RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12282
(309 letters)
>d3pmga4 d.129.2.1 (A:421-561) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 141
Score = 207 bits (529), Expect = 2e-68
Identities = 77/182 (42%), Positives = 100/182 (54%), Gaps = 41/182 (22%)
Query: 128 RNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPID 187
RN+FTRYDYE A +MM +LE + F G SA + +TVE DNFEY
Sbjct: 1 RNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYH---- 56
Query: 188 GSVAKKQKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPIDGSVAKKQGVRVLFTDGSRL 247
DP+DGSV+K QG+R++F DGSR+
Sbjct: 57 -------------------------------------DPVDGSVSKNQGLRLIFADGSRI 79
Query: 248 IYRLSGTGSSGATVRLYVESYVPATGDIEADAQVALKPLVQVALELSKLPQFTGRDAPTV 307
I+RLSGTGS+GAT+RLY++SY I D QV L PL+ +AL++S+L + TGR APTV
Sbjct: 80 IFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTV 139
Query: 308 IT 309
IT
Sbjct: 140 IT 141
>d1kfia4 d.129.2.1 (A:444-572) Exocytosis-sensitive phosphoprotein,
pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Length = 129
Score = 184 bits (469), Expect = 2e-59
Identities = 61/182 (33%), Positives = 87/182 (47%), Gaps = 53/182 (29%)
Query: 128 RNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPID 187
RNY++RYDYE +A N+MM+ L+ K
Sbjct: 1 RNYYSRYDYEQVDSAGANKMMEHLKTKFQYF----------------------------- 31
Query: 188 GSVAKKQKVSAPEFKGVTLSAEGRSFTVEAGDNFEYTDPIDGSVAKKQGVRVLFTDGSRL 247
+ D ++Y DP+D SV+K QGVR +F DGSR+
Sbjct: 32 ----------------------EQLKQGNKADIYDYVDPVDQSVSKNQGVRFVFGDGSRI 69
Query: 248 IYRLSGTGSSGATVRLYVESYVPATGDIEADAQVALKPLVQVALELSKLPQFTGRDAPTV 307
I+RLSGTGS GAT+R+Y E + I+ + AL ++++ LE+S + QFTGR+ PTV
Sbjct: 70 IFRLSGTGSVGATIRIYFEQFEQ--QQIQHETATALANIIKLGLEISDIAQFTGRNEPTV 127
Query: 308 IT 309
IT
Sbjct: 128 IT 129
>d3pmga3 c.84.1.1 (A:304-420) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 117
Score = 120 bits (302), Expect = 9e-35
Identities = 81/117 (69%), Positives = 100/117 (85%)
Query: 11 NPSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGN 70
NPSDS+AV+AA++ SIPYF++TGV+G+ARSMPT A+DRVA A L+E PTGWK+FGN
Sbjct: 1 NPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGN 60
Query: 71 LMDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKSHWKQYG 127
LMDA +LSLCGEESFGTGSDHIREKDG+WAVLAWLS++ + VE+ILK HW ++G
Sbjct: 61 LMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKFG 117
>d1kfia3 c.84.1.1 (A:324-443) Exocytosis-sensitive phosphoprotein,
pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Length = 120
Score = 101 bits (252), Expect = 2e-27
Identities = 75/122 (61%), Positives = 93/122 (76%), Gaps = 9/122 (7%)
Query: 12 PSDSLAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNL 71
PSDSLAV+AA+ + I K G+ G ARSMPT A+D+VA N +LFE PTGWK+FGNL
Sbjct: 2 PSDSLAVIAANANLI---FKNGLLGAARSMPTSGALDKVAAKNGIKLFETPTGWKFFGNL 58
Query: 72 MDAGRLSLCGEESFGTGSDHIREKDGIWAVLAWLSVVEHTGKP------VEEILKSHWKQ 125
MDAG ++LCGEESFGTGS+HIREKDGIWAVLAWL+++ H K VEEI+ +W+Q
Sbjct: 59 MDAGLINLCGEESFGTGSNHIREKDGIWAVLAWLTILAHKNKNTDHFVTVEEIVTQYWQQ 118
Query: 126 YG 127
+G
Sbjct: 119 FG 120
>d1p5dx3 c.84.1.1 (X:259-367) Phosphomannomutase/phosphoglucomutase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 109
Score = 30.8 bits (69), Expect = 0.063
Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 7/108 (6%)
Query: 16 LAVLAAHLDSIPYFKKTGVKGYARSMPTGAAVDRVAKANNKELFEVPTGWKYFGNLMDAG 75
L + A + S + G T + + TG M
Sbjct: 6 LMLFAKDVVS----RNPGADIIFDVKCTRR-LIALISGYGGRPVMWKTGHSLIKKKMKET 60
Query: 76 RLSLCGEES--FGTGSDHIREKDGIWAVLAWLSVVEHTGKPVEEILKS 121
L GE S DGI++ L ++ + E + +
Sbjct: 61 GALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSA 108
>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 150
Score = 27.6 bits (61), Expect = 1.3
Identities = 13/105 (12%), Positives = 32/105 (30%), Gaps = 10/105 (9%)
Query: 112 GKPVEE---ILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKVSAPEFKGVTLSAE 168
GK E L++ + F +++ + + + ++ F + +A
Sbjct: 37 GKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENA- 95
Query: 169 GRSFTVEAGDNFEYTDPIDGSVAKKQKVSAPEFKGVTLSAEGRSF 213
+ + D ++ E +G A GR+
Sbjct: 96 ------VGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRAS 134
>d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga
maritima [TaxId: 2336]}
Length = 308
Score = 28.1 bits (62), Expect = 1.3
Identities = 5/50 (10%), Positives = 16/50 (32%)
Query: 102 LAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDEL 151
WL+ + G +L ++ +++ + + + M
Sbjct: 32 GIWLNRFRYNGGNAYPLLDKWIEEKSKDWKPENPFNDQLSPAAIDMYRFY 81
>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 52
Score = 25.8 bits (57), Expect = 1.3
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 8/48 (16%)
Query: 115 VEEILKSHWKQYGRNYFTR---YDYENCSAAP-----CNQMMDELEKK 154
VE+I+ ++ Y+ + Y + P C ++ + E
Sbjct: 4 VEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNLDCQDLIQQYEAS 51
>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus
musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
Length = 73
Score = 25.9 bits (57), Expect = 1.6
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 14/51 (27%)
Query: 115 VEEILKS-----------HWKQYGRNYFTRYDYENCSAAPCNQMMDELEKK 154
VE++L WK + T EN C ++ E +
Sbjct: 16 VEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLD---CPDLIAEFLQS 63
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP
{Ectothiorhodospira halophila [TaxId: 1053]}
Length = 125
Score = 26.9 bits (58), Expect = 1.8
Identities = 7/80 (8%), Positives = 24/80 (30%), Gaps = 1/80 (1%)
Query: 96 DGIWAVLAWLSVVEHTGKPVEEILKSHWKQYGRNYFTRYDYENCSAAPCNQMMDELEKKV 155
G + +++++ + + + G+N+F S + + +
Sbjct: 28 FGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN 87
Query: 156 SAPEFKGVTLSAEGRSFTVE 175
F+ + V+
Sbjct: 88 LNTMFEYTF-DYQMTPTKVK 106
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 25.1 bits (55), Expect = 3.1
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 115 VEEILKSHWKQYGRNYF----TRYDYENCSAAP------CNQMMDELEKK 154
VE I+ + G+ + YD E+ + P C + + + ++
Sbjct: 9 VERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRR 58
>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 89
Score = 25.2 bits (55), Expect = 4.7
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 237 VRVLFTDGSRLIYRLSGTGSSGATVRLYVESYVPATGD 274
+++ DG RL+ + + + + +RL++ PA
Sbjct: 17 IQIRLADGGRLVQKFNHSHRI-SDIRLFIVDARPAMAA 53
>d1pi1a_ a.29.7.1 (A:) Mob1a {Human (Homo sapiens) [TaxId: 9606]}
Length = 185
Score = 25.6 bits (56), Expect = 7.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 176 AGDNFEYTDPIDGSVAKKQKVSAPEF 201
AG +EY ++ K K SAP++
Sbjct: 58 AGPRYEYHWADGTNIKKPIKCSAPKY 83
>d1qbaa1 b.1.18.2 (A:781-885) Bacterial chitobiase
(N-acetyl-beta-glucoseaminidase), C-terminal domain
{Serratia marcescens [TaxId: 615]}
Length = 105
Score = 24.4 bits (53), Expect = 8.8
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 182 YTDPIDGSVAKKQKVSA-PEFKGVTLSAEGRSFTVEAGDNF-EYTDPIDGSVAKKQGVRV 239
Y P+ G+ K+ A G+ + ++ + G + Y +V+ + VR
Sbjct: 37 YRLPVPGARVAGGKLEANIALPGLGIE-----YSTDGGKQWQRYDAKAKPAVSGEVQVRS 91
Query: 240 LFTDGSR 246
+ DG R
Sbjct: 92 VSPDGKR 98
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.133 0.389
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,161,841
Number of extensions: 55160
Number of successful extensions: 210
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 16
Length of query: 309
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,240,546
Effective search space: 277882304
Effective search space used: 277882304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)