RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12281
(456 letters)
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural
genomics consortium, SGC, chromatin regulator,
developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A
3ldb_A*
Length = 336
Score = 182 bits (463), Expect = 7e-54
Identities = 59/290 (20%), Positives = 110/290 (37%), Gaps = 38/290 (13%)
Query: 101 FNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHE 160
+ KP +L + W++ W E L Y + + N
Sbjct: 61 VERYERPYKPVVLLNAQEGWSAQEKW------TLERLKRKYRNQKFKCGEDND-----GY 109
Query: 161 KTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHF---TRDFKTEDIYRVPNVFSSDWLN 217
M +K Y Y ++ + + Y+ D + + K + Y+VP F+ D
Sbjct: 110 SVKMKMKYYIEYMES------TRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQ 163
Query: 218 EYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYF-- 275
+ + YR+ MGP + T +H D + +W+ + G K+W L +
Sbjct: 164 YAGEKR---RPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIK 220
Query: 276 --KDSMGNLISDMRSVDWSTLPRD---------TVIIVEQEAGDSIFVPSGWHHQVTNLE 324
+D GN + + PR + + Q+ G+++FVP GW H V NL+
Sbjct: 221 VTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLD 280
Query: 325 HTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQLML 374
TI+I N+ + TN V+H+ V + ++ + + ++
Sbjct: 281 TTIAITQNFASSTNFPVVWHKTVRGRPKLSRKWY--RILKQEHPELAVLA 328
>3uyj_A Lysine-specific demethylase 8; jellyroll-like all beta fold,
nuclear, oxidored; HET: AKG; 2.35A {Homo sapiens} PDB:
4aap_A*
Length = 248
Score = 166 bits (423), Expect = 5e-49
Identities = 49/242 (20%), Positives = 85/242 (35%), Gaps = 31/242 (12%)
Query: 101 FNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHE 160
FL +P ILK + W W + EY+ G VPV + Y
Sbjct: 28 REQFLVPGRPVILKGVADHWPCMQKW------SLEYIQEIAGCRTVPVEVGSRYTDEEWS 81
Query: 161 KTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKT-EDIYRVPNVFSSDWLNEY 219
+T MT+ E+ + +E + YL + +P+ S E
Sbjct: 82 QTLMTVNEFISKYIV------NEPRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDGEE- 134
Query: 220 YSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSM 279
++ + GP+ T +PLH D + + V + GRK L +P
Sbjct: 135 -------EEITINAWFGPQGTISPLHQDPQQN--FLVQVMGRKYIRLYSPQESGALYPHD 185
Query: 280 GNLISDMRSVDWST--------LPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINH 331
+L+ + VD + + G+ +F+P + H V L+ + S++
Sbjct: 186 THLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEILFIPVKYWHYVRALDLSFSVSF 245
Query: 332 NW 333
W
Sbjct: 246 WW 247
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin
modification, methylated H3K9, mental retardation,
metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A
{Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Length = 371
Score = 149 bits (377), Expect = 4e-41
Identities = 36/234 (15%), Positives = 85/234 (36%), Gaps = 19/234 (8%)
Query: 145 EVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDI 204
E+ V + M L ++ Y+ + E + + F+ D + ++
Sbjct: 72 EIDVIDVTR-----QADCKMKLGDFVKYYYSGKR------EKVLNVISLEFS-DTRLSNL 119
Query: 205 YRVPNVFSS-DWLNEYYSEHLEHK--DDYRFVYMGPKETWTPLHADVFHSYSWSVNICGR 261
P + W+ + E + + ++ M ++++T H D + W + G
Sbjct: 120 VETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDFHIDFGGTSVWYHVLKGE 179
Query: 262 KQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVT 321
K + L+ P N + S ++ + D + G ++F+P+GW H V
Sbjct: 180 KIFYLIRPTNANLTLFECWSS-SSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWIHAVL 238
Query: 322 NLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQLMLQ 375
++ N+++ NI+ +E + D ++ + C + +
Sbjct: 239 TPVDCLAFGGNFLHSLNIEMQLKAY--EIE-KRLSTADLFRFPNFETICWYVGK 289
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 152 bits (383), Expect = 5e-41
Identities = 47/291 (16%), Positives = 97/291 (33%), Gaps = 19/291 (6%)
Query: 89 YNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPV 148
I +L K+ + + L + GD + V
Sbjct: 135 DEIIIKMHGSQLTQRYLEKHGFDVPIMVPKLDDLGLRLPSPTFSVMDVERYVGGDKVIDV 194
Query: 149 ANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVP 208
+ + MTL Y Y+ N + + F+ D K ++ VP
Sbjct: 195 IDVAR-----QADSKMTLHNYVKYFMN------PNRPKVLNVISLEFS-DTKMSELVEVP 242
Query: 209 NVFSS-DWLNEYYSEHLEHK--DDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWL 265
++ W+ Y+ + ++ MG ++++T H D + W + G K +
Sbjct: 243 DIAKKLSWVENYWPDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFY 302
Query: 266 LLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEH 325
L+ P +E + + S +S + D + G ++FVP+GW H V +
Sbjct: 303 LIKPTDENLARYESWSS-SVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQD 361
Query: 326 TISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQLMLQV 376
++ N+++ NI + + D + + C + +
Sbjct: 362 CMAFGGNFLHNLNIGMQLRCYEMEK---RLKTPDLFKFPFFEAICWFVAKN 409
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification
enzyme, unknown function; 2.50A {Homo sapiens} PDB:
3al6_A*
Length = 338
Score = 148 bits (375), Expect = 5e-41
Identities = 41/247 (16%), Positives = 84/247 (34%), Gaps = 20/247 (8%)
Query: 101 FNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHE 160
+ + KP +L+ ++ + W +YLS G EV + +
Sbjct: 43 MQHLYPQRKPLVLEG-IDLGPCTSKW------TVDYLSQVGGKKEVKIHVAAVAQMDFIS 95
Query: 161 K----TNMTLKEYTIYWQNKIDGKLSETE-PLYYLKDWHFTRDFKTEDIYRVPNVFSSDW 215
K + + + + +E YYL+ DI + + D
Sbjct: 96 KNFVYRTLPFDQLVQRAAEEKHKEFFVSEDEKYYLRSLGEDPRKDVADIRKQFPLLKGDI 155
Query: 216 LNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYF 275
+ E + + H DV + + + G+K+ +L +P + +Y
Sbjct: 156 KFPEF--FKEEQFFSSVFRISSPGLQLWTHYDVMDN--LLIQVTGKKRVVLFSPRDAQYL 211
Query: 276 KDSMGNL-ISDMRSVDWSTLPR---DTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINH 331
+ ++ + D + P EAGD +F+P+ W H V + E + +N
Sbjct: 212 YLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNI 271
Query: 332 NWINGTN 338
W + +
Sbjct: 272 FWKHLPS 278
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji
domain lysine demethylase, metal-binding, zinc,
zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A*
3u78_A*
Length = 397
Score = 142 bits (359), Expect = 3e-38
Identities = 43/240 (17%), Positives = 87/240 (36%), Gaps = 19/240 (7%)
Query: 108 NKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLK 167
+ P ++ + L + GD + V + + MTL
Sbjct: 66 DVPIMVPKLDD---LGLRLPSPTFSVMDVERYVGGDKVIDVIDVAR-----QADSKMTLH 117
Query: 168 EYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSS-DWLNEYYSEHLEH 226
Y Y+ N + + F+ D K ++ VP++ W+ Y+ +
Sbjct: 118 NYVKYFMNP------NRPKVLNVISLEFS-DTKMSELVEVPDIAKKLSWVENYWPDDSVF 170
Query: 227 K--DDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLIS 284
++ MG ++++T H D + W + G K + L+ P +E + + S
Sbjct: 171 PKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSS-S 229
Query: 285 DMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYH 344
+S + D + G ++FVP+GW H V + ++ N+++ NI
Sbjct: 230 VTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLR 289
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH,
oxygenase, transcription, inhibitor oxoglutarate,
asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens}
PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A*
2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A*
3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A*
...
Length = 349
Score = 137 bits (346), Expect = 6e-37
Identities = 44/284 (15%), Positives = 94/284 (33%), Gaps = 36/284 (12%)
Query: 101 FNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFN-AH 159
+ +P +L + +L W + EYL + G+ + V + +++ F
Sbjct: 52 AEELIENEEPVVLTDTNLVY-PALKW------DLEYLQENIGNGDFSVYSASTHKFLYYD 104
Query: 160 EKTNMTLKEYTIYWQNK-----------IDGKLSETEPLYYLKDWHFTRDFKTEDIYRVP 208
EK + + + D + E YL D I
Sbjct: 105 EKKMANFQNFKPRSNREEMKFHEFVEKLQDIQQRGGEERLYL--QQTLNDTVGRKIVMDF 162
Query: 209 NVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLA 268
F+ +W+N+ + + + +G + TP H + + I G K+ +L
Sbjct: 163 LGFNWNWINKQQGKRGWGQLTSNLLLIGMEGNVTPAHYGEQQN--FFAQIKGYKRCILFP 220
Query: 269 PGNEKYFKDSMGNLISDMRSV---------DWSTLPRDTVIIVEQEAGDSIFVPSGWHHQ 319
P + + D +S + GD +++P W H
Sbjct: 221 PDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHH 280
Query: 320 VTNLEH---TISINHNWINGTNIDHVYHEMVSHL-EAVKKEIDD 359
+ +L + TI++N + + + + +H A+ + I+
Sbjct: 281 IESLLNGGITITVNFWYKGAPTPKRIEYPLKAHQKVAIMRNIEK 324
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 137 bits (344), Expect = 6e-36
Identities = 49/365 (13%), Positives = 111/365 (30%), Gaps = 34/365 (9%)
Query: 14 EYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIKSVMLMLSDSCNS 73
E D + Y+ P ++ + + S L +S
Sbjct: 40 EKAADIDLYHCPNCEVLHGPSIMKKRRGSSKGHDTHKGKPVKTGSPTFVRELRSRTFDSS 99
Query: 74 NEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPN 133
+E I T V++ + S P + P+
Sbjct: 100 DEVILKPTGNQLTVEFLEENSFSVPILVLKK--------------------DGLGMTLPS 139
Query: 134 FEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDW 193
+ + M L ++ Y+ + E + +
Sbjct: 140 PSFTVRDVEHYVGSDKEIDVIDVTRQADCKMKLGDFVKYYYSGKR------EKVLNVISL 193
Query: 194 HFTRDFKTEDIYRVPNVFSS-DWLNEYYSEHL--EHKDDYRFVYMGPKETWTPLHADVFH 250
F+ D + ++ P + W+ + E E + ++ M ++++T H D
Sbjct: 194 EFS-DTRLSNLVETPKIVRKLSWVENLWPEECVFERPNVQKYCLMSVRDSYTDFHIDFGG 252
Query: 251 SYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSI 310
+ W + G K + L+ P N + S+ ++ + D + G ++
Sbjct: 253 TSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSN-QNEMFFGDQVDKCYKCSVKQGQTL 311
Query: 311 FVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHC 370
F+P+GW H V ++ N+++ NI+ +E + D ++ + C
Sbjct: 312 FIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLK--AYEIE-KRLSTADLFRFPNFETIC 368
Query: 371 QLMLQ 375
+ +
Sbjct: 369 WYVGK 373
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent
dioxygenases, histone TAI protein, protein binding; HET:
OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B*
3pus_A*
Length = 392
Score = 132 bits (334), Expect = 7e-35
Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 25/243 (10%)
Query: 108 NKPFILKS---CVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNM 164
+P ++ + +V + + + V V + + M
Sbjct: 65 TEPILVPKKDGLGLAVPAPTFYVSD------VENYVGPERSVDVTDVTK-----QKDCKM 113
Query: 165 TLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSS-DWLNEYYSEH 223
LKE+ Y+ + + + + + + F D + P++ W+ Y+ +
Sbjct: 114 KLKEFVDYYYS------TNRKRVLNVTNLEF-SDTRMSSFVEPPDIVKKLSWVENYWPDD 166
Query: 224 LEHK--DDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGN 281
++ + K+++T H D + +W + G K + L+ P +
Sbjct: 167 ALLAKPKVTKYCLICVKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWR 226
Query: 282 LISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDH 341
+ S + D + G ++F+PSGW + ++ ++++ +++
Sbjct: 227 S-ASNHSEMFFADQVDKCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEM 285
Query: 342 VYH 344
Sbjct: 286 QMR 288
>2yu1_A JMJC domain-containing histone demethylation PROT;
JMJC-domain-containing histone demethylases,
oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB:
2yu2_A
Length = 451
Score = 131 bits (329), Expect = 9e-34
Identities = 43/266 (16%), Positives = 83/266 (31%), Gaps = 44/266 (16%)
Query: 133 NFEYLSNHYG-DIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLK 191
+ G V V + N+ + MT+ ++T Y++ + Y
Sbjct: 94 TVNDVKMCVGSRRMVDVMDVNT-----QKGIEMTMAQWTRYYETPEEE-----REKLYNV 143
Query: 192 DWHFTRDFKTEDIYRVPNVFSS-DWLNEYYSEHLEHKDD--------------YRFVYMG 236
+ E++ + P+ DW++ + HL+ ++ M
Sbjct: 144 ISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMS 203
Query: 237 PKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNE---KYFKDSMGNLISDMRSVDWST 293
+ +T H D + W G K + L+ P Y + D+ D
Sbjct: 204 VRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDR-- 261
Query: 294 LPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAV 353
+E + G + +PSGW H V T+ N+++ NI L+
Sbjct: 262 --VSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPM-------QLKIY 312
Query: 354 KKEIDDCKDMD----DWTSHCQLMLQ 375
E + C +L+
Sbjct: 313 NIEDRTRVPNKFRYPFYYEMCWYVLE 338
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 121 bits (304), Expect = 4e-30
Identities = 49/375 (13%), Positives = 110/375 (29%), Gaps = 37/375 (9%)
Query: 8 IEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIKPSVIKSVMLML 67
+E FEY ++ + CP + K + +
Sbjct: 73 SGLEQFEYYLYEK---FFCPKCVPHTGHSIRYKVVAPHRYRWYSPNEKHLGIEVGSKTWI 129
Query: 68 SDSCNSNEQINVTTTALPQVDYNIDPSHIYPYCFNNFLSKNKPFILKSCVNEWNSSLHWV 127
D + T + + + K F++K + +
Sbjct: 130 EDFITRENTVPSPTDDEVCIVEDGYEFRREFEKLGGADNWGKVFMVKDM----DGLNMTM 185
Query: 128 QNKQPNFEYLSNHYG-DIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEP 186
+ E + G D EV + + +M L + +++ +
Sbjct: 186 PKPGFDLEDVVKIMGSDYEVDTIDVYN-----QSTYSMKLDTFRKLFRDTKNRP-----L 235
Query: 187 LYYLKDWHFTRDFKTEDIYRVPN-VFSSDWLNEYYSEHLEHKDD---------------- 229
LY F+ + + ++I + P V +N + + +
Sbjct: 236 LYNFLSLEFSDNNEMKEIAKPPRFVQEISMVNRLWPDVSGAEYIKLLQREEYLPEDQRPK 295
Query: 230 -YRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRS 288
+F G ++T H D S + + G K + + AP + + D +
Sbjct: 296 VEQFCLAGMAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETSPDTTT 355
Query: 289 VDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVS 348
+ + V V + G ++ +P+GW H V ++ N+++ N++
Sbjct: 356 W-FGDIANGAVKRVVIKEGQTLLIPAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMRVYHL 414
Query: 349 HLEAVKKEIDDCKDM 363
K+ + K
Sbjct: 415 ENAIRKEIRSEEKFY 429
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces
cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Length = 83
Score = 110 bits (277), Expect = 5e-30
Identities = 29/56 (51%), Positives = 40/56 (71%)
Query: 1 MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
M +DEIEIED ++ +++ + YPCPCGDRFQI + + GE VA CP+CSL+I
Sbjct: 1 MVSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEKVAVCPSCSLMID 56
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger,
ADP-ribosylating toxin, structural genomics, NPPSFA;
NMR {Mus musculus} SCOP: g.41.17.1
Length = 83
Score = 109 bits (274), Expect = 2e-29
Identities = 44/56 (78%), Positives = 51/56 (91%)
Query: 1 MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
M+V+HDE+EIEDF+YDED ETY+YPCPCGD F ITKE L+ GEDVATCP+CSLIIK
Sbjct: 8 MAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENGEDVATCPSCSLIIK 63
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR
{Homo sapiens}
Length = 89
Score = 108 bits (272), Expect = 3e-29
Identities = 44/56 (78%), Positives = 51/56 (91%)
Query: 1 MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
M+V+HDE+EIEDF+YDED ETY+YPCPCGD F ITKE L+ GEDVATCP+CSLIIK
Sbjct: 1 MAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIK 56
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone
demethylation, oxygenase, chromatin modification; HET:
8XQ; 1.80A {Homo sapiens}
Length = 332
Score = 62.5 bits (151), Expect = 6e-11
Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 7/107 (6%)
Query: 233 VYMGPKETWTPLHADVFHSYSWSVNIC-GRKQWLLLAPGNEKYFKDSMGNLISDMRSVDW 291
+YM + TP H + + S ++NI G +W + + D + W
Sbjct: 205 LYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETISAFCDRHGVDYLTGSW 264
Query: 292 STLPRD------TVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHN 332
+ D V Q GD +++ +G H V +I N
Sbjct: 265 WPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWN 311
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 56.4 bits (136), Expect = 9e-10
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 1 MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
+ ++ +E+ ++E D ++Y C CG ++ ++K++ + + +C TCSLII+
Sbjct: 90 VGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAEE-VSLISCDTCSLIIE 144
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1,
inhibitor, lysine specific HI demethylase; HET: K0I;
1.86A {Homo sapiens} PDB: 2xue_A*
Length = 510
Score = 56.4 bits (135), Expect = 9e-09
Identities = 25/158 (15%), Positives = 44/158 (27%), Gaps = 20/158 (12%)
Query: 233 VYMGPKETWTPLHADVFHSYSWSVNICG-RKQWLLLAPGNEKYFKDSMGNLISDMRSVDW 291
+YM + TP H + + S ++NI +W + + D + W
Sbjct: 239 LYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFAVHEHYWETISAFCDRHGVDYLTGSW 298
Query: 292 STLPRD------TVIIVEQEAGDSIFVPSGWHHQVTNLEHT--ISINHNWINGT------ 337
+ D V Q GD +++ +G H V I+ N +
Sbjct: 299 WPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAYQYQLAL 358
Query: 338 -----NIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHC 370
N +V + K D
Sbjct: 359 ERYEWNEVKNVKSIVPMIHVSWNVARTVKISDPDLFKM 396
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 55.2 bits (132), Expect = 2e-08
Identities = 27/152 (17%), Positives = 46/152 (30%), Gaps = 20/152 (13%)
Query: 233 VYMGPKETWTPLHADVFHSYSWSVNICG-RKQWLLLAPGNEKYFKDSMGNLISDMRSVDW 291
+YM + TP H + + S ++NI +W ++ G D + W
Sbjct: 264 LYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEGYWGVLNDFCEKNNLNFLMGSW 323
Query: 292 STLPRD------TVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGT-------- 337
D V Q GD +++ +G H V + +I N T
Sbjct: 324 WPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTACQYKLAV 383
Query: 338 -----NIDHVYHEMVSHLEAVKKEIDDCKDMD 364
N +V + + K D
Sbjct: 384 ERYEWNKLQSVKSIVPMVHLSWNMARNIKVSD 415
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural
genomics consortium, SGC, HI demethylase,
oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Length = 489
Score = 52.6 bits (125), Expect = 1e-07
Identities = 25/167 (14%), Positives = 59/167 (35%), Gaps = 17/167 (10%)
Query: 236 GPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLP 295
P H D + + + + GRK W + P + ++ S ++S
Sbjct: 172 PPNSQGFAPHYDDIEA--FVLQLEGRKLWRVYRP-------RAPTEELALTSSPNFSQDD 222
Query: 296 RDTVII-VEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLE-AV 353
++ E GD ++ P G+ HQ + S+ H ++ + + + L AV
Sbjct: 223 LGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSL-HLTLSTYQRNTWGDFLEAILPLAV 281
Query: 354 KKEIDDCKDM-----DDWTSHCQLMLQVSFGINFRQFFDMLKFICQK 395
+ +++ + D+ + S F + ++ + +
Sbjct: 282 QAAMEENVEFRRGLPRDFMDYMGAQHSDSKDPRRTAFMEKVRVLVAR 328
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein;
HET: OGA; 2.57A {Homo sapiens}
Length = 442
Score = 51.8 bits (123), Expect = 3e-07
Identities = 20/145 (13%), Positives = 35/145 (24%), Gaps = 12/145 (8%)
Query: 215 WLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKY 274
+ E + P H D + + G K W L P
Sbjct: 126 RIQEKLECYFGSLVGSNVYITPAGSQGLPPHYDDVEVFIL--QLEGEKHWRLYHPTVPLA 183
Query: 275 FKDSMGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWI 334
SV+ V + GD ++ P G HQ H I
Sbjct: 184 ----------REYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLAHSTHVTI 233
Query: 335 NGTNIDHVYHEMVSHLEAVKKEIDD 359
+ + ++ + + +
Sbjct: 234 STYQNNSWGDFLLDTISGLVFDTAK 258
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center
for structural genomics, JCSG, protein structure INI
PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP:
b.82.2.11
Length = 342
Score = 45.9 bits (108), Expect = 1e-05
Identities = 27/193 (13%), Positives = 48/193 (24%), Gaps = 15/193 (7%)
Query: 172 YWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDW-LNEYYSEHLEH---K 227
+ +G + + + + E L
Sbjct: 81 AVIEESEGITDR-FLVSPAEALEWYEKGAALEFDFTDLFIPQVRRWIEKLKAELRLPAGT 139
Query: 228 DDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYF----KDSMGNLI 283
VY H D + + I G K W L N S
Sbjct: 140 SSKAIVYAAKNGGGFKAHFDAYTNLI--FQIQGEKTWKLAKNENVSNPMQHYDLSEAPYY 197
Query: 284 SDMRSVDWSTLPRD----TVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNI 339
D W P IV G +++P G H + + T+++N + +
Sbjct: 198 PDDLQSYWKGDPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWL 257
Query: 340 DHVYHEMVSHLEA 352
D + + L +
Sbjct: 258 DLMLAALRKKLIS 270
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 5e-05
Identities = 87/619 (14%), Positives = 160/619 (25%), Gaps = 220/619 (35%)
Query: 4 YHDEIEI--EDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK-PSVI 60
Y D + + + F + D C D + K L E II +
Sbjct: 18 YKDILSVFEDAFVDNFD---------CKDVQDMPKSILSKEE-------IDHIIMSKDAV 61
Query: 61 KSVMLMLSDSCNSNEQI--NVTTTALPQVDYN----------IDPSHI---YPYCFNNFL 105
+ + + E++ L +++Y PS + Y +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVL-RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 106 SKNKPFI------------LKSCVNEWN---------------SSL-------------- 124
+ N+ F L+ + E + +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 125 ----HWV---QNKQPN--FEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQN 175
W+ P E L I+ + + + N + + E ++
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 176 KIDGKLSETEPLYYLKD-WH------F---------TRDFKTEDI------YRVPNVFSS 213
K L L + + F TR + D + S
Sbjct: 241 K-----PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 214 DWLNEYYSEHLEHKDDYRFVYMG----PKETWT--PLHADVFHSYSWSVNICGRKQWLLL 267
L + L K ++ P+E T P + + S + W
Sbjct: 296 MTLTPDEVKSLLLK----YLDCRPQDLPREVLTTNPRRLSII-AESIRDGLATWDNW--- 347
Query: 268 APGNEKYFKDSMGNLIS---------DMRS--VDWSTLPRDTVIIVEQEAGDSIFVPSG- 315
+ D + +I + R S P I P+
Sbjct: 348 ----KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI------------PTIL 391
Query: 316 ----WHH-------QVTNLEHTIS-INHNWINGT-NIDHVYHEMVSHLEAV----KKEID 358
W V N H S + T +I +Y E+ LE + +D
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 359 -----DCKDMDD---------WTS----HCQLMLQVSFGINFRQ-FFDMLKFICQK-RLT 398
D DD + S H + + FR F D +F+ QK R
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIRHD 510
Query: 399 SLKNGTT---------IRLYGNWILSLDHTMFDLR------------------KASDVLK 431
S + ++ Y +I + ++ K +D+L+
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYI-CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Query: 432 LCAQHEDWDLKLETNKLIE 450
+ ED + E +K ++
Sbjct: 570 IALMAEDEAIFEEAHKQVQ 588
Score = 40.6 bits (94), Expect = 0.001
Identities = 57/390 (14%), Positives = 111/390 (28%), Gaps = 137/390 (35%)
Query: 174 QNKIDGKLSETEPLYYLKD--WHFTRDFKTE-DIYRVP----NVFSSD------------ 214
+ +D + E + Y KD F F D V ++ S +
Sbjct: 4 HHHMDFETGEHQ--YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 215 -------WL-----NEYYSEHLE--HKDDYRFVYMGPKETWTPLH------ADVFHSYSW 254
W E + +E + +Y+F+ +P+ + + Y
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL-------MSPIKTEQRQPSMMTRMYIE 114
Query: 255 SVN-ICGRKQWLLLAPGN----EKYFKDSMGNLISDMRSVDW-----------STLPRDT 298
+ + Q + A N + Y K + + ++R + + D
Sbjct: 115 QRDRLYNDNQ--VFAKYNVSRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 299 V--IIVEQEAGDSIFVPSGW------HHQVTNLEHTISINHNWINGTNIDHVYHEMVSHL 350
V+ + IF W + T LE + + ID + H
Sbjct: 171 CLSYKVQCKMDFKIF----WLNLKNCNSPETVLEMLQKLLYQ------IDPNWTSRSDHS 220
Query: 351 EAVKKEIDDCKD-----------------MDD-WTS--------HCQLMLQVSFGINFRQ 384
+K I + + + + C+++L F+Q
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT----RFKQ 276
Query: 385 FFDMLKFICQKRLT------SLKNGTTIRLYGNWILSLDHTMFDL-RKASD----VLKLC 433
D L ++ +L L + LD DL R+ L +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY---LDCRPQDLPREVLTTNPRRLSII 333
Query: 434 AQ--HED---WD--LKLETNKLIEDLNSSI 456
A+ + WD + +KL + SS+
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Score = 32.1 bits (72), Expect = 0.46
Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 23/109 (21%)
Query: 317 HHQVTNLEHTISINHNWINGTNIDHVYHEMVSH-LEAVKKEIDDCKDMDDWT------SH 369
HH +++ + Y +++S +A D CKD+ D
Sbjct: 1 HHHHHHMDFETG---------EHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEE 50
Query: 370 CQLMLQVSFGIN-FRQFFDMLKFICQKRLTSLKN--GTTIRLYGNWILS 415
++ ++ + F L K+ ++ +R+ +++S
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTL---LSKQEEMVQKFVEEVLRINYKFLMS 96
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded
beta helix, demethylase, oxygenase, SGC, STR genomics,
structural genomics consortium, oxidoreductase; HET: MLY
ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A*
2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A*
3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A*
2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Length = 381
Score = 38.5 bits (88), Expect = 0.004
Identities = 37/252 (14%), Positives = 74/252 (29%), Gaps = 26/252 (10%)
Query: 107 KNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTL 166
+ I + L Q+ + + NS + +
Sbjct: 79 ASYDDIDDLVIPAPIQQLVTGQSGLFTQYNIQKKAMTVREFRKIANSDKYCTPRYSEFEE 138
Query: 167 KEYTIYWQNKIDGKLSETEPLYY--LKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHL 224
E YW+N L+ P+Y + + + +I R+ + D + + +
Sbjct: 139 LERK-YWKN-----LTFNPPIYGADVNGTLYEKHVDEWNIGRLRTIL--DLVEKESGITI 190
Query: 225 EHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGR-KQWLLLAPGNEKYFKDSMGNLI 283
E + ++Y G +T H + YS + G K W + P + K +
Sbjct: 191 EGVN-TPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFF 249
Query: 284 SDMRSVDWSTLPRDT--------------VIIVEQEAGDSIFVPSGWHHQVTNLEHTISI 329
+ L V QEAG+ + +H N +
Sbjct: 250 PGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAE 309
Query: 330 NHNWINGTNIDH 341
+ N+ I++
Sbjct: 310 STNFATRRWIEY 321
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone
demethylase, H3K9, jumonji domain-CONT protein 2D,
oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A*
2w2i_A*
Length = 354
Score = 38.0 bits (87), Expect = 0.005
Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 26/208 (12%)
Query: 151 CNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLY--YLKDWHFTRDFKTEDIYRVP 208
NS + N E YW+N P+Y + F + K ++ +
Sbjct: 105 ANSKKYQTPPHQNFEDLE-RKYWKN-----RIYNSPIYGADISGSLFDENTKQWNLGHLG 158
Query: 209 NVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGR-KQWLLL 267
+ L + +E + ++Y G +T H + YS + G K W ++
Sbjct: 159 TIQDL--LEKECGVVIEGVN-TPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVV 215
Query: 268 APGNEKYFKDSMGNLISDMRSVDWSTLPRDT--------------VIIVEQEAGDSIFVP 313
P + + + L + L + QEAG+ +
Sbjct: 216 PPEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVTF 275
Query: 314 SGWHHQVTNLEHTISINHNWINGTNIDH 341
+H N + N+ ID+
Sbjct: 276 PYGYHAGFNHGFNCAEAINFATPRWIDY 303
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 36.6 bits (84), Expect = 0.009
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 6 DEIEIEDFEYDEDDETYYYPCP-CGDRFQITKEQLKAGEDVATCPTCSLIIKPSVI 60
E + + CP C E+ G+ V C C L++ ++
Sbjct: 4 RESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVV--CALCGLVLSDKLV 57
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone
demethylase, catalytic core, oxidoreductase; HET: DNA
AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Length = 373
Score = 36.2 bits (82), Expect = 0.020
Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 15/115 (13%)
Query: 233 VYMGPKETWTPLHADVFHSYSWSVNICGR-KQWLLLAPGNEKYFKDSMGNLISDMRSVDW 291
+Y G + H + YS + G KQW + + F M +
Sbjct: 223 LYAGLWKASFSWHLEDQDLYSINYIHFGAPKQWYSIPQEDRFKFYKFMQEQFPEEAKNCP 282
Query: 292 STLPRDT--------------VIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHN 332
L + G+ + +H N + ++ + N
Sbjct: 283 EFLRHKMFLASPKLLQENGIRCNEIVHHEGEFMITYPYGYHAGFNYGYNLAESVN 337
>2wp0_C Chromosomal replication initiator protein DNAA; DNA binding
protein, nucleotide-binding, DNA replication initiation,
DIAA, HOBA; 2.67A {Helicobacter pylori}
Length = 112
Score = 31.4 bits (70), Expect = 0.20
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 176 KIDGKLSETEPLYYLKDWHFTRDFKTED--IYRVPNVFSSDWLNEYYSEHLE 225
K + K+S E Y + + D + PN + Y L+
Sbjct: 16 KQNPKVSLIEYENYFSQLKYNPNASKSDIAFFYAPNQVLCTTITAKYGALLK 67
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle,
phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A
{Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A
1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A*
3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Length = 190
Score = 31.6 bits (71), Expect = 0.33
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 295 PRDTVIIVEQEAGDSIFVPSGWHHQVTN 322
P + E G ++VP W H+ N
Sbjct: 114 PEGDAKWISMEPGTVVYVPPYWAHRTVN 141
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.93
Identities = 21/96 (21%), Positives = 30/96 (31%), Gaps = 41/96 (42%)
Query: 249 FHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLI-----------------SDMRSVDW 291
FHS+ LL P ++ KD + N + SD+R +
Sbjct: 427 FHSH-------------LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 292 STLPRDTVIIVEQEAGDSIFV-PSGWHHQVTNLEHT 326
S R IV+ I P W T + T
Sbjct: 474 SISER----IVDC-----IIRLPVKW-ETTTQFKAT 499
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family,
metal-binding site, beta barrel, PSI-2, NYSG structural
genomics; 2.00A {Halorhodospira halophila SL1}
Length = 167
Score = 29.6 bits (66), Expect = 1.3
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 305 EAGDSIFVPSGWHHQVTN 322
D +++ HQ+
Sbjct: 99 TPLDCVYIAPHAWHQIHA 116
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis,
resistomycin, metalloprotein, cyclase, lyase; 1.20A
{Streptomyces resistomycificus} PDB: 3ht2_A
Length = 145
Score = 29.5 bits (66), Expect = 1.3
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 305 EAGDSIFVPSGWHHQVTN 322
G++IF+P G H
Sbjct: 84 GPGEAIFIPRGEPHGFVT 101
>2e0g_A Chromosomal replication initiator protein DNAA; domain structure,
structural genomics, NPPSFA; NMR {Escherichia coli K12}
Length = 107
Score = 28.7 bits (64), Expect = 1.5
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 207 VPNVFSSDWLNEYYSEHLE 225
PN F DW+ + Y ++
Sbjct: 41 APNRFVLDWVRDKYLNNIN 59
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction,
cupin, immune system; 1.40A {Xanthomonas campestris}
PDB: 2ilb_A 3h50_A
Length = 113
Score = 28.6 bits (64), Expect = 1.5
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 305 EAGDSIFVPSGWHHQVTN 322
+AG I + G H++ N
Sbjct: 67 QAGSLIAIERGQAHEIRN 84
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology,
structural genomics, GEBA, midwest center structural
genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Length = 126
Score = 29.1 bits (65), Expect = 1.6
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 305 EAGDSIFVPSGWHHQVTNLE 324
G + +P G H+ E
Sbjct: 84 RPGMAYTIPGGVRHRARTFE 103
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris
CGA009} PDB: 3lag_A*
Length = 98
Score = 28.3 bits (63), Expect = 1.6
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 293 TLPRDTVIIVEQEAGDSIFVPSGWHHQVTN 322
P T + + + G S +G H V N
Sbjct: 52 VAPDGTRSLAQLKTGRSYARKAGVQHDVRN 81
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural
genomics, PSI-2, protein structur initiative; 1.85A
{Rhodopseudomonas palustris}
Length = 156
Score = 29.1 bits (65), Expect = 1.6
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 305 EAGDSIFVPSGWHHQVTNLE 324
GD +F+P HQ
Sbjct: 87 AQGDLVFIPPMTWHQFRANR 106
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint
center for structural genomics, J protein structure
initiative; 1.90A {Salmonella typhimurium LT2} SCOP:
b.82.1.24
Length = 133
Score = 28.8 bits (64), Expect = 1.7
Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 29/101 (28%)
Query: 261 RKQWLLLAPGNEKYFKD----------SMGNLISDMRSVDWSTLPRDTVIIV-------- 302
+ A + D + G + D W TL D + +V
Sbjct: 31 KFGRFDGAEPHCVGLTDLVTEQDGSSMAAGFMQWDNAFFPW-TLNYDEIDMVLEGELHVR 89
Query: 303 ------EQEAGDSIFVPSGWHHQVTNLE----HTISINHNW 333
+AGD +F+P G + ++ NW
Sbjct: 90 HEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFLYVAWPANW 130
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold,
structural genomics, joint for structural genomics,
JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Length = 133
Score = 28.6 bits (64), Expect = 1.8
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 305 EAGDSIFVPSGWHHQVTN 322
+AGD F SG H + N
Sbjct: 101 KAGDVCFTDSGESHSIEN 118
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold,
structural genomics, joint for structural genomics,
JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Length = 97
Score = 28.3 bits (63), Expect = 1.9
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 297 DTVIIVEQEAGDSIFVPSGWHHQVTN 322
+ + + G S P G H V N
Sbjct: 56 EGSVTSQLTRGVSYTRPEGVEHNVIN 81
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
protein, structural protein; 2.70A {Staphylococcus
epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Length = 729
Score = 29.9 bits (67), Expect = 1.9
Identities = 28/282 (9%), Positives = 73/282 (25%), Gaps = 31/282 (10%)
Query: 37 EQLKAGEDVATCPTCSLIIKPSVIKSVMLMLSDSCNSNEQINVTTTALPQVDYNIDPSHI 96
E L D + + V + +T + D +
Sbjct: 173 ENLNTYVDWSFVLEYMKYVNKFVRIFNFPFYFRGEVYDPFETLTLSEQNFDILFKDYVNS 232
Query: 97 YPYCFNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYF 156
+ + + + + ++ N Y ++ +E+
Sbjct: 233 FYDAIKRATNPKVREFIVTKMGNKIANEFEPTRYDINERYQTHKDTLVELSKFLHVHLVK 292
Query: 157 NAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPN------- 209
N + +K + L ++K+ R K +Y + +
Sbjct: 293 NQKLINKIETILLMNNETDKAFKVNQFRKTLRHVKNIVLRRKNKERSLYDLTDKEDNVKP 352
Query: 210 ---VFSSDWLNEY-------YSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNIC 259
VF S Y Y ++ +YR+++ + +V + V
Sbjct: 353 KTIVFESFGGKNYSDSPKYIYEYMQKYYPNYRYIWS-----FKNPDKNVVPGSAEKVKRN 407
Query: 260 GRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVII 301
+ + + ++ +S+ R+ + + I
Sbjct: 408 SAEYYQAYS--EASHW-------VSNARTPLYLNKKENQTYI 440
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta
helix, germin-like PROT protein binding; HET: NAG BMA
MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Length = 163
Score = 29.0 bits (64), Expect = 2.1
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 305 EAGDSIFVPSGWHHQVTN 322
+ +P HQV N
Sbjct: 93 FQNTTFSIPVNDPHQVWN 110
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid;
2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Length = 394
Score = 29.8 bits (66), Expect = 2.1
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 305 EAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKEIDD 359
A D + P+G H+ LE W +G +I + E +
Sbjct: 167 GANDFVLTPNGTWHEHGILESG--TECIWQDGLDIPLTNCLEANFYEVHPNDYQT 219
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich,
oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus
japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A*
1gqg_A*
Length = 350
Score = 29.4 bits (65), Expect = 2.2
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 291 WSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEH 325
W+ +T +GD VP H +
Sbjct: 85 WAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDP 119
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2
fold, unknown function, PSI-2, structure initiative;
HET: MSE; 2.30A {Rhodospirillum rubrum}
Length = 166
Score = 28.8 bits (64), Expect = 2.3
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 305 EAGDSIFVPSGWHHQVTN 322
D + +P HQ
Sbjct: 96 APYDLVTIPGWSWHQFRA 113
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ;
2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A*
3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A*
Length = 368
Score = 29.4 bits (65), Expect = 2.4
Identities = 12/50 (24%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 302 VEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLE 351
V GD + P H N WI+G +I V E
Sbjct: 144 VRMSRGDLLLTPGWCFHGHMNDTDQ---PMAWIDGLDIPFSQQMDVGFFE 190
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc
genomics, joint center for structural genomics, JCSG;
1.90A {Shewanella frigidimarina}
Length = 116
Score = 28.0 bits (62), Expect = 2.6
Identities = 10/25 (40%), Positives = 10/25 (40%)
Query: 305 EAGDSIFVPSGWHHQVTNLEHTISI 329
AGDS FVP H I I
Sbjct: 77 TAGDSFFVPPHVDHGAVCPTGGILI 101
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint
for structural genomics, JCSG; 1.65A {Thermotoga
maritima} SCOP: b.82.1.10
Length = 126
Score = 28.2 bits (63), Expect = 2.6
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 305 EAGDSIFVPSGWHHQVTN 322
E G IFV H N
Sbjct: 91 EEGFYIFVEPNEIHGFRN 108
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll
(cupin-2), structural genomics, protein structure
initiative; 2.31A {Bacteroides fragilis}
Length = 125
Score = 28.3 bits (63), Expect = 2.7
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 305 EAGDSIFVPSGWHHQVTN 322
+AGD + + Q++
Sbjct: 71 QAGDWLRIAPDGKRQISA 88
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics,
PSI-2, protein structure initiative; 2.30A {Haemophilus
influenzae} SCOP: c.66.1.46
Length = 201
Score = 28.7 bits (65), Expect = 3.0
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 11/64 (17%)
Query: 263 QWLLLAPGNEKY--------FKDSMGN-LISDMRSVDWSTLPRDTVIIVEQEAGDSIFVP 313
+L + F ++ IS + +W L + +I VE E + P
Sbjct: 115 DFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNW--LKPNALIYVETEKDKPLITP 172
Query: 314 SGWH 317
W
Sbjct: 173 ENWT 176
>1v70_A Probable antibiotics synthesis protein; structural genomics,
thermus thermophilus HB8, riken structu
genomics/proteomics initiative, RSGI; 1.30A {Thermus
thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Length = 105
Score = 27.5 bits (61), Expect = 3.4
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 305 EAGDSIFVPSGWHHQVTN 322
G + F P+G H V N
Sbjct: 72 APGMAAFAPAGAPHGVRN 89
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 28.6 bits (65), Expect = 3.9
Identities = 7/35 (20%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 28 CGDRFQIT--KEQLKAGEDVATCPTCSLIIKPSVI 60
C ++ + ++L++ + V C C+ +I+P+++
Sbjct: 127 CEKKYTVEDVIKKLESSD-VPLCDDCNSLIRPNIV 160
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide
binding protein, structural genomics; HET: MSE CMP;
1.79A {Methylobacillus flagellatus KT}
Length = 187
Score = 28.2 bits (63), Expect = 4.3
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 287 RSVDWSTLPRDTVIIVEQEAGDSIFV 312
+ PRD ++ E + GD + +
Sbjct: 60 SYMQCYAAPRDCQLLTEGDPGDYLLL 85
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase;
2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Length = 337
Score = 28.6 bits (63), Expect = 4.5
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 305 EAGDSIFVPSGWHHQVTNLEH 325
+GD +P+G H H
Sbjct: 90 ISGDYANIPAGTPHSYRMQSH 110
>2x7b_A N-acetyltransferase SSO0209; HET: COA; 1.95A {Sulfolobus
solfataricus}
Length = 168
Score = 28.1 bits (63), Expect = 4.7
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 13/71 (18%)
Query: 197 RDFKTEDIYRVPNV----FSSDWLNEYYSEHLEHKDDYRFV---------YMGPKETWTP 243
R+ + +DI ++ + ++ ++ EHL+ FV Y+ P+ W
Sbjct: 16 RNARMDDIDQIIKINRLTLPENYPYYFFVEHLKEYGLAFFVAIVDNSVVGYIMPRIEWGF 75
Query: 244 LHADVFHSYSW 254
+ S
Sbjct: 76 SNIKQLPSLVR 86
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved
hypothetical protein, PSI, PR structure initiative;
2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Length = 115
Score = 27.0 bits (60), Expect = 5.3
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 305 EAGDSIFVPSGWHHQVTNLE 324
G +I +P+G H + +E
Sbjct: 83 AEGQTIVMPAGIPHALYAVE 102
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase;
1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Length = 923
Score = 28.3 bits (62), Expect = 6.3
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 331 HNWINGTNIDHVYHEMVSHLEAVKKEIDDCKD 362
H+ I G ++D V+ EM++ E +
Sbjct: 373 HDSICGCSVDSVHREMMTRFEKAYEVGHYLAK 404
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic
resistance, breakage-reunion domain, struct genomics;
HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB:
3ifz_A*
Length = 470
Score = 27.8 bits (63), Expect = 7.3
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 23/64 (35%)
Query: 374 LQVSFGINFRQFFDMLKFI-CQKRLTSLKNGTTIRLYGNWILSLDH--------TMFDLR 424
LQ SFG N ML + R L IR Y +DH T + LR
Sbjct: 307 LQTSFGAN------MLAIVDGVPRTLRLDQ--LIRYY------VDHQLDVIVRRTTYRLR 352
Query: 425 KASD 428
KA++
Sbjct: 353 KANE 356
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.55A {Burkholderia
xenovorans}
Length = 134
Score = 26.9 bits (59), Expect = 7.4
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 291 WSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTN 322
W + + V EAG S F P G H+
Sbjct: 74 WVEFEYEDIGAVMLEAGGSAFQPPGVRHRELR 105
>2q30_A Uncharacterized protein; double-stranded beta-helix fold,
structural genomics, joint for structural genomics,
JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans
subsp}
Length = 110
Score = 26.7 bits (59), Expect = 7.9
Identities = 4/20 (20%), Positives = 6/20 (30%)
Query: 305 EAGDSIFVPSGWHHQVTNLE 324
G + P H V +
Sbjct: 79 PRGAVLVAPISTPHGVRAVT 98
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin,
tetramer, montreal- bacterial structural genomics
initiative, BSGI; 2.41A {Escherichia coli} SCOP:
b.82.1.23
Length = 354
Score = 27.8 bits (61), Expect = 8.1
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 3/47 (6%)
Query: 305 EAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLE 351
GD I P H N W++G ++ V E
Sbjct: 144 NEGDFILTPQWRWHDHGN---PGDEPVIWLDGLDLPLVNILGCGFAE 187
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding,
isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia
psychrerythraea} PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Length = 500
Score = 27.9 bits (63), Expect = 8.6
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 23/64 (35%)
Query: 374 LQVSFGINFRQFFDMLKFIC-QKRLTSLKNGTTIRLYGNWILSLDH--------TMFDLR 424
+QVSFG+N M+ Q ++ ++K + + + H T+F+LR
Sbjct: 296 MQVSFGLN------MVALTNGQPKIFNIKE--MLEAF------VLHRREVVTRRTIFELR 341
Query: 425 KASD 428
KA D
Sbjct: 342 KARD 345
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA
topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus
aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Length = 692
Score = 27.6 bits (62), Expect = 9.1
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 23/64 (35%)
Query: 374 LQVSFGINFRQFFDMLKFI-CQKRLTSLKNGTTIRLYGNWILSLDH--------TMFDLR 424
LQ SFG+N M+ + + +L +LK + Y L+H T ++LR
Sbjct: 528 LQTSFGVN------MIALVNGRPKLINLKE--ALVHY------LEHQKTVVRRRTQYNLR 573
Query: 425 KASD 428
KA D
Sbjct: 574 KAKD 577
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation,
transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Length = 323
Score = 27.4 bits (61), Expect = 10.0
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 26 CPCGDRFQIT--KEQLKAGEDVATCPTCSLIIKPSVI 60
C + ++ KE++ + C C ++KP ++
Sbjct: 165 ASCRHEYPLSWMKEKIFSEV-TPKCEDCQSLVKPDIV 200
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.435
Gapped
Lambda K H
0.267 0.0617 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,385,094
Number of extensions: 433740
Number of successful extensions: 1299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1245
Number of HSP's successfully gapped: 90
Length of query: 456
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 359
Effective length of database: 3,993,456
Effective search space: 1433650704
Effective search space used: 1433650704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)