RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12280
(758 letters)
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II,
NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides
thetaiotaomicron vpi-5482}
Length = 612
Score = 473 bits (1217), Expect = e-158
Identities = 190/643 (29%), Positives = 301/643 (46%), Gaps = 64/643 (9%)
Query: 112 NKENTGLQYDDNPNTFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIA 171
+ + N TFLLNG+ F + + IHY R+ EYW R++ +A+G NT+ Y+
Sbjct: 2 SLSEGTFEVGKN--TFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKMCKALGMNTICLYVF 59
Query: 172 WNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLRE 231
WN HEP + Y+F D F ++AQE ++VI+RPGPY+CAEW+ GG+P +LL++
Sbjct: 60 WNFHEPEEGRYDFAGQK---DIAAFCRLAQENGMYVIVRPGPYVCAEWEMGGLPWWLLKK 116
Query: 232 PGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNVADKNY 291
IKLR DP Y+ RV+ + N + L LQ G G IIM+ VENE G DK Y
Sbjct: 117 KDIKLREQDPYYMERVKLFLNEVGKQLADLQISKG-GNIIMVQVENEYGAFGI---DKPY 172
Query: 292 MRELVAMLRSNGIRS-PLFTADDPSMGDSGSLIEDVLYAANI---LYAGEELRKLSYMQP 347
+ E+ M++ G PLF D S ++ +L +D+L+ N E+ ++L ++P
Sbjct: 173 ISEIRDMVKQAGFTGVPLFQCDWNSNFENNAL-DDLLWTINFGTGANIDEQFKRLKELRP 231
Query: 348 NKPLMVMEWWTGWFDTWAKNRHNTFPTNEYEMTLQSLLEYPVSLNLFMFHGGTSWGFYNG 407
+ PLM E+W+GWFD W +H T E ++ +L+ +S +L+M HGGTS+G + G
Sbjct: 232 DTPLMCSEFWSGWFDHWGA-KHETRSAEELVKGMKEMLDRNISFSLYMTHGGTSFGHWGG 290
Query: 408 ANIDKSLDKYTPDTTSYDYDAPLTEGGDYTAKYWITRKYFLQVAQNLNISHPTPPEVLPK 467
AN ++P TSYDYDAP+ E G T KY R PE
Sbjct: 291 AN----FPNFSPTCTSYDYDAPINESGKVTPKYLEVRNLL----------GNYLPEGETL 336
Query: 468 MAYDNVELGQQLTWHNLVSQIPLEKIVVSPSLIPMEDLAVNNGTGQSFGYTLYRQPDWHI 527
+ + + L + P ED+ Q +G LYR +
Sbjct: 337 PEIPDSIPTIAIPTIKMTEMAVLFDNLPHP--KESEDIRTMEAFDQGWGSILYR---TSL 391
Query: 528 PTDQDAIMRIEGRVADIAIVMVNQERQTVPLSDVQDLNEFGFWKTENAELLLNITRPANN 587
+ D A V +N ++ + L + +
Sbjct: 392 SASDKEQTLLITEAHDWAQVFLNGKKL-----ATLS------RLKGEGVVKLPPLKEGDR 440
Query: 588 IDILVENTGRVNYWLNDDFKYSNIKKGLGTSFDNVVTVNNARPQKI---WLIYALEFEQD 644
+DILVE GR+N+ K KG+ V + + + ++ W +Y + +
Sbjct: 441 LDILVEAMGRMNFG-----KGIYDWKGITEK----VELQSDKGVELVKDWQVYTIPVDYS 491
Query: 645 WVNGLSKFESVTSERNLPSPTLFQAILTITTLDDLRDTYLDMQDWTRGVVFVNGFNLGRY 704
+ + +E P +++ + ++L DT+L+M +W++G+V+VNG +GRY
Sbjct: 492 FARDKQYKQQENAEN---QPAYYRSTFNL---NELGDTFLNMMNWSKGMVWVNGHAIGRY 545
Query: 705 SRLSPYQTLYLPAPLLHLGQNKISVFE-HYRRAARLSFTDKPI 746
+ P QTLY+P L G+N+I + + A +PI
Sbjct: 546 WEIGPQQTLYVPGCWLKKGENEIIILDMAGPSKAETEGLRQPI 588
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller,
glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB:
4e8c_A
Length = 595
Score = 454 bits (1170), Expect = e-152
Identities = 210/632 (33%), Positives = 308/632 (48%), Gaps = 63/632 (9%)
Query: 125 NTFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEF 184
+ F L+GK F+ILSG+IHYFRV PE W L L+A+G NTVETY+AWNLHEP + + F
Sbjct: 8 DDFYLDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHEPCEGEFHF 67
Query: 185 GDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYL 244
+ D KF++IAQ+ L+ I+RP P+ICAEW+FGG+P++LL +++RS DP Y+
Sbjct: 68 EGDL---DLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWLLT-KNMRIRSSDPAYI 123
Query: 245 NRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNVADKNYMRELVAMLRSNGI 304
V +Y++ L+P L P +G G I+M+ VENE G DK Y+R + ++ G+
Sbjct: 124 EAVGRYYDQLLPRLVPRLLDNG-GNILMMQVENEYGSYGE---DKAYLRAIRQLMEECGV 179
Query: 305 RSPLFTADDP--SMGDSGSLIEDVLYAANILYAGEE------LRKLSYMQPNKPLMVMEW 356
PLFT+D P + +G+LIE+ L+ + PLM ME+
Sbjct: 180 TCPLFTSDGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEF 239
Query: 357 WTGWFDTWAKNRHNTFPTNEYEMTLQSLLEYPVSLNLFMFHGGTSWGFYNGANIDKSLDK 416
W GWF+ W K T E ++ +LE S+NL+MFHGGT++GF NG +
Sbjct: 240 WDGWFNRW-KEPIITRDPKELADAVREVLEQ-GSINLYMFHGGTNFGFMNGCSARG--TL 295
Query: 417 YTPDTTSYDYDAPLTEGGDYTAKYWITRKYFLQVAQNLNISHPTPPEVLPKMAYDNVELG 476
P TSYDYDA L E G+ TAKY +K A + + P M D + L
Sbjct: 296 DLPQVTSYDYDALLDEEGNPTAKYLAVKKMM---ATHFSEYPQLEPLYKESMELDAIPLV 352
Query: 477 QQLTWHNLVSQIPLEKIVVSPSLIPMEDLAVNNGTGQSFGYTLYRQPDWHIPTDQDAIMR 536
++++ + L V S ME+ GQS+GY LYR D +
Sbjct: 353 EKVSLFETLDS--LSSPVESLYPQKMEE------LGQSYGYLLYRT---ETNWDAEEERL 401
Query: 537 IEGRVADIAIVMVNQERQTVPLSDVQDLNEFGFWKTENAELLLNITRPANN-IDILVENT 595
D A + V+ + + ++ + + +DIL+EN
Sbjct: 402 RIIDGRDRAQLYVDGQWVKT-----------QYQTEIGEDIFYQGKKKGLSRLDILIENM 450
Query: 596 GRVNYWLNDDFKYSNIKKGLGTSFDNVVTVNNARPQKIWLIYALEFEQDWVNGLSKFESV 655
GRVNY F +KG+ T V + W Y L + SK +
Sbjct: 451 GRVNYG--HKFLADTQRKGIRTG----VCKDL-HFLLNWKHYPLPLDNPEKIDFSKGWTQ 503
Query: 656 TSERNLPSPTLFQAILTITTLDDLRDTYLDMQDWTRGVVFVNGFNLGRYSRLSPYQTLYL 715
P + T+ ++ +DTYLD+ ++ +GV FVNG NLGR+ + P +LY+
Sbjct: 504 G------QPAFYAYDFTV---EEPKDTYLDLSEFGKGVAFVNGQNLGRFWNVGPTLSLYI 554
Query: 716 PAPLLHLGQNKISVFE-HYRRAARLSFTDKPI 746
P L G N+I +FE + + T KP
Sbjct: 555 PHSYLKEGANRIIIFETEGQYKEEIHLTRKPT 586
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase,
glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo
sapiens} PDB: 3thc_A*
Length = 654
Score = 448 bits (1152), Expect = e-148
Identities = 204/663 (30%), Positives = 306/663 (46%), Gaps = 73/663 (11%)
Query: 112 NKENTGLQYDDNPNTFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIA 171
+ + Y + +FL +G+ FR +SGSIHY RV YW+DRL K++ G N ++TY+
Sbjct: 5 TQRMFEIDYSRD--SFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVP 62
Query: 172 WNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLRE 231
WN HEP Y+F +++ D F+++A E L VI+RPGPYICAEW+ GG+P++LL +
Sbjct: 63 WNFHEPWPGQYQFSEDH---DVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEK 119
Query: 232 PGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNVADKNY 291
I LRS DP YL V ++ L+P ++PL + +G GP+I + VENE D +Y
Sbjct: 120 ESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNG-GPVITVQVENEYGSYFAC--DFDY 176
Query: 292 MRELVAMLRSN-GIRSPLFTADDPSMGDSGSLIEDVLYAANILYAG----EELRKLSYMQ 346
+R L R + G LFT D LY G + +
Sbjct: 177 LRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCE 236
Query: 347 PNKPLMVMEWWTGWFDTWAKNRHNTFPTNEYEMTLQSLLEYPVSLNLFMFHGGTSWGFYN 406
P PL+ E++TGW D W + H+T T +L +L S+NL+MF GGT++ ++N
Sbjct: 237 PKGPLINSEFYTGWLDHWGQ-PHSTIKTEAVASSLYDILARGASVNLYMFIGGTNFAYWN 295
Query: 407 GANIDKSLDKYTPDTTSYDYDAPLTEGGDYTAKYWITRKYFLQVAQNLNISHPTPPEVLP 466
GAN Y TSYDYDAPL+E GD T KY+ R + + + P P
Sbjct: 296 GANSP-----YAAQPTSYDYDAPLSEAGDLTEKYFALRN---IIQKFEKVPEGPIPPSTP 347
Query: 467 KMAYDNVELGQQLTWHNLVSQIPLEKIVVSPSLIPMEDLAVNNGTGQSFGYTLYRQPDWH 526
K AY V L + T + + + S + + Q +G+ LYR
Sbjct: 348 KFAYGKVTLEKLKTVGAALDILCPSGPIKSLYPLTFIQV------KQHYGFVLYRTTLPQ 401
Query: 527 IPTDQDAIMRIEGRVADIAIVMVNQERQTVPLSDVQDLNEFGFWKTENAELLLNITRPAN 586
++ + V D A V V+ Q G + N L +
Sbjct: 402 DCSNPAPLSSPLNGVHDRAYVAVDGIPQ-------------GVLERNNVITLNITGKAGA 448
Query: 587 NIDILVENTGRVNYWLNDDFKYSNIKKGLGTSFDNVVTVNNARPQKIWLIYALEFEQDWV 646
+D+LVEN GRVNY Y N KGL ++ +T+++ W I+ L+ E
Sbjct: 449 TLDLLVENMGRVNYG-----AYINDFKGLVSN----LTLSS-NILTDWTIFPLDTEDAVR 498
Query: 647 ----------NGLSKFESVTSERNLPSPTLFQAILTITTL--DDLRDTYLDMQDWTRGVV 694
+G + N P + +I + D +DT++ WT+G V
Sbjct: 499 SHLGGWGHRDSGHHDEAWAHNSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQV 558
Query: 695 FVNGFNLGRY-SRLSPYQTLYLPAPLLH-LGQNKISVFE--------HYRRAARLSFTDK 744
++NGFNLGRY P TL++P +L N I+V E ++F D+
Sbjct: 559 WINGFNLGRYWPARGPQLTLFVPQHILMTSAPNTITVLELEWAPCSSDDPELCAVTFVDR 618
Query: 745 PIV 747
P++
Sbjct: 619 PVI 621
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family
GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN;
1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27
b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A*
Length = 971
Score = 310 bits (794), Expect = 7e-93
Identities = 114/558 (20%), Positives = 183/558 (32%), Gaps = 79/558 (14%)
Query: 115 NTGLQYDDNPNTFLLNGKEFRILSGSIHYFRV-RPEYWRDRLRKLRAMGANTVETYIAWN 173
+ +D++ + +NG+ I SG +H +R+ + D K++A+G N V Y+ W
Sbjct: 3 QKYVTWDEH--SIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWA 60
Query: 174 LHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPG 233
L E Y D F A+E ++++ RPGPYI AE GG P +L R G
Sbjct: 61 LLEGNPGHYSAEGIF---DLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDG 117
Query: 234 IKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNV---ADKN 290
I LR+ D YL Y +N+ + Q +G GPII+ ENE + D +
Sbjct: 118 I-LRTSDEAYLKATDNYASNIAATIAKAQITNG-GPIILYQPENEYSGACCGYNGFPDGS 175
Query: 291 YMRELVAMLRSNGIRSPLFTADDPSMGD--SGSLIEDV-LYAANILYAG----------- 336
YM+ + R GI P + D + G G+ V +Y + G
Sbjct: 176 YMQYIEDHARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPS 235
Query: 337 -----EELRKLSYMQPNKPLMVMEWWTGWFDTWAKNRHN-----TFPTNEYEMTLQSLLE 386
P+ P ++E+ G FD W E
Sbjct: 236 GNLPTYFHTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSF 295
Query: 387 YPVSLNLFMFHGGTSWGFYNGANIDKSLDKYTPDTTSYDYDAPLTEGGDYTAKYWITRKY 446
LNL+M GGT+WG TSYDY + ++E + T + + K
Sbjct: 296 GVAFLNLYMIFGGTNWGNLGHP----------GGYTSYDYGSAISESRNITREKYSELKL 345
Query: 447 FLQVAQNLNISHPTPPEVLPKMAYDNVELGQQLTWHNLVSQIPLEKIVVSPSLIPMEDLA 506
A+ P L Y N S
Sbjct: 346 LGNFAKVSPGYLVANPGDLSTSTYTNTADLTVTPLLGSNSS-------------ASSFFV 392
Query: 507 VNNGTGQSFGYTLYRQ-----------PDWH----IPTDQDAIMRIEGRVADIAIVMVNQ 551
+ + S Y+ P + I + VA I+
Sbjct: 393 IRHSDYSSQASVEYKLTVPTSAGNLTIPQLGGSLTLSGRDSKIHVTDYDVAGTNILYSTA 452
Query: 552 ERQTVPLSDVQDLNEFGFWKTENAELLLNITRPANNIDILVENTGRVNYWLNDDFKYSNI 611
E T + + + E+ E ++ ++ V K +
Sbjct: 453 EVFTWKKFNNEKVLVLYGGPGEHHEFAVSGASSSS-----VVEGSSSGISSKKVGKALVV 507
Query: 612 KKGLGTSFDNVVTVNNAR 629
+ T+ +V V + +
Sbjct: 508 AWDVSTA-RRIVQVGSLK 524
Score = 40.2 bits (93), Expect = 0.003
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 681 DTYLDMQDWTRGVVFVNGFNLGRY-SRLSPYQTLYLPAPLL-HLGQNKISV 729
R ++VNG+ G+Y + + P + +P +L + G N +++
Sbjct: 876 GNSTSTPAAYRVQLYVNGYQYGKYVNNIGPQTSFPVPEGILNYHGTNWLAL 926
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family
35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A
{Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A*
Length = 1003
Score = 310 bits (794), Expect = 1e-92
Identities = 91/393 (23%), Positives = 151/393 (38%), Gaps = 48/393 (12%)
Query: 111 KNKENTGLQYDDNPNTFLLNGKEFRILSGSIHYFRV-RPEYWRDRLRKLRAMGANTVETY 169
K + +D++ + ++G+ I SG +H FR+ P + D K++A+G NTV Y
Sbjct: 19 KGPLQNIVTWDEH--SLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFY 76
Query: 170 IAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLL 229
+ W L E + F + A + ++++ RPGPYI AE GG P +L
Sbjct: 77 VDWALLEGKPGRFRADGIF---SLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQ 133
Query: 230 REPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNV--A 287
R G KLR+ P YL+ Y ++ ++ Q +G GP+I+ ENE + V
Sbjct: 134 RVKG-KLRTDAPDYLHATDNYVAHIASIIAKAQITNG-GPVILYQPENEYSGAAEGVLFP 191
Query: 288 DKNYMRELVAMLRSNGIRSPLFTADDPSMGDSGSLIEDVLYAANILYAG----------- 336
+K YM+ ++ R+ GI PL D G L + +I
Sbjct: 192 NKPYMQYVIDQARNAGIIVPLINNDAFPGGTGAP--GTGLGSVDIYGHDGYPLGFDCAHP 249
Query: 337 ----------EELRKLSYMQPNKPLMVMEWWTGWFDTW-----AKNRHNTFPTNEYEMTL 381
+ + P+ P ++E+ G FD + + E
Sbjct: 250 SAWPDNGLPTTWRQDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYK 309
Query: 382 QSLLEYPVSLNLFMFHGGTSWGFYNGANIDKSLDKYTPDTTSYDYDAPLTEGGDYTAKYW 441
++ N++M GGT+WG TSYDY A + E + +
Sbjct: 310 NNMAAGVTIFNIYMTFGGTNWGNLGHP----------GGYTSYDYGASIREDRRIDREKY 359
Query: 442 ITRKYFLQVAQNLNISHPTPPEVLPKMAYDNVE 474
K Q + PE + Y + +
Sbjct: 360 SELKLQGQFLKVSPGYITATPENATQGVYSDSQ 392
Score = 38.2 bits (88), Expect = 0.011
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 685 DMQDWTRGVVFVNGFNLGRY-SRLSPYQTLYLPAPLL-HLGQNKISV 729
R +++VNGF G+Y S + P +P +L + G N I V
Sbjct: 912 TAAAPYRALLYVNGFQYGKYVSNIGPQTEFPVPEGILDYNGDNWIGV 958
>3u7v_A Beta-galactosidase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, TIM barrel,
glyco_hydro_42; HET: MSE; 1.80A {Caulobacter crescentus}
Length = 552
Score = 186 bits (474), Expect = 4e-51
Identities = 45/266 (16%), Positives = 95/266 (35%), Gaps = 25/266 (9%)
Query: 118 LQYDDNPNTFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEP 177
L D + +++G F +L+ ++ P + +GANTV+ IAW EP
Sbjct: 42 LVTKDGRHALMVDGAPFLMLAAQVNNSSAWPSQMAKVWPAIEKVGANTVQVPIAWEQIEP 101
Query: 178 LKDVYEFGDNNKDIDFVKFIKIAQEEDLFVI-------IRPGPYICAEW---DFGGMPSY 227
++ ++F ++ A+E + ++ P EW D P
Sbjct: 102 VEGQFDFS------YLDLLLEQARERKVRLVLLWFGTWKNSSPSYAPEWVKLDDKRFP-R 154
Query: 228 LLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQ-GPIIMLGVENELAVLGPNV 286
L+++ G + SM P + + + L+ L+ D +IM+ VENE G
Sbjct: 155 LIKDDGERSYSMSPLAKSTLDADRKAFVALMTHLKAKDAAQKTVIMVQVENETGTYG--- 211
Query: 287 ADKNYMRELVAMLRSNGIRSPL--FTADDPSMGDS-GSLIEDVLYAANILYAGEELRKLS 343
+ +++ + + + A + + G ++ +A +I +++
Sbjct: 212 SVRDFGPAAQKVFNGPAPATLVKAVGAKPGTWSQAFGKDADEFFHAWHIGRFVDQVAAGG 271
Query: 344 YMQPNKPLMVMEWWTGWFDTWAKNRH 369
P M + +
Sbjct: 272 KAVYPLP-MYVNAALRDPIKPGDPKT 296
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase,
hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp}
PDB: 3tts_A*
Length = 675
Score = 59.9 bits (144), Expect = 2e-09
Identities = 18/148 (12%), Positives = 41/148 (27%), Gaps = 17/148 (11%)
Query: 128 LLNGKEFRILSGSIHYF-RVRPEYWRDRLRKLRAMGANTVETYI-AWNLHEPLKDVYEFG 185
++N K +I G + + + +R G + + +W + + Y+F
Sbjct: 1 MINEKFPKIWYGGDYNPEQWDKATMEEDMRMFNLAGIDVATVNVFSWAKIQRDEVSYDFT 60
Query: 186 DNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPG---------IKL 236
I+ +E++++ + W P L +
Sbjct: 61 ------WLDDIIERLTKENIYLCLATSTGAHPAWMAKKYPDVLRVDYEGRKRKFGGRHNS 114
Query: 237 RSMDPKYLNRVRQYFNNLIPLLEPLQFI 264
P Y + L + I
Sbjct: 115 CPNSPTYRKYAKILAGKLAERYKDHPQI 142
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.7 bits (144), Expect = 4e-09
Identities = 85/493 (17%), Positives = 143/493 (29%), Gaps = 170/493 (34%)
Query: 129 LNGKEFRILS---GSI-HYFRVRPE--YWR-DRLRKLRAMGANTVETYIAWNLHEPLKDV 181
++ R L+ GS+ H V P ++ +L+ E + L EP +
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLV-PTASFFIASQLQ----------EQFNKI-LPEPTE-- 46
Query: 182 YEFGDNNKDID----FVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLR 237
F +++ KF+ Y+ + + + +
Sbjct: 47 -GFAADDEPTTPAELVGKFLG---------------YVSSLVEPSKVGQFD--------- 81
Query: 238 SMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNVADKNYMRELVA 297
+ LN F N L+ D L EN+ ++ KNY+ +
Sbjct: 82 ----QVLNLCLTEFENCY-----LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 298 MLR--SNGIRSPLFTADDPSMGDSGSLIEDVLYAANILYAG--------EELRKL--SYM 345
R S LF A G++ L A ++ G EELR L +Y
Sbjct: 133 AKRPFDKKSNSALFRAV--GEGNAQ------LVA---IFGGQGNTDDYFEELRDLYQTYH 181
Query: 346 QPNKPLMVM----------------EWWTGWFD--TWAKNRHNTFPTNEYEMTLQSLLEY 387
L+ + +T + W +N NT P +Y LL
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT-PDKDY------LLSI 234
Query: 388 PVSLNLFMFHGGTSWGFYNGANIDKSLDKYTPDTTSYDYDAPLTEGGD-YTA------KY 440
P+S L G Y K L +TP TA
Sbjct: 235 PISCPL---IGVIQLAHY--VVTAKLLG-FTPGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 441 WITRKYFLQVAQN-LNI-------SHPT-PPEVL-PKMAYDNVELGQQLTWHNLVSQIPL 490
W + F + + + + P L P + D++E +
Sbjct: 289 W---ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG------------ 333
Query: 491 EKIVVSPSLIPMEDLAVNNGTGQSFGYTLYRQPDWHIPTDQDAIMRIEGRVADIAIVMVN 550
PS PM L++ + Q + + H+P + + I +VN
Sbjct: 334 -----VPS--PM--LSI-SNLTQEQVQDYVNKTNSHLPAGK-----------QVEISLVN 372
Query: 551 QERQTV----PLS 559
+ V P S
Sbjct: 373 GAKNLVVSGPPQS 385
Score = 47.7 bits (113), Expect = 2e-05
Identities = 81/489 (16%), Positives = 138/489 (28%), Gaps = 187/489 (38%)
Query: 380 TLQSL------LEY--PVSLNLFMFHGGTSW-GFYNGANIDKSLDKYTPDTTSYDYDAPL 430
+ + L LE+ V F F F + + + + D D P
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASF-FIASQLQEQFN--KILPEPTEGFAAD------DEPT 55
Query: 431 TEGGDYTAKYWITRKYFLQ-VAQNLNISHPTPPEVLPKMAYDNVE----LGQQLTWHNLV 485
T + K FL V+ + S + + + E G + H L
Sbjct: 56 TPA-ELVGK-------FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--HALA 105
Query: 486 SQIPLE---KIVVSPSLI------------PMEDL-------AVNNGT--------GQSF 515
+++ E +V + LI P + AV G GQ
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ-- 163
Query: 516 G------------YTLYRQPDWHIPTDQDAIMRIEGRVADIAIVMVNQERQTVPLSDVQD 563
G Y Y D I ++++ ++ E+ + +
Sbjct: 164 GNTDDYFEELRDLYQTYH------VLVGDLIKFSAETLSELIRTTLDAEKV---FTQGLN 214
Query: 564 LNEFGFW-----KTENAELLLNIT-----------------------RPANNIDILVENT 595
+ E W T + + LL+I P L T
Sbjct: 215 ILE---WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 596 GRV------------NYWLNDDFKYSNIKKGLGTSFDNVVTVNNARPQKIWLIYALEFE- 642
G + W + F + +++K + F V A P +L
Sbjct: 272 GHSQGLVTAVAIAETDSW--ESF-FVSVRKAITVLFFIGVRCYEAYPN-----TSLPPSI 323
Query: 643 -QDWVNGLSKFESVTSERNLPSPTLFQAI--LTITTLD---DLRDTYLDMQDWTRGVVFV 696
+D S+ + +PSP L +I LT + + +++L + V
Sbjct: 324 LED---------SLENNEGVPSPML--SISNLTQEQVQDYVNKTNSHLPAGKQVE-ISLV 371
Query: 697 NG---FNL-GRYSRLSPYQTLYLPAPLLH-------LGQNKISVFEHYRRAARLSFTDKP 745
NG + G P Q+LY L L Q++I R K
Sbjct: 372 NGAKNLVVSG------PPQSLYGLNLTLRKAKAPSGLDQSRI---PFSER--------KL 414
Query: 746 IVRNFQHRF 754
F +RF
Sbjct: 415 ---KFSNRF 420
Score = 45.4 bits (107), Expect = 7e-05
Identities = 40/236 (16%), Positives = 76/236 (32%), Gaps = 64/236 (27%)
Query: 142 HYFRV------RPEYWRDRLRKLRAMGANTVE-TYIA----WNLHEPLKDVYEFGDNNKD 190
HY P R L+ V IA W F +
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE---------SFFVS--- 295
Query: 191 IDFVKFIKIAQEEDLFVI-IR-----PGPYICAE-----WDFG-GMPSYLLREPGIKLRS 238
K I + LF I +R P + + G+PS +L + +
Sbjct: 296 --VRKAITV-----LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS-----ISN 343
Query: 239 MDPKYLNRVRQYFNNLIPLLEPLQF--IDGQ------GPIIML-GVENEL-AVLGPNVAD 288
+ + + N+ +P + ++ ++G GP L G+ L P+ D
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 289 KNYM----RELVAMLRSNGIRSPLFTADDPSMGDSGSLIEDVLYAANILYAGEELR 340
++ + R+L R + SP + + + LI L N+ + ++++
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHS---HLLVPASDLINKDLVKNNVSFNAKDIQ 456
Score = 35.8 bits (82), Expect = 0.063
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 18/91 (19%)
Query: 81 PVTTDSEILMTSSEDGG----SPI--ITNYIYYEFEK--NKENTGLQYDDNPNTFLLNGK 132
P T+ ++ S + SP+ I+N + + NK N+ L L+NG
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 133 EFRILSG---SIHYFRVRPEYWRDRLRKLRA 160
+ ++SG S++ + LRK +A
Sbjct: 375 KNLVVSGPPQSLYGLNL-------TLRKAKA 398
Score = 31.6 bits (71), Expect = 1.2
Identities = 58/351 (16%), Positives = 104/351 (29%), Gaps = 157/351 (44%)
Query: 362 DTWAKNRHNTFPTNEYEMTLQSL-LEYPVSLNLFMFHGGTSWG--------------FYN 406
D W NR + + Y ++ + + PV+L H G G +
Sbjct: 1644 DVW--NRADNHFKDTYGFSILDIVINNPVNL---TIHFGGEKGKRIRENYSAMIFETIVD 1698
Query: 407 GANIDKSLDK-YTPDTTSYDYDAP-----LTEGGDYTAKYWITRKYFLQVAQNLNISHPT 460
G + + K +TSY + + T+ +T Q A +
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ---FT-----------QPA----L---- 1736
Query: 461 PPEVLPKMAYDNVELGQQLTWHNLVSQ--IPLEKIV-----------VSPS-LIPMEDLA 506
+E + +L S+ IP + S + ++ +E L
Sbjct: 1737 -------TL---MEKAA---FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV 1783
Query: 507 --VNNGTGQSFGYTLYR-QPDWHIPTDQDAIMRIEGRVADIAIVMVNQERQTVPLSDVQD 563
V YR T Q A+ R E ++ ++ +N P
Sbjct: 1784 EVVF-----------YRGM------TMQVAVPRDELGRSNYGMIAIN------PGRVAAS 1820
Query: 564 LNEFGFWKTENAELLLNITRPANNIDILVENTGR----VNYWLNDDFKYSNI-------- 611
++ E L + ++ + + TG VNY N+
Sbjct: 1821 FSQ---------EALQYV------VERVGKRTGWLVEIVNY---------NVENQQYVAA 1856
Query: 612 --KKGLGTSFDNVVTV-NNARPQKIWLIYALEFEQDWVNGLSKFESVTSER 659
+ L D V V N + QKI +I L+ +S++ E
Sbjct: 1857 GDLRAL----DTVTNVLNFIKLQKIDII-ELQ------------KSLSLEE 1890
Score = 30.0 bits (67), Expect = 3.5
Identities = 31/203 (15%), Positives = 63/203 (31%), Gaps = 56/203 (27%)
Query: 8 SLQEYP----DPQNERDKVTRNKKPYIGLACLLLGL--LTISMMILKISS-DTKICENKL 60
+ YP P D + N+ G+ +L + LT + ++ ++ + K
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNE----GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK- 364
Query: 61 DLKISESNVNNPADVDINGLPVTTDSEILMTSSEDGGSPIITNYIYYEFEKNKENTGLQY 120
++ S VN ++ ++G P + L + +P + F + K ++
Sbjct: 365 --QVEISLVNGAKNLVVSGPPQSLYG--LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 121 ---------------------DDNPNTFLLNGKEFRILSGSIHYFRVRPEY----WRDRL 155
D N N K+ +I P Y D
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI-----------PVYDTFDGSD-- 467
Query: 156 RKLRAMGANTVETYIAWNLHEPL 178
LR + + E + + P+
Sbjct: 468 --LRVLSGSISERIVDCIIRLPV 488
Score = 29.2 bits (65), Expect = 6.5
Identities = 21/132 (15%), Positives = 35/132 (26%), Gaps = 42/132 (31%)
Query: 57 ENKLDLKISESNVNNPADVDI-NGLPVTTDSEILMTSSEDGGSPIITNYIYYEFEKNKEN 115
++ I + +NNP ++ I G G I NY FE +
Sbjct: 1654 KDTYGFSILDIVINNPVNLTIHFGGE--------------KGKRIRENYSAMIFETIVDG 1699
Query: 116 T--------GLQYDDNPNTF-----LLNGKEF---RILSGSIHYFRVRPEYWRDRLRKLR 159
+ TF LL+ +F + F L+
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED-----------LK 1748
Query: 160 AMGANTVETYIA 171
+ G + A
Sbjct: 1749 SKGLIPADATFA 1760
Score = 28.9 bits (64), Expect = 7.8
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 38/76 (50%)
Query: 446 YFLQVAQNLNISHPTPPEVLPKMAYDNVELGQQ------------LTWHNLVS-----QI 488
+ +++ N N+ QQ +T N+++ +I
Sbjct: 1839 WLVEIV-NYNVE------------------NQQYVAAGDLRALDTVT--NVLNFIKLQKI 1877
Query: 489 PLEKIVVSPSLIPMED 504
+ ++ S SL +E
Sbjct: 1878 DIIELQKSLSLEEVEG 1893
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 5e-09
Identities = 74/507 (14%), Positives = 155/507 (30%), Gaps = 155/507 (30%)
Query: 367 NRHNTFPTNEYEMTLQSLLEYPVSLNLFMFHGGTSWGFYNGANIDKSLD-KYTPDT---- 421
+ H F T E++ + +L V + F+ + D K D
Sbjct: 4 HHHMDFETGEHQYQYKDIL--SVFEDAFV----------------DNFDCKDVQDMPKSI 45
Query: 422 -TSYDYDAPLTEGGDYTAKY---WITR-------KYFLQVAQNLNIS-----------HP 459
+ + D + + W + F++ +N P
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 460 TPPEVLPKMAYDNV-ELGQQLTWHNLVSQIPLEKIVVS-PSLIPMEDLAVN--NGTGQS- 514
+ + D + Q +N+ P K+ + L P +++ ++ G+G++
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 515 -----------------------FGY------------TLYRQ--PDWHIPTDQDA--IM 535
L Q P+W +D + +
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 536 RIEGRVADIAIVMVNQERQT--VPLSDVQD---LNEFGFWKTENAELLLNITRPANNIDI 590
RI A++ ++ ++ + + L +VQ+ N F + ++LL TR D
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL----SCKILL-TTRFKQVTDF 280
Query: 591 LVENTGRVNYWLNDD---FKYSNIK----KGLGTSFDN----VVTVNNARPQKIWLIYAL 639
L T + L+ +K K L + V+T N P+++ +I
Sbjct: 281 LSAAT-TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PRRLSIIAES 336
Query: 640 EFEQDWVNGLSKFESVTSERNLPSPTLFQAILTITTLDDLRDTYLDM----QD------- 688
+D + ++ V ++ T+ ++ L + + R + +
Sbjct: 337 --IRDGLATWDNWKHVNCDKLT---TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 689 ----WTRGV-----VFVNGFNLGRYS---RLSPYQTLYLPAPLLHLGQNK-------ISV 729
W + V VN + +YS + T+ +P+ L L S+
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLH--KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 730 FEHYRRAARLSFTD--KPIVRN--FQH 752
+HY D P + + H
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Score = 46.4 bits (109), Expect = 4e-05
Identities = 56/407 (13%), Positives = 110/407 (27%), Gaps = 140/407 (34%)
Query: 5 NYTSLQEYPDP-----QNERDKVTR--NKKPYIGLACLLLGLLTISMMILKISSDTKICE 57
N+TS ++ + + ++ R KPY CLL+
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--NCLLV-------------------- 249
Query: 58 NKLDLKISESNVNNPADVDINGLPVTTDSEILMTSSEDGGSPIITNYIYYEFEKNKENTG 117
L NV N + +IL+T+ + ++ + +
Sbjct: 250 --LL------NVQNAKAWN----AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 118 LQYDDNPNTFL--LNGKEFR--------------ILSGSIHYFRVRPEYWR----DRLRK 157
L D+ + L L+ + I++ SI + W+ D+L
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 158 LRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICA 217
+ N +E + +++ F I P +
Sbjct: 358 IIESSLNVLEPAE-------YRKMFD--------RLSVF-----PPS--AHI-PTILLSL 394
Query: 218 EWDFGGMPSYLLREPGIKL--RSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPI----- 270
W + + KL S+ K ++ LE ++ + +
Sbjct: 395 IW--FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--YLELKVKLENEYALHRSIV 450
Query: 271 ----IMLGVENELAVLGPNVADKNY-------------MRELVAMLR---------SNGI 304
I +++ L P D Y E + + R I
Sbjct: 451 DHYNIPKTFDSD--DLIPPYLD-QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 305 RSPLFTADDPSMGDSGSLIEDVLYAANILYAGEELRK-LSYMQPNKP 350
R D + SGS++ + +L+ Y+ N P
Sbjct: 508 R-----HDSTAWNASGSILNTLQ----------QLKFYKPYICDNDP 539
Score = 38.3 bits (88), Expect = 0.011
Identities = 94/637 (14%), Positives = 182/637 (28%), Gaps = 214/637 (33%)
Query: 1 MSAYNYTSLQEYPDPQN-ERDKVTRNKKPYIGLACLLLGL-----LTI--------SMMI 46
Y + Y D Q + V+R +PY+ L LL L + I + +
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 47 LKISSDTKICENKLDLKISESNVNNPADVDINGLPVTTDSEILMTSSEDGGSPIITNYIY 106
L + K+ + K+D KI N+ N + +L + +
Sbjct: 168 LDVCLSYKV-QCKMDFKIFWLNLKN----------CNSPETVL----------EMLQKLL 206
Query: 107 YEFEKNKENTGLQYDDNPNTFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTV 166
Y+ + N D+ + ++R + LR+L
Sbjct: 207 YQIDPN----WTSRSDHSSNI-----------------KLRIHSIQAELRRL-------- 237
Query: 167 ETYIAWNLHEP----LKDVYE------FGDNN-------KDIDFVKFIKIAQEEDLFVII 209
+ +E L +V F + + + F+ A + +
Sbjct: 238 ---LKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 210 RPGPY-------ICAEWDFGGMPSYLLRE-----P------GIKLRSMDPKYLNRVRQY- 250
+ ++ P L RE P +R + +
Sbjct: 294 HSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDG-LATWDNWKHVN 351
Query: 251 FNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNVADKNYMRELVAMLRSNGIRSPLFT 310
+ L ++E ++ P + + L+V P+ + L++++ + I+
Sbjct: 352 CDKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSA---HIPTILLSLIWFDVIK----- 401
Query: 311 ADDPSMGDSGSLIEDVLYAANILYAGEELRKLSYMQPNKPLMVMEWWTGWFDTWAKNRHN 370
D V+ +L K S +V +
Sbjct: 402 -SDV---------MVVV---------NKLHKYS--------LVEKQP------------- 421
Query: 371 TFPTNEYEMTLQSL-LEYPVSL-NLFMFHGGTSWGFYNGANIDKSLDKYTPDTTSYDYDA 428
E +++ S+ LE V L N + H +D Y ++D D
Sbjct: 422 ----KESTISIPSIYLELKVKLENEYALH-------------RSIVDHYNI-PKTFDSDD 463
Query: 429 PLTEGGDYTAKYWITRKYFLQVAQNL-NISHPTPPEVLPKMAYDNVELGQQLTWHNLVSQ 487
+ D +Y+ + + +L NI HP + + D +
Sbjct: 464 LIPPYLD---QYF-----YSHIGHHLKNIEHPERMTLFRMVFLD-------FRF------ 502
Query: 488 IPLE-KIVVSPSLIPMEDLAVNNGTGQSFGYTLYRQPDWHIPTDQDAIMRIEGRVADIAI 546
LE KI + +N T Q + Y+ +I D D + E V I
Sbjct: 503 --LEQKIRHDSTAWNASGSILN--TLQQLKF--YKP---YI-CDNDP--KYERLVNAILD 550
Query: 547 VMVNQERQTVPLSDVQDLNEFGFWKTENAELLLNITR 583
+ E + S DL E+ + +
Sbjct: 551 FLPKIEENLI-CSKYTDLLRIAL-MAEDEAIFEEAHK 585
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42,
trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP:
b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*
Length = 645
Score = 56.4 bits (135), Expect = 2e-08
Identities = 30/157 (19%), Positives = 47/157 (29%), Gaps = 22/157 (14%)
Query: 148 PEYWRDRLRKLRAMGANTVETYI-AWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLF 206
E W++ R++R G + V AW L EP E+G + I E L
Sbjct: 13 KERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWG------WLDEAIATLAAEGLK 66
Query: 207 VIIRPGPYICAEWDFGGMPSYLLREP-GIKLRS--------MDPKYLNRVRQYFNNLIPL 257
V++ +W P L + G + R P Y R+ L
Sbjct: 67 VVLGTPTATPPKWLVDRYPEILPVDREGRRRRFGGRRHYCFSSPVYREEARRIVTLLA-- 124
Query: 258 LEPLQFIDGQGPIIMLGVENELAVLGPNVADKNYMRE 294
+ G + +NE +E
Sbjct: 125 ----ERYGGLEAVAGFQTDNEYGCHDTVRCYCPRCQE 157
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro
structure initiative, NEW YORK SGX research center for
STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis}
Length = 667
Score = 42.4 bits (100), Expect = 5e-04
Identities = 40/290 (13%), Positives = 81/290 (27%), Gaps = 88/290 (30%)
Query: 127 FLLNGKEFRILSGSIHYFR------VRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKD 180
F LNGK + H R +RP++ + + +R MG N + A
Sbjct: 276 FFLNGKHLPLHGVCRHQDRAEVGNALRPQHHEEDVALMREMGVNAIRL--AHYPQAT--- 330
Query: 181 VYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIK----- 235
+ + + I G + + +
Sbjct: 331 --------------YMYDLMDKHGIVTWAE----IPFVGPGGYADKGFVDQASFRENGKQ 372
Query: 236 -LRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGP-IIMLGVENELAVLGPNVADKNYMR 293
L + +RQ++N+ P I G+ NEL +G N + Y++
Sbjct: 373 QLIEL-------IRQHYNH---------------PSICFWGLFNELKEVGDNPVE--YVK 408
Query: 294 ELVAMLRSNGIRSPLFTADDPS--------MGDSGSLIEDVL--------YAANILYAGE 337
EL A+ + DP+ + + I + + Y +
Sbjct: 409 ELNALAKQE----------DPTRPTTSASNQDGNLNFITENIAWNRYDGWYGSTPKTLAT 458
Query: 338 ELRKLSYMQPNKPLMVMEW--WTGWFDTWAKNRHNTFPTNEYEMTLQSLL 385
L + P + + E+ + + + + Q+
Sbjct: 459 FLDRTHKKHPELRIGISEYGAGASIYHQQDSLKQPSASGWWHPENWQTYY 508
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine,
glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis
orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5
c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A*
2vzu_A*
Length = 1032
Score = 40.0 bits (93), Expect = 0.003
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 119 QYDDNPNTFLLNGKEFRILSGSIH---YFRVRPEYWRDRLRKLRAMGANTV 166
+ +NGK I G + R D+L+ + +G NTV
Sbjct: 341 LNSSGGRQYSVNGKPLLIRGGGYTPDLFLRWNETAAADKLKYVLNLGLNTV 391
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas
hydrolase, PSI-2, protein structure initiative; 2.70A
{Bacteroides fragilis}
Length = 692
Score = 39.3 bits (92), Expect = 0.004
Identities = 47/295 (15%), Positives = 84/295 (28%), Gaps = 78/295 (26%)
Query: 122 DNPNTFLLNGKEFRILSGSIHYFR------VRPEYWRDRLRKLRAMGANTVETYIAWNLH 175
F LNG+++ + + H ++ E+ L + +GA TV A
Sbjct: 285 VAGKGFFLNGEKYSMYGVTRHQDWWGLGSALKNEHHDFDLAAIMDVGATTVRF--AHYQQ 342
Query: 176 EPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIK 235
L + I G + + +
Sbjct: 343 SD-----------------YLYSRCDTLGLIIWAE----IPCVNRVTGYETENAQS---Q 378
Query: 236 LRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGP-IIMLGVENELAVLGPNVADKNYMRE 294
LR + +RQ FN+ P I + G+ NE+ A R
Sbjct: 379 LREL-------IRQSFNH---------------PSIYVWGLHNEVYQPHEYTAA--LTRS 414
Query: 295 LVAMLRS-NGIRSPLFTADDPSMGDSGSLIEDVL--------YAANILYAGEELRKLSYM 345
L + ++ + R + M +L D+ Y I + +L
Sbjct: 415 LHDLAKTEDPDRYTVSVNGYGHMDHPVNLNADIQGMNRYFGWYEKKIQDIKPWVEQLEKD 474
Query: 346 QPNKPLMVMEWWTGW-----------FDTWAKNRH-NTFPTNEYEMTLQSLLEYP 388
P + LM+ E+ W K + TF T +E + ++P
Sbjct: 475 YPYQKLMLTEYGADANLAHQTEYLGDALNWGKPFYPETFQTKTHEYQWSIIKDHP 529
>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside
hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP:
c.1.8.3
Length = 373
Score = 38.8 bits (89), Expect = 0.006
Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 13/141 (9%)
Query: 125 NTFLLNGKEFRILSGSIHYFRVR------PEYWRDRLRKLRAMGANTVETYI-AWNLHEP 177
F LNGK I + ++ + ++ N T+ + P
Sbjct: 12 THFALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTWAFSHGGSRP 71
Query: 178 LKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYL--LREPGIK 235
L+ + I A++ + +I+ + FGG Y+ + G K
Sbjct: 72 LQSAPGVYNEQMFQGLDFVISEAKKYGIHLIM---SLVNNWDAFGGKKQYVEWAVQRGQK 128
Query: 236 LRSMDPKYLNR-VRQYFNNLI 255
L S D + N V+ ++ N +
Sbjct: 129 LTSDDDFFTNPMVKGFYKNNV 149
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 343
Score = 37.4 bits (86), Expect = 0.012
Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 15/153 (9%)
Query: 152 RDRLRKLRAMGANTVETYIAWNLHEP--LKDVYEFGDNNKDIDFVKFIKIAQEEDLFVII 209
R +R L N V A + P Y D + ++A L V +
Sbjct: 56 RASMRALAEQPFNWVTLAFAGLMEHPGDPAIAYGPPVTVSDDEIASMAELAHALGLKVCL 115
Query: 210 RPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGP 269
+P G I+ L +F + ++ + +
Sbjct: 116 KPTVNCRDGTWRG----------EIRFEKEHGPDLESWEAWFGSYSDMMAHYAHVAKRTG 165
Query: 270 IIMLGVENELAVLGPNVADKNYMRELVAMLRSN 302
M V E+ P+ A RE +A +R+
Sbjct: 166 CEMFCVGCEMTTAEPHEA---MWRETIARVRTE 195
>1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase,
mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio
mixtus} SCOP: c.1.8.3 PDB: 1uz4_A*
Length = 440
Score = 35.8 bits (81), Expect = 0.050
Identities = 22/117 (18%), Positives = 36/117 (30%), Gaps = 18/117 (15%)
Query: 127 FLLNGKEFRILSGSIHYFRVRPEYW--------RDRLRKLRAMGANTVETYIAWNLHEP- 177
F L GK + I ++ Y L L+A+G N + E
Sbjct: 32 FELQGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLKAIGVNNLRVLAVSEKSEIN 91
Query: 178 --LKDVYEFGDNNKDID----FVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYL 228
+K G N D + + D+ V++ + GGM Y+
Sbjct: 92 SAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVL---YFNNFWQWSGGMTQYM 145
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide
degradation, glycoside hydrolase family 5, hydrolase,
glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB:
2ckr_A*
Length = 306
Score = 34.8 bits (80), Expect = 0.095
Identities = 45/334 (13%), Positives = 89/334 (26%), Gaps = 75/334 (22%)
Query: 130 NGKEFRI----LSGSIHYFRVRPEYWRDRLRKLRA-MGANTVETYIAWNLHEPLKDVYEF 184
+G ++ G + L L A+ + + + F
Sbjct: 22 HGNPVQLRGMSTHGIQWF---DHCLTDSSLDALAYDWKADIIRLSMYIQEDGYETNPRGF 78
Query: 185 GDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDF-GGMPSYLLREPGIKLRSMDPKY 243
D + + I +A L+VI+ G P Y
Sbjct: 79 TD---RMH--QLIDMATARGLYVIVDW-------HILTPGDPHY---------------N 111
Query: 244 LNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNVAD-KNYMRELVAMLRSN 302
L+R + +F + ++ + NE G + A K+Y E++ ++R
Sbjct: 112 LDRAKTFFAEIAQRH-------ASKTNVLYEIANE--PNGVSWASIKSYAEEVIPVIRQR 162
Query: 303 GIRSPLF-------TADDPSMGDSGSLIEDVLYAANILYA---------GEELRKLSYMQ 346
S + + + + + A+NI+YA L L
Sbjct: 163 DPDSVIIVGTRGWSSLGVSEGSGPAEIAANPVNASNIMYAFHFYAASHRDNYLNALREAS 222
Query: 347 PNKPLMVMEWWTGWFDTWAKNRHNTFPTNEYEMTLQSLLEYPVSLNLFMFHGGTSWGFYN 406
P+ V E+ T + N ++ + G T W + +
Sbjct: 223 ELFPVFVTEFGTETYTGDGANDFQMA---------DRYIDLMAERKI----GWTKWNYSD 269
Query: 407 GANIDKSLDKYTPDTTSYDYDAPLTEGGDYTAKY 440
T + + L G +
Sbjct: 270 DFRSGAVFQPGTCASGGPWSGSSLKASGQWVRSK 303
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET:
SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A*
2osw_A* 2oyl_A* 2oym_A* 2osy_A*
Length = 481
Score = 34.2 bits (77), Expect = 0.19
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 12/94 (12%)
Query: 120 YDDNPNTFLLNGKEFRI-LSGSIHYF--RVRPEYWRDRLRKLRAMGANTVETYIAWNLHE 176
DD+ + +L G + S + D R+ MG N V I+W E
Sbjct: 38 KDDDGRSLILRG----FNTASSAKSAPDGMPQFTEADLAREYADMGTNFVRFLISWRSVE 93
Query: 177 PLKDVYEFGDNNKDIDFV-KFIKIAQEEDLFVII 209
P VY + + +D V + E V++
Sbjct: 94 PAPGVY----DQQYLDRVEDRVGWYAERGYKVML 123
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.20
Identities = 6/20 (30%), Positives = 8/20 (40%), Gaps = 6/20 (30%)
Query: 410 IDKSLDKYTPDTTSYDYDAP 429
+ SL Y D+ AP
Sbjct: 25 LQASLKLYADDS------AP 38
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta
barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3
Length = 353
Score = 32.8 bits (74), Expect = 0.45
Identities = 11/100 (11%), Positives = 27/100 (27%), Gaps = 15/100 (15%)
Query: 125 NTFLLNGKEFRIL-----------SGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWN 173
NG + + + + L +++ G N+V ++
Sbjct: 10 TNLNYNGHHIFLSGANQAWVNYARDFGHNQYSKGKSTFESTLSDMQSHGGNSVRVWLHIE 69
Query: 174 LHEPLK----DVYEFGDNNKDIDFVKFIKIAQEEDLFVII 209
+ DN D ++ AQ ++ +
Sbjct: 70 GESTPEFDNNGYVTGIDNTLISDMRAYLHAAQRHNILIFF 109
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea
batatas} SCOP: c.1.8.1
Length = 498
Score = 31.6 bits (71), Expect = 1.0
Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 146 VRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKD-VYEFGDNNKDIDFVKFIKIAQEED 204
E D L++++A G + V + W + E Y++ + + ++ ++
Sbjct: 31 PDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWS------AYRELFQLVKKCG 84
Query: 205 LFVIIRPGPYICAEWD 220
L + + C
Sbjct: 85 LKIQAIMSFHQCGGNV 100
>3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta
barrel, glycosyl hydrolase, sugar binding, secret
hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A
3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A*
Length = 383
Score = 31.4 bits (70), Expect = 1.2
Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 19/119 (15%)
Query: 126 TFLLNGKEFRILSGSIHYFRVRPEYWRDR-LRKLRAMGANTVETYIAWNLHEPLKDVYEF 184
+ +LNGKEFR + + +Y + D L R MG + + + +D +
Sbjct: 19 SHMLNGKEFRFIGSNNYYMHYKSNRMIDSVLESARDMGIKVLRIWGFLDGESYCRDKNTY 78
Query: 185 GDNNKDID---------------FVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYL 228
+ I A+E + +II + DFGGM Y+
Sbjct: 79 MHPEPGVFGVPEGISNAQNGFERLDYTIAKAKELGIKLII---VLVNNWDDFGGMNQYV 134
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics,
pyruvate-formate lyase-activating enzym MCSG,
APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Length = 182
Score = 30.3 bits (69), Expect = 1.3
Identities = 23/174 (13%), Positives = 54/174 (31%), Gaps = 30/174 (17%)
Query: 148 PEYWRDRLRKLRAMGANT-VET--YIAWNLHEPLKDVYEFGDNNKDIDFVKF-IKIAQEE 203
PE+ D L++ G + V+T + + + + +K
Sbjct: 18 PEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVMRN---------CELLLIDLKSMDST 68
Query: 204 --------DLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLI 255
+I++ + Y +R P I+ + D K + ++ +L
Sbjct: 69 VHQTFCDVPNELILKNIRRVAEA-----DFPYYIRIPLIEGVNADEKNIKLSAEFLASLP 123
Query: 256 PLLEPLQFI----DGQGPIIMLGVENELAVLGPNVADKNYMRELVAMLRSNGIR 305
E + + G+G LG + ++ + +L G++
Sbjct: 124 RHPEIINLLPYHDIGKGKHAKLGSIYNPKGYKMQTPSEEVQQQCIQILTDYGLK 177
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural
genomics, glycosidase, PSI-2, protein initiative; 2.40A
{Bacteroides vulgatus}
Length = 801
Score = 30.5 bits (69), Expect = 2.3
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 127 FLLNGKEFRILSGSIHYFR------VRPEYWRDRLRKLRAMGANTV 166
FLLNGK +I H+ V + RL+ L+ MG N +
Sbjct: 279 FLLNGKSLKIKGVCDHHTVGAVGAAVPDDLLHYRLKLLKDMGCNAI 324
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 30.6 bits (70), Expect = 2.3
Identities = 21/107 (19%), Positives = 31/107 (28%), Gaps = 38/107 (35%)
Query: 221 FGGMPS--------YLLREPGIKLRSMDPKYLNRVRQYFNNLIP-------LLEPLQFID 265
FG Y LR+ + R I ++EP+Q
Sbjct: 182 FGPFAPEVYRMPASYPLRDE---PGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQ--- 235
Query: 266 GQGPIIMLGVENELAVLGPNVADKNYMRELVAMLRSNGIRSPLFTAD 312
G+G G V ++ L A NG+ +F AD
Sbjct: 236 GEG--------------GFIVPAPGFLATLTAWASENGV---VFIAD 265
>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis,
aromatic amino acid biosynthe schiff base, lyase; 1.60A
{Streptococcus mutans}
Length = 259
Score = 30.0 bits (67), Expect = 2.4
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 80 LPVTTDSEILMT--SSEDGGSPIITNYIYYE-FEKNKENTGLQYDD----NPNTFLLNGK 132
+ E++ T + ++GG+ ++N Y Y D + L
Sbjct: 83 FEKFSGHEVIFTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYIDFEYFSYRDVLEEMY 142
Query: 133 EFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTV 166
+F L S H F PE + +L A+ V
Sbjct: 143 DFSNLILSYHNFEETPENLMEVFSELTALAPRVV 176
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 30.2 bits (69), Expect = 2.4
Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 37/109 (33%)
Query: 221 FGGMPS--------YLLREP--GIKLRSMDPKYLNRVRQYFNNLIP-------LLEPLQF 263
FG Y R+ G +L + R + I ++EP+Q
Sbjct: 179 FGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQ- 237
Query: 264 IDGQGPIIMLGVENELAVLGPNVADKNYMRELVAMLRSNGIRSPLFTAD 312
G+G G V ++ L+ R N + +F AD
Sbjct: 238 --GEG--------------GFIVPADGFLPTLLDWCRKNDV---VFIAD 267
>4ayb_C DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_C
4b1o_C 4b1p_Y 2waq_C 2wb1_C 3hkz_C 2pmz_C
Length = 395
Score = 30.1 bits (67), Expect = 2.9
Identities = 30/229 (13%), Positives = 69/229 (30%), Gaps = 42/229 (18%)
Query: 87 EILMTSSEDGGSPIITNYIYYEFEKNKENTGLQYDDNPNTFLLNGKEFRILSGSIHYFRV 146
EI+ +P++T Y+ E++ D + E+ + + +
Sbjct: 109 EIVDAKKVPS-TPMMTIYLTDEYKH---------DKEKALEVARKLEYTKIENVVSSTSI 158
Query: 147 RPEYWRDRLRKLRAMGANTVETY--IAWNLHEPLKDVYEFGDNNKDIDFVKFIKI----- 199
L+ M + T + ++ + ++ + + F I
Sbjct: 159 DIASMSIILQLDNEMLKDKGVTVDDVKKAINRLKLGEFVIDESEGNTLNISFANIDSIAA 218
Query: 200 ---AQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRS-MDPKYLNRVRQYFNNLI 255
+++ L I+ I Y++ G L + K ++ + NN+
Sbjct: 219 LFKLRDKILNTKIKGIKGIKRAIVQKKGDEYIILTDGSNLSGVLSVKGVDIAKVETNNIR 278
Query: 256 PLLEPLQFIDGQGPIIMLGVENELAVLGPNVADKNYMRELVAMLRSNGI 304
+ E V G A + +RE+ +L G+
Sbjct: 279 EIEE---------------------VFGIEAAREIIIREISKVLAEQGL 306
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA
repair, endonuclease, DNA binding protein; HET: DNA;
1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A*
2jpd_A*
Length = 146
Score = 29.1 bits (65), Expect = 3.4
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 115 NTGLQYDDNPNTFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTV 166
N ++ D ++L G+ L S+ Y + P+Y RL+ L A V
Sbjct: 37 NVPWEFGDVIPDYVL-GQSTCALFLSLRYHNLHPDYIHGRLQSLGKNFALRV 87
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 29.8 bits (68), Expect = 3.6
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 27/80 (33%)
Query: 240 DPKYLNRVRQYFNNLIP-------LLEPLQFIDGQGPIIMLGVENELAVLGPNVADKNYM 292
+ + + + F N ++EP+Q G+G G + +M
Sbjct: 180 EDDAIASIHRIFKNDAAPEDIAAIVIEPVQ---GEG--------------GFYASSPAFM 222
Query: 293 RELVAMLRSNGIRSPLFTAD 312
+ L A+ +GI + AD
Sbjct: 223 QRLRALCDEHGI---MLIAD 239
>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus
pyogenes, dehydroshikimate, PSI-2, protein ST
initiative; HET: MSE; 1.85A {Streptococcus pyogenes
serotype M1}
Length = 231
Score = 29.2 bits (65), Expect = 4.2
Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 11/129 (8%)
Query: 45 MILKISSDTKICENKLDLKISESNVNNPADVDINGLPVTTDSEILMT--SSEDGGSPIIT 102
+ + D + E + D + V + EI+ T + ++GG+ ++
Sbjct: 21 IDISKYEDVNLIEWRADFLPKDEIVAVAPAI----FEKFAGKEIIFTLRTVQEGGNITLS 76
Query: 103 NYIYYEFEKNK-ENTGLQYDD----NPNTFLLNGKEFRILSGSIHYFRVRPEYWRDRLRK 157
+ Y + K Y D + +F L S H F PE + +
Sbjct: 77 SQEYVDIIKEINAIYNPDYIDFEYFTHKSVFQEMLDFPNLILSYHNFEETPENLMEAFSE 136
Query: 158 LRAMGANTV 166
+ + V
Sbjct: 137 MTKLAPRVV 145
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural
genomics, IDP90671, center for structural genomic
infectious diseases; HET: MSE; 1.87A {Campylobacter
jejuni subsp} PDB: 3o6d_A*
Length = 260
Score = 28.8 bits (65), Expect = 5.9
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 15/55 (27%)
Query: 288 DKNYMRELVAMLRSNGIRSPLFTADDPSMGDSGSLIEDVLYAANI------LYAG 336
+ +++ + L++ I LF +PS +ED+ + + L+ G
Sbjct: 109 NHAKLKQSIEKLQNANIEVSLFI--NPS-------LEDIEKSKILKAQFIELHTG 154
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 27.5 bits (61), Expect = 6.6
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 77 INGLPVTTDSEILM-TSSEDGGSPIITNYI--YYEFEKNKENTGLQYDDNPNTFLLNGKE 133
I+G P + S L T +DGG+PI YI Y +K + + N + +L
Sbjct: 14 IHGQPSSGKSFKLSITKQDDGGAPI-LEYIVKYRSKDKEDQWLEKKVQGNKDHIILEH-- 70
Query: 134 FRILSGSIHYFRVR 147
+ + ++
Sbjct: 71 --LQWTMGYEVQIT 82
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max}
SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A*
1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A*
2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A
1btc_A*
Length = 495
Score = 28.9 bits (64), Expect = 6.9
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 147 RPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKD-VYEFGDNNKDIDFVKFIKIAQEEDL 205
P+ +++L +LRA G + V + W + E Y++ + +++ QE L
Sbjct: 31 DPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWR------AYRSLLQLVQECGL 84
Query: 206 FVIIRPGPYICAEWD 220
+ + C
Sbjct: 85 TLQAIMSFHQCGGNV 99
>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG
MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB:
1qno_A* 1qnq_A* 1qnp_A* 1qns_A*
Length = 344
Score = 28.6 bits (63), Expect = 6.9
Identities = 17/119 (14%), Positives = 42/119 (35%), Gaps = 21/119 (17%)
Query: 125 NTFLLNGKEFRILSGSIHYFRVRPEYWR--DRLRKLRAMGANTVETYIA----------- 171
F ++GK + ++ + + + G V +
Sbjct: 10 TQFNIDGKVGYFAGTNCYWCSFLTNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQ 69
Query: 172 --WNLHEPLKDVYEFGDNN-KDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSY 227
+ G + + +D+V ++ A++ +L +II P++ D+GG+ +Y
Sbjct: 70 IWFQKLSATGSTINTGADGLQTLDYV--VQSAEQHNLKLII---PFVNNWSDYGGINAY 123
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 28.5 bits (64), Expect = 6.9
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 83 TTDSEILMT---SSEDGGSPIITNYIYYEFEKNKENTGLQYDDNPNTFLLNGKEFRILSG 139
T + + ++ DGGS I+ + + K + + G ++ G
Sbjct: 114 VTRNSVSLSWEKPEHDGGSRILGYIVEMQ-TKGSDKWATCATVKVTEATITG----LIQG 168
Query: 140 SIHYFRVR 147
+ FRV
Sbjct: 169 EEYSFRVS 176
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid,
niaid, SBRI, cytoplasm, pyridoxine biosynthesis,
transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Length = 278
Score = 28.7 bits (65), Expect = 7.7
Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 15/55 (27%)
Query: 288 DKNYMRELVAMLRSNGIRSPLFTADDPSMGDSGSLIEDVLYAANI------LYAG 336
+ +R L G+R LF DP + A L+ G
Sbjct: 140 HFDAVRAACKQLADAGVRVSLFI--DPD-------EAQIRAAHETGAPVIELHTG 185
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 27.3 bits (61), Expect = 8.1
Identities = 17/80 (21%), Positives = 23/80 (28%), Gaps = 10/80 (12%)
Query: 72 PADVDINGLPVTTDSEILM-TSSEDGGSPIITNYI--YYEFEKNKENTGLQYDDNPNTFL 128
P V + L T DG SP + YI E D +
Sbjct: 21 PEHPVATLSTVERRAINLTWTKPFDGNSP-LIRYILEMSENNAPWTVLLASVDPKATSVT 79
Query: 129 LNGKEFRILSGSIHY-FRVR 147
+ G L + Y FR+
Sbjct: 80 VKG-----LVPARSYQFRLC 94
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 27.3 bits (61), Expect = 8.8
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 20/89 (22%)
Query: 73 ADVDINGLP----------VTTDSEILM-TSSEDGGSPIITNYIYYEFEKNKENTGLQYD 121
+ D++ LP VT +S L G P + YI E + Q
Sbjct: 8 KNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLP-ASAYI-IEAFSQSVSNSWQ-- 63
Query: 122 DNPNTFLLNGKEFRILS---GSIHYFRVR 147
+ + + +I+ F VR
Sbjct: 64 --TVANHVKTTLYTVRGLRPNTIYLFMVR 90
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel,
protein-substrate complex, multi-binding states; HET:
DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A
1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Length = 243
Score = 28.2 bits (64), Expect = 8.8
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 15/57 (26%)
Query: 286 VADKNYMRELVAMLRSNGIRSPLFTADDPSMGDSGSLIEDVLYAANI------LYAG 336
++ MR+ L GI+ LF D E + AA + ++ G
Sbjct: 110 AGQRDKMRDACKRLADAGIQVSLFI--DAD-------EEQIKAAAEVGAPFIEIHTG 157
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase;
cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A
{Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A*
3qhm_A* 3qhn_A*
Length = 458
Score = 28.7 bits (63), Expect = 9.2
Identities = 12/64 (18%), Positives = 26/64 (40%)
Query: 262 QFIDGQGPIIMLGVENELAVLGPNVADKNYMRELVAMLRSNGIRSPLFTADDPSMGDSGS 321
G +++G G + D + +LV + N + + +P GD+G
Sbjct: 329 YVKLELGYSVVIGEFGGKYGHGGDPRDVIWQNKLVDWMIENKFCDFFYWSWNPDSGDTGG 388
Query: 322 LIED 325
+++D
Sbjct: 389 ILQD 392
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.418
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,044,853
Number of extensions: 753744
Number of successful extensions: 1665
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1597
Number of HSP's successfully gapped: 66
Length of query: 758
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 657
Effective length of database: 3,881,772
Effective search space: 2550324204
Effective search space used: 2550324204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)