RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12281
(456 letters)
>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 70
Score = 107 bits (269), Expect = 2e-29
Identities = 44/56 (78%), Positives = 51/56 (91%)
Query: 1 MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
M+V+HDE+EIEDF+YDED ETY+YPCPCGD F ITKE L+ GEDVATCP+CSLIIK
Sbjct: 1 MAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENGEDVATCPSCSLIIK 56
>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3,
DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 82
Score = 99.8 bits (249), Expect = 2e-26
Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 1 MSVYHDEIEIEDFEYDEDDETYYYPCPCGDRFQITKEQLKAGEDVATCPTCSLIIK 56
MS Y DEIEIED ++ +++ + YPCPCGDRFQI + + GE VA CP+CSL+I
Sbjct: 1 MSTY-DEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEKVAVCPSCSLMID 55
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 335
Score = 105 bits (261), Expect = 1e-25
Identities = 45/285 (15%), Positives = 96/285 (33%), Gaps = 42/285 (14%)
Query: 103 NFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSY-------- 154
+ +P +L + +L W + EYL + G+ + V + +++
Sbjct: 40 ELIENEEPVVLTDTNLVY-PALKW------DLEYLQENIGNGDFSVYSASTHKFLYYDEK 92
Query: 155 -------YFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRV 207
+ + M E+ Q D + E YL+ D I
Sbjct: 93 KMANFQNFKPRSNREEMKFHEFVEKLQ---DIQQRGGEERLYLQQTLN--DTVGRKIVMD 147
Query: 208 PNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLL 267
F+ +W+N+ + + + +G + TP H D + + I G K+ +L
Sbjct: 148 FLGFNWNWINKQQGKRGWGQLTSNLLLIGMEGNVTPAHYDEQQN--FFAQIKGYKRCILF 205
Query: 268 APGNEKYFKDSMGNLISDMRSV---------DWSTLPRDTVIIVEQEAGDSIFVPSGWHH 318
P + + D +S + GD +++P W H
Sbjct: 206 PPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWH 265
Query: 319 QVTNLEH---TISINHNWINGTNIDHVYHEMVSHL-EAVKKEIDD 359
+ +L + TI++N + + + + +H A+ + I+
Sbjct: 266 HIESLLNGGITITVNFWYKGAPTPKRIEYPLKAHQKVAIMRNIEK 310
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC
{Bacillus subtilis [TaxId: 1423]}
Length = 319
Score = 77.7 bits (190), Expect = 2e-16
Identities = 38/260 (14%), Positives = 69/260 (26%), Gaps = 31/260 (11%)
Query: 101 FNNFLSKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHE 160
+ KP + + V + S + K E + Y + + V +
Sbjct: 15 LEEYWPV-KPLVARGEVERFTSIPGF--EKVRTLENVLAIYNNPVMVVGDAVIEESEGIT 71
Query: 161 KTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYY 220
+ + W Y K DF I +V +
Sbjct: 72 DRFLVSPAEALEW---------------YEKGAALEFDFTDLFIPQVRRWI---EKLKAE 113
Query: 221 SEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYF----- 275
VY H D + + I G K W L N
Sbjct: 114 LRLPAGTSSKAIVYAAKNGGGFKAHFDAYTN--LIFQIQGEKTWKLAKNENVSNPMQHYD 171
Query: 276 KDSMGNLISDMRSVDWSTLPR---DTVIIVEQEAGDSIFVPSGWHHQVTNLEHTISINHN 332
D++S P+ IV G +++P G H + + T+++N
Sbjct: 172 LSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNIT 231
Query: 333 WINGTNIDHVYHEMVSHLEA 352
+ +D + + L +
Sbjct: 232 FGQPAWLDLMLAALRKKLIS 251
>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial
membrane TIMM44 (TIM44), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 182
Score = 29.6 bits (66), Expect = 0.51
Identities = 22/154 (14%), Positives = 44/154 (28%), Gaps = 19/154 (12%)
Query: 67 LSDSCNSNEQINVTTTALPQVDYNIDPS--------HIYPYCFNNFLSKN----KPFILK 114
L S +++ T + +VD D I P +S K + +
Sbjct: 17 LLGGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYE 76
Query: 115 SCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQ 174
+ ++ Q K ++ S V +A + +
Sbjct: 77 ATYSQLAH--PIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVLIITFQAQLVMVVRN 134
Query: 175 NK---IDGKLSETEPLYYLKDWHFTRDFKTEDIY 205
K ++G + + Y+ W RD + Y
Sbjct: 135 PKGEVVEGDPDKVLRMLYV--WALCRDQDELNPY 166
>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus
japonicus [TaxId: 34381]}
Length = 348
Score = 29.4 bits (65), Expect = 1.0
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 291 WSTLPRDTVIIVEQEAGDSIFVPSGWHHQVTNLEH 325
W+ +T +GD VP H +
Sbjct: 83 WAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDP 117
>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia
coli [TaxId: 562]}
Length = 308
Score = 29.0 bits (64), Expect = 1.1
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 305 EAGDSIFVPSGWHHQVTNLEHTI 327
A D VP+ + ++
Sbjct: 265 SAKDIFVVPTWHGVSFQTTQDSV 287
Score = 27.4 bits (60), Expect = 3.9
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 302 VEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEAVKKE 356
GD I P H N I W++G ++ V E +E
Sbjct: 95 TPMNEGDFILTPQWRWHDHGNPGDEPVI---WLDGLDLPLVNILGCGFAEDYPEE 146
>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays)
[TaxId: 4577]}
Length = 160
Score = 28.3 bits (62), Expect = 1.3
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 305 EAGDSIFVPSGWHHQVTN 322
+ +P HQV N
Sbjct: 93 FQNTTFSIPVNDPHQVWN 110
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus
subtilis [TaxId: 1423]}
Length = 330
Score = 28.7 bits (63), Expect = 1.5
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 305 EAGDSIFVPSGWHHQVTNLEH 325
GD + VP+ H H
Sbjct: 258 NPGDFLHVPANTVHSYRLDSH 278
Score = 28.0 bits (61), Expect = 2.3
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 305 EAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHEMVSHLEA 352
+GD +P+G H H + + N+ H+Y + + +
Sbjct: 86 ISGDYANIPAGTPHSYRMQSHRTRLVS-YTMKGNVAHLYSVIGNPYDH 132
>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ
{Salmonella typhimurium [TaxId: 90371]}
Length = 128
Score = 27.2 bits (60), Expect = 1.9
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 306 AGDSIFVPSGWHHQVTNLEHT 326
AGD +F+P G +
Sbjct: 96 AGDVMFIPKGSSIEFGTPTSV 116
>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus
subtilis [TaxId: 1423]}
Length = 372
Score = 27.7 bits (61), Expect = 2.8
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 295 PRDTVIIVEQEAGDSIFVPSGWHHQVTN 322
+AGD +VP H V N
Sbjct: 289 SDGHARTFNYQAGDVGYVPFAMGHYVEN 316
Score = 26.5 bits (58), Expect = 8.4
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 305 EAGDSIFVPSGWHHQVTNLEH 325
GD + PSG H + LE
Sbjct: 120 GEGDLWYFPSGLPHSIQALEE 140
>d1jmja_ e.1.1.1 (A:) Heparin cofactor II (Hc-II, leuserpin 2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 420
Score = 27.9 bits (61), Expect = 3.0
Identities = 22/194 (11%), Positives = 54/194 (27%), Gaps = 12/194 (6%)
Query: 53 LIIKPSVIKSVMLMLSDSCNSN--EQI----NVTTTALPQVDYNIDPSH-IYPYCFNNFL 105
+ I P I + M M+S EQ+ + Y I H ++ +
Sbjct: 72 IFIAPVGISTAMGMISLGLKGETHEQVHSILHFKDFVNASSKYEITTIHNLFRKLTHRLF 131
Query: 106 SKNKPFILKSCVNEWNSSLHWVQNKQPNFEYLSNHYGDIEVPVANCNSYYFNAHEKTNMT 165
+N + L+S + + + ++ + + KTN
Sbjct: 132 RRNFGYTLRSVNDLYIQ-----KQFPILLDFKTKVREYYFAEAQIADFSDPAFISKTNNH 186
Query: 166 LKEYTIYWQNKIDGKLSETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLE 225
+ + T + + L +F + + + + + +
Sbjct: 187 IMKLTKGLIKDALENIDPATQMMILNCIYFKGSWVNKFPVEMTHNHNFRLNEREVVKVSM 246
Query: 226 HKDDYRFVYMGPKE 239
+ F+ +E
Sbjct: 247 MQTKGNFLAANDQE 260
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus
influenzae [TaxId: 727]}
Length = 183
Score = 27.1 bits (59), Expect = 3.2
Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 3/99 (3%)
Query: 219 YYSEHLEHKDDYRFVYMGPKETWTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDS 278
+ + + K + S + + + + + + +
Sbjct: 71 FLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDV-VFLDPPFHFNL 129
Query: 279 MGNLISDMRSVDWSTLPRDTVIIVEQEAGDSIFVPSGWH 317
IS + +W L + +I VE E + P W
Sbjct: 130 AEQAISLLCENNW--LKPNALIYVETEKDKPLITPENWT 166
>g1o7d.1 a.8.3.1 (B:385-422,C:431-487) Lysosomal alpha-mannosidase
{Cow (Bos taurus) [TaxId: 9913]}
Length = 95
Score = 26.1 bits (57), Expect = 3.2
Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 306 AGDSIFVPSGWHHQVTNLEHTISIN--HNWINGTNIDHVYHEMVSHLEAVKKEID 358
+ + +G L +++ H+ ++GT+ HV ++ L + +
Sbjct: 27 VCNQLEALAGPAGDSAPLNEAMAVLQHHDAVSGTSRQHVANDYARQLSEGWRPCE 81
>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione
reductase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 27.1 bits (59), Expect = 3.5
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 154 YYFNAHEKTNMTLKEYTIYWQNKIDGKLSETEPLYYLKDWHF 195
F + K W ++ + + EP+ WHF
Sbjct: 188 ISFAPEIASEEERKGMVAAWSQRLQ-TIWKEEPIPCTAHWHF 228
>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase
{Pseudaminobacter salicylatoxidans [TaxId: 93369]}
Length = 351
Score = 27.4 bits (60), Expect = 3.6
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 305 EAGDSIFVPSGWHHQVTNLEHTI 327
E GD VPS +
Sbjct: 306 EKGDMFVVPSWVPWSLQAETQFD 328
>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase
{Silicibacter pomeroyi [TaxId: 89184]}
Length = 355
Score = 27.3 bits (60), Expect = 3.6
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 305 EAGDSIFVPSGWHHQVTNLEHT 326
D VP+ H+ N +
Sbjct: 299 SEHDIFCVPAWTWHEHCNTQER 320
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV
integrase {Human immunodeficiency virus type 1 [TaxId:
11676]}
Length = 46
Score = 24.6 bits (54), Expect = 3.6
Identities = 8/24 (33%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 30 DRFQITKEQLKAGEDVATCPTCSL 53
F + A E VA+C C L
Sbjct: 24 SDFNLPPVV--AKEIVASCDKCQL 45
>d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 111
Score = 26.1 bits (57), Expect = 4.1
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 317 HHQVTNLEHTISIN--HNWINGTNIDHVYHEMVSHLEAVKKE 356
++ +S+ H+ I GT HV + ++ K
Sbjct: 44 EERLEQARRELSLFQHHDGITGTAKTHVVVDYEQRMQEALKA 85
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase
{Penicillium funiculosum [TaxId: 28572]}
Length = 318
Score = 26.9 bits (59), Expect = 4.6
Identities = 6/16 (37%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
Query: 82 TALPQVDYNIDPSHIY 97
TALP +N++P+ +
Sbjct: 1 TALPA--FNVNPNSVS 14
>d2go8a1 d.58.4.5 (A:3-110) Hypothetical protein YqjZ {Bacillus
subtilis [TaxId: 1423]}
Length = 108
Score = 25.9 bits (57), Expect = 4.6
Identities = 5/42 (11%), Positives = 14/42 (33%)
Query: 337 TNIDHVYHEMVSHLEAVKKEIDDCKDMDDWTSHCQLMLQVSF 378
+ D Y E + ++ + ++ + VS+
Sbjct: 21 SENDTGYGETAERMVSLAADQPGFLGVESVREADGRGITVSY 62
>d1knva_ c.52.1.7 (A:) Restriction endonuclease Bse634I {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 290
Score = 26.9 bits (59), Expect = 5.7
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 175 NKIDGKLSETEPLYYLKDWHFTRDFKTED--IYRVPNVFSSDWLNEYYSEHLEHKDDYR 231
+ G E + ++ W++ + D I ++PNV + D+ + +E E
Sbjct: 69 SNTRGTW--FEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLE 125
>d1e4ia_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus polymyxa [TaxId:
1406]}
Length = 447
Score = 26.3 bits (57), Expect = 7.9
Identities = 32/240 (13%), Positives = 68/240 (28%), Gaps = 16/240 (6%)
Query: 125 HWVQNKQPNFE-YLSNHYGDIEVPVANCNSYYFNAHEKTNMTLKEYTIYWQNKIDGKLS- 182
HW+ +P +LSN G + N + H + + G++
Sbjct: 159 HWLTFNEPWCIAFLSNMLGVHAPGLTNLQTAIDVGHHLLVAHGLSVRRFRELGTSGQIGI 218
Query: 183 --ETEPLYYLKDWHFTRDFKTEDIYRVPNVFSSDWLNEYYSEHLEHKDDYRFVYMGPKET 240
+ I + F Y + L + + ++
Sbjct: 219 APNVSWAVPYSTSEEDKAACARTISLHSDWFLQPIYQGSYPQFLVDWFAEQGATVPIQDG 278
Query: 241 WTPLHADVFHSYSWSVNICGRKQWLLLAPGNEKYFKDSMGNLISDMRSVDWSTLPRDTVI 300
+ + + ++ A + + MG ++D+ S + +
Sbjct: 279 DMDIIGEPIDMIGINYYSMSVNRFNPEAGFLQSEEIN-MGLPVTDIGWPVESRGLYEVLH 337
Query: 301 IVEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNIDHVYHE-MVSHLEAVKKEIDD 359
+++ I++ E+ IN +NG D M HL V + I D
Sbjct: 338 YLQKYGNIDIYIT----------ENGACINDEVVNGKVQDDRRISYMQQHLVQVHRTIHD 387
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV
integrase {Human immunodeficiency virus type 2 [TaxId:
11709]}
Length = 46
Score = 23.8 bits (52), Expect = 7.9
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 30 DRFQITKEQLKAGEDVATCPTC 51
+F I A + V +C C
Sbjct: 24 HKFGIPNLV--ARQIVNSCAQC 43
>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli
[TaxId: 562]}
Length = 253
Score = 26.3 bits (57), Expect = 8.2
Identities = 8/87 (9%), Positives = 21/87 (24%), Gaps = 4/87 (4%)
Query: 302 VEQEAGDSIFVPSGWHHQVTNLEHTISINHNWINGTNI---DHVYHEMVSHLEAVKKEID 358
G ++ P G N + S + + + + +++
Sbjct: 93 FALSEGGYLYCPPGSLMTFVNAQAEDSQIF-LYKRRYVPVEGYAPWLVSGNASELERIHY 151
Query: 359 DCKDMDDWTSHCQLMLQVSFGINFRQF 385
+ D L ++ F
Sbjct: 152 EGMDDVILLDFLPKELGFDMNMHILSF 178
>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 245
Score = 26.2 bits (57), Expect = 9.1
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 302 VEQEAGDSIFVPSGWHHQVTNL 323
AGD I++ + L
Sbjct: 206 YPVTAGDIIWMGAHCPQWYGAL 227
>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus
faecalis [TaxId: 1351]}
Length = 250
Score = 25.8 bits (56), Expect = 9.5
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 302 VEQEAGDSIFVPSGWHHQVTNL 323
E GD IF+ + +
Sbjct: 209 YPVEKGDYIFMSAYVPQAAYAV 230
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.435
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,920,230
Number of extensions: 93789
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 57
Length of query: 456
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 368
Effective length of database: 1,199,356
Effective search space: 441363008
Effective search space used: 441363008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)