RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12282
(309 letters)
>gnl|CDD|100087 cd03085, PGM1, Phosphoglucomutase 1 (PGM1) catalyzes the
bidirectional interconversion of glucose-1-phosphate
(G-1-P) and glucose-6-phosphate (G-6-P) via a glucose
1,6-diphosphate intermediate, an important metabolic
step in prokaryotes and eukaryotes. In one direction,
G-1-P produced from sucrose catabolism is converted to
G-6-P, the first intermediate in glycolysis. In the
other direction, conversion of G-6-P to G-1-P generates
a substrate for synthesis of UDP-glucose which is
required for synthesis of a variety of cellular
constituents including cell wall polymers and
glycoproteins. The PGM1 family also includes a
non-enzymatic PGM-related protein (PGM-RP) thought to
play a structural role in eukaryotes, as well as
pp63/parafusin, a phosphoglycoprotein that plays an
important role in calcium-regulated exocytosis in
ciliated protozoans. PGM1 belongs to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Other members of this superfamily include
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 548
Score = 479 bits (1235), Expect = e-169
Identities = 168/309 (54%), Positives = 205/309 (66%), Gaps = 45/309 (14%)
Query: 1 MVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFE 60
M+LGK FFV PSDS+AV+AA+ IPYF K G+KG ARSMPT A+DRVAK LFE
Sbjct: 285 MILGK-GFFVTPSDSVAVIAANAKLIPYFYKGGLKGVARSMPTSGALDRVAKKLGIPLFE 343
Query: 61 VPTGWKYFGNLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGKPVEEILK 120
PTGWK+FGNLMDAG+LSLCGEESFGTGSDHIREKDG+WAVLAWLS++ H VE+I+K
Sbjct: 344 TPTGWKFFGNLMDAGKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILAHRNVSVEDIVK 403
Query: 121 SHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSFTVEAGDNF 180
HW++YGRN++TRYDYE + N+MMD L VS G +
Sbjct: 404 EHWQKYGRNFYTRYDYEEVDSEAANKMMDHLRALVSDLPGVGKSGDKG------------ 451
Query: 181 EYTDPIDGSVAKKQKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPIDGSVAKKQGVRVL 240
+ V D+F YTDP+DGSV+KKQG+R++
Sbjct: 452 --------------------------------YKVAKADDFSYTDPVDGSVSKKQGLRII 479
Query: 241 FTDGSRLIYRLSGTGSSGATVRLYVESYVPATGDIEADAQVALKPLVQVALELSKLPQFT 300
F DGSR+I+RLSGTGSSGAT+RLY+ESY DAQVALKPL+++AL+LSKL +FT
Sbjct: 480 FEDGSRIIFRLSGTGSSGATIRLYIESYEKDPSKYGLDAQVALKPLIEIALKLSKLKEFT 539
Query: 301 GRDAPTVIT 309
GR+ PTVIT
Sbjct: 540 GREEPTVIT 548
>gnl|CDD|177942 PLN02307, PLN02307, phosphoglucomutase.
Length = 579
Score = 412 bits (1062), Expect = e-142
Identities = 168/319 (52%), Positives = 208/319 (65%), Gaps = 58/319 (18%)
Query: 1 MVLGKKAFFVNPSDSLAVLAAH-LDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELF 59
M+LGK+ FFV PSDS+A++AA+ ++IPYF G+KG ARSMPT AA+D VAK N F
Sbjct: 309 MILGKR-FFVTPSDSVAIIAANAQEAIPYFSG-GLKGVARSMPTSAALDVVAKKLNLPFF 366
Query: 60 EVPTGWKYFGNLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGK------ 113
EVPTGWK+FGNLMDAG+LS+CGEESFGTGSDHIREKDGIWAVLAWLS++ H K
Sbjct: 367 EVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSILAHKNKDVLPGG 426
Query: 114 ---PVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGR 170
VE+I++ HW YGRN+++RYDYEN + N+MMD L V+ S +G
Sbjct: 427 KLVTVEDIVREHWATYGRNFYSRYDYENVDSEAANKMMDHLRDLVNK--------SKKGI 478
Query: 171 SFTVEAGDNFEYTDPIDGSVAKKQKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPIDGS 230
+ V +T+ D+FEYTDP+DGS
Sbjct: 479 KYGV--------------------------------------YTLAFADDFEYTDPVDGS 500
Query: 231 VAKKQGVRVLFTDGSRLIYRLSGTGSSGATVRLYVESYVPATGDIEADAQVALKPLVQVA 290
V+ KQG+R LFTDGSR+I+RLSGTGS+GAT+RLY+E Y DAQ ALKPL+ VA
Sbjct: 501 VSSKQGIRFLFTDGSRIIFRLSGTGSAGATIRLYIEQYEKDPSKHGRDAQEALKPLIDVA 560
Query: 291 LELSKLPQFTGRDAPTVIT 309
L+LSKL +FTGR PTVIT
Sbjct: 561 LKLSKLKEFTGRSKPTVIT 579
>gnl|CDD|236050 PRK07564, PRK07564, phosphoglucomutase; Validated.
Length = 543
Score = 233 bits (598), Expect = 6e-73
Identities = 79/299 (26%), Positives = 121/299 (40%), Gaps = 74/299 (24%)
Query: 1 MVLGKKAFFVNPSDSLAVLAAHLDS-IP-YFKKTGVKGYARSMPTGAAVDRVAKANNKEL 58
++ +NP+ LAV A+L P + GV +++ + A +DRVA ++L
Sbjct: 309 GIVTP-GGLMNPNHYLAVAIAYLFHHRPGWRAGAGV---GKTLVSSAMIDRVAAKLGRKL 364
Query: 59 FEVPTGWKYFGNLMDAGRLSLCGEESFGT------GSDHIREKDGIWAVLAWLSVVEHTG 112
+EVP G+K+F N +D G L GEES G GS +KDG+ AVL ++ TG
Sbjct: 365 YEVPVGFKWFVNGLDDGSLGFGGEESAGASFLRRDGSVWTTDKDGLIAVLLAAEILAVTG 424
Query: 113 KPVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSF 172
K EI + W ++GR Y++R+D +K LS E
Sbjct: 425 KSPSEIYRELWARFGRPYYSRHDAPA----------TPEQKAALR------KLSPELVGA 468
Query: 173 TVEAGDNFEYTDPIDGSVAKKQKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPIDGSVA 232
T AG DPID S+ + G+ A
Sbjct: 469 TELAG------DPIDASLTEAP----------------------------------GNGA 488
Query: 233 KKQGVRVLFTDGSRLIYRLSGTGSSGATVRLYVESYVPAT--GDIEADAQVALKPLVQV 289
G++V+ +G R SGT T ++Y ES+ I+ +AQ + L+
Sbjct: 489 AIGGLKVVTENG-WFAARPSGT---ETTYKIYAESFEGDEHLHQIQKEAQEIVADLIAA 543
>gnl|CDD|223111 COG0033, Pgm, Phosphoglucomutase [Carbohydrate transport and
metabolism].
Length = 524
Score = 218 bits (557), Expect = 3e-67
Identities = 76/300 (25%), Positives = 116/300 (38%), Gaps = 67/300 (22%)
Query: 1 MVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFE 60
++ A +NP+ SLAV +L + G+ +++ + AA+DRV + L+E
Sbjct: 287 GIVTPGAGLMNPNHSLAVAIEYLFLHRPYWG-GIVAVGKTLVSSAAIDRVVAKLGRGLYE 345
Query: 61 VPTGWKYFGNLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVV-----EHTGKPV 115
VP G+K+F + +DAG GEES G+ +REK G+WA +++ E T
Sbjct: 346 VPVGFKWFVDGLDAGSFGFGGEES--AGASFLREKGGVWATDKDGNILALLAAEITAV-T 402
Query: 116 EEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSFTVE 175
+I + H+ + GRN+ R DYE A N L K LS E S T
Sbjct: 403 GKIPQEHYAELGRNFG-RPDYERVDAEAANAQKARLRK-----------LSPEMVSATTL 450
Query: 176 AGDNFEYTDPIDGSVAKKQKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPIDGSVAKKQ 235
AGD Y P G+ A
Sbjct: 451 AGD----------------------------------------PITAYLTPAPGNGAAIG 470
Query: 236 GVRVLFTDGSRLIYRLSGTGSSGATVRLYVESYVPATGDIEADAQVALKPLVQVALELSK 295
G++V + R SGT AT ++Y ES+ Q +V L+++
Sbjct: 471 GLKVTT-ENGWFAARPSGT---EATYKIYAESFEGDEHLK--QIQKEAAEIVSEVLKIAG 524
>gnl|CDD|217265 pfam02880, PGM_PMM_III, Phosphoglucomutase/phosphomannomutase,
alpha/beta/alpha domain III.
Length = 112
Score = 110 bits (277), Expect = 3e-30
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 12 PSDSLAVLAAHLDSIPYFKKTGVKGY-ARSMPTGAAVDRVAKANNKELFEVPTGWKYFGN 70
D + L A Y + +++ + +DRVA+ +L G KY
Sbjct: 1 DGDQILALLAR-----YLLELKGGAGVVKTVMSSLGLDRVAEKLGGKLVRTKVGDKYVKE 55
Query: 71 LMDAGRLSLCGEESFGTGS--DHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQY 126
M G L GEES G D KDGI A L L ++ TGK + E+L+ ++Y
Sbjct: 56 KMREGGAVLGGEES-GHIIFLDFATTKDGILAALLVLEILAETGKSLSELLEELPERY 112
>gnl|CDD|100086 cd03084, phosphohexomutase, The alpha-D-phosphohexomutase
superfamily includes several related enzymes that
catalyze a reversible intramolecular phosphoryl transfer
on their sugar substrates. Members of this family
include the phosphoglucomutases (PGM1 and PGM2),
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). These
enzymes play important and diverse roles in carbohydrate
metabolism in organisms from bacteria to humans. Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 355
Score = 93.2 bits (232), Expect = 1e-21
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 1 MVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYA-RSMPTGAAVDRVAKANNKELF 59
+V+ + F++ + LA+LA L F +G +++ + A+D+VAK ++
Sbjct: 189 IVVDENGGFLDGDELLALLAVEL-----FLTFNPRGGVVKTVVSSGALDKVAKKLGIKVI 243
Query: 60 EVPTGWKYFGNLMDAGRLSLCGEESFGTGS-DHIREKDGIWAVLAWLSVVEHTGKPVEEI 118
TG+K+ G M G + L GEES G + +DGI A L L ++ + GK + E+
Sbjct: 244 RTKTGFKWVGEAMQEGDVVLGGEESGGVIFPEFHPGRDGISAALLLLEILANLGKSLSEL 303
Query: 119 LKSHWKQYGRNYFTRYDYE 137
+ R Y+ R
Sbjct: 304 F----SELPRYYYIRLKVR 318
>gnl|CDD|100093 cd05800, PGM_like2, This PGM-like (phosphoglucomutase-like) protein
of unknown function belongs to the
alpha-D-phosphohexomutase superfamily and is found in
both archaea and bacteria. The
alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four structural domains (subdomains)
with a centrally located active site formed by four
loops, one from each subdomain. All four subdomains are
included in this alignment model.
Length = 461
Score = 89.5 bits (223), Expect = 5e-20
Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 7/130 (5%)
Query: 9 FVNPSDSLAVLAAHLDSIPYFKKTGVKG-YARSMPTGAAVDRVAKANNKELFEVPTGWKY 67
F++P+ LA+L +L + G++G +++ T +DR+A+ + ++E P G+KY
Sbjct: 257 FLDPNQILALLLDYL-----LENKGLRGPVVKTVSTTHLIDRIAEKHGLPVYETPVGFKY 311
Query: 68 FGNLMDAGRLSLCGEESFGTG-SDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQY 126
M + + GEES G G HI E+DGI A L L V TGKP+ E++ ++Y
Sbjct: 312 IAEKMLEEDVLIGGEESGGLGIRGHIPERDGILAGLLLLEAVAKTGKPLSELVAELEEEY 371
Query: 127 GRNYFTRYDY 136
G +Y+ R D
Sbjct: 372 GPSYYDRIDL 381
>gnl|CDD|224034 COG1109, {ManB}, Phosphomannomutase [Carbohydrate transport and
metabolism].
Length = 464
Score = 56.2 bits (136), Expect = 6e-09
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 7/166 (4%)
Query: 9 FVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYF 68
FV+ LA+LA +L +K + ++ + A++++AK ++ G KY
Sbjct: 262 FVDGDQILALLAKYLL-----EKGKLPTVVTTVMSSLALEKIAKKLGGKVVRTKVGDKYI 316
Query: 69 GNLMDAGRLSLCGEESFGTG-SDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYG 127
M GEES DH+R DG+ A L L ++ +GK + E+L +Y
Sbjct: 317 AEKMRENGAVFGGEESGHIIFPDHVRTGDGLLAALLVLELLAESGKSLSELLAELLPKYP 376
Query: 128 RNYFTRYDYENCS-AAPCNQMMDELEKKVSAPEFKGVTLSAEGRSF 172
++ + A ++++EL + GV + E
Sbjct: 377 QSVEINVRVTDEGKAEVLEKLLEELREAKKVDTIDGVKVELEDGGR 422
>gnl|CDD|100094 cd05801, PGM_like3, This bacterial PGM-like
(phosphoglucomutase-like) protein of unknown function
belongs to the alpha-D-phosphohexomutase superfamily.
The alpha-D-phosphohexomutases include several related
enzymes that catalyze a reversible intramolecular
phosphoryl transfer on their sugar substrates. Other
members of this superfamily include phosphoglucosamine
mutase (PNGM), phosphoacetylglucosamine mutase (PAGM),
the bacterial phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 522
Score = 53.4 bits (129), Expect = 5e-08
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 10/102 (9%)
Query: 43 TGAAVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGT------GSDHIREKD 96
+ + +DRVA A ++L+EVP G+K+F + + G L GEES G G+ +KD
Sbjct: 334 SSSMIDRVAAALGRKLYEVPVGFKWFVDGLLDGSLGFGGEESAGASFLRRDGTVWTTDKD 393
Query: 97 GIWAVLAWLS--VVEHTGKPVEEILKSHWKQYGRNYFTRYDY 136
GI ++ L+ ++ TGK ++ + +++G Y+ R D
Sbjct: 394 GI--IMCLLAAEILAVTGKDPGQLYQELTERFGEPYYARIDA 433
>gnl|CDD|100092 cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and
PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2
is thought to be a phosphopentomutase that catalyzes the
conversion of the nucleoside breakdown products,
ribose-1-phosphate and deoxyribose-1-phosphate to the
corresponding 5-phosphopentoses. PGM2L1 is thought to
catalyze the 1,3-bisphosphoglycerate-dependent synthesis
of glucose 1,6-bisphosphate and other
aldose-bisphosphates that serve as cofactors for several
sugar phosphomutases and possibly also as regulators of
glycolytic enzymes. PGM2 and PGM2L1 belong to the
alpha-D-phosphohexomutase superfamily which includes
several related enzymes that catalyze a reversible
intramolecular phosphoryl transfer on their sugar
substrates. Other members of this superfamily include
phosphoglucosamine mutase (PNGM),
phosphoacetylglucosamine mutase (PAGM), the bacterial
phosphomannomutase ManB, the bacterial
phosphoglucosamine mutase GlmM, and the bifunctional
phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of
these enzymes has four domains with a centrally located
active site formed by four loops, one from each domain.
All four domains are included in this alignment model.
Length = 487
Score = 52.9 bits (128), Expect = 9e-08
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 43 TGAAVDRVAKANNKELFEVPTGWKYFGNLM-----DAGRLSLCGEESFG-TGSDHIREKD 96
+ + ++AK ++ E TG+K+ GN + + EES G +R+KD
Sbjct: 315 SSELLRKIAKKYGVKVEETLTGFKWIGNKIEELESGGKKFLFGFEESIGYLVGPFVRDKD 374
Query: 97 GIWAVLAWLSVVEH---TGKPVEEILKSHWKQYGRNYF 131
GI A + + GK + + L +++YG Y+
Sbjct: 375 GISAAALLAEMAAYLKAQGKTLLDRLDELYEKYG--YY 410
>gnl|CDD|188111 TIGR01132, pgm, phosphoglucomutase, alpha-D-glucose
phosphate-specific. This enzyme interconverts
alpha-D-glucose-1-P and alpha-D-glucose-6-P [Energy
metabolism, Sugars].
Length = 544
Score = 49.8 bits (119), Expect = 9e-07
Identities = 43/169 (25%), Positives = 67/169 (39%), Gaps = 21/169 (12%)
Query: 10 VNPSDSLAV----LAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGW 65
+NP+ LAV L H G +++ + A +DRV ++L EVP G+
Sbjct: 319 MNPNHYLAVAINYLFQHRPQWG-----GDVAVGKTLVSSAMIDRVVADLGRQLVEVPVGF 373
Query: 66 KYFGNLMDAGRLSLCGEESFGT------GSDHIREKDGIWAVLAWLSVVEHTGKPVEEIL 119
K+F + + G GEES G G+ +KDGI L + TGK ++
Sbjct: 374 KWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQQHY 433
Query: 120 KSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAE 168
++G + R AP KK+S TL+ +
Sbjct: 434 NELAAKFGAPSYNRIQ------APATSAQKARLKKLSPEMVSATTLAGD 476
>gnl|CDD|215905 pfam00408, PGM_PMM_IV, Phosphoglucomutase/phosphomannomutase,
C-terminal domain.
Length = 71
Score = 43.4 bits (103), Expect = 4e-06
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 232 AKKQGVRVLFTDGSRLIYRLSGTGSSGATVRLYVESY 268
A + +++LF DG R+ R SGT +R+YVE+
Sbjct: 21 AFAEALKILFEDGRRVTVRPSGTEPV---LRVYVEAD 54
>gnl|CDD|240294 PTZ00150, PTZ00150, phosphoglucomutase-2-like protein; Provisional.
Length = 584
Score = 38.1 bits (89), Expect = 0.005
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 60 EVPTGWKYFGN----LMDAG--RLSLCGEESFGTG-SDHIREKDGIWAVLAWLSV---VE 109
E TG+K+ GN L EE+ G +R+KDG+ A + +
Sbjct: 374 ETLTGFKWIGNKAIELNAENGLTTLFAYEEAIGFMLGTRVRDKDGVTAAAVVAEMALYLY 433
Query: 110 HTGKPVEEILKSHWKQYG----RN-YFTRYD 135
GK + E L+S +KQYG N Y+ YD
Sbjct: 434 ERGKTLVEHLESLYKQYGYHFTNNSYYICYD 464
>gnl|CDD|237669 PRK14315, glmM, phosphoglucosamine mutase; Provisional.
Length = 448
Score = 32.2 bits (74), Expect = 0.33
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 49 RVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGTG----SDHIREKDGIWAVLAW 104
R L G +Y M G +L GE+S G SD+ DG+ A L
Sbjct: 295 RFLADRGLTLERTAVGDRYVVEHMREGGFNLGGEQS---GHIVLSDYATTGDGLVAALQV 351
Query: 105 LSVVEHTGKPVEEILK 120
L+VV +G+P E+ +
Sbjct: 352 LAVVVRSGRPASEVCR 367
>gnl|CDD|214738 smart00595, MADF, subfamily of SANT domain.
Length = 89
Score = 29.6 bits (67), Expect = 0.43
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 103 AWLSVVEHTGKPVEEILKSHWKQYGRNYFTRY 134
AW + E G VEE K WK R+ + R
Sbjct: 29 AWEEIAEELGLSVEEC-KKRWKNL-RDRYRRE 58
>gnl|CDD|184621 PRK14324, glmM, phosphoglucosamine mutase; Provisional.
Length = 446
Score = 31.1 bits (71), Expect = 0.69
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 10/110 (9%)
Query: 16 LAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAG 75
L VLA +L K + A M A + + K + L G KY M
Sbjct: 264 LGVLAVYLKEKGALKSQAI--VATVMSNLALEEYLKKHGIE-LKRCNVGDKYVLECMKEN 320
Query: 76 RLSLCGEES----FGTGSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKS 121
++ GE+S F SD+ + DG+ + L +++ + K E L
Sbjct: 321 GINFGGEQSGHIIF---SDYAKTGDGLVSALQVSALMLESKKKASEALNP 367
>gnl|CDD|237573 PRK13963, PRK13963, unkown domain/putative metalloprotease fusion
protein; Provisional.
Length = 258
Score = 29.7 bits (67), Expect = 1.7
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 29/119 (24%)
Query: 193 KQKVSAPEFKGVTL-SAEGRSFTVEAGDNFEYTDPIDGSVAKKQGVRVLFTDGSRLIYRL 251
+ + + P ++L A+G++ TV+A Q +R+ F DG L++ L
Sbjct: 11 RAEAAQPASPRLSLFDAKGKARTVDA-----------------QALRIDFADGRSLMFDL 53
Query: 252 SGTGSSGATVRLYVESYVPATGDIEADAQVALKP----LVQVALELSKLPQF-TGRDAP 305
SG+ A + V D A +AL+P V + + P F DAP
Sbjct: 54 SGSSGDAAV------AIVAQHADPAMRAMLALRPEHYDSVTLRVGAEPAPDFVDDEDAP 106
>gnl|CDD|184683 PRK14450, PRK14450, acylphosphatase; Provisional.
Length = 91
Score = 27.5 bits (61), Expect = 2.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 31 KTGVKGYARSMPTGAAVDRVAKANNKELFE 60
+ G+ GYA+++ G V+ VA+ + L E
Sbjct: 27 RLGLCGYAKNLANGNEVEVVAEGDKDSLLE 56
>gnl|CDD|218228 pfam04720, DUF506, Protein of unknown function (DUF506). Family of
uncharacterized plant proteins.
Length = 218
Score = 27.8 bits (62), Expect = 5.8
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 211 RSFTVEAGDNFEYTDPIDGSVAKKQGVRVL 240
S V AG+ EY D +DG +KKQ VR++
Sbjct: 113 SSGKVPAGEY-EYIDVVDGGESKKQEVRLI 141
>gnl|CDD|238745 cd01468, trunk_domain, trunk domain. COPII-coated vesicles carry
proteins from the endoplasmic reticulum to the Golgi
complex. This vesicular transport can be reconstituted
by using three cytosolic components containing five
proteins: the small GTPase Sar1p, the Sec23p/24p
complex, and the Sec13p/Sec31p complex. This domain is
known as the trunk domain and has an alpha/beta vWA fold
and forms the dimer interface. Some members of this
family possess a partial MIDAS motif that is a
characteristic feature of most vWA domain proteins.
Length = 239
Score = 28.0 bits (63), Expect = 6.3
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 8 FFVNPSDSLAVLAAHLDSIP-YFKKTGVKGYARSMPTGAAV 47
F V S+ V+ L+ +P F R G A+
Sbjct: 84 FLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERC--LGPAL 122
>gnl|CDD|237972 PRK15483, PRK15483, type III restriction-modification system StyLTI
enzyme res; Provisional.
Length = 986
Score = 28.1 bits (63), Expect = 6.8
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 14/69 (20%)
Query: 147 MMDELEKKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPIDGSVAKKQKVSAPEFKGVTL 206
K V + K + L ++F + G+N D P F+G+T+
Sbjct: 286 EQANNVKIVDSVTAKKLILRRGKKTFELAVGENLADID--------------PGFEGLTI 331
Query: 207 SAEGRSFTV 215
G++ V
Sbjct: 332 EYAGKTSVV 340
>gnl|CDD|130522 TIGR01455, glmM, phosphoglucosamine mutase. This model describes
GlmM, phosphoglucosamine mutase, also designated in MrsA
and YhbF E. coli, UreC in Helicobacter pylori, and
femR315 or FemD in Staphlococcus aureus. It converts
glucosamine-6-phosphate to glucosamine-1-phosphate as
part of the pathway toward UDP-N-acetylglucosamine for
peptidoglycan and lipopolysaccharides [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan, Central intermediary metabolism, Amino
sugars].
Length = 443
Score = 28.1 bits (63), Expect = 7.4
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 58 LFEVPTGWKYFGNLMDAGRLSLCGEESFGTG----SDHIREKDGIWAVLAWLSVVEHTGK 113
L G +Y M +L GE+S G D+ DGI + L L++++ +G
Sbjct: 300 LIRTAVGDRYVLEEMRESGYNLGGEQS---GHIILLDYSTTGDGIVSALQVLTIMKKSGS 356
Query: 114 PVEEILKS 121
+ E+
Sbjct: 357 TLSELAAE 364
>gnl|CDD|213532 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase. Members of this protein family
are 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase, the IspD protein of the
deoxyxylulose pathway of IPP biosynthesis. In about
twenty percent of bacterial genomes, this protein occurs
as IspDF, a bifunctional fusion protein [Biosynthesis of
cofactors, prosthetic groups, and carriers, Other].
Length = 217
Score = 27.3 bits (61), Expect = 9.1
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 211 RSFTVEAGDNFEYTDPIDGSVAKKQGVRVLFTDGSRL 247
++ + FE TD D S +K G +V +G L
Sbjct: 166 KALARAKLEGFEITD--DASAVEKLGGKVQLVEGDAL 200
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.389
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,927,626
Number of extensions: 1529610
Number of successful extensions: 1452
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1426
Number of HSP's successfully gapped: 36
Length of query: 309
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 212
Effective length of database: 6,635,264
Effective search space: 1406675968
Effective search space used: 1406675968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)