BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12282
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LXT|A Chain A, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1LXT|B Chain B, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1C47|A Chain A, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C47|B Chain B, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C4G|A Chain A, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
pdb|1C4G|B Chain B, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
Length = 561
Score = 340 bits (873), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 165/309 (53%), Positives = 208/309 (67%), Gaps = 41/309 (13%)
Query: 1 MVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFE 60
M+LGK FFVNPSDS+AV+AA++ SIPYF++TGV+G+ARSMPT A+DRVA A L+E
Sbjct: 294 MILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYE 353
Query: 61 VPTGWKYFGNLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGKPVEEILK 120
PTGWK+FGNLMDA +LSLCGEESFGTGSDHIREKDG+WAVLAWLS++ + VE+ILK
Sbjct: 354 TPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILK 413
Query: 121 SHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSFTVEAGDNF 180
HW ++GRN+FTRYDYE A +MM +LE + F G SA + +TVE DNF
Sbjct: 414 DHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNF 473
Query: 181 EYTDPIDGSVAKKQKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPIDGSVAKKQGVRVL 240
EY DP+DGSV +K QG+R++
Sbjct: 474 EYHDPVDGSV-----------------------------------------SKNQGLRLI 492
Query: 241 FTDGSRLIYRLSGTGSSGATVRLYVESYVPATGDIEADAQVALKPLVQVALELSKLPQFT 300
F DGSR+I+RLSGTGS+GAT+RLY++SY I D QV L PL+ +AL++S+L + T
Sbjct: 493 FADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERT 552
Query: 301 GRDAPTVIT 309
GR APTVIT
Sbjct: 553 GRTAPTVIT 561
>pdb|1JDY|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1JDY|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|A Chain A, Rabbit Muscle Phosphoglucomutase
pdb|1VKL|B Chain B, Rabbit Muscle Phosphoglucomutase
pdb|3PMG|A Chain A, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
pdb|3PMG|B Chain B, Structure Of Rabbit Muscle Phosphoglucomutase At 2.4
Angstroms Resolution. Use Of Freezing Point Depressant
And Reduced Temperature To Enhance Diffractivity
Length = 561
Score = 340 bits (872), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 165/309 (53%), Positives = 208/309 (67%), Gaps = 41/309 (13%)
Query: 1 MVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFE 60
M+LGK FFVNPSDS+AV+AA++ SIPYF++TGV+G+ARSMPT A+DRVA A L+E
Sbjct: 294 MILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYE 353
Query: 61 VPTGWKYFGNLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGKPVEEILK 120
PTGWK+FGNLMDA +LSLCGEESFGTGSDHIREKDG+WAVLAWLS++ + VE+ILK
Sbjct: 354 TPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILK 413
Query: 121 SHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSFTVEAGDNF 180
HW ++GRN+FTRYDYE A +MM +LE + F G SA + +TVE DNF
Sbjct: 414 DHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNF 473
Query: 181 EYTDPIDGSVAKKQKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPIDGSVAKKQGVRVL 240
EY DP+DGSV +K QG+R++
Sbjct: 474 EYHDPVDGSV-----------------------------------------SKNQGLRLI 492
Query: 241 FTDGSRLIYRLSGTGSSGATVRLYVESYVPATGDIEADAQVALKPLVQVALELSKLPQFT 300
F DGSR+I+RLSGTGS+GAT+RLY++SY I D QV L PL+ +AL++S+L + T
Sbjct: 493 FADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERT 552
Query: 301 GRDAPTVIT 309
GR APTVIT
Sbjct: 553 GRTAPTVIT 561
>pdb|1KFI|A Chain A, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFI|B Chain B, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFQ|A Chain A, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
pdb|1KFQ|B Chain B, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
Length = 572
Score = 260 bits (664), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 144/315 (45%), Positives = 190/315 (60%), Gaps = 63/315 (20%)
Query: 1 MVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFE 60
M+LG++ FFV PSDSLAV+AA+ + I K G+ G ARSMPT A+D+VA N +LFE
Sbjct: 315 MILGRQ-FFVTPSDSLAVIAANANLI---FKNGLLGAARSMPTSGALDKVAAKNGIKLFE 370
Query: 61 VPTGWKYFGNLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGK------P 114
PTGWK+FGNLMDAG ++LCGEESFGTGS+HIREKDGIWAVLAWL+++ H K
Sbjct: 371 TPTGWKFFGNLMDAGLINLCGEESFGTGSNHIREKDGIWAVLAWLTILAHKNKNTDHFVT 430
Query: 115 VEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSFTV 174
VEEI+ +W+Q+GRNY++RYDYE +A N+MM+ L+ K F+ +G
Sbjct: 431 VEEIVTQYWQQFGRNYYSRYDYEQVDSAGANKMMEHLKTK-----FQYFEQLKQGNK--- 482
Query: 175 EAGDNFEYTDPIDGSVAKKQKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPIDGSVAKK 234
D ++Y DP+D SV+ K
Sbjct: 483 --ADIYDYVDPVDQSVS-----------------------------------------KN 499
Query: 235 QGVRVLFTDGSRLIYRLSGTGSSGATVRLYVESYVPATGDIEADAQVALKPLVQVALELS 294
QGVR +F DGSR+I+RLSGTGS GAT+R+Y E + E AL ++++ LE+S
Sbjct: 500 QGVRFVFGDGSRIIFRLSGTGSVGATIRIYFEQFEQQQIQHE--TATALANIIKLGLEIS 557
Query: 295 KLPQFTGRDAPTVIT 309
+ QFTGR+ PTVIT
Sbjct: 558 DIAQFTGRNEPTVIT 572
>pdb|2Z0F|A Chain A, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
pdb|2Z0F|B Chain B, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
Length = 524
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 15/166 (9%)
Query: 9 FVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYF 68
+NP+ LA HL + + V ++ T A +DRVA+A +E++E P G+K+F
Sbjct: 300 LMNPNHYLAAALHHLYTTRSWPGAKV---GKTAVTSALLDRVAQALGREVYETPVGFKHF 356
Query: 69 GNLMDAGRLSLCGEESFGT------GSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSH 122
+ G L GEES G G +KDGI L ++ G+ + + ++
Sbjct: 357 VAGLLEGWLGFAGEESAGASFLRFDGRPFSTDKDGILMGLLAAELMAKRGQAPDALYEAL 416
Query: 123 WKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAE 168
++ GR Y+ R D P + ++SA E TL+ E
Sbjct: 417 AEKLGRPYYARKDL------PVSPEAKARLARLSAKEVHPSTLAGE 456
>pdb|3NA5|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens.
pdb|3NA5|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens
Length = 570
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 14/170 (8%)
Query: 7 AFFVNPSDSLAVLAAHL-DSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGW 65
A +NP+ LAV +L P + K G +++ + A +DRV ++L EVP G+
Sbjct: 340 AGLMNPNHYLAVAINYLFQHRPLWGKDVAVG--KTLVSSAMIDRVVNDLGRKLVEVPVGF 397
Query: 66 KYFGNLMDAGRLSLCGEESFGT------GSDHIREKDGIWAVLAWLSVVEHTGKPVEEIL 119
K+F + + G GEES G G+ +KDGI L + TGK +E
Sbjct: 398 KWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHY 457
Query: 120 KSHWKQYGRNYFTRYDYENCSA--APCNQMMDELEKKVSAPEFKGVTLSA 167
++G + R SA A +++ E+ VSA G ++A
Sbjct: 458 NELAARFGAPSYNRLQASATSAQKAALSKLSPEM---VSASTLAGDPITA 504
>pdb|3OLP|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
pdb|3OLP|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
Length = 570
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 14/170 (8%)
Query: 7 AFFVNPSDSLAVLAAHL-DSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGW 65
A +NP+ LAV +L P + K G +++ + A +DRV ++L EVP G+
Sbjct: 340 AGLMNPNHYLAVAINYLFQHRPLWGKDVAVG--KTLVSSAMIDRVVNDLGRKLVEVPVGF 397
Query: 66 KYFGNLMDAGRLSLCGEESFGT------GSDHIREKDGIWAVLAWLSVVEHTGKPVEEIL 119
K+F + + G GEES G G+ +KDGI L + TGK +E
Sbjct: 398 KWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHY 457
Query: 120 KSHWKQYGRNYFTRYDYENCSA--APCNQMMDELEKKVSAPEFKGVTLSA 167
++G + R SA A +++ E+ VSA G ++A
Sbjct: 458 NELAARFGAPSYNRLQASATSAQKAALSKLSPEM---VSASTLAGDPITA 504
>pdb|2FUV|A Chain A, Phosphoglucomutase From Salmonella Typhimurium.
pdb|2FUV|B Chain B, Phosphoglucomutase From Salmonella Typhimurium
Length = 549
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 7 AFFVNPSDSLAVLAAHL-DSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGW 65
A NP+ LAV +L P + K G +++ + A +DRV ++L EVP G+
Sbjct: 319 AGLXNPNHYLAVAINYLFQHRPLWGKDVAVG--KTLVSSAXIDRVVNDLGRKLVEVPVGF 376
Query: 66 KYFGNLMDAGRLSLCGEESFGT------GSDHIREKDGIWAVLAWLSVVEHTGKPVEEIL 119
K+F + + G GEES G G+ +KDGI L + TGK +E
Sbjct: 377 KWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIXCLLAAEITAVTGKNPQEHY 436
Query: 120 KSHWKQYGRNYFTRYDYENCSA 141
++G + R SA
Sbjct: 437 NELAARFGAPSYNRLQASATSA 458
>pdb|1TUO|A Chain A, Crystal Structure Of Putative Phosphomannomutase From
Thermus Thermophilus Hb8
Length = 464
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 9 FVNPSDSLAVLAAHLDSIPYFKKTGVKGYA-RSMPTGAAVDRVAKANNKELFEVPTGWKY 67
F NP L LA Y + G +G A ++ +DR+ + + P G+K+
Sbjct: 264 FFNPHQVLTTLAL------YRFRKGHRGRAVKNFAVTWLLDRLGERLGFGVTTTPVGFKW 317
Query: 68 FGNLMDAGRLSLCGEESFGTG-SDHIREKDGIWAVLAWLSVVEHTGKPVEEILK 120
G + GEES G G +H+ E+DGI L L V TGK + E K
Sbjct: 318 IKEEFLKGDCFIGGEESGGVGYPEHLPERDGILTSLLLLESVAATGKDLAEQFK 371
>pdb|2QQ2|A Chain A, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|B Chain B, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|C Chain C, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|D Chain D, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|E Chain E, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|F Chain F, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|G Chain G, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|H Chain H, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|I Chain I, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|J Chain J, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|K Chain K, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|L Chain L, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
Length = 193
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 161 KGVTLSAEGR-SFTVEAGDNFEY---TDPIDGSVAKKQKVSAPEFKGVTLSAEGRSFTV 215
KG ++ GR +FT E DP+ S K+ + ++ F V+LS EGRS V
Sbjct: 101 KGCVITISGRMTFTSNKSMEIEVLVDADPVVDSSQKRYRAASAFFTYVSLSQEGRSLPV 159
>pdb|1DC9|A Chain A, Properties And Crystal Structure Of A Beta-Barrel Folding
Mutant, V60n Intestinal Fatty Acid Binding Protein
(Ifabp)
Length = 131
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 171 SFTVEAGDNFEYTDPIDGSVAKKQKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPI 227
++ V+ +N+E G K+K+ A + +T++ EG FTV+ NF D +
Sbjct: 5 TWKVDRNENYEKFMEKMGINVVKRKLGAHDNLKLTITQEGNKFTVKESSNFRNIDNV 61
>pdb|1IFC|A Chain A, Refinement Of The Structure Of Recombinant Rat Intestinal
Fatty Acid- Binding Apoprotein At 1.2 Angstroms
Resolution
Length = 132
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 171 SFTVEAGDNFEYTDPIDGSVAKKQKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPI 227
++ V+ +N+E G K+K+ A + +T++ EG FTV+ NF D +
Sbjct: 6 TWKVDRNENYEKFMEKMGINVVKRKLGAHDNLKLTITQEGNKFTVKESSNFRNIDVV 62
>pdb|1AEL|A Chain A, Nmr Structure Of Apo Intestinal Fatty Acid-Binding
Protein, 20 Structures
pdb|1ICM|A Chain A, Escherichia Coli-Derived Rat Intestinal Fatty Acid Binding
Protein With Bound Myristate At 1.5 A Resolution And I-
Fabparg106-->gln With Bound Oleate At 1.74 A Resolution
pdb|1IFB|A Chain A, Refined Apoprotein Structure Of Rat Intestinal Fatty Acid
Binding Protein Produced In Escherichia Coli
pdb|1URE|A Chain A, Nmr Structure Of Intestinal Fatty Acid-Binding Protein
Complexed With Palmitate, 20 Structures
pdb|2IFB|A Chain A, Crystal Structure Of Rat Intestinal Fatty-acid-binding
Protein. Refinement And Analysis Of The Escherichia
Coli- Drived Protein With Bound Palmitate
pdb|3AKN|A Chain A, X-Ray Structure Of Ifabp From Human And Rat With Bound
Fluorescent Fatty Acid Analogue
Length = 131
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 171 SFTVEAGDNFEYTDPIDGSVAKKQKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPI 227
++ V+ +N+E G K+K+ A + +T++ EG FTV+ NF D +
Sbjct: 5 TWKVDRNENYEKFMEKMGINVVKRKLGAHDNLKLTITQEGNKFTVKESSNFRNIDVV 61
>pdb|1ICN|A Chain A, Escherichia Coli-Derived Rat Intestinal Fatty Acid Binding
Protein With Bound Myristate At 1.5 A Resolution And I-
Fabparg106-->gln With Bound Oleate At 1.74 A Resolution
Length = 131
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 171 SFTVEAGDNFEYTDPIDGSVAKKQKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPI 227
++ V+ +N+E G K+K+ A + +T++ EG FTV+ NF D +
Sbjct: 5 TWKVDRNENYEKFMEKMGINVVKRKLGAHDNLKLTITQEGNKFTVKESSNFRNIDVV 61
>pdb|7FAB|L Chain L, Crystal Structure Of Human Immunoglobulin Fragment Fab New
Refined At 2.0 Angstroms Resolution
Length = 208
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 196 VSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPIDGSVAKKQGVRVLFTDGSRLIYRLSGTG 255
VS + VT+S G S + AG N ++ + G+ K ++F + +R SGT
Sbjct: 10 VSGAPGQRVTISCTGSSSNIGAGHNVKWYQQLPGTAPK----LLIFHNNARFSVSKSGTS 65
Query: 256 SSGATVRLYVE 266
++ A L E
Sbjct: 66 ATLAITGLQAE 76
>pdb|4HJH|A Chain A, Iodide Sad Phased Crystal Structure Of A
Phosphoglucomutase From Brucella Melitensis Complexed
With Glucose-6-Phosphate
pdb|4HJH|B Chain B, Iodide Sad Phased Crystal Structure Of A
Phosphoglucomutase From Brucella Melitensis Complexed
With Glucose-6-Phosphate
Length = 481
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 201 FKGVTLSAEGRSFTVEAGDNFEYTDPIDGSVAKKQGVRVLFTDGSRLIYRLSGTGSSGAT 260
F + A+ R+ AGD + IDG V++ F G+ + YR SG
Sbjct: 398 FLALLEDADKRASLFPAGDAIVRVETIDG-------VKLFFQSGNAVHYRASGNAPE--- 447
Query: 261 VRLYVES 267
+R YVES
Sbjct: 448 LRCYVES 454
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,864,596
Number of Sequences: 62578
Number of extensions: 437422
Number of successful extensions: 1123
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1097
Number of HSP's gapped (non-prelim): 27
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)