RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12280
(758 letters)
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal
domain {Penicillium sp. [TaxId: 5081]}
Length = 354
Score = 250 bits (639), Expect = 5e-77
Identities = 92/365 (25%), Positives = 144/365 (39%), Gaps = 50/365 (13%)
Query: 119 QYDDNPNTFLLNGKEFRILSGSIHYFRV-RPEYWRDRLRKLRAMGANTVETYIAWNLHEP 177
+D++ + +NG+ I SG +H +R+ + D K++A+G N V Y+ W L E
Sbjct: 7 TWDEH--SIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEG 64
Query: 178 LKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLR 237
Y D F A+E ++++ RPGPYI AE GG P +L R GI LR
Sbjct: 65 NPGHYSAEGIF---DLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGI-LR 120
Query: 238 SMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGP---NVADKNYMRE 294
+ D YL Y +N+ + Q +G GPII+ ENE + D +YM+
Sbjct: 121 TSDEAYLKATDNYASNIAATIAKAQITNG-GPIILYQPENEYSGACCGYNGFPDGSYMQY 179
Query: 295 LVAMLRSNGIRSPLFTADDPSMGDS--GSLIEDVLYAANILYAG---------------- 336
+ R GI P + D + G + G+ V + Y
Sbjct: 180 IEDHARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLP 239
Query: 337 -EELRKLSYMQPNKPLMVMEWWTGWFDTWAKNRHNTFPTNEYEMTLQSLLEY------PV 389
P+ P ++E+ G FD W + +
Sbjct: 240 TYFHTSHEQQSPSTPYSLVEFQGGAFDPW-GGVGFAKCAALLNHEFERVFYKNDFSFGVA 298
Query: 390 SLNLFMFHGGTSWGFYNGANIDKSLDKYTPDTTSYDYDAPLTEGGDYTAKYWITRK---Y 446
LNL+M GGT+WG + TSYDY + ++E + T + + K
Sbjct: 299 FLNLYMIFGGTNWGNLG----------HPGGYTSYDYGSAISESRNITREKYSELKLLGN 348
Query: 447 FLQVA 451
F +V+
Sbjct: 349 FAKVS 353
>d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus
thermophilus [TaxId: 274]}
Length = 393
Score = 62.8 bits (151), Expect = 5e-11
Identities = 41/294 (13%), Positives = 73/294 (24%), Gaps = 25/294 (8%)
Query: 148 PEYWRDRLRKLRAMGANTVETYI-AWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLF 206
E W++ R++R G + V AW L EP E+G + I E L
Sbjct: 13 KERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWG------WLDEAIATLAAEGLK 66
Query: 207 VIIRPGPYICAEWDFGGMPSYLLREPGIKLRSM---------DPKYLNRVRQYFNNLIPL 257
V++ +W P L + + R P Y R+ L
Sbjct: 67 VVLGTPTATPPKWLVDRYPEILPVDREGRRRRFGGRRHYCFSSPVYREEARRIVTLLAE- 125
Query: 258 LEPLQFIDGQGPIIMLGVENELAVLGPNVADKNYMRELVAMLRSNGIRS--PLFTADDPS 315
G + +NE +E + L A +
Sbjct: 126 -----RYGGLEAVAGFQTDNEYGCHDTVRCYCPRCQEAFRGWLEARYGTIEALNEAWGTA 180
Query: 316 MGDSGSLIEDVLYAANILYAGEELRKLSYMQPNKPLMVMEWWTGWFDTWAKNRHNTFPTN 375
+ ++ A L V + + + F T+
Sbjct: 181 FWSQRYRSFAEVELPHLTVAEPNPSHLLDYYRFASDQVRAFNRLQVEILRAHAPGKFVTH 240
Query: 376 EYEMTLQSLLEYPVSLNLFMFHGGTSWGFYNGANIDKSLDKYTPDTTSYDYDAP 429
M + L+ F S+ + ++ + D
Sbjct: 241 -NFMGFFTDLDAFALAQDLDFASWDSYPLGFTDLMPLPPEEKLRYARTGHPDVA 293
>d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon
esculentum) [TaxId: 4081]}
Length = 370
Score = 54.3 bits (129), Expect = 3e-08
Identities = 35/332 (10%), Positives = 76/332 (22%), Gaps = 24/332 (7%)
Query: 125 NTFLLNGKEFRILSGSIHYF------RVRPEYWRDRLRKLRAMGANTVETYIAWNLH-EP 177
F LNGK I + ++ + ++ N T+ + P
Sbjct: 9 THFALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTWAFSHGGSRP 68
Query: 178 LKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLR 237
L+ + I A++ + +I+ A + ++
Sbjct: 69 LQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLVNNWDAFGGKKQYVEWAVQRGQKLTS 128
Query: 238 SMDPK--------YLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNVADK 289
D Y N V+ + + + D L E +
Sbjct: 129 DDDFFTNPMVKGFYKNNVKVVLTRVNTITKVAYKDDPTILSWELINEPRCPSDLSGKTFQ 188
Query: 290 NYMRELVAMLRSNGIRSPLFTADDPSMGDSGSLIEDVLYAANILYAGEELRKLSYMQPNK 349
N++ E+ L+S L + G+ Y +
Sbjct: 189 NWVLEMAGYLKSIDSNHLLEIGLEGFYGNDMRQYNPNSYIFGTNF---------ISNNQV 239
Query: 350 PLMVMEWWTGWFDTWAKNRHNTFPTNEYEMTLQSLLEYPVSLNLFMFHGGTSWGFYNGAN 409
+ + + W +Q ++ L +
Sbjct: 240 QGIDFTTIHMYPNQWLPGLTQEAQDKWASQWIQVHIDDSKMLKKPLLIAEFGKSTKTPGY 299
Query: 410 IDKSLDKYTPDTTSYDYDAPLTEGGDYTAKYW 441
D Y ++ + G +W
Sbjct: 300 TVAKRDNYFEKIYGTIFNCAKSGGPCGGGLFW 331
>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 339
Score = 45.3 bits (106), Expect = 2e-05
Identities = 39/321 (12%), Positives = 84/321 (26%), Gaps = 51/321 (15%)
Query: 122 DNPNTFLLNGKEFRILSGSIH---YFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPL 178
+ +NGK I G + R D+L+ + +G NTV
Sbjct: 9 SGGRQYSVNGKPLLIRGGGYTPDLFLRWNETAAADKLKYVLNLGLNTVRLE-----GHIE 63
Query: 179 KDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIKLRS 238
D +F IA + + + PG C +W+ K
Sbjct: 64 PD--------------EFFDIADDLGVLTM--PGWECCDKWEGQVNGEE-------KGEP 100
Query: 239 MDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNVADKNYMRELVAM 298
+ + + + +I + ++ D+ + +
Sbjct: 101 WVESDYPIAKASMFSEA------ERLRDHPSVISFHIGSD------FAPDRRIEQGYLDA 148
Query: 299 LRSNGIRSPLFTADDPSMGD-SGSLIEDVLYAANILYAGEELRKLSYMQPNKPLMVMEWW 357
+++ P+ A +G+ + + + K + E
Sbjct: 149 MKAADFLLPVIPAASARPSPITGASGMKMNGPYDYVPPVYWYDKSQKDRGGAWSFNSET- 207
Query: 358 TGWFDTWAKNRHNTFPTNEYEMTLQSLLEYPVSLNLFMFHGGTSWGFYNGANIDKSLDKY 417
T T + M+ L + + +H +S F N +L K
Sbjct: 208 -SAGVDIP-----TMDTLKRMMSASELDTMWKNPSAKQYHRSSSDTFGNLKLFGDALTKR 261
Query: 418 TPDTTSYDYDAPLTEGGDYTA 438
+ + + + Y
Sbjct: 262 YGASANLNDFVRKAQLSQYEN 282
>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida
albicans) [TaxId: 5476]}
Length = 394
Score = 43.7 bits (102), Expect = 6e-05
Identities = 23/164 (14%), Positives = 55/164 (33%), Gaps = 12/164 (7%)
Query: 150 YWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVII 209
+++ +G N V I + + L + + ++ K + A++ ++ V I
Sbjct: 69 ITEQDFKQISNLGLNFVRIPIGYWAFQLLDNDPYVQGQVQYLE--KALGWARKNNIRVWI 126
Query: 210 RPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGP 269
++ F S + + + + N L + + +
Sbjct: 127 DLHGAPGSQNGFDNSGLR---------DSYNFQNGDNTQVTLNVLNTIFKKYGGNEYSDV 177
Query: 270 IIMLGVENELAVLGPNVAD-KNYMRELVAMLRSNGIRSPLFTAD 312
+I + + NE N+ K + + LR G +P+ D
Sbjct: 178 VIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHD 221
>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum
[TaxId: 1515]}
Length = 340
Score = 43.0 bits (100), Expect = 8e-05
Identities = 33/314 (10%), Positives = 88/314 (28%), Gaps = 37/314 (11%)
Query: 150 YWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVII 209
+ + G + V + + E +V E+ ++ + ++ ++ +L +++
Sbjct: 29 ITEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSY-IDRCLEWCKKYNLGLVL 87
Query: 210 RPGPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGP 269
+ + DP R + L + +
Sbjct: 88 DMHHAPGYRFQDFKTSTL----------FEDPNQQKRFVDIWRFL------AKRYINERE 131
Query: 270 IIMLGVENELAVLGPNVAD-KNYMRELVAMLRSNGIRSPLFTADDPSMGDSGSLIEDVLY 328
I + N++ + P+ M E + +R L+ + +
Sbjct: 132 HIAFELLNQV--VEPDSTRWNKLMLECIKAIREIDSTMWLYIGGNNYNSPDELKNLADID 189
Query: 329 AANILYAGEELRKLSYMQPNKPLMVMEWWTGWFDTWAKNRHNTFPTNEYEMTLQSLLEYP 388
I+Y + P ++T W+++ T +Y + + E+
Sbjct: 190 DDYIVYN------FHFYNP-------FFFTHQKAHWSESAMAYNRTVKYPGQYEGIEEFV 236
Query: 389 VSLNLFMFHGGTSWGFYNGANIDKSLDKYTPDTTSYDYDAPLTEGGDYTAKYWITR---- 444
+ + F + N + K L E G +R
Sbjct: 237 KNNPKYSFMMELNNLKLNKELLRKDLKPAIEFREKKKCKLYCGEFGVIAIADLESRIKWH 296
Query: 445 KYFLQVAQNLNISH 458
+ ++ + + +I
Sbjct: 297 EDYISLLEEYDIGG 310
>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId:
51453]}
Length = 344
Score = 39.6 bits (91), Expect = 0.001
Identities = 29/264 (10%), Positives = 65/264 (24%), Gaps = 24/264 (9%)
Query: 125 NTFLLNGKEFRILSGSIHYFRVRPEY--WRDRLRKLRAMGANTVETYIA--------WNL 174
F ++GK + ++ + + + G V +
Sbjct: 10 TQFNIDGKVGYFAGTNCYWCSFLTNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQ 69
Query: 175 HEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGI 234
K N D ++ + + ++ W G + + G
Sbjct: 70 IWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPFVNNWSDYGGINAYVNAFGG 129
Query: 235 KLRSM--DPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPN-VADKNY 291
+ + + R+Y ++ I + NE G + +
Sbjct: 130 NATTWYTNTAAQTQYRKYVQAVVSRYA------NSTAIFAWELGNEPRCNGCSTDVIVQW 183
Query: 292 MRELVAMLRSNGIRSPLFTADDPSMGDSGSLIEDVLYAANILYAGEELRKLS-----YMQ 346
+ ++S + D+ +G Y +A K ++
Sbjct: 184 ATSVSQYVKSLDSNHLVTLGDEGLGLSTGDGAYPYTYGEGTDFAKNVQIKSLDFGTFHLY 243
Query: 347 PNKPLMVMEWWTGWFDTWAKNRHN 370
P+ W GW T A
Sbjct: 244 PDSWGTNYTWGNGWIQTHAAACLA 267
>d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel
(Mytilus edulis) [TaxId: 6550]}
Length = 350
Score = 38.5 bits (88), Expect = 0.002
Identities = 24/323 (7%), Positives = 75/323 (23%), Gaps = 40/323 (12%)
Query: 125 NTFLLNGKEFRILSGSIHYF-----------RVRPEYWRDRLRKLRAMGANTVETYIAWN 173
NG + + + + L +++ G N+V ++
Sbjct: 7 TNLNYNGHHIFLSGANQAWVNYARDFGHNQYSKGKSTFESTLSDMQSHGGNSVRVWLHIE 66
Query: 174 LHEPLKDVYEFGDNNKDIDFV----KFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLL 229
+ D + ++ AQ ++ + + + ++
Sbjct: 67 GESTPEFDNNGYVTGIDNTLISDMRAYLHAAQRHNILIFFTLWNGAVKQSTHYRLNGLMV 126
Query: 230 REPGIK------LRSMDPKYLNR-------VRQYFNNLIPLLEPLQFIDGQGPIIMLGVE 276
++ L+ M N + I E +
Sbjct: 127 DTRKLQSYIDHALKPMANALKNEKALGGWDIMNEPEGEIKPGESSSEPCFDTRHLSGSGA 186
Query: 277 NELAVLGPNVADKNYMRELVAMLRSNGIRSPLFTADDPSMGDSGSLIEDVLYAANILYAG 336
L ++ A ++ + + D+ ++ LY+ + L
Sbjct: 187 GWAGHLYSAQEIGRFVNWQAAAIKEVDPGAMVTVGSWNMKADTDAMGFHNLYSDHCLVKA 246
Query: 337 EELRKLSYMQPNKPLMVMEWWTGWFDTWAKNRHNTFPTN-------EYEMTLQSLLEYPV 389
+ + + +W + + + E+ + +
Sbjct: 247 GGKQSGTLSFY--QVHTYDWQNHFGNESPFKHSFSNFRLKKPMVIGEFNQEHGAGMSSES 304
Query: 390 SLNLFM---FHGGTSWGFYNGAN 409
+ G +W + +
Sbjct: 305 MFEWAYTKGYSGAWTWSRTDVSW 327
>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 348
Score = 38.1 bits (87), Expect = 0.003
Identities = 9/62 (14%), Positives = 16/62 (25%), Gaps = 5/62 (8%)
Query: 121 DDNPNTFLLNGKEFRILSGSIHYF-----RVRPEYWRDRLRKLRAMGANTVETYIAWNLH 175
D F +NG + V E ++ R ++ N V +
Sbjct: 12 DGESFYFEVNGIPMFAKGANYIPQDALLPNVTTERYQTLFRDMKEANMNMVRIWGGGTYE 71
Query: 176 EP 177
Sbjct: 72 NN 73
>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId:
39650]}
Length = 410
Score = 37.8 bits (86), Expect = 0.004
Identities = 20/146 (13%), Positives = 39/146 (26%), Gaps = 18/146 (12%)
Query: 125 NTFLLNGKEFRILSGSIHYFRVRPEYWR--------DRLRKLRAMGANTVETYIAWNLHE 176
F L GK + I ++ Y L L+A+G N + E
Sbjct: 9 GHFELQGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLKAIGVNNLRVLAVSEKSE 68
Query: 177 -------PLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLL 229
+ + + D + + D+ V++ GGM Y+
Sbjct: 69 INSAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVLYF---NNFWQWSGGMTQYMA 125
Query: 230 REPGIKLRSMDPKYLNRVRQYFNNLI 255
G ++ + +
Sbjct: 126 WIEGEPVQDPNVTNEWEAFMAKSASF 151
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 35.7 bits (81), Expect = 0.015
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 125 NTFLLNGKEFRILSGSIHYF------RVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPL 178
+ FL+NGK F + H LR +GAN T E +
Sbjct: 6 SQFLINGKPFYFHGVNKHEDADIRGKGFDWPLLVKDFNLLRWLGANAFRTSHYPYAEEVM 65
Query: 179 KDVYEFGDNNKD 190
+ +G D
Sbjct: 66 QMCDRYGIVVID 77
>d1yq2a5 c.1.8.3 (A:313-609) beta-Galactosidase, domain 3
{Arthrobacter sp. c2-2 [TaxId: 192168]}
Length = 297
Score = 34.9 bits (79), Expect = 0.029
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 10/70 (14%)
Query: 125 NTFLLNGKEFRILSGSIHYF------RVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPL 178
+ FL+NG+ + H R+ L ++ N + T + P
Sbjct: 6 DQFLVNGRRVVFHGVNRHETHPDRGRVFDEAGAREDLALMKRFNVNAIRTSH----YPPH 61
Query: 179 KDVYEFGDNN 188
+ + D
Sbjct: 62 PRLLDLADEM 71
>d1jz8a5 c.1.8.3 (A:334-625) beta-Galactosidase, domain 3
{Escherichia coli [TaxId: 562]}
Length = 292
Score = 33.8 bits (76), Expect = 0.072
Identities = 11/68 (16%), Positives = 18/68 (26%), Gaps = 6/68 (8%)
Query: 125 NTFLLNGKEFRILSGSIHYFR------VRPEYWRDRLRKLRAMGANTVETYIAWNLHEPL 178
LLNGK I + H + + + ++ N V N
Sbjct: 7 GLLLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWY 66
Query: 179 KDVYEFGD 186
+G
Sbjct: 67 TLCDRYGL 74
>d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 408
Score = 33.7 bits (76), Expect = 0.083
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 3/77 (3%)
Query: 150 YWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVII 209
Y + + G N V I + + L D + + I A+ L V +
Sbjct: 74 YQEQDFANIASQGFNLVRIPIGYWAFQILDDDPYVSGLQESY-LDQAIGWARNNSLKVWV 132
Query: 210 --RPGPYICAEWDFGGM 224
+D G+
Sbjct: 133 DLHGAAGSQNGFDNSGL 149
>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus
[TaxId: 1396]}
Length = 417
Score = 32.9 bits (75), Expect = 0.12
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 146 VRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKD-VYEFG 185
E + + LR + G + W E D ++F
Sbjct: 26 TNWETFENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFS 66
>d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602
[TaxId: 244966]}
Length = 297
Score = 31.8 bits (71), Expect = 0.27
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 10/92 (10%)
Query: 130 NGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNK 189
NG F ++ G H + + + GANTV ++ +
Sbjct: 14 NGNPF-VMRGINHGHAWYKDQATTAIEGIANTGANTVRIVLSDGGQW---------TKDD 63
Query: 190 DIDFVKFIKIAQEEDLFVIIRPGPYICAEWDF 221
I +A++ +L ++ +
Sbjct: 64 IQTVRNLISLAEDNNLVAVLEVHDATGYDSIA 95
>d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum
[TaxId: 1521]}
Length = 380
Score = 31.0 bits (69), Expect = 0.53
Identities = 35/264 (13%), Positives = 81/264 (30%), Gaps = 6/264 (2%)
Query: 152 RDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRP 211
+ + ++ G NTV ++W+ H D + V + + ++VI+
Sbjct: 64 KQMIDAIKQKGFNTVRIPVSWHPHVSGSDYKISDVWMNRVQEV--VNYCIDNKMYVILNT 121
Query: 212 GPYICAEWDFGGMPSYLLREPGIKLRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPII 271
+ S + + S+ + R Y +LI + G
Sbjct: 122 HHD-VDKVKGYFPSSQYMASSKKYITSVWAQIAARFANYDEHLIFEGMNEPRLVGHANEW 180
Query: 272 MLGVENELAVLGPNVADKNYMRELVAMLRSNGIRSPLFTADDPSMGDSGSLIEDVLYAAN 331
+ N V N ++ V +R+ G ++ P S + +
Sbjct: 181 WPELTNSDVVDSINC-INQLNQDFVNTVRATGGKNASRYLMCPGYVASPDGATNDYFRMP 239
Query: 332 ILYAGEELRKLSYMQPNKPLMVMEWWTGWFDTWAKNRHNTFPTNEYEMTLQSLLEYPVSL 391
+G + + + P T A N +++ +E + ++ S
Sbjct: 240 NDISGNNNKIIVSVHAYCPWNFAGLAMADGGTNAWNINDSKDQSEVTWFMDNIYNKYTSR 299
Query: 392 NLFMFHGGTSWGFYNGANIDKSLD 415
+ + G G + N+ ++
Sbjct: 300 GIPVIIGE--CGAVDKNNLKTRVE 321
>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 28.3 bits (62), Expect = 1.3
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 4/77 (5%)
Query: 72 PADVDINGLPVTTDSEILM-TSSEDGGSPIITNYIYYEFEKNKENTGLQYDDNPNTFLLN 130
P V + L T DG SP+I + L D T +
Sbjct: 14 PEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASVDPKATSV-- 71
Query: 131 GKEFRILSGSIHYFRVR 147
++ + FR+
Sbjct: 72 -TVKGLVPARSYQFRLC 87
>d2a1ia1 c.52.1.20 (A:99-227) DNA excision repair protein ERCC-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 129
Score = 28.5 bits (64), Expect = 1.4
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 89 LMTSSEDGGSPIITNYIYYEFEKNKENTGLQYDDNPNTFLLNGKEFRILSGSIHYFRVRP 148
++ S G+P++ K N ++ D ++L G+ L S+ Y + P
Sbjct: 3 IIVSPRQRGNPVL---------KFVRNVPWEFGDVIPDYVL-GQSTCALFLSLRYHNLHP 52
Query: 149 EYWRDRLRKLRAMGANTV 166
+Y RL+ L A V
Sbjct: 53 DYIHGRLQSLGKNFALRV 70
>d2nlra_ b.29.1.11 (A:) Family 12 endo-1,4-beta-glucanase
(cellulase) catalytic domain {Streptomyces lividans,
CelB2 [TaxId: 1916]}
Length = 222
Score = 29.0 bits (65), Expect = 1.7
Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 13/101 (12%)
Query: 361 FDTWAKNRHNTFPTNEYEM--------TLQSLLEYPVSLNLFMFHGGTSWGFYNGANIDK 412
+D W T N+ E+ +Q + + ++ GG +W ++G N
Sbjct: 103 YDIWLDPTARTDGVNQTEIMIWFNRVGPIQPIGSPVGTASV----GGRTWEVWSGGNGSN 158
Query: 413 SLDKYTPDTTSYDYDAPLTEGGDY-TAKYWITRKYFLQVAQ 452
+ + + + + + A+ ++L Q
Sbjct: 159 DVLSFVAPSAISGWSFDVMDFVRATVARGLAENDWYLTSVQ 199
>d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus
[TaxId: 5087]}
Length = 305
Score = 29.0 bits (64), Expect = 1.9
Identities = 7/72 (9%), Positives = 19/72 (26%), Gaps = 3/72 (4%)
Query: 155 LRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPY 214
+ L + G N P N + + ++ + ++ P+
Sbjct: 37 IDTLISKGMNIFRVPFMMERLVPNSMTGSPDPNYLAD-LIATVNAITQKGAYAVV--DPH 93
Query: 215 ICAEWDFGGMPS 226
+ + S
Sbjct: 94 NYGRYYNSIISS 105
>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga
maritima [TaxId: 2336]}
Length = 325
Score = 28.9 bits (63), Expect = 2.2
Identities = 5/78 (6%), Positives = 20/78 (25%), Gaps = 1/78 (1%)
Query: 150 YWRDRLRKLRAMGANTVETYIAWNLHEPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVII 209
+ + + N V + L + + ++ + + I ++ + + I
Sbjct: 21 FKEEDFLWMAQWDFNFVRIPMCHLLWSDRGNPFIIREDFFEK-IDRVIFWGEKYGIHICI 79
Query: 210 RPGPYICAEWDFGGMPSY 227
+
Sbjct: 80 SLHRAPGYSVNKEVEEKT 97
>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId:
2021]}
Length = 302
Score = 28.7 bits (63), Expect = 2.4
Identities = 33/257 (12%), Positives = 72/257 (28%), Gaps = 44/257 (17%)
Query: 116 TGLQYDDNPNTFLLNGKEFRILSGSIHYFRVRPEYWRDRLRKLRAMGANTVETYIAWNLH 175
TGL + + NG+EF I+ G + + +++ GANTV ++
Sbjct: 2 TGLHVKNG-RLYEANGQEF-IIRG-VSHPHNWYPQHTQAFADIKSHGANTVRVVLSNG-- 56
Query: 176 EPLKDVYEFGDNNKDIDFVKFIKIAQEEDLFVIIRPGPYICAEWDFGGMPSYLLREPGIK 235
N D I + ++ L ++
Sbjct: 57 -------VRWSKNGPSDVANVISLCKQNRLICMLEVHDTTGYGEQ--------------- 94
Query: 236 LRSMDPKYLNRVRQYFNNLIPLLEPLQFIDGQGPIIMLGVENELAVLGPNVAD--KNYMR 293
L++ Y+ L +L+ G+ +++ + NE
Sbjct: 95 ---SGASTLDQAVDYWIELKSVLQ------GEEDYVLINIGNEPYGNDSATVAAWATDTS 145
Query: 294 ELVAMLRSNGIRSPLFTADDPSMGDSGSLIEDVLYAANILYAGEELRKLSYMQPNKPLMV 353
+ LR+ G L + + A+ +YA + +
Sbjct: 146 AAIQRLRAAGFEHTLVV---DAPNWGQDWTNTMRNNADQVYASDPTGNTVFSIHMYG--- 199
Query: 354 MEWWTGWFDTWAKNRHN 370
+ ++ ++ N
Sbjct: 200 VYSQASTITSYLEHFVN 216
>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex
aeolicus [TaxId: 63363]}
Length = 194
Score = 28.3 bits (62), Expect = 2.6
Identities = 9/122 (7%), Positives = 26/122 (21%), Gaps = 5/122 (4%)
Query: 344 YMQPNKPLMVMEWWTGWFDTWAKNRHNTFPTNEYEMTLQSLLEYPVSLNLFMFHGGTSWG 403
+ P + + + +++ F
Sbjct: 70 LILPKVEGNEISLYRVHSPACLGVGAFGIMEPVEGERVNPEDVDFIAVPGVAFDLEGYRL 129
Query: 404 FYNGANIDKSLDKYTPDTTSYDYDAPL-----TEGGDYTAKYWITRKYFLQVAQNLNISH 458
+ D+ L + Y + + D +T K ++ ++ H
Sbjct: 130 GFGKGYYDRLLKRVKGLKVGVAYSFQVFERLPRDAWDIPVDVLVTEKNVRRLRDGRSLEH 189
Query: 459 PT 460
Sbjct: 190 HH 191
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A
(TM0820) {Thermotoga maritima [TaxId: 2336]}
Length = 398
Score = 28.5 bits (62), Expect = 3.1
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 289 KNYMRELVAMLRSNGIRSPLFTADDPSMGDSGSL--IEDVLYAANILYAGEELRKLSYMQ 346
+ + ++ +++ GIR LF S+ +G + D L I + ++S ++
Sbjct: 19 RGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWV-----EVSGVK 73
Query: 347 PNKPL-MVMEWWTGWF 361
PN L V E
Sbjct: 74 PNPVLSKVHEAVEVAK 89
>d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus
faecalis (Streptococcus faecalis) [TaxId: 1351]}
Length = 353
Score = 28.4 bits (63), Expect = 3.2
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 15/74 (20%)
Query: 166 VETYIAWNLHEPLKDVYEFGDNNK----------DIDFVKFIKIAQEEDLFVIIRP--GP 213
+ ++V G++ +D + ++ + +IRP G
Sbjct: 261 IREIGHRINFVHFRNVKYLGEHRFEETAHPSVAGSLDMAELMQALVDVGYEGVIRPDHGR 320
Query: 214 YICAEWDFGGMPSY 227
I WD MP Y
Sbjct: 321 AI---WDEKAMPGY 331
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 28.1 bits (62), Expect = 5.0
Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 12/109 (11%)
Query: 541 VADIAI--VMVNQERQTVPLSDVQDLNEFGFWKTENAELLLN--ITRPANNIDILVENTG 596
++D A ++ ++E Q++ ++ E G KT N + ++ T A+ E +G
Sbjct: 109 ISDNAYQFMLTDRENQSILIT-----GESGAGKTVNTKRVIQYFATIAASGEKKKEEQSG 163
Query: 597 RVNYWLNDDFKYSNIKKGLGTSFDNVVTVNNARPQKIWLIYALEFEQDW 645
++ L D +N +F N TV N + + F
Sbjct: 164 KMQGTLEDQIISANPLLE---AFGNAKTVRNDNSSRFGKFIRIHFGATG 209
>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 27.7 bits (61), Expect = 5.0
Identities = 7/61 (11%), Positives = 19/61 (31%)
Query: 16 QNERDKVTRNKKPYIGLACLLLGLLTISMMILKISSDTKICENKLDLKISESNVNNPADV 75
+ E + +G+ L L I++ + ++ES + ++
Sbjct: 164 ERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEEL 223
Query: 76 D 76
Sbjct: 224 K 224
>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl
transferase (GDP)/mannose-6-phosphate isomerase TTHA1750
{Thermus thermophilus [TaxId: 274]}
Length = 268
Score = 27.3 bits (59), Expect = 6.1
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 702 GRYSRLSPYQTLYLPAPLLHLGQNKISVFEH-YRRAARLSFTDKPIVRNFQHRF 754
GR RL P P P L L + K ++ E R A L ++ ++ + +
Sbjct: 11 GRGERLWPLSREDRPKPFLPLFEGK-TLLEATLERLAPLVPPERTLLAVRRDQE 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.418
Gapped
Lambda K H
0.267 0.0451 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,986,692
Number of extensions: 148912
Number of successful extensions: 385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 34
Length of query: 758
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 666
Effective length of database: 1,144,436
Effective search space: 762194376
Effective search space used: 762194376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.4 bits)