~~~~~~~~~i~~a~~lG-----~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a 142 (284)
T PRK13210 75 GHRRF-------PFGSRDPATRERALEIMKKAIRLAQDLG-----IRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQA 142 (284)
T ss_pred cccCc-------CCCCCCHHHHHHHHHHHHHHHHHHHHhC-----CCEEEECCcccccccccHHHHHHHHHHHHHHHHHH
Confidence 11000 0223455555555556666666666553 3554432111110000 0111235677888888
Q ss_pred HhcCCC
Q psy12280 300 RSNGIR 305 (758)
Q Consensus 300 ~~~G~~ 305 (758)
+++|+.
T Consensus 143 ~~~gv~ 148 (284)
T PRK13210 143 AAAQVM 148 (284)
T ss_pred HHhCCE
Confidence 888886
No 69
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=79.53 E-value=3.5 Score=50.60 Aligned_cols=61 Identities=25% Similarity=0.307 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHcCCCEEEEe-c-------ccCcCCCC--CCeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 148 PEYWRDRLRKLRAMGANTVETY-I-------AWNLHEPL--KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tY-v-------~Wn~HEP~--~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
.+.|++.|..+|++|+|+|..- | .|.++-.. .=.-.|+.. .||.+|++.|+++||.|||-.
T Consensus 250 ~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp---~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 250 REFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTP---EDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCH---HHHHHHHHHHHHCCCEEEEEe
Confidence 5668999999999999999864 1 13322100 000133333 799999999999999999874
No 70
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=78.50 E-value=3.4 Score=48.81 Aligned_cols=54 Identities=24% Similarity=0.450 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCCEEEEe-cc-------cCcC-----CCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 152 RDRLRKLRAMGANTVETY-IA-------WNLH-----EPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 152 ~drL~k~Ka~GlNtV~tY-v~-------Wn~H-----EP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
.++|.-+|++|+|+|..- |+ |.++ .+.+ .|++ ..||.+|++.|+++||.|||-.
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~---~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGG---PDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCC---HHHHHHHHHHHHHCCCEEEEEE
Confidence 457899999999999863 21 2211 1111 2333 3789999999999999999873
No 71
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=78.19 E-value=1.6 Score=50.50 Aligned_cols=173 Identities=17% Similarity=0.185 Sum_probs=111.0
Q ss_pred ceEEECCEEeEEEEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcC-CCCCCe--eeeeCCCccccHHHHHHHHH
Q psy12280 125 NTFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLH-EPLKDV--YEFGDNNKDIDFVKFIKIAQ 201 (758)
Q Consensus 125 ~~f~lnGkp~~i~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~H-EP~~G~--fdF~g~~~~~DL~~Fl~la~ 201 (758)
+.|.|+++++..++..--+.++--++-+++|+-|+.+|++++|.. -+- |+-.++ +.+.+ +...-++.|++.|.
T Consensus 2 K~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~-s~~~y~~~fla~a~ 77 (587)
T COG3934 2 KVFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAG-SNVWYAAWFLAPAG 77 (587)
T ss_pred ceEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceeccc-ccHHHHHHHhhhcc
Confidence 458899998888887777778888888999999999999999994 344 553222 11211 00256788999999
Q ss_pred HCCceEEecCCCccccccCCCCCC---ccccc-CCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEecccc
Q psy12280 202 EEDLFVIIRPGPYICAEWDFGGMP---SYLLR-EPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVEN 277 (758)
Q Consensus 202 e~GL~VIlRpGPYIcAEw~~GGlP---~WL~~-~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIEN 277 (758)
+++|.|+++- |.+==.+||.= .|... .|+-.. .|+.++...++|..-|++-.+ .. +.|..|-+-|
T Consensus 78 ~l~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk-----~~-ptI~gw~l~N 146 (587)
T COG3934 78 YLDLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYK-----LD-PTIAGWALRN 146 (587)
T ss_pred cCcceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhc-----cC-hHHHHHHhcC
Confidence 9999998874 33322456642 23321 132111 356666666777766666332 33 7899999999
Q ss_pred ccccCCCCcchHHHHHHHHHHH---HhcCCCcceEEcCC
Q psy12280 278 ELAVLGPNVADKNYMRELVAML---RSNGIRSPLFTADD 313 (758)
Q Consensus 278 Eyg~~~~y~~d~~Y~~~L~~~~---~~~G~~vpl~T~dg 313 (758)
| --.+.-..+..+++|++++. +..+..-.+-..|.
T Consensus 147 e-~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~ 184 (587)
T COG3934 147 E-PLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDP 184 (587)
T ss_pred C-ccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCc
Confidence 9 21111134677899998885 45566533333343
No 72
>PRK12677 xylose isomerase; Provisional
Probab=78.12 E-value=39 Score=38.43 Aligned_cols=96 Identities=20% Similarity=0.149 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEE-ecCCCccccccCCCCCCc
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVI-IRPGPYICAEWDFGGMPS 226 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VI-lRpGPYIcAEw~~GGlP~ 226 (758)
+-.+++++++++++|+..|+.. .+..--|+.+-......+.++.+++++.||.|. +-|.-|-+..+..|+
T Consensus 30 ~~~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~--- 100 (384)
T PRK12677 30 PLDPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGA--- 100 (384)
T ss_pred CCCHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCc---
Confidence 3358899999999999999883 111101111100001348899999999999977 444222122233333
Q ss_pred ccccCCCceeccCCHhHHHHHHHHHHHHHHHhhcc
Q psy12280 227 YLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPL 261 (758)
Q Consensus 227 WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~ 261 (758)
+-+.|+.-++...+.+.+.+..-+.+
T Consensus 101 ---------lts~d~~~R~~Ai~~~~r~IdlA~eL 126 (384)
T PRK12677 101 ---------FTSNDRDVRRYALRKVLRNIDLAAEL 126 (384)
T ss_pred ---------CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33456766776666666666666554
No 73
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=77.70 E-value=17 Score=38.47 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=70.8
Q ss_pred cCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHC-CceEEecCCCccccccC
Q psy12280 142 HYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEE-DLFVIIRPGPYICAEWD 220 (758)
Q Consensus 142 Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~-GL~VIlRpGPYIcAEw~ 220 (758)
|-..++ .-|++.|+.+|++|+..|+.-+-....... ..... .+++++.++++++ |+.+.+- +||..
T Consensus 4 ~~~~~~-~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~i~~~-~~~~~---- 70 (279)
T cd00019 4 HVSAAG-FGLENALKRAKEIGFDTVAMFLGNPRSWLS----RPLKK---ERAEKFKAIAEEGPSICLSVH-APYLI---- 70 (279)
T ss_pred cccccc-ccHHHHHHHHHHcCCCEEEEEcCCCCccCC----CCCCH---HHHHHHHHHHHHcCCCcEEEE-cCcee----
Confidence 334455 789999999999999999985432211110 01122 6789999999999 7666543 23321
Q ss_pred CCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccC-C-CCcchHHHHHHHHHH
Q psy12280 221 FGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVL-G-PNVADKNYMRELVAM 298 (758)
Q Consensus 221 ~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~-~-~y~~d~~Y~~~L~~~ 298 (758)
.+.+.++.-++..-+.+++.++..+.+- -+.|.+.....-+.. . .+..-.+-++.|.+.
T Consensus 71 --------------~~~~~~~~~r~~~~~~~~~~i~~A~~lG-----~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~ 131 (279)
T cd00019 71 --------------NLASPDKEKREKSIERLKDEIERCEELG-----IRLLVFHPGSYLGQSKEEGLKRVIEALNELIDK 131 (279)
T ss_pred --------------ccCCCCHHHHHHHHHHHHHHHHHHHHcC-----CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 0122344444444444555555555542 455555554332110 0 011112334555555
Q ss_pred HHhcCCC
Q psy12280 299 LRSNGIR 305 (758)
Q Consensus 299 ~~~~G~~ 305 (758)
+++.|+.
T Consensus 132 a~~~gi~ 138 (279)
T cd00019 132 AETKGVV 138 (279)
T ss_pred ccCCCCE
Confidence 5566775
No 74
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=77.49 E-value=45 Score=35.08 Aligned_cols=129 Identities=12% Similarity=0.130 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcc
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSY 227 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~W 227 (758)
...|++.|+.++++|+..|+...-. .|+-.+ +++- .+++++-++++++||.|.. .+|. | +++|..
T Consensus 12 ~~~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~~----~~~~~l~~~~~~~gl~v~s-~~~~-~-----~~~~~~ 76 (275)
T PRK09856 12 RLPIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLKA----GGIKQIKALAQTYQMPIIG-YTPE-T-----NGYPYN 76 (275)
T ss_pred eCCHHHHHHHHHHcCCCEEEEccCC-cccccc---ccCc----hHHHHHHHHHHHcCCeEEE-ecCc-c-----cCcCcc
Confidence 3459999999999999999983110 011011 2221 5788899999999999863 2221 1 233333
Q ss_pred cccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCCC----CcchHHHHHHHHHHHHhcC
Q psy12280 228 LLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGP----NVADKNYMRELVAMLRSNG 303 (758)
Q Consensus 228 L~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~~----y~~d~~Y~~~L~~~~~~~G 303 (758)
+.. .++.-+++..+.+++.+...+.+ | .+.|.+-.... +.... +..-.+.++.|.+.++++|
T Consensus 77 ~~~--------~~~~~r~~~~~~~~~~i~~a~~l----G-a~~i~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~a~~~g 142 (275)
T PRK09856 77 MML--------GDEHMRRESLDMIKLAMDMAKEM----N-AGYTLISAAHA-GYLTPPNVIWGRLAENLSELCEYAENIG 142 (275)
T ss_pred ccC--------CCHHHHHHHHHHHHHHHHHHHHh----C-CCEEEEcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 221 23333444444444444444443 2 34444422211 11000 1122346888888888888
Q ss_pred CC
Q psy12280 304 IR 305 (758)
Q Consensus 304 ~~ 305 (758)
+.
T Consensus 143 v~ 144 (275)
T PRK09856 143 MD 144 (275)
T ss_pred CE
Confidence 86
No 75
>PRK10785 maltodextrin glucosidase; Provisional
Probab=77.16 E-value=46 Score=39.93 Aligned_cols=147 Identities=14% Similarity=0.218 Sum_probs=78.5
Q ss_pred HHHHHHHHHHcCCCEEEEe-cccC--cCCCCCCee-----eeeCCCccccHHHHHHHHHHCCceEEecCCCcccc-----
Q psy12280 151 WRDRLRKLRAMGANTVETY-IAWN--LHEPLKDVY-----EFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICA----- 217 (758)
Q Consensus 151 W~drL~k~Ka~GlNtV~tY-v~Wn--~HEP~~G~f-----dF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcA----- 217 (758)
-.++|.-+|++|+|+|-.= |+=+ .|---..-| .|.+ ..||.+|++.|++.||.|||-.=+==|+
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt---~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~ 257 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGG---DAALLRLRHATQQRGMRLVLDGVFNHTGDSHPW 257 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCC---HHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHH
Confidence 3678899999999999874 4321 111111111 2333 3799999999999999999742110011
Q ss_pred --------------------cc---C-CCCCCcccccC--CCceeccCCHhHHHHHHHHHHHHHHH-hhc-cccccCCCC
Q psy12280 218 --------------------EW---D-FGGMPSYLLRE--PGIKLRSMDPKYLNRVRQYFNNLIPL-LEP-LQFIDGQGP 269 (758)
Q Consensus 218 --------------------Ew---~-~GGlP~WL~~~--p~i~~Rt~dp~y~~~v~~w~~~l~~~-l~~-~~~~nG~Gp 269 (758)
+| . .|....|..-. | .+.+.+|..++++.++.+.++.. ++. +-+ .
T Consensus 258 f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lP--dLN~~np~v~~~l~~~~~~v~~~Wl~~~~gi-D---- 330 (598)
T PRK10785 258 FDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLP--KLDFQSEEVVNEIYRGEDSIVRHWLKAPYNI-D---- 330 (598)
T ss_pred HHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCc--cccCCCHHHHHHHHhhhhHHHHHhhcCCCCC-c----
Confidence 11 0 12222333211 2 35667887777766554444443 221 111 1
Q ss_pred EEEeccc--cccccCCCCcchHHHHHHHHHHHHhcCCCcceE
Q psy12280 270 IIMLGVE--NELAVLGPNVADKNYMRELVAMLRSNGIRSPLF 309 (758)
Q Consensus 270 IImvQIE--NEyg~~~~y~~d~~Y~~~L~~~~~~~G~~vpl~ 309 (758)
+|-++ +|.+.........++++.+++.+++...+..++
T Consensus 331 --G~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~li 370 (598)
T PRK10785 331 --GWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENPEAYVL 370 (598)
T ss_pred --EEEEecHhHhccccCccccHHHHHHHHHHHHhhCCCeEEE
Confidence 12211 333320001124678899999998877665544
No 76
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=76.95 E-value=3 Score=49.21 Aligned_cols=58 Identities=16% Similarity=0.308 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHcCCCEEEEe-cccCcCCCCCCee---e-------eeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 149 EYWRDRLRKLRAMGANTVETY-IAWNLHEPLKDVY---E-------FGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 149 e~W~drL~k~Ka~GlNtV~tY-v~Wn~HEP~~G~f---d-------F~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
.-+.++|.-+|++|+|+|-+- ++-+- .. ..-| | |.. ..||.+|++.|+++||.||+-.
T Consensus 27 ~gi~~~l~yl~~lG~~~i~l~Pi~~~~-~~-~~gY~~~d~~~id~~~Gt---~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 27 RGIIEKLDYLKKLGVDYIWLNPFYVSP-QK-DNGYDVSDYYAINPLFGT---MADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHHhHHHHHHcCCCEEEECCcccCC-CC-CCCCCccccCccCcccCC---HHHHHHHHHHHHHCCCEEEEEE
Confidence 457788999999999999874 22111 00 0112 2 333 3799999999999999999874
No 77
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=76.33 E-value=35 Score=38.80 Aligned_cols=93 Identities=19% Similarity=0.128 Sum_probs=54.5
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEe----cccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEe-cCCCccccccCC
Q psy12280 147 RPEYWRDRLRKLRAMGANTVETY----IAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVII-RPGPYICAEWDF 221 (758)
Q Consensus 147 p~e~W~drL~k~Ka~GlNtV~tY----v~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIl-RpGPYIcAEw~~ 221 (758)
|+....+++++++++|+..|+.. ++|..-..+. +.+++++-++++++||.|.. -++-+-...|..
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~----------~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~ 99 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER----------DQIVRRFKKALDETGLKVPMVTTNLFSHPVFKD 99 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH----------HHHHHHHHHHHHHhCCeEEEeeccccCCccccC
Confidence 44567899999999999999974 2222111100 14578899999999999663 332111122333
Q ss_pred CCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhcc
Q psy12280 222 GGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPL 261 (758)
Q Consensus 222 GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~ 261 (758)
|| +-+.|+..+++.-+.+++.+..-+.+
T Consensus 100 g~------------las~d~~vR~~ai~~~kraId~A~eL 127 (382)
T TIGR02631 100 GG------------FTSNDRSVRRYALRKVLRNMDLGAEL 127 (382)
T ss_pred CC------------CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 32 23346666655555555555555544
No 78
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=75.73 E-value=47 Score=34.85 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=38.5
Q ss_pred eecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEe
Q psy12280 140 SIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVII 209 (758)
Q Consensus 140 ~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIl 209 (758)
++.|-+.| ++++|++++++|+..|+.. . |. . .|++.+.++++++||.|..
T Consensus 9 ~~~~~~~~---l~~~l~~~a~~Gf~~VEl~---~---~~--------~---~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 9 SMLFGEYD---FLARFEKAAQCGFRGVEFM---F---PY--------D---YDIEELKQVLASNKLEHTL 58 (258)
T ss_pred ehhccCCC---HHHHHHHHHHhCCCEEEEc---C---CC--------C---CCHHHHHHHHHHcCCcEEE
Confidence 34454444 7889999999999999992 1 21 1 5789999999999999864
No 79
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=74.87 E-value=3.6 Score=43.97 Aligned_cols=57 Identities=16% Similarity=0.286 Sum_probs=42.1
Q ss_pred cCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCC
Q psy12280 142 HYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPG 212 (758)
Q Consensus 142 Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpG 212 (758)
|++.. +...++-|+.+|++||++|++ ..|..+.+- .+..++|+.|+++||.|+-..|
T Consensus 78 E~a~~-q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~~----~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 78 EVAYQ-QGKFDEYLEECKELGFDAIEI---------SDGTIDLPE----EERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp HHHHH-TT-HHHHHHHHHHCT-SEEEE-----------SSS---H----HHHHHHHHHHCCTTSEEEEEES
T ss_pred HHHHh-cChHHHHHHHHHHcCCCEEEe---------cCCceeCCH----HHHHHHHHHHHHCCCEEeeccc
Confidence 44434 778899999999999999999 455555554 5778999999999999999987
No 80
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=74.30 E-value=17 Score=42.25 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=63.7
Q ss_pred EEeecCCCCChhhHHHHHHHHH-HcCCCEEEEecccCcC-C--------CCCCe--eeeeCCCccccHHHHHHHHHHCCc
Q psy12280 138 SGSIHYFRVRPEYWRDRLRKLR-AMGANTVETYIAWNLH-E--------PLKDV--YEFGDNNKDIDFVKFIKIAQEEDL 205 (758)
Q Consensus 138 sG~~Hy~R~p~e~W~drL~k~K-a~GlNtV~tYv~Wn~H-E--------P~~G~--fdF~g~~~~~DL~~Fl~la~e~GL 205 (758)
-|+-|..-.-++.|+..|+.++ +.||..||.. ++- . ...|. |||+. |+.++|...++||
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h---~l~~ddm~~~~~~~~~~~~~Ynf~~------lD~i~D~l~~~g~ 98 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRFH---GLFSDDMMVYSESDEDGIPPYNFTY------LDQILDFLLENGL 98 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEES----TTSTTTT-EEEEETTEEEEE--HH------HHHHHHHHHHCT-
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEEE---eeccCchhhccccccCCCCcCChHH------HHHHHHHHHHcCC
Confidence 3444555566889999999996 7899999983 322 1 12232 88975 7999999999999
Q ss_pred eEEecCCCccccccCCCCCCcccccCCCceecc----CCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEecccccccc
Q psy12280 206 FVIIRPGPYICAEWDFGGMPSYLLREPGIKLRS----MDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAV 281 (758)
Q Consensus 206 ~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~~Rt----~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~ 281 (758)
.-+++.|- .|.++.......... .-|.-.+++..+.++++.++..+.-.+. =.-=.+.|=||-..
T Consensus 99 ~P~vel~f----------~p~~~~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~e-v~~W~fEiWNEPd~ 167 (486)
T PF01229_consen 99 KPFVELGF----------MPMALASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEE-VSTWYFEIWNEPDL 167 (486)
T ss_dssp EEEEEE-S----------B-GGGBSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHH-HTTSEEEESS-TTS
T ss_pred EEEEEEEe----------chhhhcCCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCcc-ccceeEEeCcCCCc
Confidence 98777652 344444332211111 1222345555555555555554321100 00014577888654
No 81
>PRK12313 glycogen branching enzyme; Provisional
Probab=73.90 E-value=5 Score=48.22 Aligned_cols=55 Identities=18% Similarity=0.362 Sum_probs=36.6
Q ss_pred HHHHHHHcCCCEEEEe-cc-------cCcCCC--CCCeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 154 RLRKLRAMGANTVETY-IA-------WNLHEP--LKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 154 rL~k~Ka~GlNtV~tY-v~-------Wn~HEP--~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
.|.-+|++|+|+|..- |+ |.+.-- ..=.-.|.+. .||.+|++.|+++||.|||-.
T Consensus 176 ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~---~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 176 LIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTP---EDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCH---HHHHHHHHHHHHCCCEEEEEE
Confidence 3589999999999963 32 211100 0000034444 799999999999999999873
No 82
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=73.89 E-value=52 Score=36.00 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecc----cCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCC
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIA----WNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGG 223 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~----Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GG 223 (758)
.++-.+.++.|...|+|.+..|+- +.-+ |+-+. -.|.=+..|++++++.|+++|+.||-..=-.-+.|+- ..
T Consensus 16 ~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~-p~~~~--~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~-l~ 91 (301)
T cd06565 16 VSYLKKLLRLLALLGANGLLLYYEDTFPYEGE-PEVGR--MRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEFI-LK 91 (301)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecceecCCC-ccccc--CCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHHH-Hh
Confidence 578899999999999999998853 2211 11110 0111115799999999999999999553211122220 00
Q ss_pred CCccc--ccC--CCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccC--CCC-------cch--
Q psy12280 224 MPSYL--LRE--PGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVL--GPN-------VAD-- 288 (758)
Q Consensus 224 lP~WL--~~~--p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~--~~y-------~~d-- 288 (758)
.|... ... +.-.+...+|.-.+.+++.++++++......+.=| | -|+-.. +++ +..
T Consensus 92 ~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~~~HIG-~--------DE~~~~g~~~~~~~~~~~~~~~l 162 (301)
T cd06565 92 HPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHPSKYIHIG-M--------DEAYDLGRGRSLRKHGNLGRGEL 162 (301)
T ss_pred CcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCCCCeEEEC-C--------CcccccCCCHHHHHhcCCCHHHH
Confidence 11110 000 11123445666666666666666655432222222 1 122110 001 111
Q ss_pred -HHHHHHHHHHHHhcCCCcceEEcCC
Q psy12280 289 -KNYMRELVAMLRSNGIRSPLFTADD 313 (758)
Q Consensus 289 -~~Y~~~L~~~~~~~G~~vpl~T~dg 313 (758)
..|++.+.+.++++|.+ |++=.|.
T Consensus 163 ~~~~~~~v~~~v~~~g~~-~~~W~D~ 187 (301)
T cd06565 163 YLEHLKKVLKIIKKRGPK-PMMWDDM 187 (301)
T ss_pred HHHHHHHHHHHHHHcCCE-EEEEhHH
Confidence 35677777888899985 5554443
No 83
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=72.74 E-value=31 Score=36.49 Aligned_cols=130 Identities=16% Similarity=0.164 Sum_probs=72.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEE-ecCCCccccccCCCCCCc
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVI-IRPGPYICAEWDFGGMPS 226 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VI-lRpGPYIcAEw~~GGlP~ 226 (758)
..-|++.++.++++|+..|+..+. ..|+ ....++++. .+++++.++++++||.|. +.++... .++
T Consensus 20 ~~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~~----~~~~~l~~~l~~~gl~i~~~~~~~~~-------~~~- 85 (283)
T PRK13209 20 GECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWSR----EQRLALVNALVETGFRVNSMCLSAHR-------RFP- 85 (283)
T ss_pred CCCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCCH----HHHHHHHHHHHHcCCceeEEeccccc-------ccC-
Confidence 346999999999999999999432 1111 011123332 468899999999999875 3321100 000
Q ss_pred ccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCCC----CcchHHHHHHHHHHHHhc
Q psy12280 227 YLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGP----NVADKNYMRELVAMLRSN 302 (758)
Q Consensus 227 WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~~----y~~d~~Y~~~L~~~~~~~ 302 (758)
+-+.++.-++...+.+++.+...+.+ | .+.|.+.- -+.+.... +..-.+.++.|.+.++++
T Consensus 86 ---------~~~~~~~~r~~~~~~~~~~i~~a~~l----G-~~~i~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~ 150 (283)
T PRK13209 86 ---------LGSEDDAVRAQALEIMRKAIQLAQDL----G-IRVIQLAG-YDVYYEQANNETRRRFIDGLKESVELASRA 150 (283)
T ss_pred ---------CCCCCHHHHHHHHHHHHHHHHHHHHc----C-CCEEEECC-ccccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 11235555555566666666666554 3 45554421 01000000 011134577788888888
Q ss_pred CCCc
Q psy12280 303 GIRS 306 (758)
Q Consensus 303 G~~v 306 (758)
|+..
T Consensus 151 GV~i 154 (283)
T PRK13209 151 SVTL 154 (283)
T ss_pred CCEE
Confidence 8763
No 84
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=71.52 E-value=92 Score=32.45 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEe
Q psy12280 150 YWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVII 209 (758)
Q Consensus 150 ~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIl 209 (758)
-+++.+++++++|++.|+...++ + .++..+.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~------------~-----~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY------------D-----WDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc------------c-----CCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999984321 1 4578899999999999774
No 85
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=71.14 E-value=6.9 Score=46.37 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEe-cccCcCCCCC-Ce---eeeeCCCc----cccHHHHHHHHHHCCceEEecC
Q psy12280 149 EYWRDRLRKLRAMGANTVETY-IAWNLHEPLK-DV---YEFGDNNK----DIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 149 e~W~drL~k~Ka~GlNtV~tY-v~Wn~HEP~~-G~---fdF~g~~~----~~DL~~Fl~la~e~GL~VIlRp 211 (758)
+-+.++|.-+|++|+++|-+- ++-+ |.. .- .||..... ..||.++++.|+++||.||+-.
T Consensus 33 ~gi~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 33 RGVTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 346688999999999999874 3211 111 11 22221111 3799999999999999999874
No 86
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.96 E-value=15 Score=42.30 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=76.9
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEe-------------cccCcCCCCCCeeeeeCCCcccc-HHHHHHHHHHCCceEEecC
Q psy12280 146 VRPEYWRDRLRKLRAMGANTVETY-------------IAWNLHEPLKDVYEFGDNNKDID-FVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 146 ~p~e~W~drL~k~Ka~GlNtV~tY-------------v~Wn~HEP~~G~fdF~g~~~~~D-L~~Fl~la~e~GL~VIlRp 211 (758)
..+..-.+.|.+++++|+|||-.= .+|..-. ||++-=+.. .| |...|++|++.||.|+.+.
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g---~DpLa~~I~~AHkr~l~v~aWf 135 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPG---YDPLAFVIAEAHKRGLEVHAWF 135 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCC---CChHHHHHHHHHhcCCeeeech
Confidence 347778899999999999998632 2344332 443322211 34 5667899999999999988
Q ss_pred CCccccccCCCC---CCcccccC-CCce-eccCC-------HhHHHHHHHHHHHHHHHhhccccccCCCCEEEecccccc
Q psy12280 212 GPYICAEWDFGG---MPSYLLRE-PGIK-LRSMD-------PKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENEL 279 (758)
Q Consensus 212 GPYIcAEw~~GG---lP~WL~~~-p~i~-~Rt~d-------p~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEy 279 (758)
=||..|--..-. .|.|+..+ |+.. .|... .+..-+|..|+..++-.+...+ .|=++|.+-=+
T Consensus 136 ~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y------dvDGIQfDd~f 209 (418)
T COG1649 136 NPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY------DVDGIQFDDYF 209 (418)
T ss_pred hhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC------CCCceecceee
Confidence 887766422221 37777765 4432 23331 2356788888888555554432 44466776544
Q ss_pred c
Q psy12280 280 A 280 (758)
Q Consensus 280 g 280 (758)
+
T Consensus 210 y 210 (418)
T COG1649 210 Y 210 (418)
T ss_pred c
Confidence 3
No 87
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=70.15 E-value=1.5e+02 Score=33.14 Aligned_cols=211 Identities=12% Similarity=0.076 Sum_probs=92.7
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEE-------ecccCcCCCCCCeeeeeCCCccccHHH-HHHHHHHCCceEEecCCCcc
Q psy12280 144 FRVRPEYWRDRLRKLRAMGANTVET-------YIAWNLHEPLKDVYEFGDNNKDIDFVK-FIKIAQEEDLFVIIRPGPYI 215 (758)
Q Consensus 144 ~R~p~e~W~drL~k~Ka~GlNtV~t-------Yv~Wn~HEP~~G~fdF~g~~~~~DL~~-Fl~la~e~GL~VIlRpGPYI 215 (758)
....++.|.+ .+|++|+.-|-. +..|...-..-.+-+-.. .+||.+ |.+.|+++||.+.+=-.
T Consensus 89 ~~fD~dqW~~---~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~---krDiv~El~~A~rk~Glk~G~Y~S--- 159 (346)
T PF01120_consen 89 TKFDADQWAK---LAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGP---KRDIVGELADACRKYGLKFGLYYS--- 159 (346)
T ss_dssp TT--HHHHHH---HHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGG---TS-HHHHHHHHHHHTT-EEEEEEE---
T ss_pred ccCCHHHHHH---HHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCC---CCCHHHHHHHHHHHcCCeEEEEec---
Confidence 4556777765 789999985532 233554322212222112 378765 99999999998887322
Q ss_pred ccccCCCCCCcccccCCCceeccCCHhHHHHHH-HHHHHHHHHhhccccccCCCCEEEeccccccccCCCCcchHHHHHH
Q psy12280 216 CAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVR-QYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNVADKNYMRE 294 (758)
Q Consensus 216 cAEw~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~-~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~~y~~d~~Y~~~ 294 (758)
.++|.....+.-...... ......+.+-+.++ .|+.+|.+.+.++. ..+|=+=...... ...--...
T Consensus 160 ~~dw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~-----~d~lWfDg~~~~~------~~~~~~~~ 227 (346)
T PF01120_consen 160 PWDWHHPDYPPDEEGDEN-GPADGPGNWQRYYNEYWLAQLRELLTRYK-----PDILWFDGGWPDP------DEDWDSAE 227 (346)
T ss_dssp SSSCCCTTTTSSCHCHHC-C--HCCHHHHHHHHHHHHHHHHHHHHCST-----ESEEEEESTTSCC------CTHHHHHH
T ss_pred chHhcCcccCCCccCCcc-cccccchhhHhHhhhhhHHHHHHHHhCCC-----cceEEecCCCCcc------ccccCHHH
Confidence 236654333222211100 00112344555555 44444555554442 2333332222111 12222477
Q ss_pred HHHHHHhcCCCcceEEcCCCCCCCCCCCcccceeecccCChHHHHHHhhhcCCCCCceeeec-ccccccccCCCCCCCCC
Q psy12280 295 LVAMLRSNGIRSPLFTADDPSMGDSGSLIEDVLYAANILYAGEELRKLSYMQPNKPLMVMEW-WTGWFDTWAKNRHNTFP 373 (758)
Q Consensus 295 L~~~~~~~G~~vpl~T~dg~~~~~~G~~~~~vl~t~nf~~~~~~f~~~~~~~P~~P~~~sEf-~~GWf~~WG~~~~~~~~ 373 (758)
+.+++++....+.+...-+.. ..+. ..+.+.+.+.... ....|.-...- ..+||= -.......+
T Consensus 228 ~~~~i~~~qp~~ii~~r~~~~--~~~~---~d~~~~E~~~~~~--------~~~~pwE~~~ti~~~W~y--~~~~~~~ks 292 (346)
T PF01120_consen 228 LYNWIRKLQPDVIINNRWGGN--EQGD---GDYNTPERGIPGE--------IQGRPWETCTTIGPSWGY--NTPDEKYKS 292 (346)
T ss_dssp HHHHHHHHSTTSEEECCCSSC--SSCC---BSCCEECTTBTTT--------EEESEEEEEEESSSSSS---CGGGCGS--
T ss_pred HHHHHHHhCCeEEEecccCCC--CCcc---ccccchhccCCCC--------CCCCCccccCcCCCCCcc--cCCCCCcCC
Confidence 778888887765544322111 1100 0111222111100 11223322222 245552 111345578
Q ss_pred hHHHHHHHHHHHhCCce
Q psy12280 374 TNEYEMTLQSLLEYPVS 390 (758)
Q Consensus 374 ~~~~~~~l~~~l~~G~s 390 (758)
++++...+..+.++|++
T Consensus 293 ~~~li~~l~~~vs~ngn 309 (346)
T PF01120_consen 293 ADELIDILVDSVSRNGN 309 (346)
T ss_dssp HHHHHHHHHHHHTBTEE
T ss_pred HHHHHHHHHHHhccCce
Confidence 99999999889888875
No 88
>PRK01060 endonuclease IV; Provisional
Probab=68.84 E-value=77 Score=33.52 Aligned_cols=94 Identities=14% Similarity=0.334 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCce---EEecCCCccccccCCCCCCcc
Q psy12280 151 WRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLF---VIIRPGPYICAEWDFGGMPSY 227 (758)
Q Consensus 151 W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~---VIlRpGPYIcAEw~~GGlP~W 227 (758)
+++.|++++++|+++|+..+. .|. .|.-. ..+..++.++-+++++.||. +.+ -+||..
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~----~p~--~~~~~-~~~~~~~~~lk~~~~~~gl~~~~~~~-h~~~~~----------- 74 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG----NPQ--QWKRK-PLEELNIEAFKAACEKYGISPEDILV-HAPYLI----------- 74 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC----CCC--CCcCC-CCCHHHHHHHHHHHHHcCCCCCceEE-ecceEe-----------
Confidence 899999999999999999542 221 11100 00124678899999999997 333 334420
Q ss_pred cccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEecc
Q psy12280 228 LLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGV 275 (758)
Q Consensus 228 L~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQI 275 (758)
.+-+.++..+++..+.+++.+...+.+ | .++|.+..
T Consensus 75 -------nl~~~d~~~r~~s~~~~~~~i~~A~~l----g-a~~vv~h~ 110 (281)
T PRK01060 75 -------NLGNPNKEILEKSRDFLIQEIERCAAL----G-AKLLVFHP 110 (281)
T ss_pred -------cCCCCCHHHHHHHHHHHHHHHHHHHHc----C-CCEEEEcC
Confidence 123356777777777777777766554 2 45555543
No 89
>PLN02960 alpha-amylase
Probab=68.36 E-value=8.7 Score=47.82 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHcCCCEEEEe-cc-------cCcCCCC--CCeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 150 YWRDRLRKLRAMGANTVETY-IA-------WNLHEPL--KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 150 ~W~drL~k~Ka~GlNtV~tY-v~-------Wn~HEP~--~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
.=+++|.-+|++|+|+|+.- |+ |.+.--- .=.-.|.. ..||.+|++.|+++||.|||-.
T Consensus 418 ~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGt---p~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 418 FTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGT---PDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCC---HHHHHHHHHHHHHCCCEEEEEe
Confidence 33567999999999999974 32 3221000 00012333 3799999999999999999874
No 90
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=68.28 E-value=5.9 Score=46.65 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCCC-CCe---eeeeCCCc----cccHHHHHHHHHHCCceEEec
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEPL-KDV---YEFGDNNK----DIDFVKFIKIAQEEDLFVIIR 210 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~-~G~---fdF~g~~~----~~DL~~Fl~la~e~GL~VIlR 210 (758)
=.-+.++|.-+|++|+|+|-.-=+... +. ..- -||--..+ ..|+.++++.|+++||.||+-
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~--~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQS--PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCC--CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 345788999999999999987411111 11 111 22211111 379999999999999999985
No 91
>PLN02361 alpha-amylase
Probab=68.11 E-value=18 Score=41.45 Aligned_cols=80 Identities=10% Similarity=0.173 Sum_probs=47.7
Q ss_pred CCEEeEEEEEeecCCCCChhhH---HHHHHHHHHcCCCEEEEecccCc---CCCCCCe-eeeeCC-CccccHHHHHHHHH
Q psy12280 130 NGKEFRILSGSIHYFRVRPEYW---RDRLRKLRAMGANTVETYIAWNL---HEPLKDV-YEFGDN-NKDIDFVKFIKIAQ 201 (758)
Q Consensus 130 nGkp~~i~sG~~Hy~R~p~e~W---~drL~k~Ka~GlNtV~tYv~Wn~---HEP~~G~-fdF~g~-~~~~DL~~Fl~la~ 201 (758)
+|.++++.+=..+.+ ....| .++|.-++++|+++|-+.=+... |--.+.. |+.+-. ++..||.++++.|+
T Consensus 9 ~~~~v~lQ~F~W~~~--~~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h 86 (401)
T PLN02361 9 NGREILLQAFNWESH--KHDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMK 86 (401)
T ss_pred CCCcEEEEEEeccCC--ccHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHH
Confidence 345555544443332 22344 55677889999999987633322 2122211 222110 11479999999999
Q ss_pred HCCceEEecC
Q psy12280 202 EEDLFVIIRP 211 (758)
Q Consensus 202 e~GL~VIlRp 211 (758)
+.||.||+-.
T Consensus 87 ~~gi~vi~D~ 96 (401)
T PLN02361 87 QYNVRAMADI 96 (401)
T ss_pred HcCCEEEEEE
Confidence 9999999854
No 92
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=65.41 E-value=11 Score=40.26 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=48.6
Q ss_pred EE-eecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCC
Q psy12280 138 SG-SIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGP 213 (758)
Q Consensus 138 sG-~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGP 213 (758)
|| -+|++ +.+...++-++.+|+.||++|++ ..|..++.- .+..++++.+++.||.|+-..|.
T Consensus 60 GGtl~E~~-~~q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~~----~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 60 GGTLFEIA-HSKGKFDEYLNECDELGFEAVEI---------SDGSMEISL----EERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred CccHHHHH-HHhhhHHHHHHHHHHcCCCEEEE---------cCCccCCCH----HHHHHHHHHHHhCCCeEeccccc
Confidence 44 45553 33467777888999999999998 456677764 57889999999999999988763
No 93
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=65.33 E-value=9.5 Score=45.69 Aligned_cols=59 Identities=19% Similarity=0.333 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHcCCCEEEEe-cc---------------cCcCCCCCCee-----eeeCCC-----ccccHHHHHHHHHHC
Q psy12280 150 YWRDRLRKLRAMGANTVETY-IA---------------WNLHEPLKDVY-----EFGDNN-----KDIDFVKFIKIAQEE 203 (758)
Q Consensus 150 ~W~drL~k~Ka~GlNtV~tY-v~---------------Wn~HEP~~G~f-----dF~g~~-----~~~DL~~Fl~la~e~ 203 (758)
--.+.|.-+|++|+|+|..- |+ |.+. +-.| .|.... ...+|.+|++.|+++
T Consensus 165 g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~---~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~ 241 (605)
T TIGR02104 165 GVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYD---PLNYNVPEGSYSTNPYDPATRIRELKQMIQALHEN 241 (605)
T ss_pred cchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCC---CccCCCcChhhhcCCCccchHHHHHHHHHHHHHHC
Confidence 34577999999999999873 32 2222 1000 011100 025899999999999
Q ss_pred CceEEecC
Q psy12280 204 DLFVIIRP 211 (758)
Q Consensus 204 GL~VIlRp 211 (758)
||.|||-.
T Consensus 242 Gi~VilDv 249 (605)
T TIGR02104 242 GIRVIMDV 249 (605)
T ss_pred CCEEEEEE
Confidence 99999874
No 94
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=64.92 E-value=8.8 Score=45.67 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=50.8
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEe-cccCcCCCCCCee---e--eeCCCc----cccHHHHHHHHHHCCceEEecCCCccc
Q psy12280 147 RPEYWRDRLRKLRAMGANTVETY-IAWNLHEPLKDVY---E--FGDNNK----DIDFVKFIKIAQEEDLFVIIRPGPYIC 216 (758)
Q Consensus 147 p~e~W~drL~k~Ka~GlNtV~tY-v~Wn~HEP~~G~f---d--F~g~~~----~~DL~~Fl~la~e~GL~VIlRpGPYIc 216 (758)
.++.=++.|.+|+.+.||.|+.| ..|-+|.|-|+.= + |....+ ..=+...|+.|++.|+.++.=--=|-+
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa 195 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAA 195 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcc
Confidence 35678899999999999999999 8899999987654 2 221111 223678999999999999854322323
Q ss_pred ccc--CCCCCCccccc
Q psy12280 217 AEW--DFGGMPSYLLR 230 (758)
Q Consensus 217 AEw--~~GGlP~WL~~ 230 (758)
-+. ..|=.|.|-+-
T Consensus 196 ~~~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 196 NNNYEEDGVSPEWGLY 211 (559)
T ss_dssp ETT--S--SS-GGBEE
T ss_pred ccCcccccCCchhhhh
Confidence 333 35667888764
No 95
>PRK09505 malS alpha-amylase; Reviewed
Probab=64.72 E-value=10 Score=46.15 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCCEEEEe-cccCcCC-----------------CCCC-----eeeeeCCCccccHHHHHHHHHHCCceE
Q psy12280 151 WRDRLRKLRAMGANTVETY-IAWNLHE-----------------PLKD-----VYEFGDNNKDIDFVKFIKIAQEEDLFV 207 (758)
Q Consensus 151 W~drL~k~Ka~GlNtV~tY-v~Wn~HE-----------------P~~G-----~fdF~g~~~~~DL~~Fl~la~e~GL~V 207 (758)
+.+.|.-+|++|+|+|-+- ++=+.|. .-+- .-.|.. ..||+.+++.|+++||+|
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt---~~dfk~Lv~~aH~~Gi~V 308 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGT---EADLRTLVDEAHQRGIRI 308 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCC---HHHHHHHHHHHHHCCCEE
Confidence 6778999999999999853 4333222 1110 012333 479999999999999999
Q ss_pred EecC
Q psy12280 208 IIRP 211 (758)
Q Consensus 208 IlRp 211 (758)
|+-.
T Consensus 309 ilD~ 312 (683)
T PRK09505 309 LFDV 312 (683)
T ss_pred EEEE
Confidence 9874
No 96
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=62.59 E-value=31 Score=28.62 Aligned_cols=55 Identities=18% Similarity=0.043 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEe
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVII 209 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIl 209 (758)
|..-.+.++.+.+.|+|..++|++= ++. ++.+.+... |.++..+..+++|+.|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~~----~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIVS----DPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEEC----CHHHHHHHHHHCCCEEEC
Confidence 5567788999999999999999732 333 588888763 677999999999988764
No 97
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=60.90 E-value=23 Score=39.43 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHcCCCEEEEe-------cccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 148 PEYWRDRLRKLRAMGANTVETY-------IAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tY-------v~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
++.-++.|+.+|+.|+|+|-+= |.+....|..-+..-.-. .-.|+.++++.++++|+++|.|.
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~-~i~D~~~l~~~l~e~gIY~IARI 81 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKP-YIKDLKALVKKLKEHGIYPIARI 81 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccc-cccCHHHHHHHHHHCCCEEEEEE
Confidence 5678889999999999998752 334333332211111100 02799999999999999999996
No 98
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=60.88 E-value=99 Score=33.83 Aligned_cols=72 Identities=19% Similarity=0.152 Sum_probs=42.9
Q ss_pred EeEEEEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCC
Q psy12280 133 EFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPG 212 (758)
Q Consensus 133 p~~i~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpG 212 (758)
|-++++...-..|-+...=++.-+.+++.|+--+.+ |....|.+ .+ ...+..+++.|+++|+-|.+..|
T Consensus 97 pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l------~p~~~~~~---~~--~~~~~pi~~~a~~~gvpv~ihtG 165 (293)
T COG2159 97 PDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKL------HPVAQGFY---PD--DPRLYPIYEAAEELGVPVVIHTG 165 (293)
T ss_pred CcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEe------cccccCCC---CC--ChHHHHHHHHHHHcCCCEEEEeC
Confidence 334455554455655334444445556678887777 21111111 11 13467899999999999999988
Q ss_pred Ccc
Q psy12280 213 PYI 215 (758)
Q Consensus 213 PYI 215 (758)
++.
T Consensus 166 ~~~ 168 (293)
T COG2159 166 AGP 168 (293)
T ss_pred CCC
Confidence 643
No 99
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=58.70 E-value=43 Score=35.74 Aligned_cols=74 Identities=9% Similarity=0.063 Sum_probs=54.3
Q ss_pred ecCCCC---ChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCc-cccHHHHHHHHHHCCceEEecCCCcc
Q psy12280 141 IHYFRV---RPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNK-DIDFVKFIKIAQEEDLFVIIRPGPYI 215 (758)
Q Consensus 141 ~Hy~R~---p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~-~~DL~~Fl~la~e~GL~VIlRpGPYI 215 (758)
+|..|. ..+..++.++++++.|+-+=...+=+.+... -+.|.|+.+.. .-|..++++..+++|++|++-.=|+|
T Consensus 13 ~~~~~~~~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 13 YWLSRYGYGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 344444 4677889999999999997666666555543 35663344322 57899999999999999999887777
No 100
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=57.83 E-value=13 Score=48.18 Aligned_cols=56 Identities=25% Similarity=0.365 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCCEEEEe-cccCcCCCC---CCe-----e----------eee--CCCccccHHHHHHHHHHCCceEEecC
Q psy12280 153 DRLRKLRAMGANTVETY-IAWNLHEPL---KDV-----Y----------EFG--DNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 153 drL~k~Ka~GlNtV~tY-v~Wn~HEP~---~G~-----f----------dF~--g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
..|.-+|++|+|+|..- |+=+..|.. .|. | .|. .. .++.++++.|+++||.|||-.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~---~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGE---EEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcH---HHHHHHHHHHHHCCCEEEEEE
Confidence 46789999999999874 331111111 000 1 122 33 789999999999999999873
No 101
>PRK14705 glycogen branching enzyme; Provisional
Probab=57.71 E-value=16 Score=47.35 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCCEEEEe-cc-------cCcCC--CCCCeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 153 DRLRKLRAMGANTVETY-IA-------WNLHE--PLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 153 drL~k~Ka~GlNtV~tY-v~-------Wn~HE--P~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
+.|.-+|+||+|+|+.- |+ |.+.- ...=.=.|... .||.+|++.|+++||.|||--
T Consensus 770 ~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~---~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 770 ELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHP---DEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCH---HHHHHHHHHHHHCCCEEEEEe
Confidence 34688999999999973 31 32210 00000133333 899999999999999999863
No 102
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=57.53 E-value=35 Score=44.71 Aligned_cols=122 Identities=15% Similarity=0.205 Sum_probs=68.9
Q ss_pred ceeeeEeecCCCceEEECC-EEeEEEEEee--cCCCC--ChhhHHHHHHHHHHcCCCEEEEe-cc-cC-cCCC--CCCee
Q psy12280 113 KENTGLQYDDNPNTFLLNG-KEFRILSGSI--HYFRV--RPEYWRDRLRKLRAMGANTVETY-IA-WN-LHEP--LKDVY 182 (758)
Q Consensus 113 ~r~~~v~~d~~~~~f~lnG-kp~~i~sG~~--Hy~R~--p~e~W~drL~k~Ka~GlNtV~tY-v~-Wn-~HEP--~~G~f 182 (758)
.+++-|..+ -.+.||| +.+.+=|-++ ...++ +=+.|+++|+.+|++|+|+|-.- |+ =. ...| ..+.+
T Consensus 94 ~~~~y~~V~---P~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl 170 (1464)
T TIGR01531 94 TGGGYFVVL---PMLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQL 170 (1464)
T ss_pred CCceEEEeC---CeeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchh
Confidence 455555655 5788888 5444333333 33343 23779999999999999999752 22 11 0011 11222
Q ss_pred e----e----eCCCccccHHHHHHHHHHC-CceEEecCCCccccccCCCCCCcccccCCCceeccCCHhHHH
Q psy12280 183 E----F----GDNNKDIDFVKFIKIAQEE-DLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLN 245 (758)
Q Consensus 183 d----F----~g~~~~~DL~~Fl~la~e~-GL~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~~Rt~dp~y~~ 245 (758)
. | .+. .|+.++++.|++. ||+||+-. =+=+--|+ =.|+...|+.-....+.+|++
T Consensus 171 ~idP~~~~~~~~~---~d~~~lV~~~h~~~Gm~~ilDv-V~NHTa~d----s~Wl~eHPEa~Yn~~~sP~L~ 234 (1464)
T TIGR01531 171 QLNQHFKSQKDGK---NDVQALVEKLHRDWNVLSITDI-VFNHTANN----SPWLLEHPEAAYNCITSPHLR 234 (1464)
T ss_pred hcChhhcccCCcH---HHHHHHHHHHHHhcCCEEEEEe-eecccccC----CHHHHhChHhhcCCCCCchhh
Confidence 2 3 133 7899999999986 99999763 11111112 247766665433333444443
No 103
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=56.87 E-value=28 Score=39.04 Aligned_cols=72 Identities=28% Similarity=0.256 Sum_probs=57.7
Q ss_pred EEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCe-eeeeCCCccccHHHHHHHHHHCCceEEecCCCcc
Q psy12280 137 LSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDV-YEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYI 215 (758)
Q Consensus 137 ~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~-fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYI 215 (758)
+|-|+.+.|.|.+.=..-|++|...||.-|-| ++|.|.+.. --| .-+..+++.|.++||+||+-.-|=|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~------~~~~ell~~Anklg~~vivDvnPsi 73 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYF------HRFKELLKEANKLGLRVIVDVNPSI 73 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHH------HHHHHHHHHHHhcCcEEEEEcCHHH
Confidence 56788888999999899999999999999988 899888621 111 2367788999999999999987766
Q ss_pred ccc
Q psy12280 216 CAE 218 (758)
Q Consensus 216 cAE 218 (758)
.-|
T Consensus 74 l~~ 76 (360)
T COG3589 74 LKE 76 (360)
T ss_pred Hhh
Confidence 544
No 104
>PRK09267 flavodoxin FldA; Validated
Probab=56.16 E-value=40 Score=33.12 Aligned_cols=114 Identities=12% Similarity=0.120 Sum_probs=63.7
Q ss_pred EeEEEEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEec--
Q psy12280 133 EFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIR-- 210 (758)
Q Consensus 133 p~~i~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlR-- 210 (758)
...+++.+.|....++..|.+-+.+++...++...+.+|= ......-.-.|. .-+..+.+++.+.|..++-.
T Consensus 48 d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~~-----~~~~~l~~~l~~~g~~~vg~~~ 121 (169)
T PRK09267 48 DLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYFC-----DAMGTLYDIVEPRGATIVGHWP 121 (169)
T ss_pred CEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHHH-----HHHHHHHHHHHHCCCEEECccC
Confidence 3478999999878888999999998887777766666662 221111001121 23566777888999766522
Q ss_pred CCCccccccCC--CCCCcccccCCCceec-cCCHhHH-HHHHHHHHHHHHHh
Q psy12280 211 PGPYICAEWDF--GGMPSYLLREPGIKLR-SMDPKYL-NRVRQYFNNLIPLL 258 (758)
Q Consensus 211 pGPYIcAEw~~--GGlP~WL~~~p~i~~R-t~dp~y~-~~v~~w~~~l~~~l 258 (758)
.-.|..-+-.. +|.+ .. ..+- .+.+.+. +++++|.++|.+.+
T Consensus 122 ~~gy~~~~~~~~~~~~~--~g----~~~d~~~~~~~td~~i~~w~~~i~~~~ 167 (169)
T PRK09267 122 TDGYTFEASKAVDDGKF--VG----LALDEDNQSELTDERIEAWVKQIKPEF 167 (169)
T ss_pred CCCccccccceeeCCEE--EE----EEecCCCchhhhHHHHHHHHHHHHHHh
Confidence 11233211100 1110 00 0000 1234454 88899999988764
No 105
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=56.07 E-value=56 Score=37.26 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=42.0
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 147 RPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 147 p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
..+.|+++++.+|++|+.+... |..-+. . +.. .-|...++.|++.|+++++.+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaL----Nig~~d--~--~~~----~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFAL----NIGSSD--S--WQP----DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----ecccCC--c--ccH----HHHHHHHHHHHhcCCEEEEEe
Confidence 7899999999999999999988 444111 1 111 458888999999999999986
No 106
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=55.67 E-value=1e+02 Score=34.37 Aligned_cols=122 Identities=20% Similarity=0.228 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcccccC
Q psy12280 152 RDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLRE 231 (758)
Q Consensus 152 ~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~WL~~~ 231 (758)
...+...++.|.+||-. +.+ -+ =| ||..+..+.+++.||.++...|+|.-+.|+ .|+...
T Consensus 51 ~~e~~~~~a~Gg~TIVD--------~T~--~~-~G----Rdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~ 110 (316)
T COG1735 51 IAELKRLMARGGQTIVD--------ATN--IG-IG----RDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALR 110 (316)
T ss_pred HHHHHHHHHcCCCeEee--------CCc--cc-cC----cCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhC
Confidence 33566667789999876 211 01 13 899999999999999999999999998886 576643
Q ss_pred CCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCCCC-cchHHHHHHHHHHHHhc-CCCcceE
Q psy12280 232 PGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPN-VADKNYMRELVAMLRSN-GIRSPLF 309 (758)
Q Consensus 232 p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~~y-~~d~~Y~~~L~~~~~~~-G~~vpl~ 309 (758)
| ++...+.+...+..-. . |+=|..=|=-|-|. + +-...=.+-|+..++++ -..+|+.
T Consensus 111 ~--------------i~~~ae~~v~ei~~Gi--~--gT~ikAGiIk~~~~---~~~iTp~Eek~lrAaA~A~~~Tg~Pi~ 169 (316)
T COG1735 111 P--------------IEELAEFVVKEIEEGI--A--GTGIKAGIIKEAGG---SPAITPLEEKSLRAAARAHKETGAPIS 169 (316)
T ss_pred C--------------HHHHHHHHHHHHHhcc--c--CCccccceeeeccC---cccCCHHHHHHHHHHHHHhhhcCCCeE
Confidence 3 3333333344443211 1 23333334455665 3 22333346666666665 4456777
Q ss_pred EcCCC
Q psy12280 310 TADDP 314 (758)
Q Consensus 310 T~dg~ 314 (758)
|....
T Consensus 170 tHt~~ 174 (316)
T COG1735 170 THTPA 174 (316)
T ss_pred Eeccc
Confidence 66553
No 107
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=55.09 E-value=3.9 Score=42.77 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEec
Q psy12280 152 RDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIR 210 (758)
Q Consensus 152 ~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlR 210 (758)
-...+++.++|.+.|.+.++|..-.+.. ++-. ..++.++.+.|++.||.||++
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~--~~~~----~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGN--EDEV----IEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTH--HHHH----HHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeecccccccccc--HHHH----HHHHHHHHHHHhcCCcEEEEE
Confidence 5678899999999999999996554332 1111 268999999999999999999
No 108
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=55.05 E-value=2.5e+02 Score=29.50 Aligned_cols=93 Identities=18% Similarity=0.183 Sum_probs=60.5
Q ss_pred EeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCe-eeeeCCCccccHHHHHHHHHHCCceEEecCCCcccc
Q psy12280 139 GSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDV-YEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICA 217 (758)
Q Consensus 139 G~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~-fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcA 217 (758)
|+.+..+-| -++.++.+.++|++.|+. ...+|..-. -+++- .+++++.+++++.||.|.+- +||..
T Consensus 3 g~~~~~~~~---~~~~~~~~~~~G~~~vel----~~~~~~~~~~~~~~~----~~~~~l~~~~~~~gl~ls~h-~p~~~- 69 (273)
T smart00518 3 GAHVSAAGG---LYKAFIEAVDIGARSFQL----FLGNPRSWKGVRLSE----ETAEKFKEALKENNIDVSVH-APYLI- 69 (273)
T ss_pred eEEEcccCc---HhHHHHHHHHcCCCEEEE----ECCCCCCCCCCCCCH----HHHHHHHHHHHHcCCCEEEE-CCcee-
Confidence 555555554 347899999999999999 444553210 02222 46888999999999987653 34421
Q ss_pred ccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhcc
Q psy12280 218 EWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPL 261 (758)
Q Consensus 218 Ew~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~ 261 (758)
.+.+.++..+++..+++++.+...+.+
T Consensus 70 -----------------nl~s~d~~~r~~~~~~l~~~i~~A~~l 96 (273)
T smart00518 70 -----------------NLASPDKEKVEKSIERLIDEIKRCEEL 96 (273)
T ss_pred -----------------cCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 133457777777777777777666554
No 109
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=54.75 E-value=29 Score=37.75 Aligned_cols=69 Identities=13% Similarity=0.059 Sum_probs=48.7
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCc-cccHHHHHHHHHHCCceEEecCCCccc
Q psy12280 147 RPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNK-DIDFVKFIKIAQEEDLFVIIRPGPYIC 216 (758)
Q Consensus 147 p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~-~~DL~~Fl~la~e~GL~VIlRpGPYIc 216 (758)
..+..++.++++|+.|+.+=..++=..++... +..+|+.+.. .-|..++++..+++|+.|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~-~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~ 91 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMKEF-QWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA 91 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccccCC-cceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC
Confidence 46778999999999997765544443333322 2124544322 459999999999999999988877775
No 110
>PRK09989 hypothetical protein; Provisional
Probab=53.81 E-value=1.8e+02 Score=30.57 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEe
Q psy12280 150 YWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVII 209 (758)
Q Consensus 150 ~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIl 209 (758)
-.+++|++++++|+..|+...+|. .+.+.+.++++++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~-----------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD-----------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc-----------------CCHHHHHHHHHHcCCcEEE
Confidence 378999999999999999933221 3457788889999999874
No 111
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=53.53 E-value=52 Score=40.22 Aligned_cols=116 Identities=15% Similarity=0.088 Sum_probs=69.9
Q ss_pred EeEEEEEeecCCCCC-----hhhHHHHHHHHHHcCCCEEE---------------EecccCcCCCCCCeeeeeCCCcccc
Q psy12280 133 EFRILSGSIHYFRVR-----PEYWRDRLRKLRAMGANTVE---------------TYIAWNLHEPLKDVYEFGDNNKDID 192 (758)
Q Consensus 133 p~~i~sG~~Hy~R~p-----~e~W~drL~k~Ka~GlNtV~---------------tYv~Wn~HEP~~G~fdF~g~~~~~D 192 (758)
+.+++-..+-|---| .+.-...|+.+|++|+|||- .|.|| -|=|- +-|. .|
T Consensus 313 ~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp~--r~d~------f~ 383 (671)
T PRK14582 313 PQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLPM--RADL------FN 383 (671)
T ss_pred CEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-ccccc--ccCC------cC
Confidence 445555544443322 35567789999999999985 46677 44333 2221 12
Q ss_pred HHHHHHHHHHCCceEEecCCCcccc---------ccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccc
Q psy12280 193 FVKFIKIAQEEDLFVIIRPGPYICA---------EWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQ 262 (758)
Q Consensus 193 L~~Fl~la~e~GL~VIlRpGPYIcA---------Ew~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~ 262 (758)
.-...++.+.|+.|..+-.||-.+ +++..+-|.....+ -..| =.+|..++++|+..|...|+.+.
T Consensus 384 -~~aw~l~~r~~v~v~AWmp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~r--l~P~~pe~r~~i~~i~~dla~~~ 457 (671)
T PRK14582 384 -RVAWQLRTRAGVNVYAWMPVLSFDLDPTLPRVKRLDTGEGKAQIHPE--QYRR--LSPFDDRVRAQVGMLYEDLAGHA 457 (671)
T ss_pred -HHHHHHHHhhCCEEEEeccceeeccCCCcchhhhccccCCccccCCC--CCcC--CCCCCHHHHHHHHHHHHHHHHhC
Confidence 113456999999999999999642 22211212111110 0112 23578899999999999999864
No 112
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=53.42 E-value=27 Score=43.44 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCCCC---Ceee-------eeCCCccccHHHHHHHHHHCCceEEecCCC
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEPLK---DVYE-------FGDNNKDIDFVKFIKIAQEEDLFVIIRPGP 213 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~---G~fd-------F~g~~~~~DL~~Fl~la~e~GL~VIlRpGP 213 (758)
=+.|.+.|.-++++|+++|-+-=++....... +..| |.+. .||.+|++.|+++||.||+-.=|
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~---edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGE---EGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCH---HHHHHHHHHHHHCCCEEEEEecc
Confidence 45689999999999999997642222100000 0112 3344 89999999999999999987533
No 113
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=53.05 E-value=32 Score=38.09 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=46.2
Q ss_pred eecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCc----------cccHHHHHHHHHHCCceEEe
Q psy12280 140 SIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNK----------DIDFVKFIKIAQEEDLFVII 209 (758)
Q Consensus 140 ~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~----------~~DL~~Fl~la~e~GL~VIl 209 (758)
+-|.-|.+ ..-..+++.+|..|+|++-. -.--.-|...|.-..+ ..|+..||+-|+|.|||+|.
T Consensus 69 ~Ah~v~~k-k~~de~fk~ikdn~~Na~Vi-----D~Kdd~G~lty~s~d~~~~~~~sv~~f~Di~~~iKkaKe~giY~IA 142 (400)
T COG1306 69 SAHSVALK-KRLDELFKLIKDNNINAFVI-----DVKDDYGELTYPSSDEINKYTKSVNKFKDIEPVIKKAKENGIYAIA 142 (400)
T ss_pred eehhhcCh-hHHHHHHHHHHhCCCCEEEE-----EecCCCccEeccccchhhhhhhccccccccHHHHHHHHhcCeEEEE
Confidence 44665655 44577899999999999876 2222233333332111 67999999999999999999
Q ss_pred cC
Q psy12280 210 RP 211 (758)
Q Consensus 210 Rp 211 (758)
|.
T Consensus 143 Ri 144 (400)
T COG1306 143 RI 144 (400)
T ss_pred EE
Confidence 95
No 114
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=52.57 E-value=42 Score=27.90 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEe
Q psy12280 150 YWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVII 209 (758)
Q Consensus 150 ~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIl 209 (758)
..++-++++|+.|+++|.+ .-|. .+ ....+|.+++++.|+.||.
T Consensus 16 ~~~~~~~~a~~~g~~~v~i----TDh~------~~------~~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI----TDHG------NL------FGAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE----eeCC------cc------cCHHHHHHHHHHcCCeEEE
Confidence 4678999999999999988 5554 23 3457899999999998874
No 115
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=52.43 E-value=25 Score=39.32 Aligned_cols=115 Identities=21% Similarity=0.290 Sum_probs=66.6
Q ss_pred EEEEecccCcCC--CCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcccccCCCceeccCCHh
Q psy12280 165 TVETYIAWNLHE--PLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPK 242 (758)
Q Consensus 165 tV~tYv~Wn~HE--P~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~~Rt~dp~ 242 (758)
.|.+.|.|+++- +.| ...++.|+++|+.|+-- |.=||+ +-..|+..- +. +++
T Consensus 32 yvD~fvywsh~~~~iPp--------------~~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~~l----L~-~~~- 85 (339)
T cd06547 32 YVDTFVYFSHSAVTIPP--------------ADWINAAHRNGVPVLGT----FIFEWT--GQVEWLEDF----LK-KDE- 85 (339)
T ss_pred hhheeecccCccccCCC--------------cHHHHHHHhcCCeEEEE----EEecCC--CchHHHHHH----hc-cCc-
Confidence 377888888763 222 56799999999999843 244676 334555431 11 111
Q ss_pred HHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCCCCcchHHHHHHHHHHHHhc--CCCcceEEcC
Q psy12280 243 YLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNVADKNYMRELVAMLRSN--GIRSPLFTAD 312 (758)
Q Consensus 243 y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~~y~~d~~Y~~~L~~~~~~~--G~~vpl~T~d 312 (758)
+...++.++|+..++.+-+ .| +.+-+||..+....-..-.++++.|++.+++. +..+..|.+.
T Consensus 86 --~~~~~~a~kLv~lak~yGf-DG----w~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs~ 150 (339)
T cd06547 86 --DGSFPVADKLVEVAKYYGF-DG----WLINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVIWYDSM 150 (339)
T ss_pred --ccchHHHHHHHHHHHHhCC-Cc----eEeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEecC
Confidence 1123455667777776655 44 67788888731000022345677777777764 4445555543
No 116
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=52.35 E-value=1.2e+02 Score=31.87 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=47.5
Q ss_pred EeEEEEEeecCC---CCChhhHHHHHHHHHHcCCCEEEEecc--cCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceE
Q psy12280 133 EFRILSGSIHYF---RVRPEYWRDRLRKLRAMGANTVETYIA--WNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFV 207 (758)
Q Consensus 133 p~~i~sG~~Hy~---R~p~e~W~drL~k~Ka~GlNtV~tYv~--Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~V 207 (758)
-+.+..++.|.+ +.+++..+..-+.+++.|+. |...-+ .|+..|.+....-+- ..+.+-+++|++.|-.+
T Consensus 26 ~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~-ls~h~p~~~nl~s~d~~~r~~~~----~~l~~~i~~A~~lGa~~ 100 (273)
T smart00518 26 SFQLFLGNPRSWKGVRLSEETAEKFKEALKENNID-VSVHAPYLINLASPDKEKVEKSI----ERLIDEIKRCEELGIKA 100 (273)
T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCC-EEEECCceecCCCCCHHHHHHHH----HHHHHHHHHHHHcCCCE
Confidence 345555666664 57788888888889999997 444322 244444433333222 35778899999999974
Q ss_pred E-ecCC
Q psy12280 208 I-IRPG 212 (758)
Q Consensus 208 I-lRpG 212 (758)
| +.||
T Consensus 101 vv~h~g 106 (273)
T smart00518 101 LVFHPG 106 (273)
T ss_pred EEEccc
Confidence 4 4554
No 117
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=51.89 E-value=36 Score=30.10 Aligned_cols=66 Identities=21% Similarity=0.342 Sum_probs=42.8
Q ss_pred cceEEEeecccccCCCCCceeEeccccceEEEEEECCccccCCcCCcCCcceeEEEEccceeEEEec-CCCCcEEEEEEe
Q psy12280 515 FGYTLYRQPDWHIPTDQDAIMRIEGRVADIAIVMVNQERQTVPLSDVQDLNEFGFWKTENAELLLNI-TRPANNIDILVE 593 (758)
Q Consensus 515 ~GyvlYrt~~~~i~~~~~~~L~i~~~~~D~a~Vfvng~~~~~~~~~~~~~~~vG~l~~~~~~~~l~~-~~~~~~L~ILVE 593 (758)
.|-+++...+ .+......|++.++ ....+-||||+ ++|...... ++.++. ..+.++|++ |+
T Consensus 18 ~g~~~~~~~~--~~~~~~l~l~a~~~-~~~~~W~vdg~-------------~~g~~~~~~-~~~~~~~~~G~h~l~v-vD 79 (89)
T PF06832_consen 18 DGAVLALDPG--IPERQPLVLKAAGG-RGPVYWFVDGE-------------PLGTTQPGH-QLFWQPDRPGEHTLTV-VD 79 (89)
T ss_pred CCCEEEeCCC--CCccceEEEEEeCC-CCcEEEEECCE-------------EcccCCCCC-eEEeCCCCCeeEEEEE-Ec
Confidence 4556666541 12223355666455 56999999999 887665543 455555 467888887 88
Q ss_pred ccCCC
Q psy12280 594 NTGRV 598 (758)
Q Consensus 594 N~GRv 598 (758)
..|+.
T Consensus 80 ~~G~~ 84 (89)
T PF06832_consen 80 AQGRS 84 (89)
T ss_pred CCCCE
Confidence 88874
No 118
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=51.33 E-value=24 Score=31.34 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=24.0
Q ss_pred CCEEEeccccc-cccCC-CC----c--chHHHHHHHHH---HHHhcCCCcceEEc
Q psy12280 268 GPIIMLGVENE-LAVLG-PN----V--ADKNYMRELVA---MLRSNGIRSPLFTA 311 (758)
Q Consensus 268 GpIImvQIENE-yg~~~-~y----~--~d~~Y~~~L~~---~~~~~G~~vpl~T~ 311 (758)
+.|.+|+|-|| -++.. .+ + ....|.+||++ .+|+.+.+.|+.++
T Consensus 9 ~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g 63 (88)
T PF12876_consen 9 PRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSG 63 (88)
T ss_dssp GGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--
T ss_pred CCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEee
Confidence 78999999999 44211 11 1 12345555554 56778999887543
No 119
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=51.31 E-value=25 Score=46.91 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=44.5
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCe---e---e-------eeCCCccccHHHHHHHHHHCCceEEecCCC
Q psy12280 147 RPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDV---Y---E-------FGDNNKDIDFVKFIKIAQEEDLFVIIRPGP 213 (758)
Q Consensus 147 p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~---f---d-------F~g~~~~~DL~~Fl~la~e~GL~VIlRpGP 213 (758)
+=+.|.++|.-+|++|+|+|-.-=++ +..+|. | | |.+. .|+.+|++.|+++||.||+-.=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~---edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGE---EGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCH---HHHHHHHHHHHHCCCEEEEEecc
Confidence 45679999999999999999764222 222221 2 2 3344 79999999999999999987533
No 120
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=50.60 E-value=13 Score=37.33 Aligned_cols=41 Identities=32% Similarity=0.408 Sum_probs=22.5
Q ss_pred CceEEEEEECCeeceeeec--cC------------Cc---eEEEeCccccCCCCcEEEE
Q psy12280 688 DWTRGVVFVNGFNLGRYSR--LS------------PY---QTLYLPAPLLHLGQNKISV 729 (758)
Q Consensus 688 gwgKG~v~VNG~nLGRYW~--iG------------PQ---~tLYVP~~~Lk~G~N~Ivv 729 (758)
.-++=.|.||| ..+..+. .| -+ .++-||+..|++|.|+|.+
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~~~~d~~~~r~g~~~G~~~~~~~~ipa~~L~~G~Nti~l 148 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAPFGNDNAIYRSGIHRGNYRLYEFDIPASLLKAGENTITL 148 (167)
T ss_dssp TT-EEEEEETT-EE-----------S--GGGT---S---EEEEEE-TTSS-SEEEEEEE
T ss_pred CCCCEEEEEcC-ccCCccccccCCCCceeeCceecccEEEEEEEEcHHHEEeccEEEEE
Confidence 33677999999 6666653 21 11 2234999999999999865
No 121
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=50.52 E-value=69 Score=34.70 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=57.4
Q ss_pred eEEECCEEeEEEEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCc
Q psy12280 126 TFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDL 205 (758)
Q Consensus 126 ~f~lnGkp~~i~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL 205 (758)
++.+.|.++.++.|=.=- -.++.-.+-.+++|++|+..++.|.+=+...| +.|.|.. ...+..+-+.|++.||
T Consensus 20 ~~~~g~~~~~~iaGPCsi--e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~----~s~~G~g-~~gl~~l~~~~~~~Gl 92 (266)
T PRK13398 20 DVVIGGEEKIIIAGPCAV--ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSP----YSFQGLG-EEGLKILKEVGDKYNL 92 (266)
T ss_pred CEEEcCCCEEEEEeCCcC--CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCC----CccCCcH-HHHHHHHHHHHHHcCC
Confidence 356666688888883211 13777888899999999999999977533332 3555310 2678889999999999
Q ss_pred eEEecC
Q psy12280 206 FVIIRP 211 (758)
Q Consensus 206 ~VIlRp 211 (758)
.++-.|
T Consensus 93 ~~~te~ 98 (266)
T PRK13398 93 PVVTEV 98 (266)
T ss_pred CEEEee
Confidence 999887
No 122
>PRK03705 glycogen debranching enzyme; Provisional
Probab=49.91 E-value=26 Score=42.63 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=35.2
Q ss_pred HHHHHHHcCCCEEEEe-cccCcCCCCC---C-e----e---e-------eeCCC--ccccHHHHHHHHHHCCceEEec
Q psy12280 154 RLRKLRAMGANTVETY-IAWNLHEPLK---D-V----Y---E-------FGDNN--KDIDFVKFIKIAQEEDLFVIIR 210 (758)
Q Consensus 154 rL~k~Ka~GlNtV~tY-v~Wn~HEP~~---G-~----f---d-------F~g~~--~~~DL~~Fl~la~e~GL~VIlR 210 (758)
+|.-+|++|+|+|..- |+=...++.. | . | | |.... ...+|+++++.|+++||.|||-
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 5889999999999863 3211111100 0 0 1 1 11100 0147999999999999999986
No 123
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=49.12 E-value=11 Score=41.43 Aligned_cols=59 Identities=22% Similarity=0.256 Sum_probs=42.1
Q ss_pred EEEEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEE-ecC
Q psy12280 135 RILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVI-IRP 211 (758)
Q Consensus 135 ~i~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VI-lRp 211 (758)
++++-+..--++| +.|++.+..+-++|+|.|+- +|+.- .|..+|.++|+++|..++ +|.
T Consensus 36 liiGiA~~GG~lp-~~w~~~i~~Ai~~Gl~IvsG-----LH~~L------------~ddpel~~~A~~~g~~i~DvR~ 95 (301)
T PF07755_consen 36 LIIGIAPAGGRLP-PSWRPVILEAIEAGLDIVSG-----LHDFL------------SDDPELAAAAKKNGVRIIDVRK 95 (301)
T ss_dssp EEE---STTHCCH-CCHHHHHHHHHHTT-EEEE------SSS-H------------CCHHHHHCCHHCCT--EEETTS
T ss_pred EEEecCcCCCcCC-HHHHHHHHHHHHcCCCEEec-----Chhhh------------ccCHHHHHHHHHcCCeEeeccC
Confidence 4455555555665 88999999999999999998 99865 578999999999999877 553
No 124
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.59 E-value=61 Score=35.61 Aligned_cols=69 Identities=14% Similarity=0.030 Sum_probs=48.5
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCe-eeeeCCCc-cccHHHHHHHHHHCCceEEecCCCccc
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDV-YEFGDNNK-DIDFVKFIKIAQEEDLFVIIRPGPYIC 216 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~-fdF~g~~~-~~DL~~Fl~la~e~GL~VIlRpGPYIc 216 (758)
.+.-++.++++++.|+-+=.+.+=+.+..-.-+. .+|+.+.. .-|..++++..+++|++|++-.=|||+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 4566888999999999877665543332221122 24554322 568999999999999999988878775
No 125
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=47.45 E-value=20 Score=37.67 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEecccCcCCCCC----CeeeeeCCCccccHHHHHHHHHHCCceEEecC-CCc
Q psy12280 149 EYWRDRLRKLRAMGANTVETYIAWNLHEPLK----DVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP-GPY 214 (758)
Q Consensus 149 e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~----G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp-GPY 214 (758)
+.+++.++.++++|+.+|.+ |..|.... -.+.+.- ..|.++.++|+++|+.+.+++ +||
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~~----~~l~~l~~~a~~~gv~l~iE~~~~~ 153 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRLA----ENLSELCEYAENIGMDLILEPLTPY 153 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHHH----HHHHHHHHHHHHcCCEEEEecCCCC
Confidence 45677889999999999966 22232111 1122221 368899999999999999998 444
No 126
>PRK10658 putative alpha-glucosidase; Provisional
Probab=47.45 E-value=6.3e+02 Score=31.11 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=44.9
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEe--cccCcCCCC-CCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccc
Q psy12280 147 RPEYWRDRLRKLRAMGANTVETY--IAWNLHEPL-KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYIC 216 (758)
Q Consensus 147 p~e~W~drL~k~Ka~GlNtV~tY--v~Wn~HEP~-~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIc 216 (758)
+.+.-.+.++++|+.|+-+=..+ ++|. ... -+.|.|+-. ..-|.+.+++..++.|++|++..=|||.
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~--~~~~~~~f~wd~~-~FPdp~~mi~~L~~~G~k~~~~i~P~i~ 350 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWM--KEFQWCDFEWDPR-TFPDPEGMLKRLKAKGLKICVWINPYIA 350 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhh--cCCceeeeEEChh-hCCCHHHHHHHHHHCCCEEEEeccCCcC
Confidence 34456778899999998754433 3453 221 234444321 1348899999999999999998877773
No 127
>PLN03059 beta-galactosidase; Provisional
Probab=47.21 E-value=59 Score=40.67 Aligned_cols=70 Identities=21% Similarity=0.203 Sum_probs=48.5
Q ss_pred CCceEEEEEEeccCCCCC----cceeeecCCc-eEEEEEECCeeceeeec--cCCceEEEeCccccCCCCcEEEEEEe
Q psy12280 662 PSPTLFQAILTITTLDDL----RDTYLDMQDW-TRGVVFVNGFNLGRYSR--LSPYQTLYLPAPLLHLGQNKISVFEH 732 (758)
Q Consensus 662 ~~p~fyr~tF~l~~~~~~----~DTfLdm~gw-gKG~v~VNG~nLGRYW~--iGPQ~tLYVP~~~Lk~G~N~IvvfE~ 732 (758)
.+-.||+++|+++..+.. .+..|.+.+- -+..|||||.-+|.-.. .+++.++--|-. |+.|.|+|-||=+
T Consensus 469 ~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~-l~~g~n~L~iLse 545 (840)
T PLN03059 469 TDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVK-LTVGINKISLLSV 545 (840)
T ss_pred CceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccc-cCCCceEEEEEEE
Confidence 578999999998743211 2234666554 48999999999999875 556555543332 6789999988754
No 128
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=47.17 E-value=40 Score=42.35 Aligned_cols=62 Identities=8% Similarity=0.071 Sum_probs=44.8
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCC------eeee-------eCCCccccHHHHHHHHHHCCceEEecCC
Q psy12280 146 VRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKD------VYEF-------GDNNKDIDFVKFIKIAQEEDLFVIIRPG 212 (758)
Q Consensus 146 ~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G------~fdF-------~g~~~~~DL~~Fl~la~e~GL~VIlRpG 212 (758)
..=+.|.++|.-++++|+|+|-.-=++ +..+| ..|| .+. .|+.+|++.|+++||.||+-.=
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~---~a~~gs~hGYdv~D~~~idp~lGt~---e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPIL---AARPGSTHGYDVVDHTRINPELGGE---EGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCc---cCCCCCCCCCCcCCCCCcCCCCCCH---HHHHHHHHHHHHCCCEEEEEec
Confidence 344669999999999999999764222 22222 1233 343 7999999999999999998764
Q ss_pred C
Q psy12280 213 P 213 (758)
Q Consensus 213 P 213 (758)
|
T Consensus 91 ~ 91 (879)
T PRK14511 91 P 91 (879)
T ss_pred c
Confidence 4
No 129
>PLN00196 alpha-amylase; Provisional
Probab=47.04 E-value=69 Score=37.05 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCEEEEecccC---cCCCCCCe-eeeeC--CCccccHHHHHHHHHHCCceEEecC
Q psy12280 152 RDRLRKLRAMGANTVETYIAWN---LHEPLKDV-YEFGD--NNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 152 ~drL~k~Ka~GlNtV~tYv~Wn---~HEP~~G~-fdF~g--~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
.++|.-+|++|+++|-.-=+.- .|--.+.. |+.+- -++..||.++++.|+++||.||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5778889999999998752221 12222221 33320 1225799999999999999999764
No 130
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=46.61 E-value=83 Score=34.24 Aligned_cols=107 Identities=15% Similarity=0.087 Sum_probs=68.3
Q ss_pred EEEEEeecCCCCCh---hhH-HHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEec
Q psy12280 135 RILSGSIHYFRVRP---EYW-RDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIR 210 (758)
Q Consensus 135 ~i~sG~~Hy~R~p~---e~W-~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlR 210 (758)
+-+++..|+..-|. ... .++|++-.++|.+.+-| ++-|+- ..+.+|++.|++.|+.|=+-
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iT------------Q~~Fd~----~~~~~f~~~~~~~gi~~PIi 193 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIIT------------QLFYDV----DNFLKFVNDCRAIGIDCPIV 193 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeec------------cceecH----HHHHHHHHHHHHcCCCCCEE
Confidence 35788888866542 222 23454444699999888 333333 35789999999997765555
Q ss_pred CCCccc---------cccCCCCCCcccccCCCceec---cCCHhHHHHHHHHHHHHHHHhhcc
Q psy12280 211 PGPYIC---------AEWDFGGMPSYLLREPGIKLR---SMDPKYLNRVRQYFNNLIPLLEPL 261 (758)
Q Consensus 211 pGPYIc---------AEw~~GGlP~WL~~~p~i~~R---t~dp~y~~~v~~w~~~l~~~l~~~ 261 (758)
||...+ +||..--+|.|+.+. ++ ..+....+.--++..+++..|...
T Consensus 194 ~GI~pi~s~~~~~~~~~~~Gi~vP~~l~~~----l~~~~~~~~~~~~~gi~~a~~~~~~l~~~ 252 (281)
T TIGR00677 194 PGIMPINNYASFLRRAKWSKTKIPQEIMSR----LEPIKDDDEAVRDYGIELIVEMCQKLLAS 252 (281)
T ss_pred eeccccCCHHHHHHHHhcCCCCCCHHHHHH----HHhccCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 555444 678877789999873 22 223444556666666677766553
No 131
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=46.59 E-value=30 Score=42.28 Aligned_cols=58 Identities=12% Similarity=0.199 Sum_probs=36.0
Q ss_pred HHHHHHHcCCCEEEEe-cccCc-------------CCCCCCee-----eeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 154 RLRKLRAMGANTVETY-IAWNL-------------HEPLKDVY-----EFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 154 rL~k~Ka~GlNtV~tY-v~Wn~-------------HEP~~G~f-----dF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
.|.-+|++|+|+|..- |+=.. |--.+..| .|...+...||.++++.|+++||.|||-.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4888999999999864 33000 11111000 11100013689999999999999999874
No 132
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=45.13 E-value=81 Score=35.42 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=57.2
Q ss_pred eEEECCEEeEEEEEeecCCCC-ChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCC
Q psy12280 126 TFLLNGKEFRILSGSIHYFRV-RPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEED 204 (758)
Q Consensus 126 ~f~lnGkp~~i~sG~~Hy~R~-p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~G 204 (758)
+..+.|.++.++.| +-.+ .++.-.+..+.+|++|.+.++.|+|= |+---|.|.|.+ +.-|.-+.+.|++.|
T Consensus 86 ~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g-~~gL~~L~~~~~~~G 157 (335)
T PRK08673 86 DVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLG-EEGLKLLAEAREETG 157 (335)
T ss_pred CEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCccccccc-HHHHHHHHHHHHHcC
Confidence 35666778888888 2222 36777888889999999999999884 443346777631 245667778899999
Q ss_pred ceEEecC
Q psy12280 205 LFVIIRP 211 (758)
Q Consensus 205 L~VIlRp 211 (758)
|.++-.+
T Consensus 158 l~v~tev 164 (335)
T PRK08673 158 LPIVTEV 164 (335)
T ss_pred CcEEEee
Confidence 9999886
No 133
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=44.79 E-value=31 Score=33.89 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccc-CcCCCCC--CeeeeeCCCccccHHHHHHHHHHCCceEEecCCCcc
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAW-NLHEPLK--DVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYI 215 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~W-n~HEP~~--G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYI 215 (758)
.+..++.++.++++|+..|.+...+ ..+.... ..++.- ...|.++.+.|++.|+.+.++|-|+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~----~~~l~~l~~~a~~~gv~i~lE~~~~~ 136 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERL----AENLRELAEIAEEYGVRIALENHPGP 136 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHH----HHHHHHHHHHHHHHTSEEEEE-SSSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHH----HHHHHHHHhhhhhhcceEEEecccCc
Confidence 4577888999999999999886553 1222211 111111 24678888999999999999996543
No 134
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=44.72 E-value=94 Score=35.94 Aligned_cols=82 Identities=15% Similarity=0.194 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCCCEEEEecc----cCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCce--EEecCCCccccccCCCCC
Q psy12280 151 WRDRLRKLRAMGANTVETYIA----WNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLF--VIIRPGPYICAEWDFGGM 224 (758)
Q Consensus 151 W~drL~k~Ka~GlNtV~tYv~----Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~--VIlRpGPYIcAEw~~GGl 224 (758)
....++.+.+.|+|++++|+- |..-+..+ .++.+|.++|+++||. .++-=+||. .+
T Consensus 143 ~~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~-----------~~~~~f~~~~~~~gi~~~~i~~HapYl---IN---- 204 (413)
T PTZ00372 143 VDNSPINAYNIAGQAFALFLKNQRTWNSPPLSD-----------ETIDKFKENCKKYNYDPKFILPHGSYL---IN---- 204 (413)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCccCCCCCCCH-----------HHHHHHHHHHHHcCCCcceEEeecCce---ec----
Confidence 344788999999999999854 66555554 7899999999999884 243456774 11
Q ss_pred CcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhcc
Q psy12280 225 PSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPL 261 (758)
Q Consensus 225 P~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~ 261 (758)
+-+.++.-++...+.+.+-+.+.+.+
T Consensus 205 -----------LASpd~e~rekSv~~~~~eL~rA~~L 230 (413)
T PTZ00372 205 -----------LANPDKEKREKSYDAFLDDLQRCEQL 230 (413)
T ss_pred -----------CCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 23345666666555555555555443
No 135
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=42.67 E-value=38 Score=37.99 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=46.9
Q ss_pred eecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 140 SIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 140 ~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
+-++ |.|...=.-..+.++++|.++|.+.++|.-.++.+ -+-.- ..+|.++.+.|++.||-+++.+
T Consensus 98 t~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~---~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 98 TAPG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRK---HAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHH---HHHHHHHHHHHHHcCCceEEEE
Confidence 3455 76654444446779999999999999999653310 00011 2579999999999999999875
No 136
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.38 E-value=1.2e+02 Score=32.44 Aligned_cols=85 Identities=13% Similarity=0.149 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceE--EecCCCccccccCCCCCCcccc
Q psy12280 152 RDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFV--IIRPGPYICAEWDFGGMPSYLL 229 (758)
Q Consensus 152 ~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~V--IlRpGPYIcAEw~~GGlP~WL~ 229 (758)
.+.++.+++.|+++|+.++- .|+--....-. ..+..+|.+.++++++.+ +.-=+||. ++
T Consensus 14 ~~a~~~~~~~G~~~~qif~~----~P~~w~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~Hapy~---iN--------- 74 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLK----SPRWWRRPMLE---EEVIDWFKAALETNKNLSQIVLVHAPYL---IN--------- 74 (274)
T ss_pred HHHHHHHHHhCCCEEEEEec----CccccCCCCCC---HHHHHHHHHHHHHcCCCCcceeccCCee---ee---------
Confidence 56899999999999999653 22210001101 156788889999998863 33335664 21
Q ss_pred cCCCceeccCCHhHHHHHHHHHHHHHHHhhcc
Q psy12280 230 REPGIKLRSMDPKYLNRVRQYFNNLIPLLEPL 261 (758)
Q Consensus 230 ~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~ 261 (758)
+-+.|+.-++...+.+++.+..-+.+
T Consensus 75 ------las~~~~~r~~sv~~~~~~i~~A~~l 100 (274)
T TIGR00587 75 ------LASPDEEKEEKSLDVLDEELKRCELL 100 (274)
T ss_pred ------cCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 23346666666666666666555544
No 137
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=42.19 E-value=72 Score=34.10 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=32.1
Q ss_pred EECCEEeEEEEEeecCCCCC-hhhHHHHHHHHHHcCCCEEE
Q psy12280 128 LLNGKEFRILSGSIHYFRVR-PEYWRDRLRKLRAMGANTVE 167 (758)
Q Consensus 128 ~lnGkp~~i~sG~~Hy~R~p-~e~W~drL~k~Ka~GlNtV~ 167 (758)
.+.|+++..+.|.+|+.--. ..+-+--++.||++|+..|=
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii 87 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLI 87 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEE
Confidence 57899999999999986544 33447889999999998653
No 138
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=41.77 E-value=2.9e+02 Score=30.77 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=53.2
Q ss_pred ceEEECCEEeEEEEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecc----cCcCCCC------CCeeeee-----CCCc
Q psy12280 125 NTFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIA----WNLHEPL------KDVYEFG-----DNNK 189 (758)
Q Consensus 125 ~~f~lnGkp~~i~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~----Wn~HEP~------~G~fdF~-----g~~~ 189 (758)
++|+||=-| |++ |.+...+.|+.|...++|++..++- |.+.-+. .|.+.-. |.=+
T Consensus 4 RG~mlD~aR--------~f~--~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT 73 (329)
T cd06568 4 RGLMLDVAR--------HFF--TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYT 73 (329)
T ss_pred cceeeeccC--------CCc--CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCC
Confidence 556666433 544 8899999999999999999999874 5443211 2332210 0001
Q ss_pred cccHHHHHHHHHHCCceEEecC
Q psy12280 190 DIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 190 ~~DL~~Fl~la~e~GL~VIlRp 211 (758)
..|+.++++.|++.|+.||-..
T Consensus 74 ~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 74 QEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred HHHHHHHHHHHHHcCCEEEEec
Confidence 5799999999999999999653
No 139
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=41.72 E-value=1.3e+02 Score=34.37 Aligned_cols=139 Identities=14% Similarity=0.212 Sum_probs=70.4
Q ss_pred HHcCCCEEEEecc---------------cCcC---CCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccC
Q psy12280 159 RAMGANTVETYIA---------------WNLH---EPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWD 220 (758)
Q Consensus 159 Ka~GlNtV~tYv~---------------Wn~H---EP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~ 220 (758)
|.+|||.+|.-|= |-.- .+..|.|||+.. ..=+.|++.|++.|...++-.
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D---~gQrwfL~~Ak~rGV~~f~aF--------- 124 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDAD---AGQRWFLKAAKERGVNIFEAF--------- 124 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSS---HHHHHHHHHHHHTT---EEEE---------
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCC---HHHHHHHHHHHHcCCCeEEEe---------
Confidence 4578888876542 2111 245689999865 555679999999999877643
Q ss_pred CCCCCcccccCCCce----ec-cCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccC------C-C-C--
Q psy12280 221 FGGMPSYLLREPGIK----LR-SMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVL------G-P-N-- 285 (758)
Q Consensus 221 ~GGlP~WL~~~p~i~----~R-t~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~------~-~-y-- 285 (758)
.--.|.|+...-... .. .-.+...++...|+..+++.++. .| =+|=-+.-=||-... + | +
T Consensus 125 SNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~----~G-I~f~~IsP~NEP~~~W~~~~QEG~~~~~ 199 (384)
T PF14587_consen 125 SNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKK----WG-INFDYISPFNEPQWNWAGGSQEGCHFTN 199 (384)
T ss_dssp -SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHC----TT---EEEEE--S-TTS-GG--SS-B----H
T ss_pred ecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHh----cC-CccceeCCcCCCCCCCCCCCcCCCCCCH
Confidence 123677877642110 00 11245677777777778777743 23 345455555775321 0 1 2
Q ss_pred cchHHHHHHHHHHHHhcCCCcceEEcCCC
Q psy12280 286 VADKNYMRELVAMLRSNGIRSPLFTADDP 314 (758)
Q Consensus 286 ~~d~~Y~~~L~~~~~~~G~~vpl~T~dg~ 314 (758)
......++.|...+++.|++..+..++..
T Consensus 200 ~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~ 228 (384)
T PF14587_consen 200 EEQADVIRALDKALKKRGLSTKISACEAG 228 (384)
T ss_dssp HHHHHHHHHHHHHHHHHT-S-EEEEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEecchh
Confidence 23466788999999999999877666653
No 140
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=41.38 E-value=33 Score=34.36 Aligned_cols=50 Identities=30% Similarity=0.456 Sum_probs=31.4
Q ss_pred ceeeecCCceEEEEEECCeeceeeeccCC------ceEEEe---CccccCCCCcEEEEEE
Q psy12280 681 DTYLDMQDWTRGVVFVNGFNLGRYSRLSP------YQTLYL---PAPLLHLGQNKISVFE 731 (758)
Q Consensus 681 DTfLdm~gwgKG~v~VNG~nLGRYW~iGP------Q~tLYV---P~~~Lk~G~N~IvvfE 731 (758)
...|..++-++=.+||||..+|+-- +.| ...+|. =.++|++|+|.|.|.=
T Consensus 5 ~A~l~isa~g~Y~l~vNG~~V~~~~-l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~l 63 (172)
T PF08531_consen 5 SARLYISALGRYELYVNGERVGDGP-LAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWL 63 (172)
T ss_dssp --EEEEEEESEEEEEETTEEEEEE---------BTTEEEEEEEE-TTT--TTEEEEEEEE
T ss_pred EEEEEEEeCeeEEEEECCEEeeCCc-cccccccCCCceEEEEEeChHHhCCCCCEEEEEE
Confidence 4467777778899999999999743 333 334442 2468999999988753
No 141
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=40.80 E-value=3.5e+02 Score=28.18 Aligned_cols=49 Identities=18% Similarity=0.362 Sum_probs=35.5
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEE
Q psy12280 144 FRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVI 208 (758)
Q Consensus 144 ~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VI 208 (758)
|+.|++ .++.|+++|++++.+ - ---+|||.- .-|.+.++.+++.|+..+
T Consensus 59 f~~~~~----~~~~l~~~G~d~~~l-----a---NNH~fD~G~----~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 59 FRAPPE----NAAALKAAGFDVVSL-----A---NNHSLDYGE----EGLLDTLAALDAAGIAHV 107 (239)
T ss_pred ecCCHH----HHHHHHHhCCCEEEe-----c---cCcccccch----HHHHHHHHHHHHCCCCEe
Confidence 566654 578999999999998 1 112467764 357888888888998765
No 142
>PRK09875 putative hydrolase; Provisional
Probab=40.40 E-value=3e+02 Score=30.28 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcc
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSY 227 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~W 227 (758)
.+.-...|+.+|++|.+||-- ..+- +. | ||...+.+++++-|+.||...|-|.-.. +|.|
T Consensus 33 ~~~~~~el~~~~~~Gg~tiVd--------~T~~--g~-G----Rd~~~l~~is~~tgv~Iv~~TG~y~~~~-----~p~~ 92 (292)
T PRK09875 33 YAFICQEMNDLMTRGVRNVIE--------MTNR--YM-G----RNAQFMLDVMRETGINVVACTGYYQDAF-----FPEH 92 (292)
T ss_pred HHHHHHHHHHHHHhCCCeEEe--------cCCC--cc-C----cCHHHHHHHHHHhCCcEEEcCcCCCCcc-----CCHH
Confidence 455667888999999998844 2220 11 3 8999999999999999999999986432 5778
Q ss_pred ccc
Q psy12280 228 LLR 230 (758)
Q Consensus 228 L~~ 230 (758)
+..
T Consensus 93 ~~~ 95 (292)
T PRK09875 93 VAT 95 (292)
T ss_pred Hhc
Confidence 774
No 143
>PLN02784 alpha-amylase
Probab=40.09 E-value=59 Score=40.82 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCCEEEEecccCcCCCCCC--eeeeeCC----CccccHHHHHHHHHHCCceEEecC
Q psy12280 152 RDRLRKLRAMGANTVETYIAWNLHEPLKD--VYEFGDN----NKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 152 ~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G--~fdF~g~----~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
.++|..++++|+++|-..=+.....+ -| .+||-.. ++..||..+++.|+++||.||+-.
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~-~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSP-EGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCC-CCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 56788889999999987533221111 11 1232111 115799999999999999999764
No 144
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=39.85 E-value=3.9e+02 Score=30.71 Aligned_cols=117 Identities=13% Similarity=0.166 Sum_probs=69.5
Q ss_pred ecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCC--CeeeeeCCCc--cccHHHHHHHHHHCCceEEecCCCccc
Q psy12280 141 IHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLK--DVYEFGDNNK--DIDFVKFIKIAQEEDLFVIIRPGPYIC 216 (758)
Q Consensus 141 ~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~--G~fdF~g~~~--~~DL~~Fl~la~e~GL~VIlRpGPYIc 216 (758)
-.|+.+..+.-.+.+++++++|++.+-+=--|.-..... +.=||.-+.. ..-|..+.+.++++||..=|...|-.+
T Consensus 50 ~~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 50 AYYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp HHTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred ccCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccc
Confidence 356778888899999999999999777665686542221 1112322111 234899999999999998888777654
Q ss_pred cccC--CCCCCcccccCCCce---------eccCCHhHHHHHHHHHHHHHHH
Q psy12280 217 AEWD--FGGMPSYLLREPGIK---------LRSMDPKYLNRVRQYFNNLIPL 257 (758)
Q Consensus 217 AEw~--~GGlP~WL~~~p~i~---------~Rt~dp~y~~~v~~w~~~l~~~ 257 (758)
++=. .-..|.|+...++-. +-.++|...+++...+.+++..
T Consensus 130 ~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~ 181 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLRE 181 (394)
T ss_dssp ESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHh
Confidence 3221 224799998764421 2235666666665555554443
No 145
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=39.50 E-value=34 Score=38.92 Aligned_cols=55 Identities=24% Similarity=0.364 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCCEEEEe-cc---cCcCCCCCCee-----eeeCCCccccHHHHHHHHHHCCceEEec
Q psy12280 153 DRLRKLRAMGANTVETY-IA---WNLHEPLKDVY-----EFGDNNKDIDFVKFIKIAQEEDLFVIIR 210 (758)
Q Consensus 153 drL~k~Ka~GlNtV~tY-v~---Wn~HEP~~G~f-----dF~g~~~~~DL~~Fl~la~e~GL~VIlR 210 (758)
++|.-+|.+|+++|=+= ++ -..|.--.-.| .|.+. .|+.++++.|++.||+||+-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~---~d~~~li~~~H~~gi~vi~D 96 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTE---EDFKELVEEAHKRGIKVILD 96 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCH---HHHHHHHHHHHHCCCEEEEE
Confidence 78999999999999531 11 11221110000 46665 89999999999999999975
No 146
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=38.79 E-value=3.8e+02 Score=29.95 Aligned_cols=68 Identities=16% Similarity=0.217 Sum_probs=47.9
Q ss_pred cCCCCChhhHHHHHHHHHHcCCCEEEEecc----cCcCCCC------CCeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 142 HYFRVRPEYWRDRLRKLRAMGANTVETYIA----WNLHEPL------KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 142 Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~----Wn~HEP~------~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
|+ .|.+..++.|+.|-...+|++..++- |-+--+. .|.|.=+|.=+..|+..+++.|++.|+.||-+.
T Consensus 13 ~f--~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 13 HF--LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred cC--CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEec
Confidence 55 46899999999999999999998753 5443221 233221111114799999999999999999653
No 147
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=37.42 E-value=55 Score=34.97 Aligned_cols=49 Identities=29% Similarity=0.264 Sum_probs=37.7
Q ss_pred HHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCC
Q psy12280 155 LRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPG 212 (758)
Q Consensus 155 L~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpG 212 (758)
.+++|++|++.|-+ -|..++--|.-+. .++.+=++.|.++||.+|++.|
T Consensus 77 ~~mL~d~G~~~vii-----GHSERR~~f~Et~----~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 77 AEMLKDAGAKYVII-----GHSERRQYFGETD----EDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHHcCCCEEEe-----CcccccCcCCCCc----HHHHHHHHHHHHCCCEEEEEeC
Confidence 45899999999999 4444443343332 6888889999999999999975
No 148
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=37.34 E-value=1.4e+02 Score=32.21 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=71.5
Q ss_pred HHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccc-----------------
Q psy12280 154 RLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYIC----------------- 216 (758)
Q Consensus 154 rL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIc----------------- 216 (758)
-.+++|++|++.|-+ ++-|.+ -.|.=+ + ..+.+=++.|.++||.+|++.|=-.-
T Consensus 78 S~~mLkd~G~~~vii----GHSERR-~~f~Et-d---~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~ 148 (250)
T PRK00042 78 SAEMLKDLGVKYVII----GHSERR-QYFGET-D---ELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEA 148 (250)
T ss_pred CHHHHHHCCCCEEEe----Cccccc-CccCcC-H---HHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHH
Confidence 346899999999999 444444 333211 1 33444445599999999999773210
Q ss_pred -------cccCCCCC---CcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCCCCc
Q psy12280 217 -------AEWDFGGM---PSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNV 286 (758)
Q Consensus 217 -------AEw~~GGl---P~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~~y~ 286 (758)
++|..==+ |.|.-.- -++.+|...+.+.+.++..+..+-. ...+. -+|+ ||.. -.
T Consensus 149 ~l~~~~~~~~~~~vIAYEPvWAIGt----G~~as~~~~~~v~~~Ir~~l~~~~~-~~~~~-~~Il-------YGGS--V~ 213 (250)
T PRK00042 149 ALAGLSAEQFANLVIAYEPVWAIGT----GKTATPEQAQEVHAFIRAVLAELYG-EVAEK-VRIL-------YGGS--VK 213 (250)
T ss_pred HHccCCHHHhCCEEEEECCHHHhCC----CCCCCHHHHHHHHHHHHHHHHHhcc-cccCC-ceEE-------EcCC--CC
Confidence 00111012 6666431 2457888999999888887654432 22222 3444 7652 11
Q ss_pred chHHHHHHHHHHHHhcCCCcceE
Q psy12280 287 ADKNYMRELVAMLRSNGIRSPLF 309 (758)
Q Consensus 287 ~d~~Y~~~L~~~~~~~G~~vpl~ 309 (758)
-....+++...+++-.|.
T Consensus 214 -----~~N~~~l~~~~~vDG~LV 231 (250)
T PRK00042 214 -----PDNAAELMAQPDIDGALV 231 (250)
T ss_pred -----HHHHHHHhcCCCCCEEEE
Confidence 133445566667765444
No 149
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=36.15 E-value=72 Score=33.90 Aligned_cols=46 Identities=15% Similarity=0.400 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 151 WRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 151 W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
-+..++++|+||.+.|-.| ...|-.+.-.+...-+.|.++|++ |+|
T Consensus 137 vetAiaml~dmG~~SiKff-------------PM~Gl~~leE~~avA~aca~~g~~--lEP 182 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFF-------------PMGGLKHLEEYAAVAKACAKHGFY--LEP 182 (236)
T ss_pred HHHHHHHHHHcCCCeeeEe-------------ecCCcccHHHHHHHHHHHHHcCCc--cCC
Confidence 4678999999999999873 334442234467778999999997 487
No 150
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=35.40 E-value=86 Score=34.49 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=48.5
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCC--eeeeeCCCccccHHHHHHHHHHCCceEEecCCCccc
Q psy12280 147 RPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKD--VYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYIC 216 (758)
Q Consensus 147 p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G--~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIc 216 (758)
..+.-++.++++++.|+-+=.+.+=|.+.. ..+ .|.|+-. ..-|..++++..+++|++|++-.=|||+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~-~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPE-RFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChh-hCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 356678899999999888755555454433 234 5655531 1459999999999999999987666664
No 151
>KOG0626|consensus
Probab=35.20 E-value=67 Score=38.08 Aligned_cols=113 Identities=12% Similarity=0.228 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHcCCCEEEEecccCcCCCCC---CeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCc
Q psy12280 150 YWRDRLRKLRAMGANTVETYIAWNLHEPLK---DVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPS 226 (758)
Q Consensus 150 ~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~---G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~ 226 (758)
.+.++++.||++|+++-|.-|-|+..=|.- +..+-.|. .=...+|+...++|+..++-. | =|+ +|.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi---~fY~~LI~eL~~nGI~P~VTL--f---HwD---lPq 160 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGI---QFYNNLIDELLANGIEPFVTL--F---HWD---LPQ 160 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHH---HHHHHHHHHHHHcCCeEEEEE--e---cCC---CCH
Confidence 578899999999999999999999887752 34566664 444567888888999866543 1 254 788
Q ss_pred ccccC-CCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEec
Q psy12280 227 YLLRE-PGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLG 274 (758)
Q Consensus 227 WL~~~-p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQ 274 (758)
||-+. -+-.-+..=.+|+++.+-=|++...+++-+---|. +.|+.++
T Consensus 161 ~LeDeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~WiT~NE-P~v~s~~ 208 (524)
T KOG0626|consen 161 ALEDEYGGWLNPEIVEDFRDYADLCFQEFGDRVKHWITFNE-PNVFSIG 208 (524)
T ss_pred HHHHHhccccCHHHHHHHHHHHHHHHHHhcccceeeEEecc-cceeeee
Confidence 88763 22211222345777777777888888877655566 6666554
No 152
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=35.03 E-value=2.7e+02 Score=30.46 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=46.4
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEecc----cCcCCCC------CCee----eeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 146 VRPEYWRDRLRKLRAMGANTVETYIA----WNLHEPL------KDVY----EFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 146 ~p~e~W~drL~k~Ka~GlNtV~tYv~----Wn~HEP~------~G~f----dF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
.+.+...+.|+.|...++|.+..++- |.+--+. .|.. .-.|.=++.|+.++++.|+++|+.||-..
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPEi 92 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPEI 92 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEec
Confidence 46788999999999999999999877 7443211 1210 00010014799999999999999999553
No 153
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=33.96 E-value=43 Score=35.97 Aligned_cols=51 Identities=18% Similarity=0.295 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCCCC--CeeeeeCCCccccHHHHHHHHHHCCce
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEPLK--DVYEFGDNNKDIDFVKFIKIAQEEDLF 206 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~--G~fdF~g~~~~~DL~~Fl~la~e~GL~ 206 (758)
.-.|++||..+|++||.-|+. +..|.-+ -..||+- .-.-.+..++++.|+.
T Consensus 17 ~~sW~erl~~AK~~GFDFvEm----SvDEsDeRLaRLDWs~----~er~~l~~ai~etgv~ 69 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEM----SVDESDERLARLDWSK----EERLALVNAIQETGVR 69 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEE----eccchHHHHHhcCCCH----HHHHHHHHHHHHhCCC
Confidence 456999999999999999999 6666543 4577775 3456778899999984
No 154
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=33.80 E-value=72 Score=41.25 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=19.1
Q ss_pred ccHHHHHHHHHHCCceEEecC
Q psy12280 191 IDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 191 ~DL~~Fl~la~e~GL~VIlRp 211 (758)
.+|.++++.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 579999999999999999874
No 155
>PRK14565 triosephosphate isomerase; Provisional
Probab=33.64 E-value=1.3e+02 Score=32.29 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=55.5
Q ss_pred HHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCC----------
Q psy12280 155 LRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGM---------- 224 (758)
Q Consensus 155 L~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGl---------- 224 (758)
.+++|++|++.|-+ ++-|.+. . |.-. ...+.+=++.|.++||.+|++.|=.. .|-+.|-.
T Consensus 78 ~~mLkd~G~~~vii----GHSERR~-~--f~Et--d~~V~~Kv~~al~~gl~pIvCiGE~~-e~r~~~~~~~~~~~Ql~~ 147 (237)
T PRK14565 78 AKMLKECGCSYVIL----GHSERRS-T--FHET--DSDIRLKAESAIESGLIPIICVGETL-EDRENGMTKDVLLEQCSN 147 (237)
T ss_pred HHHHHHcCCCEEEE----CcccccC-c--CCcC--HHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHccChHHHHHHHHHH
Confidence 46899999999999 4545542 2 3221 02222333899999999999988432 11222321
Q ss_pred -------------CcccccCCCceeccCCHhHHHHHHHHHHHH
Q psy12280 225 -------------PSYLLREPGIKLRSMDPKYLNRVRQYFNNL 254 (758)
Q Consensus 225 -------------P~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l 254 (758)
|.|.-.. -++.+|.+.+.+.++++++
T Consensus 148 ~l~~~~~ivIAYEPvWAIGt----G~~a~~e~i~~~~~~Ir~~ 186 (237)
T PRK14565 148 CLPKHGEFIIAYEPVWAIGG----STIPSNDAIAEAFEIIRSY 186 (237)
T ss_pred HhcCCCCEEEEECCHHHhCC----CCCCCHHHHHHHHHHHHHh
Confidence 6666542 2478999999999888875
No 156
>KOG2566|consensus
Probab=32.87 E-value=8.4e+02 Score=28.45 Aligned_cols=240 Identities=17% Similarity=0.225 Sum_probs=131.3
Q ss_pred eEEECC----EEeEEEEEeecCCC------CChhhHHHHHHHH---HHcCCCEEEEecc---cCcCCCCC-C-eeeeeCC
Q psy12280 126 TFLLNG----KEFRILSGSIHYFR------VRPEYWRDRLRKL---RAMGANTVETYIA---WNLHEPLK-D-VYEFGDN 187 (758)
Q Consensus 126 ~f~lnG----kp~~i~sG~~Hy~R------~p~e~W~drL~k~---Ka~GlNtV~tYv~---Wn~HEP~~-G-~fdF~g~ 187 (758)
.+.||- ++++-+||++--+. +|+.+=.-.|+.. ..+|+|..|+.+. .+.||..= + ..||+-.
T Consensus 88 ~~tidssq~fQ~i~GFG~aftDaag~n~ksL~~~~q~~il~~YFsd~Gl~y~~gRVPiAS~DFS~r~YsYdDv~~Df~l~ 167 (518)
T KOG2566|consen 88 HLTIDSSQKFQTIQGFGGAFTDAAGANLKSLSDTLQNLILKSYFSDEGLGYNIGRVPIASCDFSTREYSYDDVPDDFQLK 167 (518)
T ss_pred EEEEcchhhceeeeccccccccccccchhhCCHHHHHHHHHHhhcccCccceeeeeeecccccccceeeccCCccccccc
Confidence 345554 56777888876633 3333333333332 3467778888776 56666531 1 1344321
Q ss_pred C-c--cccHH---HHHHHHHHC---CceEEecCCCccccccCCCCCCcccccCCCce----ec-cCCHhHHHHHHHHHHH
Q psy12280 188 N-K--DIDFV---KFIKIAQEE---DLFVIIRPGPYICAEWDFGGMPSYLLREPGIK----LR-SMDPKYLNRVRQYFNN 253 (758)
Q Consensus 188 ~-~--~~DL~---~Fl~la~e~---GL~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~----~R-t~dp~y~~~v~~w~~~ 253 (758)
. + +-|+. -||+.|++. .|....-| |. -|.||.....|+ ++ .....|.+...+||-+
T Consensus 168 nF~L~~ED~q~KIP~ik~A~~~~~~~lklfAsP-------Ws---aPgWlKttg~m~G~G~l~g~~~d~yhqtya~Yfvk 237 (518)
T KOG2566|consen 168 NFSLPEEDLKLKIPFIKKAQKYNQGNLKLFASP-------WS---APGWLKTTGRMNGKGALLGDPGDIYHQTYARYFVK 237 (518)
T ss_pred ccCCchhhheeecHHHHHHHHhcCCCceEEecC-------CC---CCceeeecccccccccccCCCCchhHHHHHHHHHH
Confidence 0 0 22332 589999875 46667666 76 588998753332 22 3445788888888888
Q ss_pred HHHHhhccccccCCCCEEEecccccccc--CCC-------C--cchHHHHHHHHHH-HHh--cCCCcceEEcCCCC-CCC
Q psy12280 254 LIPLLEPLQFIDGQGPIIMLGVENELAV--LGP-------N--VADKNYMRELVAM-LRS--NGIRSPLFTADDPS-MGD 318 (758)
Q Consensus 254 l~~~l~~~~~~nG~GpIImvQIENEyg~--~~~-------y--~~d~~Y~~~L~~~-~~~--~G~~vpl~T~dg~~-~~~ 318 (758)
.++.++++-+ .-=++-.+||--. ... | ...+++++....= +++ .+-++-+...|... .++
T Consensus 238 FleaY~~~gi-----~FWglt~qNEPstG~d~~~k~Qtl~ftae~qRdFik~dLGPaLa~s~~~knvkllilDD~Rg~LP 312 (518)
T KOG2566|consen 238 FLEAYAKHGI-----QFWGLTTQNEPSTGSDKKWKWQTLGFTAETQRDFIKKDLGPALASSKTTKNVKLLILDDQRGLLP 312 (518)
T ss_pred HHHHHHhcCc-----eEEeecccCCCCcCcccCCceeecccCHHHHHHHHHHhcchhhhcCCcCCceEEEEecCCccCCC
Confidence 8888876422 3345667899632 111 1 1233333332211 222 35566666666543 121
Q ss_pred C--CCC---------ccc--ceeecccCChHHHHHHhhhcCCCCCceeeecccccccccCCCCC-CCCChHHHHHHH
Q psy12280 319 S--GSL---------IED--VLYAANILYAGEELRKLSYMQPNKPLMVMEWWTGWFDTWAKNRH-NTFPTNEYEMTL 381 (758)
Q Consensus 319 ~--G~~---------~~~--vl~t~nf~~~~~~f~~~~~~~P~~P~~~sEf~~GWf~~WG~~~~-~~~~~~~~~~~l 381 (758)
. .+. +.| |-.--||.........-++.+|+.-++.+|--.|.+.+=|- .. .--.+++++..+
T Consensus 313 ~WadtvlnDpeAakYv~GIaVHwY~df~~pa~~L~eTh~~hP~~fifgTEAc~Gy~~~d~v-~~Gswdrae~yasdi 388 (518)
T KOG2566|consen 313 HWADTVLNDPEAAKYVHGIAVHWYQDFLEPAKHLDETHRKHPNTFIFGTEACAGYKSKDGV-DLGSWDRAEQYASDI 388 (518)
T ss_pred ccchhhccChhhhhhccceEEEeeccccChhhhhhhHHhhCCCeEEEeehhccccccccCc-cccchhhHHHHHHHH
Confidence 1 000 111 11233565566677778889999999999998886644331 11 112256666543
No 157
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=32.48 E-value=50 Score=34.79 Aligned_cols=59 Identities=10% Similarity=0.016 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEecccCcCCCCC-CeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 149 EYWRDRLRKLRAMGANTVETYIAWNLHEPLK-DVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 149 e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~-G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
+.+++.++.++++|++.|.+.-.-...++.. -.++.. -..|.++.++|+++|+.+.+++
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~----~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRF----IEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHH----HHHHHHHHHHHHHhCCEEEEEe
Confidence 5578889999999999998621100001110 001111 1357888999999999999997
No 158
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=32.03 E-value=7.4e+02 Score=31.13 Aligned_cols=172 Identities=16% Similarity=0.151 Sum_probs=87.9
Q ss_pred eeCCCc-cccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccc
Q psy12280 184 FGDNNK-DIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQ 262 (758)
Q Consensus 184 F~g~~~-~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~ 262 (758)
|+++.. .-|.+.+++-.++.|+.+|+-.=|||+.+- +.|.+..+ +.+.
T Consensus 313 F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~---------------------~~~~e~~~----------~Gy~ 361 (772)
T COG1501 313 FTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDS---------------------PLFKEAIE----------KGYF 361 (772)
T ss_pred eEECcccCCCHHHHHHHHHhcCceEEEEeccccccCC---------------------chHHHHHH----------CCeE
Confidence 554433 568899999999999999988877775332 22322222 2233
Q ss_pred cccCCCCEEEeccccccccCCCC--cchHHHHH-HHHHHHHhcCCCcceEEcCCCC-CCCCCC-C--cccceeecccCC-
Q psy12280 263 FIDGQGPIIMLGVENELAVLGPN--VADKNYMR-ELVAMLRSNGIRSPLFTADDPS-MGDSGS-L--IEDVLYAANILY- 334 (758)
Q Consensus 263 ~~nG~GpIImvQIENEyg~~~~y--~~d~~Y~~-~L~~~~~~~G~~vpl~T~dg~~-~~~~G~-~--~~~vl~t~nf~~- 334 (758)
++...|.+.-++.==..+..-+| .+.+++-. ...+.+.+.|++ -|=+|... ...++. . .-.....-|+.+
T Consensus 362 ~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~--g~W~D~nEp~~~~~~~~~~g~~~~~~~N~yp~ 439 (772)
T COG1501 362 VKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGVD--GFWNDMNEPEPFDGDGFGNGIDHEEMHNLYPL 439 (772)
T ss_pred EECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCcc--EEEccCCCCccccccccccccCHHHHhcchhH
Confidence 33221344444432222221123 23344443 344556677776 23334322 111100 0 001112334443
Q ss_pred --hHHHHHHhhhcCCC-CCceeee-ccccc---ccccCCCCCCCCChHHHHHHHHHHHhCCce
Q psy12280 335 --AGEELRKLSYMQPN-KPLMVME-WWTGW---FDTWAKNRHNTFPTNEYEMTLQSLLEYPVS 390 (758)
Q Consensus 335 --~~~~f~~~~~~~P~-~P~~~sE-f~~GW---f~~WG~~~~~~~~~~~~~~~l~~~l~~G~s 390 (758)
....|+.+++..|+ +|++.+= .|+|- -.+|++ -...+-+.++..+..+|..+.|
T Consensus 440 ~~~~a~~~~~~~~~~~~r~~~lsRsg~aG~Q~~~~~WsG--D~~s~wd~l~~si~~~Ls~~~s 500 (772)
T COG1501 440 LYAKAVYEALKELGGNERPFILSRSGYAGSQRYAAHWSG--DNRSSWDSLRESIPAGLSLSLS 500 (772)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEecccccceeccceeCC--ccccchHHHHhhHHhhhchhcc
Confidence 55677888887554 6776655 34553 345765 2224457777777777766654
No 159
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=31.72 E-value=85 Score=33.39 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCc----ccc---HHHH--HHHHHHCCceEEecCCCccc
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNK----DID---FVKF--IKIAQEEDLFVIIRPGPYIC 216 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~----~~D---L~~F--l~la~e~GL~VIlRpGPYIc 216 (758)
.+..++.++.+.++|++.-.. +||-.||+|...-.-. -.| +.++ =++|+++|+.+..-|=|+..
T Consensus 68 ~~~~~~i~~~l~~~Gi~ve~~-----h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~~ 140 (259)
T PF00120_consen 68 EDFLEEIVDALEQAGIPVEQI-----HHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFSG 140 (259)
T ss_dssp HHHHHHHHHHHHHCT--EEEE-----EEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSSTT
T ss_pred HHHHHHHHHHHHHhhcccccc-----ccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccCC
Confidence 677889999999999998888 9999999987763211 111 1121 27889999999999988653
No 160
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=31.34 E-value=1.2e+02 Score=28.53 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=32.2
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEE
Q psy12280 145 RVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVI 208 (758)
Q Consensus 145 R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VI 208 (758)
-+|++...+.++.+++.|+..|=.. +| + .-++.+++|+++||.++
T Consensus 62 ~~~~~~~~~~v~~~~~~g~~~v~~~---------~g----~------~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 62 CVPPDKVPEIVDEAAALGVKAVWLQ---------PG----A------ESEELIEAAREAGIRVI 106 (116)
T ss_dssp -S-HHHHHHHHHHHHHHT-SEEEE----------TT----S--------HHHHHHHHHTT-EEE
T ss_pred EcCHHHHHHHHHHHHHcCCCEEEEE---------cc----h------HHHHHHHHHHHcCCEEE
Confidence 3689999999999999998877651 11 2 23788999999999976
No 161
>PLN03036 glutamine synthetase; Provisional
Probab=31.09 E-value=1.7e+02 Score=34.11 Aligned_cols=67 Identities=18% Similarity=0.333 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCC-Cc------cccHHHHH--HHHHHCCceEEecCCCccccccCC
Q psy12280 151 WRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDN-NK------DIDFVKFI--KIAQEEDLFVIIRPGPYICAEWDF 221 (758)
Q Consensus 151 W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~-~~------~~DL~~Fl--~la~e~GL~VIlRpGPYIcAEw~~ 221 (758)
-++..+.+.++|++.-.+ .||-.||+|.|.-. .+ ..-+-+++ ++|+++|+.+-.-|=|+. ++|..
T Consensus 232 ~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~-gd~~G 305 (432)
T PLN03036 232 SDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE-GDWNG 305 (432)
T ss_pred HHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC-CCcCC
Confidence 344556789999999998 99999999988732 11 11122322 789999999999998853 56766
Q ss_pred CC
Q psy12280 222 GG 223 (758)
Q Consensus 222 GG 223 (758)
-|
T Consensus 306 SG 307 (432)
T PLN03036 306 AG 307 (432)
T ss_pred CC
Confidence 55
No 162
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=30.86 E-value=81 Score=33.16 Aligned_cols=46 Identities=13% Similarity=0.295 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 151 WRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 151 W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
-+..+.++|+||.+.|..| -..|..+.-.|...-+.|.++|+++ +|
T Consensus 137 vetAiaml~dmG~~SiKff-------------Pm~Gl~~leE~~avAkA~a~~g~~l--EP 182 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFF-------------PMGGLKHLEELKAVAKACARNGFTL--EP 182 (218)
T ss_dssp HHHHHHHHHHTT--EEEE----------------TTTTTHHHHHHHHHHHHHCT-EE--EE
T ss_pred HHHHHHHHHHcCCCeeeEe-------------ecCCcccHHHHHHHHHHHHHcCcee--CC
Confidence 4668999999999999983 3344422334667778999999998 77
No 163
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.23 E-value=5.1e+02 Score=29.05 Aligned_cols=68 Identities=10% Similarity=0.127 Sum_probs=46.6
Q ss_pred cCCCCChhhHHHHHHHHHHcCCCEEEEecc----cCcCCC---C---CCeeee-----------e-----CCCccccHHH
Q psy12280 142 HYFRVRPEYWRDRLRKLRAMGANTVETYIA----WNLHEP---L---KDVYEF-----------G-----DNNKDIDFVK 195 (758)
Q Consensus 142 Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~----Wn~HEP---~---~G~fdF-----------~-----g~~~~~DL~~ 195 (758)
|+ .|.+...+.|..|...++|++..++- |-+--+ + .|.|.= . |.=++.|++.
T Consensus 13 ~f--~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~e 90 (357)
T cd06563 13 HF--FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIRE 90 (357)
T ss_pred cC--cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHH
Confidence 55 47899999999999999999998763 422111 0 122210 0 0001479999
Q ss_pred HHHHHHHCCceEEecC
Q psy12280 196 FIKIAQEEDLFVIIRP 211 (758)
Q Consensus 196 Fl~la~e~GL~VIlRp 211 (758)
+++.|+++|+.||-..
T Consensus 91 iv~yA~~rgI~VIPEI 106 (357)
T cd06563 91 IVAYAAERGITVIPEI 106 (357)
T ss_pred HHHHHHHcCCEEEEec
Confidence 9999999999999653
No 164
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=30.23 E-value=81 Score=31.97 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=54.1
Q ss_pred EeecCCCCC-----hhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCC
Q psy12280 139 GSIHYFRVR-----PEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGP 213 (758)
Q Consensus 139 G~~Hy~R~p-----~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGP 213 (758)
|.+||+|.. .++.+.-++.++..+... ...|--.|..++.+.-+.......+.+|++..+++|..+++-.++
T Consensus 56 G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~~ 132 (196)
T cd06416 56 DVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSSQ 132 (196)
T ss_pred ceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 999998643 667788888888865432 111223333223221110000235778999999999999999888
Q ss_pred ccc----ccc---CCCCCCcccccC
Q psy12280 214 YIC----AEW---DFGGMPSYLLRE 231 (758)
Q Consensus 214 YIc----AEw---~~GGlP~WL~~~ 231 (758)
+-. +-. .+..+|-|+..-
T Consensus 133 ~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 133 YDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred chhccccCCCcCCCcCCCceEecCC
Confidence 521 111 145788998764
No 165
>KOG1412|consensus
Probab=30.17 E-value=1.1e+02 Score=34.40 Aligned_cols=128 Identities=23% Similarity=0.339 Sum_probs=77.4
Q ss_pred cccceeccccCCCCcccccCCcccCCcccccccccCCCCCCceEeEEEeeeeccceeeeEeecCCCceEEECCEEeEEEE
Q psy12280 59 KLDLKISESNVNNPADVDINGLPVTTDSEILMTSSEDGGSPIITNYIYYEFEKNKENTGLQYDDNPNTFLLNGKEFRILS 138 (758)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~d~~~~~f~lnGkp~~i~s 138 (758)
|...||.+.+--|-.-.+|-|+|--+..++.+--..| +|.+ ...|.++|+--+ |.--+-++
T Consensus 55 ~~e~~i~~d~s~NHEYLpi~Gl~~F~~~A~el~lg~~--s~a~---------kE~Rv~~vQsls--------GTGAl~~~ 115 (410)
T KOG1412|consen 55 KAEKKIANDQSLNHEYLPILGLPTFTKAATELLLGAD--SPAI---------KEDRVFGVQSLS--------GTGALRIA 115 (410)
T ss_pred hhhhhccCchhccchhccccCchhhhhhhHHHhcCCC--chhh---------hhccccceeecc--------ccchhhhh
Confidence 3445565555566667788888876654443332222 3322 345666664321 21111111
Q ss_pred Eee-------cCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHC--CceEEe
Q psy12280 139 GSI-------HYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEE--DLFVII 209 (758)
Q Consensus 139 G~~-------Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~--GL~VIl 209 (758)
+++ |---+....|+.--...+.+||-+|++|-+|+..+.. .|+..||.-.+.. |--+||
T Consensus 116 A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~------------~d~e~~Lsdl~~APe~si~iL 183 (410)
T KOG1412|consen 116 ADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKC------------VDLEGFLSDLESAPEGSIIIL 183 (410)
T ss_pred HHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCce------------ecHHHHHHHHhhCCCCcEEee
Confidence 111 1122345679999999999999999999999988766 7889999887775 444445
Q ss_pred cCCCccccccCC
Q psy12280 210 RPGPYICAEWDF 221 (758)
Q Consensus 210 RpGPYIcAEw~~ 221 (758)
.. ||-=..
T Consensus 184 ha----CAhNPT 191 (410)
T KOG1412|consen 184 HA----CAHNPT 191 (410)
T ss_pred ec----cccCCC
Confidence 53 654443
No 166
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.12 E-value=1.2e+02 Score=24.15 Aligned_cols=55 Identities=24% Similarity=0.248 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceE
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFV 207 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~V 207 (758)
|..-.+.+.-+.+.|+|.++++. +..+......+-|.-. +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve----~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE----DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC----CHHHHHHHHHHCCceE
Confidence 44567788899999999998875 3333234556677653 4789999999999865
No 167
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=30.09 E-value=83 Score=39.81 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHHCCceEEecC
Q psy12280 191 IDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 191 ~DL~~Fl~la~e~GL~VIlRp 211 (758)
.+++++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999874
No 168
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=29.59 E-value=1e+02 Score=30.91 Aligned_cols=44 Identities=20% Similarity=0.093 Sum_probs=34.7
Q ss_pred HHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEec-CCC
Q psy12280 154 RLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIR-PGP 213 (758)
Q Consensus 154 rL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlR-pGP 213 (758)
.+++++++|.+.|.+ +.|+.+ ..+.++++.|+++|+.+++- ++|
T Consensus 69 ~~~~~~~aGad~i~~-----h~~~~~-----------~~~~~~i~~~~~~g~~~~v~~~~~ 113 (202)
T cd04726 69 EAEMAFKAGADIVTV-----LGAAPL-----------STIKKAVKAAKKYGKEVQVDLIGV 113 (202)
T ss_pred HHHHHHhcCCCEEEE-----EeeCCH-----------HHHHHHHHHHHHcCCeEEEEEeCC
Confidence 458899999999998 445432 35788999999999999875 655
No 169
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.52 E-value=33 Score=35.33 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=42.2
Q ss_pred EEEEEeecCCCCC---hhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCe--eeeeCCCccccHHHHHHHHHHCCceEEe
Q psy12280 135 RILSGSIHYFRVR---PEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDV--YEFGDNNKDIDFVKFIKIAQEEDLFVII 209 (758)
Q Consensus 135 ~i~sG~~Hy~R~p---~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~--fdF~g~~~~~DL~~Fl~la~e~GL~VIl 209 (758)
..-+|--.|.|+- |-.-+ +-+.++|+..+-. -.--..|+ |||-.. -+|..|.++|+++||.+-|
T Consensus 117 VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMv-----DTaiKDGkslFdfm~~---e~l~eFvd~Ah~hGL~~Al 185 (235)
T COG1891 117 VVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMV-----DTAIKDGKSLFDFMDE---EELEEFVDLAHEHGLEVAL 185 (235)
T ss_pred EEeccccchhhccCcCccccH---HHHHhcCCCEEEE-----ecccccchhHHhhhcH---HHHHHHHHHHHHcchHHHh
Confidence 3445555555654 22222 3467788886544 22234454 888765 7899999999999998876
Q ss_pred c
Q psy12280 210 R 210 (758)
Q Consensus 210 R 210 (758)
-
T Consensus 186 A 186 (235)
T COG1891 186 A 186 (235)
T ss_pred c
Confidence 5
No 170
>PLN02877 alpha-amylase/limit dextrinase
Probab=29.30 E-value=98 Score=39.47 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=18.8
Q ss_pred ccHHHHHHHHHHCCceEEecC
Q psy12280 191 IDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 191 ~DL~~Fl~la~e~GL~VIlRp 211 (758)
++++++++.|+++||.||+--
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 469999999999999999874
No 171
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.28 E-value=1.4e+02 Score=32.75 Aligned_cols=70 Identities=13% Similarity=0.061 Sum_probs=49.0
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecccCcCCCC--CCee-eeeCCCc-cccHHHHHHHHHHCCceEEecCCCccc
Q psy12280 147 RPEYWRDRLRKLRAMGANTVETYIAWNLHEPL--KDVY-EFGDNNK-DIDFVKFIKIAQEEDLFVIIRPGPYIC 216 (758)
Q Consensus 147 p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~--~G~f-dF~g~~~-~~DL~~Fl~la~e~GL~VIlRpGPYIc 216 (758)
..+..++.++++|+.|+-+=.+.+=+.++.-. ++.+ +|+.+.. .-|..++++..+++|++|++-.=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 36677999999999998866665543333321 2222 4444322 568999999999999999988767765
No 172
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=27.84 E-value=7e+02 Score=25.84 Aligned_cols=130 Identities=14% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecC------CCccccccCC----
Q psy12280 152 RDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP------GPYICAEWDF---- 221 (758)
Q Consensus 152 ~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp------GPYIcAEw~~---- 221 (758)
++.++.|+++|++++.+ .---.|||.- .-|.+.++..++.|+..+--- .||..-|...
T Consensus 67 ~~~~~~L~~~G~d~~tl--------aNNH~fD~G~----~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg 134 (239)
T cd07381 67 PEVADALKAAGFDVVSL--------ANNHTLDYGE----EGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVA 134 (239)
T ss_pred HHHHHHHHHhCCCEEEc--------ccccccccch----HHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEE
Q ss_pred ------CCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCCCCcchHHHHHHH
Q psy12280 222 ------GGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNVADKNYMREL 295 (758)
Q Consensus 222 ------GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~~y~~d~~Y~~~L 295 (758)
...+.|........+...++. +.+.++++++-+. +.. =|++.+.+.||.. .-..+.+.+
T Consensus 135 ~ig~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~lr~~-~D~-------vIv~~H~G~e~~~-----~p~~~~~~l 199 (239)
T cd07381 135 FLAYTYGTNGIPLAAGARPGGVNPLDL--ERIAADIAEAKKK-ADI-------VIVSLHWGVEYSY-----YPTPEQREL 199 (239)
T ss_pred EEEEECCCCCCcCcccCCccccCccCH--HHHHHHHHHHhhc-CCE-------EEEEecCcccCCC-----CCCHHHHHH
Q ss_pred HHHHHhcCCCcce
Q psy12280 296 VAMLRSNGIRSPL 308 (758)
Q Consensus 296 ~~~~~~~G~~vpl 308 (758)
.+.+.+.|++..+
T Consensus 200 a~~l~~~G~D~Ii 212 (239)
T cd07381 200 ARALIDAGADLVI 212 (239)
T ss_pred HHHHHHCCCCEEE
No 173
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=27.73 E-value=1.2e+02 Score=33.43 Aligned_cols=74 Identities=9% Similarity=0.088 Sum_probs=52.6
Q ss_pred ecCCCC---ChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccc
Q psy12280 141 IHYFRV---RPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYIC 216 (758)
Q Consensus 141 ~Hy~R~---p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIc 216 (758)
+|..|. ..+..++.++++++.++-.=.+.+=+.+.. .-+.|+|+-. ..-|..+|++..+++|++|++-.=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~-~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPY-RFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechh-cCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 445554 366789999999999988666554433322 2345555421 2569999999999999999988878886
No 174
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=27.57 E-value=1.7e+02 Score=32.01 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=50.5
Q ss_pred CCCChhhHHHHHHHHHHcCCC--EEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccc
Q psy12280 144 FRVRPEYWRDRLRKLRAMGAN--TVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYIC 216 (758)
Q Consensus 144 ~R~p~e~W~drL~k~Ka~GlN--tV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIc 216 (758)
.....+.-++.++++++.|+. +|-+=+.|. ..-|.|.|+-. ..-|..++++..+++|+++++-.=|||+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~-~FPdp~~mi~~l~~~G~k~~l~i~P~i~ 95 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPT-KFPDPKGMIDQLHDLGFRVTLWVHPFIN 95 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChh-hCCCHHHHHHHHHHCCCeEEEEECCeeC
Confidence 456788889999999999965 444434452 33465555421 2468999999999999999988877775
No 175
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=27.30 E-value=1.8e+02 Score=31.95 Aligned_cols=101 Identities=13% Similarity=0.100 Sum_probs=63.8
Q ss_pred eecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCC--ceEEecCCC----
Q psy12280 140 SIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEED--LFVIIRPGP---- 213 (758)
Q Consensus 140 ~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~G--L~VIlRpGP---- 213 (758)
+.|+..-+.+.=-++|++-.++|.+.+-| ++-|+- ..+.+|++.|++.| +.|+...-|
T Consensus 154 eghp~~~~~~~dl~~Lk~K~~aGA~~~iT------------Q~~Fd~----~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~ 217 (296)
T PRK09432 154 EVHPEAKSAQADLINLKRKVDAGANRAIT------------QFFFDV----ESYLRFRDRCVSAGIDVEIVPGILPVSNF 217 (296)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCeeec------------ccccch----HHHHHHHHHHHHcCCCCCEEeeccccCCH
Confidence 45555444322223576667899998888 333443 46899999999999 455555555
Q ss_pred ----ccccccCCCCCCcccccCCCceec--cCC-HhHHHHHHHHHHHHHHHhhcc
Q psy12280 214 ----YICAEWDFGGMPSYLLREPGIKLR--SMD-PKYLNRVRQYFNNLIPLLEPL 261 (758)
Q Consensus 214 ----YIcAEw~~GGlP~WL~~~p~i~~R--t~d-p~y~~~v~~w~~~l~~~l~~~ 261 (758)
++ ++...-++|.|+.+. +. ..+ ....++--+|..+++..|.+.
T Consensus 218 ~~~~~~-~~~~Gv~vP~~l~~~----l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~ 267 (296)
T PRK09432 218 KQLKKF-ADMTNVRIPAWMAKM----FDGLDDDAETRKLVGASIAMDMVKILSRE 267 (296)
T ss_pred HHHHHH-HHccCCCCCHHHHHH----HHhcCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 24 677778899999864 11 133 334555666666677766543
No 176
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=27.30 E-value=1.9e+02 Score=31.76 Aligned_cols=73 Identities=21% Similarity=0.309 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcc
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSY 227 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~W 227 (758)
.|+-+..-+..|++|.+.++- ...-|+-.-|+|.|. .+.-|...-+.+++.||.|+-+.
T Consensus 58 ~E~i~~~A~~vk~~Ga~~lRG----gafKPRTSPYsFQGl-ge~gL~~l~~a~~~~Gl~vvtEv---------------- 116 (286)
T COG2876 58 EEQVRETAESVKAAGAKALRG----GAFKPRTSPYSFQGL-GEEGLKLLKRAADETGLPVVTEV---------------- 116 (286)
T ss_pred HHHHHHHHHHHHHcchhhccC----CcCCCCCCccccccc-CHHHHHHHHHHHHHcCCeeEEEe----------------
Confidence 677788888999999999998 445566667899983 11334445567788999999774
Q ss_pred cccCCCceeccCCHhHHHHHHHHHH
Q psy12280 228 LLREPGIKLRSMDPKYLNRVRQYFN 252 (758)
Q Consensus 228 L~~~p~i~~Rt~dp~y~~~v~~w~~ 252 (758)
.|+.+.+.+.+|.+
T Consensus 117 -----------m~~~~~e~~~~y~D 130 (286)
T COG2876 117 -----------MDVRDVEAAAEYAD 130 (286)
T ss_pred -----------cCHHHHHHHHhhhh
Confidence 57777888777744
No 177
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=27.15 E-value=64 Score=33.89 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEecccCcCCCCCCe-eeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 149 EYWRDRLRKLRAMGANTVETYIAWNLHEPLKDV-YEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 149 e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~-fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
+..++.++.++++|+.+|.+...+......+.+ ++.- ...|.++.++|++.|+.+.++|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~----~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATL----VENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHH----HHHHHHHHHHHHHcCCEEEEEe
Confidence 557889999999999999873322111111111 1111 1356778889999999999998
No 178
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.03 E-value=8.1e+02 Score=26.99 Aligned_cols=67 Identities=12% Similarity=0.301 Sum_probs=45.7
Q ss_pred cCCCCChhhHHHHHHHHHHcCCCEEEEecc--cCcC---CCCC---Ceee-------------eeCC--CccccHHHHHH
Q psy12280 142 HYFRVRPEYWRDRLRKLRAMGANTVETYIA--WNLH---EPLK---DVYE-------------FGDN--NKDIDFVKFIK 198 (758)
Q Consensus 142 Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~--Wn~H---EP~~---G~fd-------------F~g~--~~~~DL~~Fl~ 198 (758)
||+ |.+..++.|+.|-..++|++..++- |.+- .|.. |.+. .... =++.|++.+++
T Consensus 12 ~~~--~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~ 89 (326)
T cd06564 12 KYY--SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIA 89 (326)
T ss_pred CCC--CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHH
Confidence 554 7899999999999999999997644 3221 1110 1110 0000 01579999999
Q ss_pred HHHHCCceEEec
Q psy12280 199 IAQEEDLFVIIR 210 (758)
Q Consensus 199 la~e~GL~VIlR 210 (758)
.|+++|+.||-.
T Consensus 90 yA~~rgI~vIPE 101 (326)
T cd06564 90 YAKDRGVNIIPE 101 (326)
T ss_pred HHHHcCCeEecc
Confidence 999999999955
No 179
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=26.91 E-value=60 Score=33.81 Aligned_cols=60 Identities=13% Similarity=0.009 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCC-CCCeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEP-LKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP-~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
.+.+++.++.++++|+.+|.+-.-+..-++ .+-.+.- . ...+.++.++|++.|+.+.++|
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~-~---~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARAT-L---VENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHH-H---HHHHHHHHHHHHhcCCEEEEEE
Confidence 367888999999999999986322110000 0000000 0 1347888899999999999997
No 180
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=26.79 E-value=3.2e+02 Score=31.37 Aligned_cols=93 Identities=22% Similarity=0.353 Sum_probs=60.8
Q ss_pred ECCEEeEEEE-EeecCCC-----CChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHH
Q psy12280 129 LNGKEFRILS-GSIHYFR-----VRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQE 202 (758)
Q Consensus 129 lnGkp~~i~s-G~~Hy~R-----~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e 202 (758)
.+|..+-++| |+|-+.- +..+.-.+.++.+=+.|+|.|+| .|.+|--.. +.|+.-|=+
T Consensus 8 k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidT--A~~Yh~g~s--------------E~~lgkaL~ 71 (391)
T COG1453 8 KTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDT--AWPYHGGES--------------EEFLGKALK 71 (391)
T ss_pred CCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEee--cccccCCCc--------------hHHHHHHhh
Confidence 3454554444 6666533 25677888899999999999999 777875442 455544433
Q ss_pred C--CceEEecCCCccccccCCCCCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhc
Q psy12280 203 E--DLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEP 260 (758)
Q Consensus 203 ~--GL~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~ 260 (758)
. --.|.|-. .+|.|..++ .+.+++.|++=+.++.-
T Consensus 72 ~~~Rekv~LaT-----------Klp~~~~~~------------~edm~r~fneqLekl~~ 108 (391)
T COG1453 72 DGYREKVKLAT-----------KLPSWPVKD------------REDMERIFNEQLEKLGT 108 (391)
T ss_pred hcccceEEEEe-----------ecCCccccC------------HHHHHHHHHHHHHHhCC
Confidence 3 34477764 588888775 46677777766666643
No 181
>PRK05660 HemN family oxidoreductase; Provisional
Probab=26.74 E-value=67 Score=36.21 Aligned_cols=63 Identities=14% Similarity=0.039 Sum_probs=41.6
Q ss_pred EEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCc-cccHHHHHHHHHHCCceE
Q psy12280 137 LSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNK-DIDFVKFIKIAQEEDLFV 207 (758)
Q Consensus 137 ~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~-~~DL~~Fl~la~e~GL~V 207 (758)
++-+.++..+.+ +.|+.||++|+|.|+.. ...-.+-+.+.-+..+ ..+..+.++.|++.|+.+
T Consensus 96 it~e~np~~l~~----e~l~~Lk~~Gv~risiG----vqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~ 159 (378)
T PRK05660 96 ITMEANPGTVEA----DRFVGYQRAGVNRISIG----VQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRS 159 (378)
T ss_pred EEEEeCcCcCCH----HHHHHHHHcCCCEEEec----cCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCe
Confidence 444555544444 88999999999999993 3333333444443322 356777899999999953
No 182
>KOG2024|consensus
Probab=26.71 E-value=74 Score=34.73 Aligned_cols=47 Identities=30% Similarity=0.499 Sum_probs=35.3
Q ss_pred CCcccccccccCCCCC------ccceEEEeecccccCCC------CCceeEeccccceEEEEEECCc
Q psy12280 498 SLIPMEDLAVNNGTGQ------SFGYTLYRQPDWHIPTD------QDAIMRIEGRVADIAIVMVNQE 552 (758)
Q Consensus 498 ~P~~mE~l~~n~~~gQ------~~GyvlYrt~~~~i~~~------~~~~L~i~~~~~D~a~Vfvng~ 552 (758)
.|-++.++ || .+|.+||.-+ +.++.. ....|++ +++|-+|.|||||.
T Consensus 70 vpss~nDi------~~d~~lrdfv~~~wyer~-v~vpe~w~~~~~~r~vlr~-~s~H~~Aivwvng~ 128 (297)
T KOG2024|consen 70 VPSSFNDI------GQDWRLRDFVGLVWYERT-VTVPESWTQDLGKRVVLRI-GSAHSYAIVWVNGV 128 (297)
T ss_pred cccchhcc------ccCCccccceeeeEEEEE-EEcchhhhhhcCCeEEEEe-ecccceeEEEEcce
Confidence 45556666 55 4799999987 655543 2267887 89999999999988
No 183
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=26.68 E-value=76 Score=33.67 Aligned_cols=58 Identities=9% Similarity=0.025 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHcCCCEEEEecccC-cCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 150 YWRDRLRKLRAMGANTVETYIAWN-LHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 150 ~W~drL~k~Ka~GlNtV~tYv~Wn-~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
.+++.++.++++|+++|.+.-... ..+..+-.++.. ...|.+..++|+++|+.+.+++
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~----~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRF----REGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHH----HHHHHHHHHHHHHcCCEEEEee
Confidence 578889999999999997621100 000000001110 1456788899999999999995
No 184
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=26.32 E-value=1.3e+02 Score=33.33 Aligned_cols=69 Identities=10% Similarity=-0.007 Sum_probs=50.2
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccc
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAE 218 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAE 218 (758)
.+.-++.++++++.|+.+=.+.+=+.+. ...+.|.|+-. ..-|...+++..++.|++|++-.=|+|+.+
T Consensus 23 ~~ev~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~-~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 23 QEDVKEVDAGFDEHDIPYDVIWLDIEHT-DGKRYFTWDKK-KFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEChHHh-CCCCceEeCcc-cCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 5667889999999999876665443322 23445555421 145999999999999999999988998753
No 185
>PRK13791 lysozyme inhibitor; Provisional
Probab=25.87 E-value=1.3e+02 Score=28.81 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHhheeee---eecCccchhcccccceeccccCCCC---cccccCCcccCCcccccccccCCCCCCceEe
Q psy12280 30 IGLACLLLGLLTISMMIL---KISSDTKICENKLDLKISESNVNNP---ADVDINGLPVTTDSEILMTSSEDGGSPIITN 103 (758)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (758)
+-++|+++-|...+.+.. .+..=+-.|+++--+.++--|..+| |.+..+|..++-.+.+..|-+-
T Consensus 7 ~~~~~~~~~ls~~~~~~~~~~~~~t~~YqC~~~~~l~V~y~n~~~g~s~A~l~~~g~~i~l~~v~SaSGar--------- 77 (113)
T PRK13791 7 IPFTLFLAALSASTTSIAASQEITKSIYTCNDNQVLEVIYVNTEAGNAYAIISQVDEMIPMRLMKMASGAN--------- 77 (113)
T ss_pred HHHHHHHHHHhhhhhhccCCCCcccEEEECCCCCeEEEEEeCCCCCccEEEEEECCeEEEEEEEeecCcce---------
Confidence 345555555666666553 3334456799987777777777774 8888888776655554444332
Q ss_pred EE------EeeeeccceeeeEe
Q psy12280 104 YI------YYEFEKNKENTGLQ 119 (758)
Q Consensus 104 ~~------~~~~~~~~r~~~v~ 119 (758)
|+ .|++|..++.-.+.
T Consensus 78 Y~~~~~~~~y~~WtKG~~A~L~ 99 (113)
T PRK13791 78 YEAINKNYTYKLYTKGKTAELV 99 (113)
T ss_pred eeccCCCceEEEEEcCCeEEEE
Confidence 33 36666666655554
No 186
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=25.79 E-value=1.4e+02 Score=33.03 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=51.1
Q ss_pred ecCCCC---ChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccc
Q psy12280 141 IHYFRV---RPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYIC 216 (758)
Q Consensus 141 ~Hy~R~---p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIc 216 (758)
+|..|. ..+..++.++++++.|+-+=.+.+=+.+.. .-+.|.|+-. ..-|...+++..+++|++|++-.=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~-~fPdp~~m~~~l~~~g~~~~~~~~P~v~ 89 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKE-RFPDPKELIKELHEQGFKVVTIIDPGVK 89 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccc-cCCCHHHHHHHHHHCCCEEEEEEeCcee
Confidence 345443 366778999999999998655544444333 2334555321 1458899999999999999988777775
No 187
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=25.27 E-value=55 Score=34.70 Aligned_cols=58 Identities=9% Similarity=0.041 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEecccCcCCCC---CCeeeeeCCCccccHHHHHHHHHHCCceEEecCCC
Q psy12280 149 EYWRDRLRKLRAMGANTVETYIAWNLHEPL---KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGP 213 (758)
Q Consensus 149 e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~---~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGP 213 (758)
+.+++.++.++++|+.+|.+ |.-+.+. +..+.-. ...+.++.++|+++|+.+.+++-+
T Consensus 85 ~~~~~~i~~A~~lG~~~v~~---~~g~~~~~~~~~~~~~~----~~~l~~l~~~a~~~gi~l~lEn~~ 145 (279)
T cd00019 85 ERLKDEIERCEELGIRLLVF---HPGSYLGQSKEEGLKRV----IEALNELIDKAETKGVVIALETMA 145 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEE---CCCCCCCCCHHHHHHHH----HHHHHHHHHhccCCCCEEEEeCCC
Confidence 55788999999999998766 3332221 1111100 145677788888999999999743
No 188
>PRK15492 triosephosphate isomerase; Provisional
Probab=25.26 E-value=1.2e+02 Score=32.94 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=36.2
Q ss_pred HHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCC
Q psy12280 155 LRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPG 212 (758)
Q Consensus 155 L~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpG 212 (758)
..++|++|++.|-+ -|..++-.|.=+ + ..+.+=++.|.++||.+|++.|
T Consensus 87 a~mLkd~G~~~vii-----GHSERR~~f~Et-d---~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 87 PLMLKEIGTQLVMI-----GHSERRHKFGET-D---QEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHHcCCCEEEE-----CccccccccCcc-h---HHHHHHHHHHHHCCCEEEEEcC
Confidence 45899999999999 454444444322 2 4566678899999999999976
No 189
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=25.09 E-value=79 Score=35.24 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=42.2
Q ss_pred EEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCc-cccHHHHHHHHHHCCce
Q psy12280 137 LSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNK-DIDFVKFIKIAQEEDLF 206 (758)
Q Consensus 137 ~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~-~~DL~~Fl~la~e~GL~ 206 (758)
++-+.|+..+.+ +.|+.||++|+|.|+.. ...-.+.+.+.-|+.+ ..++.+.++.|++.|+.
T Consensus 89 itie~np~~lt~----e~l~~l~~~Gv~risiG----vqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~ 151 (360)
T TIGR00539 89 ITTEANPELITA----EWCKGLKGAGINRLSLG----VQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIE 151 (360)
T ss_pred EEEEeCCCCCCH----HHHHHHHHcCCCEEEEe----cccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 455666666653 67899999999999993 3333344444444322 35778889999999985
No 190
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=24.98 E-value=1.6e+02 Score=32.86 Aligned_cols=75 Identities=12% Similarity=0.158 Sum_probs=54.6
Q ss_pred ecCCCC---ChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccH--HHHHHHHHHCCceEEecCCCcc
Q psy12280 141 IHYFRV---RPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDF--VKFIKIAQEEDLFVIIRPGPYI 215 (758)
Q Consensus 141 ~Hy~R~---p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL--~~Fl~la~e~GL~VIlRpGPYI 215 (758)
+|..|. ..+.-++.++++++.|+.+=.+.+=+.++.. -+.|.|+.. ..-|. .++++..++.|+.|++-.=|+|
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~-~~~f~~d~~-~FPdp~~~~mi~~L~~~G~k~~~~i~P~v 90 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDR-RRDFTLDPV-RFPGLKMPEFVDELHANGQHYVPILDPAI 90 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECcccccC-ccceecccc-cCCCccHHHHHHHHHHCCCEEEEEEeCcc
Confidence 455554 3677899999999999987666654444433 345555431 14578 9999999999999999888888
Q ss_pred cc
Q psy12280 216 CA 217 (758)
Q Consensus 216 cA 217 (758)
+-
T Consensus 91 ~~ 92 (339)
T cd06602 91 SA 92 (339)
T ss_pred cc
Confidence 75
No 191
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=24.70 E-value=1.7e+02 Score=31.71 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=43.5
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecccCcCCC--CCCeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 147 RPEYWRDRLRKLRAMGANTVETYIAWNLHEP--LKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 147 p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP--~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
.++..++.++++++.|.+.|.+|.-+..-.+ .++...++- ..+.+.+++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~----e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSE----EELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCH----HHHHHHHHHHHHcCCEEEEEe
Confidence 3788999999999999999999875422111 112112222 457889999999999988774
No 192
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=24.55 E-value=1.5e+02 Score=30.06 Aligned_cols=41 Identities=17% Similarity=0.059 Sum_probs=32.9
Q ss_pred HHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEec
Q psy12280 154 RLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIR 210 (758)
Q Consensus 154 rL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlR 210 (758)
.+++++++|.+.|.+.... . . ..+.++++.|+++|+.+++.
T Consensus 68 ~~~~~~~~Gad~i~vh~~~-----~--------~---~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVA-----D--------D---ATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHcCCCEEEEeccC-----C--------H---HHHHHHHHHHHHcCCEEEEE
Confidence 7889999999999984332 1 1 35789999999999999876
No 193
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=24.53 E-value=1.4e+02 Score=31.23 Aligned_cols=44 Identities=23% Similarity=0.160 Sum_probs=35.9
Q ss_pred HHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 155 LRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 155 L~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
..++|++|++.|-+ ++-|.+ |.- .|+.+=++.|.++||.+|++.
T Consensus 74 ~~mLkd~G~~~vii----GHSERR-----f~E----tdi~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI----NHSERR-----MKL----ADIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE----CcccCC-----CCc----cHHHHHHHHHHHCCCEEEEEE
Confidence 45899999999999 555555 543 568889999999999999986
No 194
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=24.52 E-value=5.3e+02 Score=29.59 Aligned_cols=86 Identities=16% Similarity=0.117 Sum_probs=49.8
Q ss_pred EeEEEEEeecCCCCChhhH----HHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEE
Q psy12280 133 EFRILSGSIHYFRVRPEYW----RDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVI 208 (758)
Q Consensus 133 p~~i~sG~~Hy~R~p~e~W----~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VI 208 (758)
.+.+++|.+--...|+... .+.++++++.|+.+ |+.+.=|... . .+....++.++.|+.|+
T Consensus 41 D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v---~~I~GNHD~~-------~-----~l~~~~~~l~~~gi~vl 105 (407)
T PRK10966 41 DAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQL---VVLAGNHDSV-------A-----TLNESRDLLAFLNTTVI 105 (407)
T ss_pred CEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcE---EEEcCCCCCh-------h-----hhhhHHHHHHHCCcEEE
Confidence 3577888887655665443 34556777777654 4434444332 2 25566788889999988
Q ss_pred ecCC------CccccccCCCCCCcccccCCCc
Q psy12280 209 IRPG------PYICAEWDFGGMPSYLLREPGI 234 (758)
Q Consensus 209 lRpG------PYIcAEw~~GGlP~WL~~~p~i 234 (758)
-.+. |... +-..|....|+...|-+
T Consensus 106 ~~~~~~~~~~~v~l-~~~~g~~~~~i~~lPy~ 136 (407)
T PRK10966 106 ASASDDLGHQVIIL-PRRDGTPGAVLCAIPFL 136 (407)
T ss_pred ecccccCCcceEEE-ecCCCCeeeEEEECCCC
Confidence 5542 2111 22344455677666654
No 195
>KOG3833|consensus
Probab=24.26 E-value=79 Score=35.38 Aligned_cols=53 Identities=21% Similarity=0.311 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCce--EE-ecC
Q psy12280 150 YWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLF--VI-IRP 211 (758)
Q Consensus 150 ~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~--VI-lRp 211 (758)
.|++.+.+++..|+ +|++.-+=...|..|+.| +|+...+++|+..||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesY--------KdVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESY--------KDVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhh--------hhHHHHhhhhhhcccchhhhcccc
Confidence 49999999999998 678888888889888766 7889999999999996 33 776
No 196
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=24.15 E-value=51 Score=32.06 Aligned_cols=29 Identities=17% Similarity=0.375 Sum_probs=20.0
Q ss_pred cccHHHHHHHHHHCCceEEecCCCcccccc
Q psy12280 190 DIDFVKFIKIAQEEDLFVIIRPGPYICAEW 219 (758)
Q Consensus 190 ~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw 219 (758)
..||..||++|++.|+.|++=.-| |++.|
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~P-vNg~w 63 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQP-VNGKW 63 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-----HHH
T ss_pred HHHHHHHHHHHHHcCCceEEEecC-CcHHH
Confidence 479999999999999998765534 45555
No 197
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=24.14 E-value=3.5e+02 Score=25.48 Aligned_cols=68 Identities=25% Similarity=0.281 Sum_probs=48.5
Q ss_pred EECCEEeEEEEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceE
Q psy12280 128 LLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFV 207 (758)
Q Consensus 128 ~lnGkp~~i~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~V 207 (758)
++.|..+.+.+|..-. .-.++.+.+-++.+.+.|+-++-+.+-=..+ .-| +..+++|.+++|-+
T Consensus 39 ~l~~gElvlttg~~~~-~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~-~iP--------------~~~i~~A~~~~lPl 102 (123)
T PF07905_consen 39 WLRGGELVLTTGYALR-DDDEEELREFIRELAEKGAAGLGIKTGRYLD-EIP--------------EEIIELADELGLPL 102 (123)
T ss_pred hCCCCeEEEECCcccC-CCCHHHHHHHHHHHHHCCCeEEEEeccCccc-cCC--------------HHHHHHHHHcCCCE
Confidence 4666666666664322 3356679999999999999998885432222 233 68899999999999
Q ss_pred EecC
Q psy12280 208 IIRP 211 (758)
Q Consensus 208 IlRp 211 (758)
|.=|
T Consensus 103 i~ip 106 (123)
T PF07905_consen 103 IEIP 106 (123)
T ss_pred EEeC
Confidence 9776
No 198
>PTZ00333 triosephosphate isomerase; Provisional
Probab=24.04 E-value=1.3e+02 Score=32.47 Aligned_cols=48 Identities=25% Similarity=0.200 Sum_probs=37.3
Q ss_pred HHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCC
Q psy12280 156 RKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPG 212 (758)
Q Consensus 156 ~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpG 212 (758)
+++|++|+..|-+ -|..++-.|.=+ + .++.+=++.|.++||.+|++.|
T Consensus 83 ~mL~d~G~~~vii-----GHSERR~~f~Et-d---~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 83 EMLKDLGINWTIL-----GHSERRQYFGET-N---EIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHcCCCEEEE-----CcccccCcCCCC-c---HHHHHHHHHHHHCCCEEEEEcC
Confidence 6899999999999 554444444222 2 6788889999999999999976
No 199
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=24.00 E-value=1.4e+02 Score=32.00 Aligned_cols=49 Identities=24% Similarity=0.368 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEE-ecCCCcccc
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVI-IRPGPYICA 217 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VI-lRpGPYIcA 217 (758)
.+.-.+.++++|++|+ .|+. +.+|. .+-++.|++.|-..| |-+|||..|
T Consensus 109 ~~~l~~~i~~l~~~gI-~VSL-----FiDPd---------------~~qi~~A~~~GAd~VELhTG~Ya~a 158 (234)
T cd00003 109 AEKLKPIIERLKDAGI-RVSL-----FIDPD---------------PEQIEAAKEVGADRVELHTGPYANA 158 (234)
T ss_pred HHHHHHHHHHHHHCCC-EEEE-----EeCCC---------------HHHHHHHHHhCcCEEEEechhhhcC
Confidence 5677889999999999 4888 66777 577999999999977 999999874
No 200
>PRK01060 endonuclease IV; Provisional
Probab=23.99 E-value=5.9e+02 Score=26.82 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHcCCCE--EEEecc--cCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCce-EEecCC
Q psy12280 148 PEYWRDRLRKLRAMGANT--VETYIA--WNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLF-VIIRPG 212 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNt--V~tYv~--Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~-VIlRpG 212 (758)
++.-+..-+++++.|+.. +..-.+ .|+-.|.+...+.+- ..+.+.+++|++.|-. |++.||
T Consensus 46 ~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~----~~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 46 ELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSR----DFLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred HHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHH----HHHHHHHHHHHHcCCCEEEEcCC
Confidence 333333344566888874 322222 344444443333332 4688899999999997 557765
No 201
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=23.95 E-value=2.9e+02 Score=33.48 Aligned_cols=111 Identities=14% Similarity=0.055 Sum_probs=75.9
Q ss_pred CCEEeEEEEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEe
Q psy12280 130 NGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVII 209 (758)
Q Consensus 130 nGkp~~i~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIl 209 (758)
++++-+.+++..|+.+-+.+.=-++|.+-.++|..-+-|=.+++. ..+.+|++.|++.++.||.
T Consensus 459 ~~~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd~----------------~~~~~~~~~~~~~~vpIi~ 522 (612)
T PRK08645 459 GKKTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYDE----------------ELIEELLEATKHLGVPIFI 522 (612)
T ss_pred CCCCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCCH----------------HHHHHHHHHHhcCCCCEEE
Confidence 445557889999988776666666777777899999999444332 2467888888877888888
Q ss_pred cCCCcc--------ccccCCCCCCcccccCCCceecc-CC-HhHHHHHHHHHHHHHHHhhc
Q psy12280 210 RPGPYI--------CAEWDFGGMPSYLLREPGIKLRS-MD-PKYLNRVRQYFNNLIPLLEP 260 (758)
Q Consensus 210 RpGPYI--------cAEw~~GGlP~WL~~~p~i~~Rt-~d-p~y~~~v~~w~~~l~~~l~~ 260 (758)
..-|-. ..+|..-=+|.|+.+. ++. .| ...+++-.++..+++..|.+
T Consensus 523 GImPi~s~k~~~~~~~~~~Gv~vP~~l~~~----l~~~~d~~~~~~~gv~~a~e~i~~l~~ 579 (612)
T PRK08645 523 GIMPLVSYRNAEFLHNEVPGITLPEEIRER----MRAVEDKEEAREEGVAIARELIDAARE 579 (612)
T ss_pred EeeecCCHHHHHHHHhCCCCCCCCHHHHHH----HHhcCCchHHHHHHHHHHHHHHHHHHh
Confidence 777733 2345555679998863 221 13 35666677777777776653
No 202
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=23.59 E-value=4.1e+02 Score=28.62 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=76.9
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHH-HCCceEEecCCCccccccCCC
Q psy12280 144 FRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQ-EEDLFVIIRPGPYICAEWDFG 222 (758)
Q Consensus 144 ~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~-e~GL~VIlRpGPYIcAEw~~G 222 (758)
.+...+.=.+..+.+-++|+..|++..+....+...|...|... ..+.+..++.+ +.-+-+++|++-..
T Consensus 15 ~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~------- 84 (266)
T cd07944 15 WDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDD---EFLRRLLGDSKGNTKIAVMVDYGNDD------- 84 (266)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCH---HHHHHHHhhhccCCEEEEEECCCCCC-------
Confidence 46678888899999999999999998887765555555555543 33444444442 44555777875311
Q ss_pred CCCccccc--CCCce-eccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCCCCcchHHHHHHHHHHH
Q psy12280 223 GMPSYLLR--EPGIK-LRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNVADKNYMRELVAML 299 (758)
Q Consensus 223 GlP~WL~~--~p~i~-~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~~y~~d~~Y~~~L~~~~ 299 (758)
..++.. ..++. +|...+. +.+++ ....++.++. . |--+.++++.=++ .+.+|+..+.+.+
T Consensus 85 --~~~l~~a~~~gv~~iri~~~~--~~~~~-~~~~i~~ak~----~--G~~v~~~~~~a~~------~~~~~~~~~~~~~ 147 (266)
T cd07944 85 --IDLLEPASGSVVDMIRVAFHK--HEFDE-ALPLIKAIKE----K--GYEVFFNLMAISG------YSDEELLELLELV 147 (266)
T ss_pred --HHHHHHHhcCCcCEEEEeccc--ccHHH-HHHHHHHHHH----C--CCeEEEEEEeecC------CCHHHHHHHHHHH
Confidence 111111 11111 3332211 11211 1122333322 2 4445566554332 3567777777788
Q ss_pred HhcCCCcceEEcCC
Q psy12280 300 RSNGIRSPLFTADD 313 (758)
Q Consensus 300 ~~~G~~vpl~T~dg 313 (758)
.+.|.++ ++-+|.
T Consensus 148 ~~~g~~~-i~l~DT 160 (266)
T cd07944 148 NEIKPDV-FYIVDS 160 (266)
T ss_pred HhCCCCE-EEEecC
Confidence 8889884 344443
No 203
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=23.56 E-value=1.5e+02 Score=32.98 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=42.3
Q ss_pred EEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCc-cccHHHHHHHHHHCCce
Q psy12280 137 LSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNK-DIDFVKFIKIAQEEDLF 206 (758)
Q Consensus 137 ~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~-~~DL~~Fl~la~e~GL~ 206 (758)
++-+.++..+. ++.|+.+|++|+|.|++.|- .-.+-.-++-|+.+ ..++.+.++.++++|+.
T Consensus 87 itiE~nP~~~~----~e~l~~l~~~GvnRiSiGvQ----S~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 87 ITTEANPNSAT----KAWLKGMKNLGVNRISFGVQ----SFNEDKLKFLGRIHSQKQIIKAIENAKKAGFE 149 (350)
T ss_pred EEEEeCCCCCC----HHHHHHHHHcCCCEEEEecc----cCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 56677776665 47899999999999999432 22222333334322 35678889999999985
No 204
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=23.30 E-value=2.7e+02 Score=29.72 Aligned_cols=101 Identities=20% Similarity=0.142 Sum_probs=60.9
Q ss_pred eecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCC--ceEEecCCCccc-
Q psy12280 140 SIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEED--LFVIIRPGPYIC- 216 (758)
Q Consensus 140 ~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~G--L~VIlRpGPYIc- 216 (758)
+.|+..-+.+.=.++|++=.++|.+.+-|=.+ |+- ..+.+|++.|++.| +.|+...-|-..
T Consensus 138 e~hp~~~~~~~~~~~L~~Ki~aGA~f~iTQ~~------------fd~----~~~~~~~~~~~~~gi~vPIi~GI~p~~s~ 201 (274)
T cd00537 138 EGHPEAPSLEEDIKRLKRKVDAGADFIITQLF------------FDN----DAFLRFVDRCRAAGITVPIIPGIMPLTSY 201 (274)
T ss_pred CcCCCCCCHHHHHHHHHHHHHCCCCEEeeccc------------ccH----HHHHHHHHHHHHcCCCCCEEeeccccCCH
Confidence 55555554444445555555679999999333 332 35789999999998 556666656332
Q ss_pred ------cccCCCCCCcccccCCCceec--cCC-HhHHHHHHHHHHHHHHHhhc
Q psy12280 217 ------AEWDFGGMPSYLLREPGIKLR--SMD-PKYLNRVRQYFNNLIPLLEP 260 (758)
Q Consensus 217 ------AEw~~GGlP~WL~~~p~i~~R--t~d-p~y~~~v~~w~~~l~~~l~~ 260 (758)
++|-.-++|.|+.+. +. ..+ ....+.-.++..+++..+..
T Consensus 202 ~~l~~~~~~~Gv~vP~~~~~~----l~~~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 202 KQAKRFAKLCGVEIPDWLLER----LEKLKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHHHHHHhhCCCCCHHHHHH----HHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455566789999863 21 122 23344555555666666654
No 205
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.26 E-value=9.6e+02 Score=26.57 Aligned_cols=64 Identities=9% Similarity=0.124 Sum_probs=46.4
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEec----ccCcCC---CC---CCeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 146 VRPEYWRDRLRKLRAMGANTVETYI----AWNLHE---PL---KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 146 ~p~e~W~drL~k~Ka~GlNtV~tYv----~Wn~HE---P~---~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
+|.+...+.|+.|....+|+...++ -|-+-- |. .|.+. +.=++.|+..+++.|++.|+.||-+.
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~--~~yT~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDG--LYYTQEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCC--CccCHHHHHHHHHHHHHcCCEEEEee
Confidence 6799999999999999999999987 364321 11 12110 00113699999999999999999653
No 206
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=23.23 E-value=4.1e+02 Score=27.91 Aligned_cols=126 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCC-------CC
Q psy12280 152 RDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFG-------GM 224 (758)
Q Consensus 152 ~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~G-------Gl 224 (758)
++.++.||.+|+++|.+ ----.+||.- .-|..-++..++.||..+ | .-
T Consensus 65 ~~~~~~L~~~G~d~vsl--------ANNH~~D~G~----~gl~~Tl~~L~~~gi~~~-------------Gag~~~~~a~ 119 (250)
T PF09587_consen 65 PEILDALKDAGFDVVSL--------ANNHIFDYGE----EGLLDTLEALDKAGIPYV-------------GAGRNLEEAR 119 (250)
T ss_pred HHHHHHHHHcCCCEEEe--------cCCCCccccH----HHHHHHHHHHHHCCCcEe-------------ECcCChHHhc
Q ss_pred CcccccCCCcee------------------------ccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccc
Q psy12280 225 PSYLLREPGIKL------------------------RSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELA 280 (758)
Q Consensus 225 P~WL~~~p~i~~------------------------Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg 280 (758)
...+.+..++++ -..+.......+.-.+.+.+.++....... =-|++++-+.||.
T Consensus 120 ~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r~~~D-~vIv~~HwG~e~~ 198 (250)
T PF09587_consen 120 RPAIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREARKKAD-VVIVSLHWGIEYE 198 (250)
T ss_pred CeEEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHHhcCCC-EEEEEeccCCCCC
Q ss_pred cCCCCcchHHHHHHHHHHHHhcCCCcce
Q psy12280 281 VLGPNVADKNYMRELVAMLRSNGIRSPL 308 (758)
Q Consensus 281 ~~~~y~~d~~Y~~~L~~~~~~~G~~vpl 308 (758)
. .-..+.+.+...+.++|.++.+
T Consensus 199 ~-----~p~~~q~~~a~~lidaGaDiIi 221 (250)
T PF09587_consen 199 N-----YPTPEQRELARALIDAGADIII 221 (250)
T ss_pred C-----CCCHHHHHHHHHHHHcCCCEEE
No 207
>PRK10426 alpha-glucosidase; Provisional
Probab=23.18 E-value=7.8e+02 Score=30.10 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHcCCCEEEEec-ccCcCCCC----CCeeeeeCCCc-cccHHHHHHHHHHCCceEEecCCCccc
Q psy12280 149 EYWRDRLRKLRAMGANTVETYI-AWNLHEPL----KDVYEFGDNNK-DIDFVKFIKIAQEEDLFVIIRPGPYIC 216 (758)
Q Consensus 149 e~W~drL~k~Ka~GlNtV~tYv-~Wn~HEP~----~G~fdF~g~~~-~~DL~~Fl~la~e~GL~VIlRpGPYIc 216 (758)
+.-++.++++|+.|+-+=.+++ .|...... ..-++|+.+.. .-|.+++++..+++|++|++-.=|||+
T Consensus 221 ~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~ 294 (635)
T PRK10426 221 EVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLA 294 (635)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccC
Confidence 3456789999999987665554 36432211 11235555433 468999999999999999998888886
No 208
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=23.17 E-value=47 Score=36.72 Aligned_cols=114 Identities=18% Similarity=0.341 Sum_probs=59.8
Q ss_pred CEEEEecccCcCCCC-CCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcccccCCCceec-cCCH
Q psy12280 164 NTVETYIAWNLHEPL-KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLR-SMDP 241 (758)
Q Consensus 164 NtV~tYv~Wn~HEP~-~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~~R-t~dp 241 (758)
+.|.++|.|++|=-. | =...++.|+++|..|+ |-.|. ||+.|. .|+..- +. ..+.
T Consensus 27 ~yiD~fvywsh~~i~iP-------------~~~widaAHrnGV~vL---GTiif-e~~~~~--~~~~~l----l~~~~~g 83 (311)
T PF03644_consen 27 QYIDIFVYWSHGLITIP-------------PAGWIDAAHRNGVKVL---GTIIF-EWGGGA--EWCEEL----LEKDEDG 83 (311)
T ss_dssp GG-SEEEET-TBSSE----------------HHHHHHHHHTT--EE---EEEEE-EEE--H--HHHHHH----T---TTS
T ss_pred cceeeEeecccccccCC-------------CchhHHHHHhcCceEE---EEEEe-cCCchH--HHHHHH----HcCCccc
Confidence 457788889865321 1 1568999999999996 23344 887543 555431 11 2222
Q ss_pred hHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCCCC-cchHHHHHHHHHHHHh-cCCCcceEEc
Q psy12280 242 KYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPN-VADKNYMRELVAMLRS-NGIRSPLFTA 311 (758)
Q Consensus 242 ~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~~y-~~d~~Y~~~L~~~~~~-~G~~vpl~T~ 311 (758)
.| .+.++|+.+.+-+-. .| .++-+|+..+... . ..-.++++.|++.+++ -+..+..|.+
T Consensus 84 ~~-----~~A~kLi~ia~~yGF-DG----w~iN~E~~~~~~~-~~~~l~~F~~~l~~~~~~~~~~~v~WYDs 144 (311)
T PF03644_consen 84 SF-----PYADKLIEIAKYYGF-DG----WLINIETPLSGPE-DAENLIDFLKYLRKEAHENPGSEVIWYDS 144 (311)
T ss_dssp -------HHHHHHHHHHHHHT---E----EEEEEEESSTTGG-GHHHHHHHHHHHHHHHHHT-T-EEEEES-
T ss_pred cc-----HHHHHHHHHHHHcCC-Cc----eEEEecccCCchh-HHHHHHHHHHHHHHHhhcCCCcEEEEeec
Confidence 22 224456666655544 44 7888898876300 1 2346678888888887 2444566665
No 209
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=22.88 E-value=3.7e+02 Score=30.49 Aligned_cols=78 Identities=17% Similarity=0.094 Sum_probs=52.4
Q ss_pred EEECCEEeEEEEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCce
Q psy12280 127 FLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLF 206 (758)
Q Consensus 127 f~lnGkp~~i~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~ 206 (758)
+.+.|....++.|.. .-=..+.-.+..+.+|+.|+..++-+.|= |+.--|.|.|.+ ...+..+-+.|++.||.
T Consensus 112 ~~~g~~~~~~iaGpc--~iE~~~~~~~~A~~lk~~g~~~~r~~~~k----pRtsp~~f~g~~-~e~l~~L~~~~~~~Gl~ 184 (360)
T PRK12595 112 EVIGDGNQSFIFGPC--SVESYEQVEAVAKALKAKGLKLLRGGAFK----PRTSPYDFQGLG-VEGLKILKQVADEYGLA 184 (360)
T ss_pred EEecCCCeeeEEecc--cccCHHHHHHHHHHHHHcCCcEEEccccC----CCCCCccccCCC-HHHHHHHHHHHHHcCCC
Confidence 455544334455641 01136667778888999999999975544 444446677642 25677888999999999
Q ss_pred EEecC
Q psy12280 207 VIIRP 211 (758)
Q Consensus 207 VIlRp 211 (758)
++-.|
T Consensus 185 ~~t~v 189 (360)
T PRK12595 185 VISEI 189 (360)
T ss_pred EEEee
Confidence 99887
No 210
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.87 E-value=3.6e+02 Score=30.64 Aligned_cols=128 Identities=12% Similarity=0.116 Sum_probs=76.8
Q ss_pred HHHHHHHHcCCC-EEEEecccCcCCCCCCeeeee----C-CCccccHHHHHHH----HHHCCceEEecCCCccccccCCC
Q psy12280 153 DRLRKLRAMGAN-TVETYIAWNLHEPLKDVYEFG----D-NNKDIDFVKFIKI----AQEEDLFVIIRPGPYICAEWDFG 222 (758)
Q Consensus 153 drL~k~Ka~GlN-tV~tYv~Wn~HEP~~G~fdF~----g-~~~~~DL~~Fl~l----a~e~GL~VIlRpGPYIcAEw~~G 222 (758)
..++++.+.|+. .+.+ ++|-+.+..|+.- . . .+|+.+++. +++.|..|.+|. |.|
T Consensus 222 ~~i~~L~~~gl~~~Lai----SL~a~~~e~r~~i~P~~~~~---~~l~~l~~~i~~~~~~~g~~V~iey-vLI------- 286 (368)
T PRK14456 222 PEIDRLATSGLKTKLAV----SLHSADQEKRERLMPQAARD---YPLDELREALIGYASKTGEPVTLVY-MLL------- 286 (368)
T ss_pred HHHHHHHHcCCCceEEE----EecCCCHHHHHHhccccCCC---CCHHHHHHHHHHHHHhcCCeEEEEE-EEE-------
Confidence 457888899986 5776 7888877776633 1 2 466666654 455676666663 000
Q ss_pred CCCcccccCCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCCCC-cchHHHHHHHHHHHHh
Q psy12280 223 GMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPN-VADKNYMRELVAMLRS 301 (758)
Q Consensus 223 GlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~~y-~~d~~Y~~~L~~~~~~ 301 (758)
+++ ++++.-.+.+.+|++.+ .. . =++|- -|.++.. .| ....++++++++.+++
T Consensus 287 ---------~Gv---NDs~eda~~L~~~l~~~-------~~--~-VnlIp---yn~~~~~-~~~~ps~e~i~~F~~~L~~ 340 (368)
T PRK14456 287 ---------EGI---NDSPEDARKLIRFASRF-------FC--K-INLID---YNSIVNI-KFEPVCSSTRERFRDRLLD 340 (368)
T ss_pred ---------cCC---CCCHHHHHHHHHHHhcC-------CC--e-eEEee---eccCCCC-CCCCCCHHHHHHHHHHHHH
Confidence 111 23444555555555433 11 1 23331 1333331 13 4567789999999999
Q ss_pred cCCCcceEEcCCCC-CCCCCC
Q psy12280 302 NGIRSPLFTADDPS-MGDSGS 321 (758)
Q Consensus 302 ~G~~vpl~T~dg~~-~~~~G~ 321 (758)
+|+++-+-.+-|.. ...||+
T Consensus 341 ~Gi~vtvR~~~G~di~aACGQ 361 (368)
T PRK14456 341 AGLQVTVRKSYGTTINAACGQ 361 (368)
T ss_pred CCCcEEeeCCCCcchhhcCCc
Confidence 99998877776655 577887
No 211
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.55 E-value=2.3e+02 Score=30.81 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=46.9
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecccCcCCC--------CCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCc
Q psy12280 147 RPEYWRDRLRKLRAMGANTVETYIAWNLHEP--------LKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPY 214 (758)
Q Consensus 147 p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP--------~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPY 214 (758)
..+.-++.++++|+.|+-+=.+++=..+|.- .-+.|.|+-. ..-|..++++..++.|++|++-.=|+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~-~FPdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRK-LFPDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChh-cCCCHHHHHHHHHHCCCEEEEEeCCC
Confidence 4666789999999999987666654333331 1234555421 14699999999999999999876444
No 212
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=22.55 E-value=1.8e+02 Score=33.99 Aligned_cols=56 Identities=11% Similarity=0.074 Sum_probs=46.2
Q ss_pred ecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecC
Q psy12280 141 IHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 141 ~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRp 211 (758)
..|.+.|.+.-++.++++.++|+..|+++.+-|.- +++...++.|+++|+.|.+..
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~---------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV---------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH---------------HHHHHHHHHHHHcCCeEEEEE
Confidence 45677888889999999999999999998876543 347889999999999886553
No 213
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=22.48 E-value=1.6e+02 Score=31.74 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEE-ecCCCcccc
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVI-IRPGPYICA 217 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VI-lRpGPYIcA 217 (758)
.+.-.+.++++|++|+ -|+. +.+|. ..-++.|++.|-..| |-+|||..+
T Consensus 112 ~~~l~~~i~~L~~~gI-rVSL-----FidP~---------------~~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 112 FDKLKPAIARLKDAGI-RVSL-----FIDPD---------------PEQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHHHCCC-EEEE-----EeCCC---------------HHHHHHHHHhCcCEEEEechhhhcC
Confidence 4667889999999999 7788 34676 577999999999966 999999976
No 214
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.37 E-value=87 Score=33.14 Aligned_cols=59 Identities=5% Similarity=-0.023 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHcCCCEEEEecc-cCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCC
Q psy12280 150 YWRDRLRKLRAMGANTVETYIA-WNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPG 212 (758)
Q Consensus 150 ~W~drL~k~Ka~GlNtV~tYv~-Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpG 212 (758)
..++.|+.++++|+..|.+--. +......+..++.- ...|..+.++|+++|+.+.+++-
T Consensus 100 ~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~----~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 100 IMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRF----IDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHH----HHHHHHHHHHHHHhCCEEEEeec
Confidence 4678899999999999975210 00000000001110 13567889999999999999973
No 215
>PRK08227 autoinducer 2 aldolase; Validated
Probab=22.27 E-value=64 Score=35.02 Aligned_cols=47 Identities=6% Similarity=0.057 Sum_probs=36.7
Q ss_pred HHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEe
Q psy12280 154 RLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVII 209 (758)
Q Consensus 154 rL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIl 209 (758)
..+.+-++|..+|.++++|..... -.- ..||.+..+.|++.||-++.
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs~~E------~~~---l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGSEYE------HQS---IKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCCHHH------HHH---HHHHHHHHHHHHHhCCcEEE
Confidence 367788999999999999973211 111 26899999999999999886
No 216
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=22.21 E-value=1.5e+02 Score=32.17 Aligned_cols=49 Identities=31% Similarity=0.323 Sum_probs=35.4
Q ss_pred HHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCC
Q psy12280 155 LRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPG 212 (758)
Q Consensus 155 L~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpG 212 (758)
..++|++|++.|-+ ++-|.+. .|.-. ...+..=++.|.++||.+|++.|
T Consensus 81 ~~mL~d~G~~~vii----GHSERR~---~~~E~--d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 81 AEMLKDLGAKYVLI----GHSERRL---YFGET--DELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred HHHHHHcCCCEEEE----Ccccccc---ccccc--hHHHHHHHHHHHHCCCeEEEEcC
Confidence 45899999999999 5555442 23211 13466778999999999999965
No 217
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=22.14 E-value=1.1e+03 Score=26.07 Aligned_cols=100 Identities=15% Similarity=0.224 Sum_probs=60.3
Q ss_pred HHcCCCEEEEe---cccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCcccccCCCce
Q psy12280 159 RAMGANTVETY---IAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIK 235 (758)
Q Consensus 159 Ka~GlNtV~tY---v~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~WL~~~p~i~ 235 (758)
.+.|+-.-|.- +||..|+...+ |++.-. ...++++|-++++++|+.+.+-|+.||+
T Consensus 58 ~~~~I~~~R~sS~l~P~~~h~~~~~-w~~~~~-~~~~~~~~g~~~~~~~irls~Hp~y~in------------------- 116 (303)
T PRK02308 58 IAHGIGLFRLSSSLIPLATHPELEG-WDYIEP-FKEELREIGEFIKEHNIRLSFHPDQFVV------------------- 116 (303)
T ss_pred HHCCCCEEEcccCcCCCCCChhhcc-cCCCCC-CHHHHHHHHHHHHHcCCCeeccChhhhc-------------------
Confidence 45565544433 78999974332 333211 1368999999999999999999876664
Q ss_pred eccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEecccccccc
Q psy12280 236 LRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAV 281 (758)
Q Consensus 236 ~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~ 281 (758)
+-+.+|.-.+..-+.+..-+..+..+-+.. ...|-+.++--||.
T Consensus 117 L~S~~~ev~e~Si~~L~~~~~~~~~lG~~~--~~~vViHpG~~~~~ 160 (303)
T PRK02308 117 LNSPKPEVVENSIKDLEYHAKLLDLMGIDD--SSKINIHVGGAYGD 160 (303)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCC--CCEEEECCCccCCC
Confidence 334456555655555555555554443221 13677777554443
No 218
>PRK14566 triosephosphate isomerase; Provisional
Probab=22.10 E-value=1.4e+02 Score=32.44 Aligned_cols=49 Identities=20% Similarity=0.121 Sum_probs=35.9
Q ss_pred HHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCC
Q psy12280 155 LRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPG 212 (758)
Q Consensus 155 L~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpG 212 (758)
.+++|++|++.|-+ ++-|.+ ..|.=+ + ..+.+=++.|.++||.+|++.|
T Consensus 88 ~~mL~d~G~~~vii----GHSERR-~~f~Et-d---~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVII----GHSERR-RMYGET-S---NIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEE----Cccccc-CCCCcC-H---HHHHHHHHHHHHCCCEEEEEcC
Confidence 46899999999999 444444 333222 1 4566688899999999999975
No 219
>PLN02284 glutamine synthetase
Probab=21.59 E-value=3.1e+02 Score=30.98 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=43.7
Q ss_pred HHHHHHcCCCEEEEecccCcCCCCCCeeeeeCC-Cc---ccc----HHHHH-HHHHHCCceEEecCCCccccccCCCC
Q psy12280 155 LRKLRAMGANTVETYIAWNLHEPLKDVYEFGDN-NK---DID----FVKFI-KIAQEEDLFVIIRPGPYICAEWDFGG 223 (758)
Q Consensus 155 L~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~-~~---~~D----L~~Fl-~la~e~GL~VIlRpGPYIcAEw~~GG 223 (758)
.+.+.++|+..-.+ +||-.||+|.+.-. .+ -.| ++..+ ++|+++|+.+-.-|=|+. ++|..-|
T Consensus 176 ~~~l~~~Gi~ve~~-----h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~-~~~~GSG 247 (354)
T PLN02284 176 YKACLYAGINISGI-----NGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIP-GDWNGAG 247 (354)
T ss_pred HHHHHHCCCCeEEE-----EcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCC-CCCccCc
Confidence 34449999999988 99999999887632 11 111 12223 589999999999998853 4555444
No 220
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.34 E-value=4e+02 Score=30.27 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=54.1
Q ss_pred EEEC-CEEeEEEEEeecCCCCC-hhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCC
Q psy12280 127 FLLN-GKEFRILSGSIHYFRVR-PEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEED 204 (758)
Q Consensus 127 f~ln-Gkp~~i~sG~~Hy~R~p-~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~G 204 (758)
..+. ++|+.+++| +=.+. ++.-.+.-+.+|++|...++-+.|= |+---|.|.|.+ +.-|.-+-+.+++.|
T Consensus 94 v~iGg~~~l~vIAG---PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~k----pRtsp~sf~G~g-~~gl~~L~~~~~e~G 165 (352)
T PRK13396 94 VPFGENHPVVVVAG---PCSVENEEMIVETAKRVKAAGAKFLRGGAYK----PRTSPYAFQGHG-ESALELLAAAREATG 165 (352)
T ss_pred eEecCCCeEEEEEe---CCcccCHHHHHHHHHHHHHcCCCEEEeeeec----CCCCCcccCCch-HHHHHHHHHHHHHcC
Confidence 3444 466788888 22222 6777888889999999999976554 444446777642 345666677788999
Q ss_pred ceEEecC
Q psy12280 205 LFVIIRP 211 (758)
Q Consensus 205 L~VIlRp 211 (758)
|.++-.+
T Consensus 166 l~~~tev 172 (352)
T PRK13396 166 LGIITEV 172 (352)
T ss_pred CcEEEee
Confidence 9999886
No 221
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=21.12 E-value=1.9e+02 Score=32.19 Aligned_cols=59 Identities=22% Similarity=0.136 Sum_probs=47.3
Q ss_pred EEECCEEeEEEEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCC
Q psy12280 127 FLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEED 204 (758)
Q Consensus 127 f~lnGkp~~i~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~G 204 (758)
-.+.|+++..++|-=++. .-++.++++|++.+.+..|=.+|.-.+ .|+..+.+.|++.|
T Consensus 223 ~~l~~~~v~a~sGIg~P~--------~F~~~L~~~G~~~~~~~~f~DHh~yt~-----------~dl~~l~~~a~~~~ 281 (326)
T PF02606_consen 223 EPLKGKPVLAFSGIGNPE--------RFFDTLESLGIEVVGTLAFPDHHRYTE-----------QDLEKLEAEAKAAG 281 (326)
T ss_pred hhccCCeeEEEEEcCChH--------HHHHHHHHcCCeEEEeeECCCCCCCCH-----------HHHHHHHHhhcccc
Confidence 348999999999988873 345677889999998877666665554 89999999999998
No 222
>PLN02692 alpha-galactosidase
Probab=21.04 E-value=4.4e+02 Score=30.67 Aligned_cols=69 Identities=13% Similarity=0.234 Sum_probs=46.1
Q ss_pred CCCChhhHHHHHHHH-----HHcCCCEEEEecccCcCCC-CCCee-----eeeCCCccccHHHHHHHHHHCCce--EEec
Q psy12280 144 FRVRPEYWRDRLRKL-----RAMGANTVETYIAWNLHEP-LKDVY-----EFGDNNKDIDFVKFIKIAQEEDLF--VIIR 210 (758)
Q Consensus 144 ~R~p~e~W~drL~k~-----Ka~GlNtV~tYv~Wn~HEP-~~G~f-----dF~g~~~~~DL~~Fl~la~e~GL~--VIlR 210 (758)
..+..+.-.+..+.| |++|.+.|-+=-.|...+. ..|.+ .|- .-+..+.+.+++.||+ +-.-
T Consensus 68 ~~i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP-----~G~k~ladyiH~~GLKfGIy~d 142 (412)
T PLN02692 68 CKIDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFP-----SGIKALADYVHSKGLKLGIYSD 142 (412)
T ss_pred cccCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcC-----CcHHHHHHHHHHCCCceEEEec
Confidence 345666666666654 7779999888888964332 22322 331 2379999999999997 4466
Q ss_pred CCCcccc
Q psy12280 211 PGPYICA 217 (758)
Q Consensus 211 pGPYIcA 217 (758)
+|.+.|+
T Consensus 143 ~G~~tC~ 149 (412)
T PLN02692 143 AGYFTCS 149 (412)
T ss_pred CCccccC
Confidence 7777774
No 223
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=20.88 E-value=1.3e+02 Score=34.83 Aligned_cols=89 Identities=18% Similarity=0.248 Sum_probs=50.9
Q ss_pred hhhHHHHHHHHHHcCCCEEEEecccCcCCCC--------CCeeeee-----CCC--ccccHHHHHHHH-HHCCceEEecC
Q psy12280 148 PEYWRDRLRKLRAMGANTVETYIAWNLHEPL--------KDVYEFG-----DNN--KDIDFVKFIKIA-QEEDLFVIIRP 211 (758)
Q Consensus 148 ~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~--------~G~fdF~-----g~~--~~~DL~~Fl~la-~e~GL~VIlRp 211 (758)
=+.|+++|+.++++|+|+|-.= | ++|.- .++..|+ ... ...|+.+++.-+ ++.||.++.-.
T Consensus 21 ~~~W~~~l~~~~~~GYNmIHft-P--lq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv 97 (423)
T PF14701_consen 21 FSDWEKHLKVISEKGYNMIHFT-P--LQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV 97 (423)
T ss_pred HhHHHHHHHHHHHcCCcEEEec-c--cccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE
Confidence 3589999999999999999641 1 11110 1222221 110 035899999887 57899977543
Q ss_pred CCccccccCCCC-CCcccccCCCceeccCCHhHHH
Q psy12280 212 GPYICAEWDFGG-MPSYLLREPGIKLRSMDPKYLN 245 (758)
Q Consensus 212 GPYIcAEw~~GG-lP~WL~~~p~i~~Rt~dp~y~~ 245 (758)
+ |+.=. ==.||...|+.-.-..+.++++
T Consensus 98 ---V---~NHtA~nS~Wl~eHPEagYN~~nsPHL~ 126 (423)
T PF14701_consen 98 ---V---LNHTANNSPWLREHPEAGYNLENSPHLR 126 (423)
T ss_pred ---e---eccCcCCChHHHhCcccccCCCCCcchh
Confidence 1 22111 1358888887543333334443
No 224
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=20.83 E-value=1.7e+02 Score=33.26 Aligned_cols=71 Identities=11% Similarity=0.196 Sum_probs=46.9
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCcccccc
Q psy12280 147 RPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEW 219 (758)
Q Consensus 147 p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw 219 (758)
..+...+.++.+|+.|+-.=...+-..+.. ..+.|.|+.. ..-|...+++.+++.|+.|++-.=|+|+-+-
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~-~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPE-RFPDPKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TT-TTTTHHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccc-cccchHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 366778999999999998766665533333 3444444321 1348999999999999999998888886443
No 225
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=20.81 E-value=1.4e+02 Score=25.81 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.4
Q ss_pred ccccceEEEEEECCccccCCcCCcCCcceeEEEEcc
Q psy12280 538 EGRVADIAIVMVNQERQTVPLSDVQDLNEFGFWKTE 573 (758)
Q Consensus 538 ~~~~~D~a~Vfvng~~~~~~~~~~~~~~~vG~l~~~ 573 (758)
.....|.|-||++++ |+|++.+.
T Consensus 23 rpk~~dsaEV~~g~E-------------fiGvi~~D 45 (63)
T PF11324_consen 23 RPKKDDSAEVYIGDE-------------FIGVIYRD 45 (63)
T ss_pred CCCCCCceEEEeCCE-------------EEEEEEee
Confidence 456789999999999 99999985
No 226
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=20.55 E-value=1.7e+02 Score=33.05 Aligned_cols=65 Identities=20% Similarity=0.109 Sum_probs=43.2
Q ss_pred EEEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCc-cccHHHHHHHHHHCCceEEe
Q psy12280 137 LSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNK-DIDFVKFIKIAQEEDLFVII 209 (758)
Q Consensus 137 ~sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~-~~DL~~Fl~la~e~GL~VIl 209 (758)
++-+.|+..+.+ +.|+.||++|+|.|+..|- .-.+.+..+-|+.+ ..++.+.++.|++.+..|-+
T Consensus 93 it~E~~P~~i~~----e~L~~l~~~GvnrislGvQ----S~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~ 158 (380)
T PRK09057 93 ITLEANPTSVEA----GRFRGYRAAGVNRVSLGVQ----ALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSF 158 (380)
T ss_pred EEEEECcCcCCH----HHHHHHHHcCCCEEEEecc----cCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEE
Confidence 566778777766 7889999999999999432 22223333334333 35677788888887765544
No 227
>PLN02561 triosephosphate isomerase
Probab=20.48 E-value=1.6e+02 Score=31.76 Aligned_cols=50 Identities=20% Similarity=0.030 Sum_probs=36.5
Q ss_pred HHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCC
Q psy12280 154 RLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPG 212 (758)
Q Consensus 154 rL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpG 212 (758)
-.+++|++|++.|-+ ++-|.+ ..|.=+ + ..+.+=++.|.++||.+|++.|
T Consensus 80 S~~mL~d~G~~~vii----GHSERR-~~f~Et-d---~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 80 SAEMLVNLGIPWVIL----GHSERR-ALLGES-N---EFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred CHHHHHHcCCCEEEE----Cccccc-CccCCC-h---HHHHHHHHHHHHCcCEEEEEcC
Confidence 346899999999999 444444 333222 2 5667778899999999999976
No 228
>KOG0470|consensus
Probab=20.40 E-value=1e+02 Score=37.89 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCCEEEEec---------ccCcCCCCCCeeeeeCCCc----------cccHHHHHHHHHHCCceEEecC
Q psy12280 152 RDRLRKLRAMGANTVETYI---------AWNLHEPLKDVYEFGDNNK----------DIDFVKFIKIAQEEDLFVIIRP 211 (758)
Q Consensus 152 ~drL~k~Ka~GlNtV~tYv---------~Wn~HEP~~G~fdF~g~~~----------~~DL~~Fl~la~e~GL~VIlRp 211 (758)
+++|..+|.+|.|+|+.-- .|.++- .+|---.+ ..++...++.|+++||.|+|..
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~-----~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQV-----TNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcce-----eEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 4558899999999998631 243331 22211111 2489999999999999999875
No 229
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=20.40 E-value=6.7e+02 Score=27.55 Aligned_cols=134 Identities=13% Similarity=0.157 Sum_probs=58.2
Q ss_pred HHHHHHHcCCCEEEEe---cccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEecCCCccccccCCCCCCccccc
Q psy12280 154 RLRKLRAMGANTVETY---IAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLR 230 (758)
Q Consensus 154 rL~k~Ka~GlNtV~tY---v~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIcAEw~~GGlP~WL~~ 230 (758)
.|+-..+.|+..-|+- +||..|+.. .|+|... -...|++.=++|+++||.+-+-||.|+-
T Consensus 50 ~L~~n~~~~I~~yRisS~liP~ashp~~--~~~~~~~-~~~~l~~iG~~~~~~~iRls~HP~qf~v-------------- 112 (275)
T PF03851_consen 50 ILEYNIAHGIRFYRISSDLIPLASHPEV--GWDWEEE-FAEELAEIGDLAKENGIRLSMHPDQFTV-------------- 112 (275)
T ss_dssp HHHHHHHTT--EEE--TTSSTTTTSTT----S-HHHH-HHHHHHHHHHHHHHTT-EEEE---TT----------------
T ss_pred HHHHHHHcCCCEEecCcccCCCCCCccc--ccchHHH-HHHHHHHHHHHHHHcCCeEEecCCccee--------------
Confidence 3444466776666654 679999822 2344310 0235666668889999999999999872
Q ss_pred CCCceeccCCHhHHHHHHHHHHHHHHHhhccccccCCCCEEEeccccccccCCCCcchHHHHHHHHHHHHhcCC---Ccc
Q psy12280 231 EPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNVADKNYMRELVAMLRSNGI---RSP 307 (758)
Q Consensus 231 ~p~i~~Rt~dp~y~~~v~~w~~~l~~~l~~~~~~nG~GpIImvQIENEyg~~~~y~~d~~Y~~~L~~~~~~~G~---~vp 307 (758)
+-|.++.-.+..-+-++.=...+.-+-.....+.+|-+.++=-||. ..+-++.+.+.+++.-. .+.
T Consensus 113 -----LnSp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~Ygd------K~~al~RF~~~~~~L~~~ir~rL 181 (275)
T PF03851_consen 113 -----LNSPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYGD------KEAALERFIENFKRLPESIRKRL 181 (275)
T ss_dssp -----TT-SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS-------HHHHHHHHHHHHHT--HHHHTTE
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCCC------hHHHHHHHHHHHhhCCHhhhhcE
Confidence 3344554444443333332233322222110037888888765554 44445555555444311 246
Q ss_pred eEEcCCCC
Q psy12280 308 LFTADDPS 315 (758)
Q Consensus 308 l~T~dg~~ 315 (758)
.+-+|...
T Consensus 182 ~lENDd~~ 189 (275)
T PF03851_consen 182 TLENDDKT 189 (275)
T ss_dssp EEE--SSS
T ss_pred EEecCCCc
Confidence 67777643
No 230
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=20.37 E-value=1.2e+02 Score=25.36 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=12.3
Q ss_pred eEeccccceEEEEEECCc
Q psy12280 535 MRIEGRVADIAIVMVNQE 552 (758)
Q Consensus 535 L~i~~~~~D~a~Vfvng~ 552 (758)
|.| ...-..|.|||||+
T Consensus 4 l~V-~s~p~gA~V~vdg~ 20 (71)
T PF08308_consen 4 LRV-TSNPSGAEVYVDGK 20 (71)
T ss_pred EEE-EEECCCCEEEECCE
Confidence 555 34445789999999
No 231
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=20.15 E-value=82 Score=35.18 Aligned_cols=89 Identities=18% Similarity=0.415 Sum_probs=50.0
Q ss_pred EEEEeec------CCCCChhhHHHHHHHHHHc-CCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEE
Q psy12280 136 ILSGSIH------YFRVRPEYWRDRLRKLRAM-GANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVI 208 (758)
Q Consensus 136 i~sG~~H------y~R~p~e~W~drL~k~Ka~-GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VI 208 (758)
+.||. | +.+++.+-|++-.|+-..+ |+|-.+- ||.+-++.. .-..++|++|++.|-+.|
T Consensus 105 ~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eq--fWgf~~~~~-----------~~~A~lLkl~akYGGy~i 170 (324)
T PF08306_consen 105 PSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQ--FWGFDDPGS-----------EHFADLLKLCAKYGGYFI 170 (324)
T ss_dssp EEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE----TTS--TTHH-----------HHHHHHHHHHHHTT-EEE
T ss_pred ecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhh--heecCCchh-----------HHHHHHHHHHHHhCceEE
Confidence 35666 7 4666777778877777765 9998888 566665543 245788999999998884
Q ss_pred ecCCCccccccCCC-CCCcccccCCCceeccCCHhHHHHHHHHHH
Q psy12280 209 IRPGPYICAEWDFG-GMPSYLLREPGIKLRSMDPKYLNRVRQYFN 252 (758)
Q Consensus 209 lRpGPYIcAEw~~G-GlP~WL~~~p~i~~Rt~dp~y~~~v~~w~~ 252 (758)
-- +=.++ .+-.|+.. ..++.|.+++++|.+
T Consensus 171 Ws-------~~~N~~am~k~~~~-------~~~~~~~~A~~~y~e 201 (324)
T PF08306_consen 171 WS-------DQNNPIAMEKWFGE-------QRNPEFKDACEKYSE 201 (324)
T ss_dssp EE----------GGGHHHHHCCC-------CCSHHHHHHHHHHGG
T ss_pred ee-------cCCChHHHHHhhhh-------ccCHHHHHHHHHhhh
Confidence 21 11111 11223322 167888888887443
No 232
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=20.14 E-value=2e+02 Score=27.47 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEec
Q psy12280 150 YWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIR 210 (758)
Q Consensus 150 ~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIlR 210 (758)
.-++-++++++.|+.+|.+ .-|... .....+.+.|++.|+.|+..
T Consensus 17 ~~~e~v~~A~~~Gl~~i~i----TDH~~~------------~~~~~~~~~~~~~~i~vi~G 61 (175)
T PF02811_consen 17 SPEEYVEQAKEKGLDAIAI----TDHNNF------------AGYPDFYKEAKKKGIKVIPG 61 (175)
T ss_dssp SHHHHHHHHHHTTESEEEE----EEETTT------------TTHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHcCCCEEEE----cCCccc------------ccchHHHHHHHhcCCceEEe
Confidence 4577889999999999988 566433 45689999999999998865
No 233
>KOG4039|consensus
Probab=20.09 E-value=2.3e+02 Score=29.73 Aligned_cols=87 Identities=16% Similarity=0.283 Sum_probs=47.7
Q ss_pred EEeecCCCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCee-eeeCCCccccHHHHHHHHHHCCceEEecCCCccc
Q psy12280 138 SGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVY-EFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYIC 216 (758)
Q Consensus 138 sG~~Hy~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~f-dF~g~~~~~DL~~Fl~la~e~GL~VIlRpGPYIc 216 (758)
+|.=-..|+.++|--..-+.+|+.||.++-.---=..|....=-| ...|. -++|+ ++| +..-++|+||||..|
T Consensus 98 aGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KGE-vE~~v---~eL--~F~~~~i~RPG~ll~ 171 (238)
T KOG4039|consen 98 AGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKGE-VERDV---IEL--DFKHIIILRPGPLLG 171 (238)
T ss_pred cccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccch-hhhhh---hhc--cccEEEEecCcceec
Confidence 343345689999999999999999998875522222232221011 11121 02222 111 223469999999887
Q ss_pred cccCCCCCCcccccC
Q psy12280 217 AEWDFGGMPSYLLRE 231 (758)
Q Consensus 217 AEw~~GGlP~WL~~~ 231 (758)
. ...--.-.||.+.
T Consensus 172 ~-R~esr~geflg~~ 185 (238)
T KOG4039|consen 172 E-RTESRQGEFLGNL 185 (238)
T ss_pred c-cccccccchhhhe
Confidence 4 3333333466554
No 234
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=20.02 E-value=2.3e+02 Score=30.62 Aligned_cols=51 Identities=14% Similarity=-0.029 Sum_probs=41.6
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEecccCcCCCCCCeeeeeCCCccccHHHHHHHHHHCCceEEe
Q psy12280 144 FRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVII 209 (758)
Q Consensus 144 ~R~p~e~W~drL~k~Ka~GlNtV~tYv~Wn~HEP~~G~fdF~g~~~~~DL~~Fl~la~e~GL~VIl 209 (758)
...|.+.=++.+++..+.|+..|+++++.|.. ..+...++.|+++|+.|..
T Consensus 86 ~~~p~~~~~~di~~~~~~g~~~iri~~~~~~~---------------~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 86 RHYPDDVVELFVEKAAKNGIDIFRIFDALNDV---------------RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred cCCCcHHHHHHHHHHHHcCCCEEEEeecCChH---------------HHHHHHHHHHHHCCCeEEE
Confidence 34566777889999999999999998876541 3578899999999998875
Done!