BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12281
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LD8|A Chain A, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|A Chain A, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 334
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 110/257 (42%), Gaps = 40/257 (15%)
Query: 109 KPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKE 168
KP +L + W++ W E L Y + + N Y M +K
Sbjct: 68 KPVVLLNAQEGWSAQEKWT------LERLKRKYRNQKFKCGEDNDGY-----SVKMKMKY 116
Query: 169 YTIYWQNKIDGKLSETEPLYYLKD---WHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLE 225
Y Y ++ D PLY H R ED Y+VP F+ D L +Y E +
Sbjct: 117 YIEYMESTRD-----DSPLYIFDSSYGEHPKRRKLLED-YKVPKFFTDD-LFQYAGE--K 167
Query: 226 HKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNE----KYFKDSMGN 281
+ YR+ MGP + T +H D + +W+ + G K+W L K +D GN
Sbjct: 168 RRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGN 227
Query: 282 LISDMRSVDWSTL--PRDTV---------IIVEQEAGDSIFVPSGWHHQVTNLEHTISIN 330
+ ++ W + PR + + + Q+ G+++FVP GW H V NL+ TI+I
Sbjct: 228 QQDE--AITWFNVIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAIT 285
Query: 331 HNWINGTNIDHVYHEMV 347
N+ + TN V+H+ V
Sbjct: 286 QNFASSTNFPVVWHKTV 302
>pdb|3K2O|A Chain A, Structure Of An Oxygenase
pdb|3K2O|B Chain B, Structure Of An Oxygenase
Length = 336
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 107/257 (41%), Gaps = 40/257 (15%)
Query: 109 KPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKE 168
KP +L + W++ W E L Y + + N Y K
Sbjct: 69 KPVVLLNAQEGWSAQEKWT------LERLKRKYRNQKFKCGEDNDGY-----SVKXKXKY 117
Query: 169 YTIYWQNKIDGKLSETEPLYYLKD---WHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLE 225
Y Y ++ D PLY H R ED Y+VP F+ D L +Y E +
Sbjct: 118 YIEYXESTRD-----DSPLYIFDSSYGEHPKRRKLLED-YKVPKFFTDD-LFQYAGE--K 168
Query: 226 HKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNE----KYFKDSMGN 281
+ YR+ GP + T +H D + +W+ + G K+W L K +D GN
Sbjct: 169 RRPPYRWFVXGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGN 228
Query: 282 LISDMRSVDWSTL--PRDTV---------IIVEQEAGDSIFVPSGWHHQVTNLEHTISIN 330
+ ++ W + PR + + + Q+ G+++FVP GW H V NL+ TI+I
Sbjct: 229 QQDE--AITWFNVIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAIT 286
Query: 331 HNWINGTNIDHVYHEMV 347
N+ + TN V+H+ V
Sbjct: 287 QNFASSTNFPVVWHKTV 303
>pdb|1WGE|A Chain A, Solution Structure Of The Mouse Desr1
Length = 83
Score = 62.8 bits (151), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/32 (81%), Positives = 28/32 (87%)
Query: 25 PCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
PCPCGD F ITKE L+ GEDVATCP+CSLIIK
Sbjct: 32 PCPCGDNFAITKEDLENGEDVATCPSCSLIIK 63
>pdb|2JR7|A Chain A, Solution Structure Of Human Desr1
Length = 89
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/32 (81%), Positives = 28/32 (87%)
Query: 25 PCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
PCPCGD F ITKE L+ GEDVATCP+CSLIIK
Sbjct: 25 PCPCGDNFSITKEDLENGEDVATCPSCSLIIK 56
>pdb|1YOP|A Chain A, The Solution Structure Of Kti11p
Length = 83
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 25 PCPCGDRFQITKEQLKAGEDVATCPTCSLII 55
PCPCGDRFQI + + GE VA CP+CSL+I
Sbjct: 25 PCPCGDRFQIYLDDMFEGEKVAVCPSCSLMI 55
>pdb|1YWS|A Chain A, Solution Structure Of Ybl071w-A From Saccharomyces
Cerevisiae
Length = 82
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 25 PCPCGDRFQITKEQLKAGEDVATCPTCSLII 55
PCPCGDRFQI + + GE VA CP+CSL+I
Sbjct: 24 PCPCGDRFQIYLDDMFEGEKVAVCPSCSLMI 54
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 13/182 (7%)
Query: 162 TNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSS-DWLNEYY 220
+ MTL Y Y+ N K+ L + D K ++ VP++ W+ Y+
Sbjct: 203 SKMTLHNYVKYFMNPNRPKVLNVISLEF-------SDTKMSELVEVPDIAKKLSWVENYW 255
Query: 221 SEHLEHKDDY--RFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFK-D 277
+ + ++ MG ++++T H D + W + G K + L+ P +E + +
Sbjct: 256 PDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYE 315
Query: 278 SMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGT 337
S + ++ + + +V+Q G ++FVP+GW H V + ++ N+++
Sbjct: 316 SWSSSVTQSEVFFGDKVDKCYKCVVKQ--GHTLFVPTGWIHAVLTSQDCMAFGGNFLHNL 373
Query: 338 NI 339
NI
Sbjct: 374 NI 375
>pdb|3KV9|A Chain A, Structure Of Kiaa1718 Jumonji Domain
pdb|3KVA|A Chain A, Structure Of Kiaa1718 Jumonji Domain In Complex With
Alpha- Ketoglutarate
pdb|3KVB|A Chain A, Structure Of Kiaa1718 Jumonji Domain In Complex With N-
Oxalylglycine
pdb|3U78|A Chain A, E67-2 Selectively Inhibits Kiaa1718, A Human Histone H3
Lysine 9 Jumonji Demethylase
Length = 397
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 80/182 (43%), Gaps = 13/182 (7%)
Query: 162 TNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSS-DWLNEYY 220
+ MTL Y Y+ N K+ L + D K ++ VP++ W+ Y+
Sbjct: 112 SKMTLHNYVKYFMNPNRPKVLNVISLEF-------SDTKMSELVEVPDIAKKLSWVENYW 164
Query: 221 SEHLEHKDDY--RFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFK-D 277
+ + ++ MG ++++T H D + W + G K + L+ P +E + +
Sbjct: 165 PDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYE 224
Query: 278 SMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGT 337
S + ++ + + +V+Q G ++FVP+GW H V + ++ N+++
Sbjct: 225 SWSSSVTQSEVFFGDKVDKCYKCVVKQ--GHTLFVPTGWIHAVLTSQDCMAFGGNFLHNL 282
Query: 338 NI 339
NI
Sbjct: 283 NI 284
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
pdb|4AAP|B Chain B, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
Length = 239
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 91/241 (37%), Gaps = 31/241 (12%)
Query: 102 NNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEK 161
FL +P ILK + W W + EY+ G VPV + Y +
Sbjct: 20 EQFLVPGRPVILKGVADHWPCMQKW------SLEYIQEIAGCRTVPVEVGSRYTDEEWSQ 73
Query: 162 TNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYS 221
T MT+ E+ K EP +D + + D ++P + + +Y S
Sbjct: 74 TLMTVNEFI--------SKYIVNEP----RDVGYLAQHQLFD--QIPELKQDISIPDYCS 119
Query: 222 EHLEHKDDYRF-VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMG 280
+++ + GP+ T +PLH D ++ V + GRK L +P
Sbjct: 120 LGDGEEEEITINAWFGPQGTISPLHQDPQQNF--LVQVMGRKYIRLYSPQESGALYPHDT 177
Query: 281 NLISDMRSVD--------WSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHN 332
+L+ + VD + + + G+ +F+P + H V L+ + S++
Sbjct: 178 HLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSFW 237
Query: 333 W 333
W
Sbjct: 238 W 238
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
pdb|3UYJ|B Chain B, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
Length = 248
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 91/241 (37%), Gaps = 31/241 (12%)
Query: 102 NNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEK 161
FL +P ILK + W W + EY+ G VPV + Y +
Sbjct: 29 EQFLVPGRPVILKGVADHWPCMQKW------SLEYIQEIAGCRTVPVEVGSRYTDEEWSQ 82
Query: 162 TNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYS 221
T MT+ E+ K EP +D + + D ++P + + +Y S
Sbjct: 83 TLMTVNEFI--------SKYIVNEP----RDVGYLAQHQLFD--QIPELKQDISIPDYCS 128
Query: 222 EHLEHKDDYRF-VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMG 280
+++ + GP+ T +PLH D ++ V + GRK L +P
Sbjct: 129 LGDGEEEEITINAWFGPQGTISPLHQDPQQNF--LVQVMGRKYIRLYSPQESGALYPHDT 186
Query: 281 NLISDMRSVD--------WSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHN 332
+L+ + VD + + + G+ +F+P + H V L+ + S++
Sbjct: 187 HLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSFW 246
Query: 333 W 333
W
Sbjct: 247 W 247
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate
Length = 235
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 91/241 (37%), Gaps = 31/241 (12%)
Query: 102 NNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEK 161
FL +P ILK + W W + EY+ G VPV + Y +
Sbjct: 16 EQFLVPGRPVILKGVADHWPCMQKW------SLEYIQEIAGCRTVPVEVGSRYTDEEWSQ 69
Query: 162 TNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYS 221
T MT+ E+ K EP +D + + D ++P + + +Y S
Sbjct: 70 TLMTVNEFI--------SKYIVNEP----RDVGYLAQHQLFD--QIPELKQDISIPDYCS 115
Query: 222 EHLEHKDDYRF-VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMG 280
+++ + GP+ T +PLH D ++ V + GRK L +P
Sbjct: 116 LGDGEEEEITINAWFGPQGTISPLHQDPQQNF--LVQVMGRKYIRLYSPQESGALYPHDT 173
Query: 281 NLISDMRSVD--------WSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHN 332
+L+ + VD + + + G+ +F+P + H V L+ + S++
Sbjct: 174 HLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSFW 233
Query: 333 W 333
W
Sbjct: 234 W 234
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 10/156 (6%)
Query: 208 PNVFSSDWLN-----EYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRK 262
P+V ++++ EY E K + +F G ++T H D S + + G K
Sbjct: 271 PDVSGAEYIKLLQREEYLPEDQRPKVE-QFCLAGMAGSYTDFHVDFGGSSVYYHILKGEK 329
Query: 263 QWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTN 322
+ + AP E+ F + S + + + V V + G ++ +P+GW H V
Sbjct: 330 IFYIAAP-TEQNFAAYQAHETSPDTTTWFGDIANGAVKRVVIKEGQTLLIPAGWIHAVLT 388
Query: 323 LEHTISINHNWINGTNIDHVYHEMVSHLE-AVKKEI 357
++ N+++ N++ V HLE A++KEI
Sbjct: 389 PVDSLVFGGNFLHLGNLE--MQMRVYHLENAIRKEI 422
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine
Length = 235
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 31/241 (12%)
Query: 102 NNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEK 161
FL +P ILK + W W + EY+ G VPV + Y +
Sbjct: 16 EQFLVPGRPVILKGVADHWPCXQKW------SLEYIQEIAGCRTVPVEVGSRYTDEEWSQ 69
Query: 162 TNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYS 221
T T+ E+ K EP +D + + D ++P + + +Y S
Sbjct: 70 TLXTVNEFI--------SKYIVNEP----RDVGYLAQHQLFD--QIPELKQDISIPDYCS 115
Query: 222 EHLEHKDDYRF-VYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMG 280
+++ + GP+ T +PLH D ++ V + GRK L +P
Sbjct: 116 LGDGEEEEITINAWFGPQGTISPLHQDPQQNFL--VQVXGRKYIRLYSPQESGALYPHDT 173
Query: 281 NLISDMRSVD--------WSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHN 332
+L+ + VD + + + G+ +F+P + H V L+ + S++
Sbjct: 174 HLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSFW 233
Query: 333 W 333
W
Sbjct: 234 W 234
>pdb|3AL5|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL5|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL5|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL5|D Chain D, Crystal Structure Of Human Tyw5
pdb|3AL6|A Chain A, Crystal Structure Of Human Tyw5
pdb|3AL6|B Chain B, Crystal Structure Of Human Tyw5
pdb|3AL6|C Chain C, Crystal Structure Of Human Tyw5
pdb|3AL6|D Chain D, Crystal Structure Of Human Tyw5
Length = 338
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 256 VNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQ------EAGDS 309
+ + G+K+ +L +P + +Y + S++ ++D L + + + EAGD
Sbjct: 192 IQVTGKKRVVLFSPRDAQYL--YLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAGDV 249
Query: 310 IFVPSGWHHQVTNLEHTISINHNW 333
+F+P+ W H V + E + +N W
Sbjct: 250 LFIPALWFHNVISEEFGVGVNIFW 273
>pdb|2YU1|A Chain A, Crystal Structure Of Hjhdm1a Complexed With
A-ketoglutarate
pdb|2YU2|A Chain A, Crystal Structure Of Hjhdm1a Without A-Ketoglutarate
Length = 451
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 33/204 (16%)
Query: 157 NAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWL 216
N + MT+ ++T Y++ + E E LY + F+ + R V DW+
Sbjct: 114 NTQKGIEMTMAQWTRYYETPEE----EREKLYNVISLEFSHTRLENMVQRPSTVDFIDWV 169
Query: 217 NEYYSEHLEHKDD--------------YRFVYMGPKETWTPLHADVFHSYSW-SVNICGR 261
+ + HL+ ++ M + +T H D + W ++ G+
Sbjct: 170 DNMWPRHLKESQTESTNAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGK 229
Query: 262 KQWLL--LAPGNEKY----FKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSG 315
WL+ A E Y S G++ R D +E + G + +PSG
Sbjct: 230 VFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQR--------IELKQGYTFVIPSG 281
Query: 316 WHHQVTNLEHTISINHNWINGTNI 339
W H V T+ N+++ NI
Sbjct: 282 WIHAVYTPTDTLVFGGNFLHSFNI 305
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/146 (18%), Positives = 59/146 (40%), Gaps = 4/146 (2%)
Query: 198 DFKTEDIYRVPNVFSS-DWLNEYYSEH--LEHKDDYRFVYMGPKETWTPLHADVFHSYSW 254
D + ++ P + W+ + E E + ++ M ++++T H D + W
Sbjct: 197 DTRLSNLVETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDFHIDFGGTSVW 256
Query: 255 SVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPS 314
+ G K + L+ P N + S+ + + D + G ++F+P+
Sbjct: 257 YHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGD-QVDKCYKCSVKQGQTLFIPT 315
Query: 315 GWHHQVTNLEHTISINHNWINGTNID 340
GW H V ++ N+++ NI+
Sbjct: 316 GWIHAVLTPVDCLAFGGNFLHSLNIE 341
>pdb|2WWU|A Chain A, Crystal Structure Of The Catalytic Domain Of Phd Finger
Protein 8
Length = 371
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 36/162 (22%)
Query: 198 DFKTEDIYRVPNVFSS-DWLNEYYSEH--LEHKDDYRFVYMGPKETWTPLHADVFHSYSW 254
D + ++ P + W+ + E E + ++ M ++++T H D + W
Sbjct: 121 DTRLSNLVETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDFHIDFGGTSVW 180
Query: 255 SVNICGRKQWLLLAPGN----------------EKYFKDSMGNLISDMRSVDWSTLPRDT 298
+ G K + L+ P N E +F D + D
Sbjct: 181 YHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQV-----------------DK 223
Query: 299 VIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNID 340
+ G ++F+P+GW H V ++ N+++ NI+
Sbjct: 224 CYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIE 265
>pdb|3K3N|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8
pdb|3K3O|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Human
Phf8 Complexed With Alpha-Ketoglutarate
Length = 371
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 36/162 (22%)
Query: 198 DFKTEDIYRVPNVFSS-DWLNEYYSEH--LEHKDDYRFVYMGPKETWTPLHADVFHSYSW 254
D + ++ P + W+ + E E + ++ M ++++T H D + W
Sbjct: 113 DTRLSNLVETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDFHIDFGGTSVW 172
Query: 255 SVNICGRKQWLLLAPGN----------------EKYFKDSMGNLISDMRSVDWSTLPRDT 298
+ G K + L+ P N E +F D + D
Sbjct: 173 YHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQV-----------------DK 215
Query: 299 VIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNID 340
+ G ++F+P+GW H V ++ N+++ NI+
Sbjct: 216 CYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIE 257
>pdb|4DO0|A Chain A, Crystal Structure Of Human Phf8 In Complex With Daminozide
Length = 374
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 36/162 (22%)
Query: 198 DFKTEDIYRVPNVFSS-DWLNEYYSEH--LEHKDDYRFVYMGPKETWTPLHADVFHSYSW 254
D + ++ P + W+ + E E + ++ M ++++T H D + W
Sbjct: 124 DTRLSNLVETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDFHIDFGGTSVW 183
Query: 255 SVNICGRKQWLLLAPGN----------------EKYFKDSMGNLISDMRSVDWSTLPRDT 298
+ G K + L+ P N E +F D + D
Sbjct: 184 YHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQV-----------------DK 226
Query: 299 VIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNID 340
+ G ++F+P+GW H V ++ N+++ NI+
Sbjct: 227 CYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIE 268
>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
pdb|2YPD|B Chain B, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
Length = 392
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 304 QEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEID 358
Q GD+I +P+G HQV N I + ++++ ++ +H + L +K+EI+
Sbjct: 297 QFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFH-LTQELRLLKEEIN 350
>pdb|1OG3|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2 Mutant E189i In
Complex With Nad
Length = 226
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 65 LMLSDSCNSNEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSL 124
L+L + N N ++ V + NI PS YP FN+F S ++N ++
Sbjct: 31 LLLQEDFNMNAKLKVAWEEAKKRWNNIKPSRSYPKGFNDFHGTALVAYTGSIAVDFNRAV 90
Query: 125 HWVQNKQPNFEYLSNHY 141
+ F Y + HY
Sbjct: 91 REFKENPGQFHYKAFHY 107
>pdb|1GXY|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2; Crystal Form A (P21)
pdb|1GXY|B Chain B, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2; Crystal Form A (P21)
pdb|1GXZ|A Chain A, Crystal Structure Of The Eucaryotic Mono-Adp-
Ribosyltransferase Art2.2; Crystal Form B (P212121)
pdb|1GXZ|B Chain B, Crystal Structure Of The Eucaryotic Mono-Adp-
Ribosyltransferase Art2.2; Crystal Form B (P212121)
pdb|1GY0|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2; Crystal Form C
(P3121)
pdb|1OG1|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2 In Complex With Tad
Length = 226
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 65 LMLSDSCNSNEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSL 124
L+L + N N ++ V + NI PS YP FN+F S ++N ++
Sbjct: 31 LLLQEDFNMNAKLKVAWEEAKKRWNNIKPSRSYPKGFNDFHGTALVAYTGSIAVDFNRAV 90
Query: 125 HWVQNKQPNFEYLSNHY 141
+ F Y + HY
Sbjct: 91 REFKENPGQFHYKAFHY 107
>pdb|1OG4|A Chain A, Crystal Structure Of The Eucaryotic
Mono-adp-ribosyltransferase Art2.2 Mutant E189a In
Complex With Nadh
Length = 226
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 65 LMLSDSCNSNEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSL 124
L+L + N N ++ V + NI PS YP FN+F S ++N ++
Sbjct: 31 LLLQEDFNMNAKLKVAWEEAKKRWNNIKPSRSYPKGFNDFHGTALVAYTGSIAVDFNRAV 90
Query: 125 HWVQNKQPNFEYLSNHY 141
+ F Y + HY
Sbjct: 91 REFKENPGQFHYKAFHY 107
>pdb|1Y8C|A Chain A, Crystal Structure Of A S-Adenosylmethionine-Dependent
Methyltransferase From Clostridium Acetobutylicum Atcc
824
Length = 246
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 105 LSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYY----FNAHE 160
L+ N+ F L +C + + + + + F+ +SNH + V + + NSYY +
Sbjct: 96 LNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNN 155
Query: 161 KTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTE 202
N E YW+N+ + L ++++D F + F E
Sbjct: 156 DFNYDDDEVFYYWENQFEDDLVSXYISFFVRDGEFYKRFDEE 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,415,944
Number of Sequences: 62578
Number of extensions: 631925
Number of successful extensions: 1383
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1338
Number of HSP's gapped (non-prelim): 35
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)