RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12282
(309 letters)
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase,
phosphotransferase; HET: SEP; 2.40A {Oryctolagus
cuniculus} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1
PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A* 1c47_A*
Length = 561
Score = 341 bits (876), Expect = e-114
Identities = 165/309 (53%), Positives = 208/309 (67%), Gaps = 41/309 (13%)
Query: 1 MVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFE 60
M+LGK FFVNPSDS+AV+AA++ SIPYF++TGV+G+ARSMPT A+DRVA A L+E
Sbjct: 294 MILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYE 353
Query: 61 VPTGWKYFGNLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGKPVEEILK 120
PTGWK+FGNLMDA +LSLCGEESFGTGSDHIREKDG+WAVLAWLS++ + VE+ILK
Sbjct: 354 TPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILK 413
Query: 121 SHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSFTVEAGDNF 180
HW ++GRN+FTRYDYE A +MM +LE
Sbjct: 414 DHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEA--------------------------- 446
Query: 181 EYTDPIDGSVAKKQKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPIDGSVAKKQGVRVL 240
+ F G SA + +TVE DNFEY DP+DGSV+K QG+R++
Sbjct: 447 --------------LMFDRSFVGKQFSANDKVYTVEKADNFEYHDPVDGSVSKNQGLRLI 492
Query: 241 FTDGSRLIYRLSGTGSSGATVRLYVESYVPATGDIEADAQVALKPLVQVALELSKLPQFT 300
F DGSR+I+RLSGTGS+GAT+RLY++SY I D QV L PL+ +AL++S+L + T
Sbjct: 493 FADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERT 552
Query: 301 GRDAPTVIT 309
GR APTVIT
Sbjct: 553 GRTAPTVIT 561
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis,
isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1
c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
Length = 572
Score = 286 bits (734), Expect = 3e-93
Identities = 139/310 (44%), Positives = 185/310 (59%), Gaps = 62/310 (20%)
Query: 6 KAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGW 65
+ FFV PSDSLAV+AA+ + K G+ G ARSMPT A+D+VA N +LFE PTGW
Sbjct: 319 RQFFVTPSDSLAVIAANAN---LIFKNGLLGAARSMPTSGALDKVAAKNGIKLFETPTGW 375
Query: 66 KYFGNLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGK------PVEEIL 119
K+FGNLMDAG ++LCGEESFGTGS+HIREKDGIWAVLAWL+++ H K VEEI+
Sbjct: 376 KFFGNLMDAGLINLCGEESFGTGSNHIREKDGIWAVLAWLTILAHKNKNTDHFVTVEEIV 435
Query: 120 KSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSFTVEAGDN 179
+W+Q+GRNY++RYDYE +A N+MM+ L+ K F+ +
Sbjct: 436 TQYWQQFGRNYYSRYDYEQVDSAGANKMMEHLKTKF--QYFEQLK--------------- 478
Query: 180 FEYTDPIDGSVAKKQKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPIDGSVAKKQGVRV 239
D ++Y DP+D SV+K QGVR
Sbjct: 479 ----------------------------------QGNKADIYDYVDPVDQSVSKNQGVRF 504
Query: 240 LFTDGSRLIYRLSGTGSSGATVRLYVESYVPATGDIEADAQVALKPLVQVALELSKLPQF 299
+F DGSR+I+RLSGTGS GAT+R+Y E + I+ + AL ++++ LE+S + QF
Sbjct: 505 VFGDGSRIIFRLSGTGSVGATIRIYFEQFEQQ--QIQHETATALANIIKLGLEISDIAQF 562
Query: 300 TGRDAPTVIT 309
TGR+ PTVIT
Sbjct: 563 TGRNEPTVIT 572
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A
{Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Length = 570
Score = 240 bits (615), Expect = 1e-75
Identities = 61/299 (20%), Positives = 100/299 (33%), Gaps = 72/299 (24%)
Query: 1 MVLGKKAFFVNPSDSLAVLAAHL-DSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELF 59
++ +NP+ LAV +L P + K +++ + A +DRV ++L
Sbjct: 335 GIVTPA-GLMNPNHYLAVAINYLFQHRPLWGKDV--AVGKTLVSSAMIDRVVNDLGRKLV 391
Query: 60 EVPTGWKYFGNLMDAGRLSLCGEESFGT------GSDHIREKDGIWAVLAWLSVVEHTGK 113
EVP G+K+F + + G GEES G G+ +KDGI L + TGK
Sbjct: 392 EVPVGFKWFVDGLFDGSFGFGGEESAGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGK 451
Query: 114 PVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSFT 173
+E ++G + R SA + + VSA
Sbjct: 452 NPQEHYNELAARFGAPSYNRLQASATSAQK-AALSKLSPEMVSASTL------------- 497
Query: 174 VEAGDNFEYTDPIDGSVAKKQKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPIDGSVAK 233
AGD G+ A
Sbjct: 498 --AGD----------------------------------------PITARLTAAPGNGAS 515
Query: 234 KQGVRVLFTDGSRLIYRLSGTGSSGATVRLYVESYVPAT--GDIEADAQVALKPLVQVA 290
G++V+ D R SGT ++Y ES++ IE +A + +++ A
Sbjct: 516 IGGLKVMT-DNGWFAARPSGTED---AYKIYCESFLGEEHRKQIEKEAVEIVSEVLKNA 570
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding,
structural genomics; 2.52A {Thermus thermophilus}
Length = 524
Score = 200 bits (511), Expect = 1e-60
Identities = 56/295 (18%), Positives = 100/295 (33%), Gaps = 72/295 (24%)
Query: 1 MVLGKKAFFVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFE 60
++ + NP+ LA HL + + V ++ T A +DRVA+A +E++E
Sbjct: 293 GIVTPRGLM-NPNHYLAAALHHLYTTRSWPGAKV---GKTAVTSALLDRVAQALGREVYE 348
Query: 61 VPTGWKYFGNLMDAGRLSLCGEESFGT------GSDHIREKDGIWAVLAWLSVVEHTGKP 114
P G+K+F + G L GEES G G +KDGI L ++ G+
Sbjct: 349 TPVGFKHFVAGLLEGWLGFAGEESAGASFLRFDGRPFSTDKDGILMGLLAAELMAKRGQA 408
Query: 115 VEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSFTV 174
+ + ++ ++ GR Y+ R D S ++ K+V G +
Sbjct: 409 PDALYEALAEKLGRPYYARKDLP-VSPEAKARLARLSAKEVHPSTLAGEPV--------- 458
Query: 175 EAGDNFEYTDPIDGSVAKKQKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPIDGSVAKK 234
+ D G+
Sbjct: 459 -----LQVLD-----------------------------------------RATGNGEPL 472
Query: 235 QGVRVLFTDGSRLIYRLSGTGSSGATVRLYVESYVPAT--GDIEADAQVALKPLV 287
G++V+ + R SGT ++Y ES++ + +A L +
Sbjct: 473 GGIKVVA-ANAWFAVRPSGT---EDVAKVYAESFLGEAHLERVLEEATALLHKAL 523
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis
of alginate, structural genomics; 1.70A {Thermus
thermophilus}
Length = 464
Score = 81.9 bits (203), Expect = 1e-17
Identities = 40/170 (23%), Positives = 62/170 (36%), Gaps = 8/170 (4%)
Query: 9 FVNPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYF 68
F NP L LA + F+K ++ +DR+ + + P G+K+
Sbjct: 264 FFNPHQVLTTLALYR-----FRKGHRGRAVKNFAVTWLLDRLGERLGFGVTTTPVGFKWI 318
Query: 69 GNLMDAGRLSLCGEESFGTG-SDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYG 127
G + GEES G G +H+ E+DGI L L V TGK + E K G
Sbjct: 319 KEEFLKGDCFIGGEESGGVGYPEHLPERDGILTSLLLLESVAATGKDLAEQFKEVEALTG 378
Query: 128 RNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSFTVEAG 177
+ YD + + E + A + +G + E
Sbjct: 379 LTHA--YDRLDLPLKAPLDLTPFREPRPLAGLTPKGVDTLDGVKWLYEEA 426
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.004
Identities = 69/363 (19%), Positives = 118/363 (32%), Gaps = 113/363 (31%)
Query: 6 KAF---FVNPSD--SLAV-LAAHLDSIPYFKKTGVKGY--ARSM-------PTGAAVDRV 50
F ++ +D +LA L D+ K +K Y AR M + +A+ R
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 51 AKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWL--SVV 108
N +L + FG G+ G D+ E ++ L ++
Sbjct: 149 VGEGNAQLVAI------FG-----------GQ---GNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 109 EHTGKPVEEILKSHWKQYGRNYFTR-YDY----ENCSAAPCNQMMDELEKKVSAPEFKGV 163
+ + + + E++++ FT+ + EN S P + + +S P GV
Sbjct: 189 KFSAETLSELIRTTLDA--EKVFTQGLNILEWLENPSNTPDKDYLLSIP--ISCP-LIGV 243
Query: 164 TLSAEGRSFTVEAGDN-FEYTDPIDGSVAKKQK-VSAPEFKGVTLSAEGRSFTVEAGDNF 221
A G E + G+ Q V+A AE S ++F
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA------VAIAETDS-----WESF 292
Query: 222 EYTDPIDGSVAKKQGVRVLFTDGSR--LIYR-----------------------LSGTGS 256
V+ ++ + VLF G R Y LS +
Sbjct: 293 F--------VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 257 SGATVRLYVE---SYVPATGDIEADAQVALK-----------P--LVQVALELSKLPQFT 300
+ V+ YV S++PA +E ++L P L + L L K +
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVE----ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 301 GRD 303
G D
Sbjct: 401 GLD 403
Score = 32.3 bits (73), Expect = 0.21
Identities = 36/203 (17%), Positives = 70/203 (34%), Gaps = 61/203 (30%)
Query: 144 CNQMMDELEKKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPID------GSVAKK-QKV 196
+Q+ ++ K + P F A D+ E T P + G V+ +
Sbjct: 30 ASQLQEQFNKILPEPT----------EGF---AADD-EPTTPAELVGKFLGYVSSLVEPS 75
Query: 197 SAPEFKGVTLSAEGRSFTVE--AGDN-----FEYTDPIDGSVAKKQGV-------RV--- 239
+F V L+ F G++ + D ++ K + + R+
Sbjct: 76 KVGQFDQV-LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK 134
Query: 240 ----------LFT---DGSRLIYRL-SGTGSSGATVR----LYVESYVPATGDIEADAQV 281
LF +G+ + + G G++ LY ++Y GD+ +
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY-QTYHVLVGDLIKFSAE 193
Query: 282 ALKPLVQVALELSKLPQFT-GRD 303
L L++ L+ K+ FT G +
Sbjct: 194 TLSELIRTTLDAEKV--FTQGLN 214
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.009
Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 39/169 (23%)
Query: 70 NLMDAGRLSLCGEESFGTG---------SDHIREK---DGIWAVLAWLSVVE-HTGKPVE 116
L A + + G G+G + + I+ WL++ ++ + V
Sbjct: 146 ELRPAKNVLIDG--VLGSGKTWVALDVCLSYKVQCKMDFKIF----WLNLKNCNSPETVL 199
Query: 117 EILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTL------SAEGR 170
E+L+ Q N+ +R D+ + + + EL + + + ++ L +A+
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK-- 257
Query: 171 SFTVEAGDNFEYTDPI-----DGSVAKKQKVSAPEFKGVTLSAEGRSFT 214
A F + I V +SA ++L + T
Sbjct: 258 --AWNA---FNLSCKILLTTRFKQVT--DFLSAATTTHISLDHHSMTLT 299
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.40
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 26/56 (46%)
Query: 233 KKQGVRVLFTDGSRLIYRLSGTGSSGATVRLYVESYVPATGDIEADAQVALKPLVQ 288
+KQ ++ +L A+++LY + PA +A+K ++
Sbjct: 18 EKQALK-----------KLQ------ASLKLYADDSAPA---------LAIKATME 47
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form,
enzyme-metal COMP isomerase; 2.00A {Pyrococcus
horikoshii}
Length = 455
Score = 31.0 bits (71), Expect = 0.48
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 46 AVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGTG----SDHIREKDGIWAV 101
+D +AK + ++ G + ++ GEE+ G +H+ +DG V
Sbjct: 290 LLDDIAKKHGAKVMRTKVGDLIVARALYENNGTIGGEEN---GGVIFPEHVLGRDGAMTV 346
Query: 102 LAWLSVVEHTGKPVEEILKS 121
+ + +GK E++
Sbjct: 347 AKVVEIFAKSGKKFSELIDE 366
>3c9g_A UPF0200/UPF0201 protein AF_1395; uncharacterized UPF0201 protein
AF_135, structural genomics, PSI-II, dimer; 2.30A
{Archaeoglobus fulgidus dsm 4304}
Length = 142
Score = 29.9 bits (67), Expect = 0.53
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 74 AGRLSLCGEESFGTGSDHIR---EKDGIWAVLAWLSVVEHTGKPVEEI 118
R++ C E + + L +++ G+PV+EI
Sbjct: 93 VSRINFCDENAVL-SPIKVTFRLNNIPFSRFLDYIAPETKDGRPVKEI 139
>1mby_A SAK, serine/threonine kinase; POLO domain, strand exchange,
transferase; 2.00A {Mus musculus} SCOP: d.223.1.1
Length = 88
Score = 27.6 bits (61), Expect = 1.5
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 236 GVRVLFTDGSRLIYRLSGTG-----SSGATVRLYVESYVP 270
V V F DGS+L+ + + G T R +P
Sbjct: 24 AVWVQFNDGSQLVMQAGVSSISYTSPDGQTTRYGENEKLP 63
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase,
phosphoglucomutase, isomerase; 2.80A {Sulfolobus
tokodaii}
Length = 455
Score = 29.0 bits (66), Expect = 2.1
Identities = 11/80 (13%), Positives = 23/80 (28%), Gaps = 7/80 (8%)
Query: 46 AVDRVAKANNKELFEVPTGWKYFGNLMDAGRLSLCGEESFGTG----SDHIREKDGIWAV 101
V+ N ++ G + + EE+ G H +DG +
Sbjct: 290 LVEEYLSKYNIQVDWTKVGSVDIAHKVADENALAGFEEN---GGFMYPPHQYVRDGAMSF 346
Query: 102 LAWLSVVEHTGKPVEEILKS 121
L ++ + E+
Sbjct: 347 ALMLELLANENVSSAELFDR 366
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide
binding protein; 1.40A {Saccharomyces cerevisiae} PDB:
3plv_A 1m94_A 1p0r_A
Length = 93
Score = 26.5 bits (58), Expect = 4.4
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 107 VVEHTGKPVEEILKSHWKQYGRNYFTRYDYE 137
+ G +I+ +++ + DYE
Sbjct: 51 LSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81
>3d7a_A UPF0201 protein PH1010; DUF54 family, unknown function; 1.90A
{Pyrococcus horikoshii}
Length = 138
Score = 26.4 bits (58), Expect = 6.7
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 74 AGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGKPVE 116
G+++ + G + IR K+ ++ WL+ G P+E
Sbjct: 97 VGKVNFNEDSPLGPITITIRTKE-PQKLMKWLAPRTKDGVPIE 138
>2nwu_A UPF0201 protein SSO1042; conserved hypothetical protein, sulfolobus
solfataricus P2, structural genomics, PSI-2; 2.40A
{Sulfolobus solfataricus} SCOP: d.77.1.2
Length = 155
Score = 26.5 bits (58), Expect = 7.6
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 74 AGRLSLC-GEESFGTGSDHIR-EKDGIWAVLAWLSVVEHTGKPVEEI 118
G LS ++ G+ E ++ WL+ G P+ +
Sbjct: 95 VGVLSFVDSDKESPLGAIKFYIEYQNPKEIVDWLAPKTAHGVPLWDN 141
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_E 4a1c_E 4a1e_E
Length = 188
Score = 26.6 bits (59), Expect = 8.5
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 190 VAKKQKVSAPEFKGVTLSAEGRSFTV-----EAGDNFEYTDPIDGSVAKKQGVRVLFTDG 244
+ + V P+ VT++A+ R V F Y +D V++
Sbjct: 4 LLTEVNVPIPD--KVTITAKQRVVEVKGPLGTIKRAFRYAS-VDIQKPTADNVKLQIWQA 60
Query: 245 SRLIYRLSGT 254
SR + +
Sbjct: 61 SRKERAVLQS 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.389
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,851,557
Number of extensions: 298203
Number of successful extensions: 742
Number of sequences better than 10.0: 1
Number of HSP's gapped: 728
Number of HSP's successfully gapped: 28
Length of query: 309
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 216
Effective length of database: 4,105,140
Effective search space: 886710240
Effective search space used: 886710240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.9 bits)