Query psy12283
Match_columns 788
No_of_seqs 133 out of 224
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 23:21:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03635 Vps35: Vacuolar prote 100.0 8E-238 2E-242 2076.2 20.7 729 13-746 1-762 (762)
2 KOG1107|consensus 100.0 5E-228 1E-232 1875.9 60.3 749 29-788 1-760 (760)
3 KOG3682|consensus 100.0 3.8E-42 8.2E-47 382.6 41.3 543 22-639 146-759 (930)
4 KOG1107|consensus 99.6 1.1E-15 2.4E-20 173.6 8.9 299 38-419 148-447 (760)
5 PF08767 CRM1_C: CRM1 C termin 47.4 2E+02 0.0044 31.9 11.8 88 333-426 84-174 (319)
6 PF03000 NPH3: NPH3 family; I 47.1 2.3E+02 0.005 30.7 11.8 39 330-368 193-231 (258)
7 KOG1991|consensus 40.3 9.2E+02 0.02 31.0 18.7 24 442-465 715-738 (1010)
8 KOG0889|consensus 39.0 1.3E+03 0.028 34.2 18.8 110 262-377 1958-2075(3550)
9 PF00244 14-3-3: 14-3-3 protei 33.5 1.9E+02 0.004 30.8 8.5 64 685-749 142-206 (236)
10 KOG1422|consensus 33.2 46 0.00099 34.9 3.6 72 65-154 124-201 (221)
11 PF14223 UBN2: gag-polypeptide 33.1 3.1E+02 0.0067 25.3 9.0 53 222-275 31-83 (119)
12 KOG1410|consensus 30.6 1.1E+03 0.025 29.2 21.0 99 316-422 254-354 (1082)
13 PLN03217 transcription factor 30.4 88 0.0019 28.2 4.4 48 726-773 13-62 (93)
14 PF14675 FANCI_S1: FANCI solen 30.3 6.9E+02 0.015 26.5 13.2 142 365-536 7-162 (223)
15 cd00095 IFab Interferon alpha, 29.9 2.2E+02 0.0047 28.4 7.7 69 708-776 51-135 (152)
16 smart00076 IFabd Interferon al 27.3 3E+02 0.0064 26.3 7.8 69 708-776 19-103 (117)
17 PF10776 DUF2600: Protein of u 26.3 6.1E+02 0.013 28.6 11.1 94 284-397 41-145 (330)
18 COG2147 RPL19A Ribosomal prote 25.2 1.3E+02 0.0028 29.9 4.9 46 38-83 95-145 (150)
19 PF13424 TPR_12: Tetratricopep 25.1 3.6E+02 0.0078 22.4 7.4 73 659-741 3-75 (78)
20 KOG2561|consensus 24.4 81 0.0018 36.6 3.9 28 129-157 249-276 (568)
21 PF14677 FANCI_S3: FANCI solen 21.7 6.6E+02 0.014 26.5 9.9 110 261-396 105-218 (219)
22 PF07540 NOC3p: Nucleolar comp 21.2 1.8E+02 0.0039 26.7 4.9 36 127-163 24-60 (95)
No 1
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=100.00 E-value=8.4e-238 Score=2076.21 Aligned_cols=729 Identities=57% Similarity=0.948 Sum_probs=235.6
Q ss_pred HHHHHHHHHHHHhHHHHHHhhchhhHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHhhHHHHHHHHHHhhCCCCchh
Q psy12283 13 RLLEEASHIVKTQSLQMKRCLDSDKLMDALKHASTMLSELRTSLLSPKNYYELYMAVTDELRQLELYLVDEFQRGRKVPD 92 (788)
Q Consensus 13 k~l~ea~~~Vk~qa~~Mkr~ld~~~L~~aLkhas~mL~ELRts~LsPk~YYeLYm~v~d~L~~L~~~l~d~~~~g~~l~d 92 (788)
|||+||+++||+||++||||||+++|||||||||+||+||||++||||+||||||+|||+|++|+.||.|+|++|++++|
T Consensus 1 k~L~ea~~~vk~qa~~Mkr~Ld~~~l~~aLk~as~mL~ELRt~~LsPk~YYeLYm~vfd~L~~L~~~l~~~~~~~~~l~d 80 (762)
T PF03635_consen 1 KLLEEALSVVKQQAFLMKRCLDNNKLMDALKHASNMLSELRTSSLSPKQYYELYMQVFDELRHLSSYLKDEHKKGRKLAD 80 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHhHHHHHHHHHHhccCCCcHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcchhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhcccchhHHHHHHHHHHHhchhcCCCCCCCCCCCCC
Q psy12283 93 LYELVQYAGNIVPRLYLLITVALVYIKTNSSLKRDLLKDLVEMCRGVQHPLRGLFLRNYLLQCTRNVLPDTPEDEGDQAE 172 (788)
Q Consensus 93 LYE~VQyagnIlPRLYLmItVG~~yi~~~~~p~~eiLkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~~~~~~~~~ 172 (788)
|||+||||||||||||||||||++||+++++|++||||||+|||||||||+|||||||||+|++||+|||+++ +++++
T Consensus 81 LYE~VQyagnIvPRLYLmitVG~~yi~~~~~~~~eilkDlvEMcrGVQhP~RGLFLR~YL~q~~k~~LP~~~~--~~~~~ 158 (762)
T PF03635_consen 81 LYELVQYAGNIVPRLYLMITVGSVYIKSKEAPAKEILKDLVEMCRGVQHPIRGLFLRYYLSQMTKDKLPDTGS--EEGNG 158 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhccccchhHHHHHHHHHHHhhhhCCCCCC--CCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999874 56889
Q ss_pred CchhhhHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhcccCCCHHHHhhhhhhhHHHHHHhh
Q psy12283 173 GTVRDSVDFILMNFAEMNKLWVRMQHQGHSRDKERREREREELRILVGTNLVRLSELDSITRDKYKKLVLPGILEQVVSC 252 (788)
Q Consensus 173 g~v~dsi~FlL~NF~EMNKLWVRmQhqg~~rer~kr~~ER~eL~iLVG~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~C 252 (788)
|++.||++||++||+||||||||||||||+|||+||++||+|||+||||||||||||||+|+++|++.|||+||||||+|
T Consensus 159 g~~~dsi~Fll~NF~EMNKLWVRlqhqg~srer~~R~~ER~eL~iLVG~NLvrLSqLeg~~~~~Y~~~iLP~ileqiv~c 238 (762)
T PF03635_consen 159 GDVNDSIDFLLTNFIEMNKLWVRLQHQGHSREREKREKERKELRILVGSNLVRLSQLEGVDLEMYKEKILPRILEQIVQC 238 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHhhchhccChhhHHHhHHHHHHHHhccccCCCHHHHHHHHHHHHhhhhhccch-----------------h
Q psy12283 253 RDAIAQEYLMECIIQVFPDEFHLATLTAFLKSCAELQAGVNVKNILIALIDRLSLYAQKNKE-----------------F 315 (788)
Q Consensus 253 ~D~lAQeYLmd~IIQvFPdefHl~TL~~lL~~~~~l~~~V~i~~Il~~Li~RL~~y~~~~~~-----------------~ 315 (788)
||++||+|||||||||||||||++||+.||++|++++|+||++.|+++|||||++|+.++++ +
T Consensus 239 ~D~lAQeYL~d~iIQvFPDefHL~TL~~lL~~~~~L~~~V~i~~il~~Li~RL~~y~~~~~~~~~~~~~~~~~~~~~~~~ 318 (762)
T PF03635_consen 239 RDVLAQEYLMDVIIQVFPDEFHLQTLDELLSACLQLQPGVNIKEILISLIDRLANYAEREPESESEFESEKEEEEEIPED 318 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhccccccccchhhhhcccchhh
Confidence 99999999999999999999999999999999999999999999999999999999985443 5
Q ss_pred chHHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhccccccccCCchhHHHHHHH
Q psy12283 316 NSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYPDKVDYIDKILQTTVETFQKLNIERVEYNTPVSRELMRL 395 (788)
Q Consensus 316 ~~lf~~f~~~i~~l~~~~~~l~l~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~~~~l~~l 395 (788)
+++|++||+++.+++++||++|++|++++++++++|+++|||++++|||.+|+.|++++...+..+...+.++.++|++|
T Consensus 319 ~~lF~~f~~~~~~l~~~~~~l~~~~~i~l~~sll~l~l~~yp~~~~~vd~vl~~~~~~l~~~~~~~~~~~~~~~~~L~~L 398 (762)
T PF03635_consen 319 VDLFEVFWDQLSKLIEARPDLPLEDIISLLVSLLNLSLKCYPDNLDYVDKVLKFCAEKLSNIGDSGKNHSSEAQKELVKL 398 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999987544555567889999999
Q ss_pred HHHHHHhhhhHHHHhccCCcHHHHhccCchhhHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHhhhhccCCCCCCCCC---
Q psy12283 396 LKIFIDQYNNILTVIQLTYFAPLMELFDFYGRKSVSAYLITNALNNDTLVPTSESVDSILTIVSSLVQDQDDQPAEE--- 472 (788)
Q Consensus 396 L~~pl~~~~~~~~vl~l~~f~~ll~~l~~~~r~~va~~Il~~~l~~~~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~--- 472 (788)
|..|+++|.+++++++|++|++|++.|++++||+||..|+++++++++.|+|+++++.+|++++||++|.+++++++
T Consensus 399 L~~Pi~~~~~i~~vL~L~~y~~Ll~~L~~~~rk~IA~~Ii~~iL~~~~~Ist~e~v~~ll~li~pLi~d~~d~~~~~~~~ 478 (762)
T PF03635_consen 399 LTLPIDSYFSILTVLSLENYPPLLSLLPYETRKQIALEIIDNILENNTIISTPEEVDNLLELISPLIKDQDDQPSSEPDL 478 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHHhhcccHHHHHcCccHHHHHHhCChHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhhCCCCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888764
Q ss_pred -CChhhHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHhhhhh---------h
Q psy12283 473 -EDPEDFAEEQGLLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQFSALR---------E 542 (788)
Q Consensus 473 -~d~~~~~~eq~lv~r~ihli~~~d~e~q~~~l~~~R~~f~~gg~~ri~~tlp~LV~~~~~L~~~~~~~~---------~ 542 (788)
.++++|.+||++|||+||+++++|+++|+++|..+|+||++||++|++||||||||++|+|+|++...+ .
T Consensus 479 ~~~~eef~eeQ~~varliHLi~~~D~d~~~~iL~~~rk~~~~Gg~~ri~~TlP~LIf~~lkL~r~~~~~~~~~~~~~~~~ 558 (762)
T PF03635_consen 479 KEDSEEFAEEQELVARLIHLIRSDDPDQQFEILNIARKHFGNGGPKRIRYTLPPLIFAALKLARRIKDLKQKYPNNAIKD 558 (762)
T ss_dssp ------TCCCHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHCTT-SSSHHHHCHHHHHHHHHHHHHHHCCC---------C
T ss_pred cCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCCceeeeeHHHHHHHHHHHHHHHHHhhccchhhcccc
Confidence 368899999999999999999999999999999999999999999999999999999999999998765 4
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHhcccCCCchhHhHHHHHHHHHHhhhhcccchHHHHHH
Q psy12283 543 EDEMWSKKCSKIFRFCHQIILSLIKAEL-AELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAA 621 (788)
Q Consensus 543 ~~~~~~~~~~k~f~fv~~~I~~l~~~~~-~~l~lkLyLq~A~~Ad~~~~~~~~~iayeF~~qAf~iyEe~i~dS~~Q~~a 621 (788)
.++.|+.+++++|+|||+||+.|++... ++++||||||||++||+++ ++++|||||+|||+||||+|+|||+|++|
T Consensus 559 ~~~~~~~~~~kifkfi~~~i~~L~~~~~~~~lalkL~Lq~A~~AD~~~---~e~iaYEFf~QAf~iYEE~IsDSk~Q~~a 635 (762)
T PF03635_consen 559 DDEDWEKKCKKIFKFIHQCISALYQIHPSSELALKLYLQAAIVADQCG---LEEIAYEFFSQAFTIYEEEISDSKAQFQA 635 (762)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHH--SHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHHHhhC---cHHHHHHHHHHHHHHHHhhccchHHHHHH
Confidence 4668999999999999999999997554 8999999999999999999 79999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCccCchHHHHHHHHHHhhccCCchhHHHHHHhhhhccCCCCC--CCccccchhHHHHHHHHHHHHH
Q psy12283 622 ITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFKKPDQCSGVCTCSHLFWSGKNS--QGEEIRDGKRVLECLKKGVRIA 699 (788)
Q Consensus 622 l~~ii~tl~~~~~~~~e~y~~L~tk~~~~askLLkK~dQcrav~~cshLfW~~~~~--~~~~~~d~krVleCLqkalkiA 699 (788)
|.+|||||+++|+|++||||+|+||||+||||||||||||||||+||||||+++.+ ++..+||||||+||||||||||
T Consensus 636 L~~ii~tL~~~r~~~~Enyd~L~tk~t~yasKLLKK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriA 715 (762)
T PF03635_consen 636 LTLIIGTLQKTRSFSEENYDTLITKCTLYASKLLKKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIA 715 (762)
T ss_dssp HHHHHHHHCC-----HHHHHHHHHHHHHHHHC-SSHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999864 4568999999999999999999
Q ss_pred HhhhchhhhHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHh
Q psy12283 700 SQCMDMSVQVQLFIELLNHYIYYFEKKNEHITVAMLNQLIGKIRDEL 746 (788)
Q Consensus 700 ~~~~d~~~~~~LfieiLn~~ly~~~~~~~~vt~~~in~Li~lI~~~~ 746 (788)
|+|||+.++++|||||||+|+|||++||++||++||||||++|++|+
T Consensus 716 ds~md~~~~~~LfveILn~ylyf~~~~~~~vt~~~in~LIelI~~~~ 762 (762)
T PF03635_consen 716 DSCMDPSQSVQLFVEILNRYLYFFEKGNEEVTVKYINGLIELIKENL 762 (762)
T ss_dssp HCSSSHHHHHHHHHHHHHHHHHHHTTT-TTS-HCHHHHHHHHHHCC-
T ss_pred HHHhCcchhHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999985
No 2
>KOG1107|consensus
Probab=100.00 E-value=5.3e-228 Score=1875.89 Aligned_cols=749 Identities=54% Similarity=0.920 Sum_probs=719.6
Q ss_pred HHHhhchhhHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHhhHHHHHHHHHHhhCCCCchhhHHHHHHhcchhhHHH
Q psy12283 29 MKRCLDSDKLMDALKHASTMLSELRTSLLSPKNYYELYMAVTDELRQLELYLVDEFQRGRKVPDLYELVQYAGNIVPRLY 108 (788)
Q Consensus 29 Mkr~ld~~~L~~aLkhas~mL~ELRts~LsPk~YYeLYm~v~d~L~~L~~~l~d~~~~g~~l~dLYE~VQyagnIlPRLY 108 (788)
|+||||+|||||||||+++||+|||||.||||+||||||..||+|+.|+.||.|++++|++++||||+||||||||||||
T Consensus 1 m~r~ld~~~l~dalk~~~~ml~elRts~LsPk~YYeLym~~~~~L~~l~~~l~ee~~~~~~l~dLYElVQyagni~PRlY 80 (760)
T KOG1107|consen 1 MKRCLDKNKLMDALKHSAQMLSELRTSKLSPKKYYELYMRSFDELRCLEIFLKEETRRGHKLADLYELVQYAGNILPRLY 80 (760)
T ss_pred CchhhhcccHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcccchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHhhcccchhHHHHHHHHHHHhchhcCCCCCCCCCCCCCCchhhhHHHHHHhHHH
Q psy12283 109 LLITVALVYIKTNSSLKRDLLKDLVEMCRGVQHPLRGLFLRNYLLQCTRNVLPDTPEDEGDQAEGTVRDSVDFILMNFAE 188 (788)
Q Consensus 109 LmItVG~~yi~~~~~p~~eiLkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~~~~~~~~~g~v~dsi~FlL~NF~E 188 (788)
||||||++|++++++|+|||||||||||||||||+||||||+||+||+|++||+.+ +.+++.+..+.|+++|++.||+|
T Consensus 81 Ll~TvGsvyik~~~a~~keIlkDlveMCRgVQhPlRGLFLR~YL~q~tr~~LP~~~-edee~~~~~~~d~~~Fvl~NF~E 159 (760)
T KOG1107|consen 81 LLITVGSVYIKSKEAPRKEILKDLVEMCRGVQHPLRGLFLRSYLAQCTRDKLPDIG-EDEEGDADTVMDAVEFVLINFTE 159 (760)
T ss_pred eeeEeceEEEecCCCcHHHHHHHHHHHHhccccchhHHHHHHHHHhcccccCCCCC-CCccchhhccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988 44556566677999999999999
Q ss_pred HHHHHHHhhccCCChhHHHHHHHHHHHHHHHhhhhhhhhcccCCCHHHHhhhhhhhHHHHHHhhhhhhhhHHHHhhchhc
Q psy12283 189 MNKLWVRMQHQGHSRDKERREREREELRILVGTNLVRLSELDSITRDKYKKLVLPGILEQVVSCRDAIAQEYLMECIIQV 268 (788)
Q Consensus 189 MNKLWVRmQhqg~~rer~kr~~ER~eL~iLVG~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~C~D~lAQeYLmd~IIQv 268 (788)
|||||||||||||+||||||+|||+|||||||+|||||||++|++.++|++.|||+||||||+|||.+||+|||||||||
T Consensus 160 MNKLWVRmQHqGp~re~ekrekER~ELriLVG~nLvrLsQle~~~~~mY~~~vLp~iLEQvV~CrD~laQeYLmeciiQv 239 (760)
T KOG1107|consen 160 MNKLWVRMQHQGPSREKEKREKERNELRILVGKNLVRLSQLEGVDLEMYRDDVLPRILEQVVNCRDELAQEYLMECIIQV 239 (760)
T ss_pred HHHHhhhhccCCchhHHHHHHHHHHHHHHHHhhhHHHHHHhccccHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhHHHhHHHHHHHHhccccCCCHHHHHHHHHHHHhhhhhccch------hchHHHHHHHHHHHHHhcCCCCCHHhHH
Q psy12283 269 FPDEFHLATLTAFLKSCAELQAGVNVKNILIALIDRLSLYAQKNKE------FNSLFETFSEQVASIVQSRIDMPAEDIV 342 (788)
Q Consensus 269 FPdefHl~TL~~lL~~~~~l~~~V~i~~Il~~Li~RL~~y~~~~~~------~~~lf~~f~~~i~~l~~~~~~l~l~d~i 342 (788)
||||||++||+.+|++|.+++|+||++.++.+|++||++|+.++++ ++++|++||.++.+++++||+||+.+++
T Consensus 240 F~DefHLqTLd~~L~ac~~L~~~V~i~~~l~~l~dRLs~y~t~~~e~~p~~~~~~~f~~~~~~~~~vi~~r~dmpl~~~v 319 (760)
T KOG1107|consen 240 FPDEFHLQTLDTLLGACPQLQPSVNIKILLIALVDRLSNYATSENEVLPAPLQMEAFEKLSNAITKVIQSRPDMPLDDIV 319 (760)
T ss_pred cCcHHHHHhHHHHHHHHHhcCCCcchHHHHHHHhhhhhHHHhccccCCchHHHHHHHHHHHHHHHHHHhcCCCCcHHHhH
Confidence 9999999999999999999999999999999999999999997654 6889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCchhhHHHHH--HHHHHHHhccccccccCCchhHHHHHHHHHHHHHhhhhHHHHhccCCcHHHHh
Q psy12283 343 ALQVSLINLALKCYPDKVDYIDKIL--QTTVETFQKLNIERVEYNTPVSRELMRLLKIFIDQYNNILTVIQLTYFAPLME 420 (788)
Q Consensus 343 ~l~~sll~l~l~~yp~~~~~vd~il--~~~~~~l~~~~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~~f~~ll~ 420 (788)
++.+|+++|+++|||++.||+|++| +.|....+..+ ...+.++.+++.++|..|++.|++++++++|++|+++++
T Consensus 320 ~L~~sll~~~l~~ypdr~dy~dqvf~~~~~~~~~s~~~---~~~~s~~~k~l~~~L~~p~~~y~nvvtll~L~~~~~v~~ 396 (760)
T KOG1107|consen 320 TLYVSLLNFTLKCYPDRLDYADQVFQGGSCINQLSSTG---KLADSPVTKELVALLSAPLEKYKNVLTLLKLSNYPKVME 396 (760)
T ss_pred HHHHHHHHhhHhhcCchHHHHHHHccCCCcccccCccc---cccccHHHHHHHHHHcchHHHHHhHHHHHHhhccCchhH
Confidence 9999999999999999999999999 66666655433 556778899999999999999999999999999999999
Q ss_pred ccCchhhHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhhcCCCHHHH
Q psy12283 421 LFDFYGRKSVSAYLITNALNNDTLVPTSESVDSILTIVSSLVQDQDDQPAEEEDPEDFAEEQGLLGRLVHQFKSDVPDQQ 500 (788)
Q Consensus 421 ~l~~~~r~~va~~Il~~~l~~~~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~~d~~~~~~eq~lv~r~ihli~~~d~e~q 500 (788)
.+++.+++.||..|++++++.++.+.+.++++.+|+++++|++|.++.|.++.|+++|.+||++||++||++.++||+.|
T Consensus 397 ~~D~~~~~~ma~~i~q~~l~~~t~~~t~d~v~~l~~li~~likd~~~~~~~~~d~edf~eeqn~va~lIh~L~nddp~~q 476 (760)
T KOG1107|consen 397 YLDYETRKNMASYIVQSILENNTVISTADEVDSLFSLISGLIKDQDGQSADEVDEEDFQEEQNLVARLIHLLRNDDPEEQ 476 (760)
T ss_pred HhchHHHHHHHHHHHHHHHhhcceeehHhhHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHhhhhhhhhHHHH-HHhhHHHHHHHHHHHHHh-ccccchhHHHHH
Q psy12283 501 YLILSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQFSALREEDEMWS-KKCSKIFRFCHQIILSLI-KAELAELPLRLF 578 (788)
Q Consensus 501 ~~~l~~~R~~f~~gg~~ri~~tlp~LV~~~~~L~~~~~~~~~~~~~~~-~~~~k~f~fv~~~I~~l~-~~~~~~l~lkLy 578 (788)
+.|+..+|++|+.||++ ++||+||+||++|+|+|+++..++.+.+|+ ...+++|+|+.+| +++ .++.++++||||
T Consensus 477 ~~il~~~r~~f~~gG~~-l~~t~Pplv~~~~~Lir~~~~~~~~~~~~~s~~~~~~~q~~~~~--~l~~~~e~~eL~LrLy 553 (760)
T KOG1107|consen 477 FLILNSAKKHFIKGGPN-LKYTLPPLVFSAYKLVRRFRDMKDNDDKWDSATKKFIFQFLNIC--ELLSNVELPELALRLY 553 (760)
T ss_pred HHHHHHHHHHhhcCCcc-ccccccHHHHHHHHHHHHcccccccchhhhhhhHHHHHHHHhHH--HHhccCCchhhHHHHH
Confidence 99999999999999998 999999999999999999998888877776 3567899999999 555 678899999999
Q ss_pred HHHHHHhcccCCCchhHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhhcCCCccCchHHHHHHHHHHhhccCCc
Q psy12283 579 LQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFKKP 658 (788)
Q Consensus 579 Lq~A~~Ad~~~~~~~~~iayeF~~qAf~iyEe~i~dS~~Q~~al~~ii~tl~~~~~~~~e~y~~L~tk~~~~askLLkK~ 658 (788)
||||++||+++ ++++|||||||||++|||+|+|||+|++||.+|||||++|+||++||||+|+||||+|||||||||
T Consensus 554 Lq~A~aAd~~~---~etvaYEFfsQAfslyEeeisDSkaQ~~al~lIiGTlqr~~~f~~En~dpL~~kctl~asKLLKKP 630 (760)
T KOG1107|consen 554 LQCAEAADQCD---LETVAYEFFSQAFSLYEEEISDSKAQVTALQLIIGTLQKTRVFSVENRDPLTTKCTLYAAKLLKKP 630 (760)
T ss_pred HHHHHhcccCC---CcchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhccHHHhhcccccccchHHHHHHHHHHHhhcCC
Confidence 99999999999 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhccCCCCCCCccccchhHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcCCccccHHHHHHH
Q psy12283 659 DQCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNEHITVAMLNQL 738 (788)
Q Consensus 659 dQcrav~~cshLfW~~~~~~~~~~~d~krVleCLqkalkiA~~~~d~~~~~~LfieiLn~~ly~~~~~~~~vt~~~in~L 738 (788)
|||||||+||||||++++ +|++++|||||+||||||+|||++|||+..+++|||||||+|+|||++||++||+++||+|
T Consensus 631 DQcRaVytcsHLfW~~~~-ngE~l~dGkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek~n~~iti~~I~~L 709 (760)
T KOG1107|consen 631 DQCRAVYTCSHLFWSGRT-NGEKLKDGKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEKGNDGITIKHIESL 709 (760)
T ss_pred cceeeeeeeehhhhcccC-CccccCchHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhcCCCcccHHHHHHH
Confidence 999999999999999986 6788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccchhhHHHHHHHHHHHHHHHhcccCC-CCCCCCCCCCCC
Q psy12283 739 IGKIRDELANLESNEETEQISKHFTNTLFHLRNRQEGP-PVDGISYEGLTL 788 (788)
Q Consensus 739 i~lI~~~~~~l~~~~~~~~~~~~~~~t~~~i~~~~~~~-~~~~~~~~~i~~ 788 (788)
|++|++|+.+++.+++++.+.+||.||++||+-+++++ ++.|+.|+|+.+
T Consensus 710 I~lik~n~~~l~~s~~~d~~~~~~~ntl~~l~l~~es~~~~l~~~ye~~~~ 760 (760)
T KOG1107|consen 710 IKLIKTNAKSLKSSNEADLSESFLSNTLETLELIKESVLGALGELYEGIIF 760 (760)
T ss_pred HHHHHhhhhhccccchhhhhhhHHHHHHHHHHHHhcCccccchhhhhcccC
Confidence 99999999999999999999999999999999999988 455999999864
No 3
>KOG3682|consensus
Probab=100.00 E-value=3.8e-42 Score=382.57 Aligned_cols=543 Identities=19% Similarity=0.188 Sum_probs=433.5
Q ss_pred HHHhHHHHHHhhchhhHHHHHHHHHHHHHh-hhcCCCCChhhHHHHHHHHHhhHHHHHHHHHHhhCC----CC-------
Q psy12283 22 VKTQSLQMKRCLDSDKLMDALKHASTMLSE-LRTSLLSPKNYYELYMAVTDELRQLELYLVDEFQRG----RK------- 89 (788)
Q Consensus 22 Vk~qa~~Mkr~ld~~~L~~aLkhas~mL~E-LRts~LsPk~YYeLYm~v~d~L~~L~~~l~d~~~~g----~~------- 89 (788)
|-+++--.+++-..++-.+++|.....-+- +-|+.+ .+|+.-|+.++|.|+.+|+.+|++++.. ++
T Consensus 146 I~el~~~~~~Aw~~d~~v~~lK~~i~~~kLl~dt~v~--~fyp~~fV~~td~ld~fG~iv~eRi~~k~~~d~~~~~~~~~ 223 (930)
T KOG3682|consen 146 ILELSTKSIRAWSLDNTVENLKSDISSFKLLLDTFVA--WFYPRAFVALTDKLDEFGMIVVERIRLKSLSDEKNLKNVKK 223 (930)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHhhhhhhhhccchhHH--hhccceeEeeehhhHHHhHHHHHHHHHHhhhhhhhhhhhhh
Confidence 445555555555555556666665443333 334444 8999999999999999999999998542 11
Q ss_pred -----------------chhhHHHH----------HH---hcchhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhcc
Q psy12283 90 -----------------VPDLYELV----------QY---AGNIVPRLYLLITVALVYIKTNSSLKRDLLKDLVEMCRGV 139 (788)
Q Consensus 90 -----------------l~dLYE~V----------Qy---agnIlPRLYLmItVG~~yi~~~~~p~~eiLkDLvEMcRGV 139 (788)
-.+..|.. |- .....||-||+.+|..|+.|+-...++|.|.+|+-|.||.
T Consensus 224 ~~~~~l~~~~~lit~f~~e~~~esfk~~c~~~~~f~~i~~~~elyp~~ylea~Il~c~~fL~~~~~~e~l~RL~~m~rg~ 303 (930)
T KOG3682|consen 224 ASQRFLILRENLITAFGREDRVESFKIVCESANLFQSIPPQSELYPYYYLEAIILDCFGFLLYLLAKENLARLSAMFRGE 303 (930)
T ss_pred hHHHHHHHHHhhhhhcChhhhhhHHHHHHhChHhHhccCchhhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhhcc
Confidence 02333332 21 2368999999999999999998877789999999999999
Q ss_pred cchhHHHHHHHHHHHhchhcCCCCCCCCCCCCCCchhhhHHHHHHhHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHH
Q psy12283 140 QHPLRGLFLRNYLLQCTRNVLPDTPEDEGDQAEGTVRDSVDFILMNFAEMNKLWVRMQHQGHSRDKERREREREELRILV 219 (788)
Q Consensus 140 QhPlRGLFLR~YL~q~~k~~LPd~~~~~~~~~~g~v~dsi~FlL~NF~EMNKLWVRmQhqg~~rer~kr~~ER~eL~iLV 219 (788)
|+|+..+|+|+|+++++...-|... |+++.++-.++.-|...| +
T Consensus 304 ~dPlvs~yar~y~~~~~~~i~~~~~--------~yL~k~~~d~l~~f~~~~----------------------------~ 347 (930)
T KOG3682|consen 304 QDPLVSDYARNYFLKLSEIIDIPIR--------FYLEKSMIDCLKFFDAAN----------------------------L 347 (930)
T ss_pred CCchHHHHHHHHHHHHhhhcCcchH--------HHHHHHHHHHHHHHHHHh----------------------------H
Confidence 9999999999999999987754432 566666655555555432 2
Q ss_pred hhhhhhhhcccCCCHHHHhhhhhhhHHHHHHhhh-hhhhhHH-----------------HHhhchhccChhhHHHhHHHH
Q psy12283 220 GTNLVRLSELDSITRDKYKKLVLPGILEQVVSCR-DAIAQEY-----------------LMECIIQVFPDEFHLATLTAF 281 (788)
Q Consensus 220 G~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~C~-D~lAQeY-----------------Lmd~IIQvFPdefHl~TL~~l 281 (788)
.+ +.|++-..|.+.+.|...+-|++ +||-+|- |+..|+- |+.-....||||+..+..-++
T Consensus 348 d~-~e~~~i~~~~~~~~l~sL~~pa~-~~i~~cl~~~~~~~~~~~~l~~~~~~g~nv~~lLh~~~t~l~~e~~~~~sm~~ 425 (930)
T KOG3682|consen 348 DI-LERLAIMCSQFNDDLSSLFAPAH-ITIYSCLIDPLNRTPHWRVLHDWMQAGKNVMELLHRKKTSLADERKEAVSMQG 425 (930)
T ss_pred HH-HhhhhhhhcccchhhhhhccHHH-HHHHHHhhccccccchHHHHHHHHhcCccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 22 44556677888899999888876 9999973 4444433 667777899999999999999
Q ss_pred HHHHh-ccccCCCHHHHHHHHHHHHhhhhhccchhchHHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHHHHHHHcCCch
Q psy12283 282 LKSCA-ELQAGVNVKNILIALIDRLSLYAQKNKEFNSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYPDKV 360 (788)
Q Consensus 282 L~~~~-~l~~~V~i~~Il~~Li~RL~~y~~~~~~~~~lf~~f~~~i~~l~~~~~~l~l~d~i~l~~sll~l~l~~yp~~~ 360 (788)
++.+. ....|......+..|+.||+.-.+.++....+.+..|+.+.++-+ ++||+.+.++|+.+..++|..+
T Consensus 426 v~mI~~c~~~gf~~vl~~r~Lg~~l~~~~p~e~~lssli~evw~~v~~~~n------~qdyv~c~~awv~y~~k~~t~~- 498 (930)
T KOG3682|consen 426 VSMIVQCVAHGFHTVLDLRPLGAYLRKTSPLEEKLSSLITEVWMRVADISN------FQDYVDCCAAWVSYITKYYTLK- 498 (930)
T ss_pred HHHHHHhhhcCchhhHhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHHHHH-
Confidence 99997 577789999999999999998888776667889999999999864 9999999999999999999998
Q ss_pred hhHHHHHHHHHHHHhccccccccCCchhHHHHHHHHHHHHHhhhhHHHHhccCCcHHHHhccCchh-hHHHHHHHHHHHH
Q psy12283 361 DYIDKILQTTVETFQKLNIERVEYNTPVSRELMRLLKIFIDQYNNILTVIQLTYFAPLMELFDFYG-RKSVSAYLITNAL 439 (788)
Q Consensus 361 ~~vd~il~~~~~~l~~~~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~~f~~ll~~l~~~~-r~~va~~Il~~~l 439 (788)
+||++|++++.++... ...++.+..|+.++..-++||.|.+.++.+++|.+++|++.+++ |..|++.|++.+.
T Consensus 499 -ev~~iL~dV~~~~r~d-----~~~ee~~a~Lq~II~k~l~Hf~d~~~i~~~n~Fi~ilDl~~~~~~~tsvc~~il~~f~ 572 (930)
T KOG3682|consen 499 -EVTKILEDVLVRLRID-----DQTEENTALLQNIIAKFLEHFSDCLDIVTSNSFIKILDLIGYDIQSTSVCSRILEIFS 572 (930)
T ss_pred -HHHHHHHHHHHHcCch-----hccchhhHHHHHHHHHHHHHHhhHHHHhhHhhHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 9999999999999863 23456778899999999999999999999999999999999966 8999999999999
Q ss_pred cCC-CCcCCHHHHHHHHHHhhhhccCCCCCCCCCCChhhHHHHHHHHHHHHhhhc-CCCHHHHHHHHHHHHHHHhcCCCc
Q psy12283 440 NND-TLVPTSESVDSILTIVSSLVQDQDDQPAEEEDPEDFAEEQGLLGRLVHQFK-SDVPDQQYLILSTARKHFQAGGKK 517 (788)
Q Consensus 440 ~~~-~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~~d~~~~~~eq~lv~r~ihli~-~~d~e~q~~~l~~~R~~f~~gg~~ 517 (788)
++. ++|+|+..++.|++.|++|++ ..+..+.++ +-+..-.+||+|+.+++ |.|+|+|++|+++||..|++..+
T Consensus 573 k~~~~~i~D~~~~q~L~evc~tl~d-a~~~~~~ed---~kR~~s~LI~~f~~mVdfg~~~eq~L~f~vecRe~f~~~~~- 647 (930)
T KOG3682|consen 573 KTFTHTISDISACQFLIEVCRTLCD-AYRLEESED---VKRAASQLICSFLSMVDFGTNLEQCLEFIVECREDFGLRQN- 647 (930)
T ss_pred hcCCcccccHHHHHHHHHHHHHHHH-Hhhhhhhhh---hHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhcCchH-
Confidence 864 589999999999999999994 445544443 22677899999999999 99999999999999999998766
Q ss_pred cccccchHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHh----ccccchhHHHHHHHHHHHhcccCCCch
Q psy12283 518 RIKHTLPPLVFQAYQLATQFSALREEDEMWSKKCSKIFRFCHQIILSLI----KAELAELPLRLFLQGAMTIGSIDFENH 593 (788)
Q Consensus 518 ri~~tlp~LV~~~~~L~~~~~~~~~~~~~~~~~~~k~f~fv~~~I~~l~----~~~~~~l~lkLyLq~A~~Ad~~~~~~~ 593 (788)
.+..||.+.++||.+..+. .||...||+.||+.+. +...|..+++|||++|++|-..| +
T Consensus 648 ----~li~LI~S~n~la~~t~K~----------gkK~a~Fvr~Cia~~~~TIPSv~~p~~rlnlyl~~~qvaLl~~---~ 710 (930)
T KOG3682|consen 648 ----SLIHLIESLNQLAHRTQKS----------GKKKADFVRVCIANLSLTIPSVRDPSRRLNLYLQNIQVALLAN---F 710 (930)
T ss_pred ----HHHHHHHHHHHHHHHHHHh----------hhhHHHHHHHHHHHhheecccccChhhHhhhhhHHhHHHHHhC---h
Confidence 7888999999999887642 4788999999999876 34568999999999999999988 7
Q ss_pred hHhHHHHHHHHHHhhhhcc-cchH--HHHHHHHHHHHHhhhhcCCCccC
Q psy12283 594 ETISYEFISQALSLYEEEI-SESK--CQLAAITLLVGTFEKMSCFGEEN 639 (788)
Q Consensus 594 ~~iayeF~~qAf~iyEe~i-~dS~--~Q~~al~~ii~tl~~~~~~~~e~ 639 (788)
-+.+.+|+..|++..+|-. .|-+ .-...+.-.|.-+.++-.|-++|
T Consensus 711 lsq~d~~~~~aIeyl~ev~ltdG~ks~~~~~~~~~ic~f~StL~~~P~n 759 (930)
T KOG3682|consen 711 LSQMDMSSVRAIEYLDEVSLTDGPKSSVCATVSPLICQFLSTLSFCPEN 759 (930)
T ss_pred hhhHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHHHHHheeCCCC
Confidence 9999999999999998654 3433 23344444555555554443333
No 4
>KOG1107|consensus
Probab=99.61 E-value=1.1e-15 Score=173.61 Aligned_cols=299 Identities=8% Similarity=-0.109 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHhhHHHHHHHHHHhhCCCCchhhHHHHHHhcchhhHHHHHHHHHHHH
Q psy12283 38 LMDALKHASTMLSELRTSLLSPKNYYELYMAVTDELRQLELYLVDEFQRGRKVPDLYELVQYAGNIVPRLYLLITVALVY 117 (788)
Q Consensus 38 L~~aLkhas~mL~ELRts~LsPk~YYeLYm~v~d~L~~L~~~l~d~~~~g~~l~dLYE~VQyagnIlPRLYLmItVG~~y 117 (788)
.+.++++++.+..+.++.-+.|+.|++.|++..+|...|..++.++.-++..+.++|+.+++.+++-|+||..|+++-.+
T Consensus 148 d~~~Fvl~NF~EMNKLWVRmQHqGp~re~ekrekER~ELriLVG~nLvrLsQle~~~~~mY~~~vLp~iLEQvV~CrD~l 227 (760)
T KOG1107|consen 148 DAVEFVLINFTEMNKLWVRMQHQGPSREKEKREKERNELRILVGKNLVRLSQLEGVDLEMYRDDVLPRILEQVVNCRDEL 227 (760)
T ss_pred hHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHHHhhhHHHHHHhccccHHHHhccccHHHHHHHHhhhHHH
Confidence 56688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHHhhcccchhHHHHHHHHHHHhchhcCCCCCCCCCCCCCCchhhhHHHHHHhHHHHHHHHHHhh
Q psy12283 118 IKTNSSLKRDLLKDLVEMCRGVQHPLRGLFLRNYLLQCTRNVLPDTPEDEGDQAEGTVRDSVDFILMNFAEMNKLWVRMQ 197 (788)
Q Consensus 118 i~~~~~p~~eiLkDLvEMcRGVQhPlRGLFLR~YL~q~~k~~LPd~~~~~~~~~~g~v~dsi~FlL~NF~EMNKLWVRmQ 197 (788)
.+.--..+.....+...||+|++||++|.+.+++..++++-++|..+.-......++-.|+
T Consensus 228 aQeYLmeciiQvF~DefHLqTLd~~L~ac~~L~~~V~i~~~l~~l~dRLs~y~t~~~e~~p------------------- 288 (760)
T KOG1107|consen 228 AQEYLMECIIQVFPDEFHLQTLDTLLGACPQLQPSVNIKILLIALVDRLSNYATSENEVLP------------------- 288 (760)
T ss_pred HHHHHHHHhhhccCcHHHHHhHHHHHHHHHhcCCCcchHHHHHHHhhhhhHHHhccccCCc-------------------
Confidence 9998888889999999999999999999999999999999988875311100111111111
Q ss_pred ccCCChhHHHHHHHHHHHHHHHhhhhhhhhcccCCCHHHHhhhhhhhHHHHHHhhhhhhhhHHHHhhchhccChhhHHHh
Q psy12283 198 HQGHSRDKERREREREELRILVGTNLVRLSELDSITRDKYKKLVLPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLAT 277 (788)
Q Consensus 198 hqg~~rer~kr~~ER~eL~iLVG~nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~C~D~lAQeYLmd~IIQvFPdefHl~T 277 (788)
+..+++|+++++.++.+++...-|.-...-..|.+.+.|.+..+++|.+|++.||||+
T Consensus 289 ----------------~~~~~~~f~~~~~~~~~vi~~r~dmpl~~~v~L~~sll~~~l~~ypdr~dy~dqvf~~------ 346 (760)
T KOG1107|consen 289 ----------------APLQMEAFEKLSNAITKVIQSRPDMPLDDIVTLYVSLLNFTLKCYPDRLDYADQVFQG------ 346 (760)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHHHHHHHhhHhhcCchHHHHHHHccC------
Confidence 5778899999999999999988899888889999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCHHHHHHHHHHHHhhhhhccchhchHHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHHHHHHHcC
Q psy12283 278 LTAFLKSCAELQAGVNVKNILIALIDRLSLYAQKNKEFNSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYP 357 (788)
Q Consensus 278 L~~lL~~~~~l~~~V~i~~Il~~Li~RL~~y~~~~~~~~~lf~~f~~~i~~l~~~~~~l~l~d~i~l~~sll~l~l~~yp 357 (788)
+.|. ..++.- ....|.-..+.+..+. +++.|..+-..++++++..+++
T Consensus 347 -----~~~~----------------~~~s~~------~~~~~s~~~k~l~~~L-----~~p~~~y~nvvtll~L~~~~~v 394 (760)
T KOG1107|consen 347 -----GSCI----------------NQLSST------GKLADSPVTKELVALL-----SAPLEKYKNVLTLLKLSNYPKV 394 (760)
T ss_pred -----CCcc----------------cccCcc------ccccccHHHHHHHHHH-----cchHHHHHhHHHHHHhhccCch
Confidence 1111 111100 1112222223333333 3577888888899999988877
Q ss_pred CchhhHH-HHHHHHHHHHhccccccccCCchhHHHHHHHHHHHHHhhhhHHHHhccCCcHHHH
Q psy12283 358 DKVDYID-KILQTTVETFQKLNIERVEYNTPVSRELMRLLKIFIDQYNNILTVIQLTYFAPLM 419 (788)
Q Consensus 358 ~~~~~vd-~il~~~~~~l~~~~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~~f~~ll 419 (788)
.+ +.| .....++..+...-+ .+...... ...|-+.|+.++++++..++++..
T Consensus 395 ~~--~~D~~~~~~ma~~i~q~~l---~~~t~~~t-----~d~v~~l~~li~~likd~~~~~~~ 447 (760)
T KOG1107|consen 395 ME--YLDYETRKNMASYIVQSIL---ENNTVIST-----ADEVDSLFSLISGLIKDQDGQSAD 447 (760)
T ss_pred hH--HhchHHHHHHHHHHHHHHH---hhcceeeh-----HhhHHHHHHHHHHHHhcCCCCCcc
Confidence 73 443 333444444432211 11110000 113445566677778888888775
No 5
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=47.36 E-value=2e+02 Score=31.91 Aligned_cols=88 Identities=14% Similarity=0.202 Sum_probs=57.5
Q ss_pred CCCCCHHhHHHHHHHHHHHHHHHcCCc-hhhHHHHHHHHHHHHhccccccccCCchhHHHHHHHHHHHHHhhhhHHHHhc
Q psy12283 333 RIDMPAEDIVALQVSLINLALKCYPDK-VDYIDKILQTTVETFQKLNIERVEYNTPVSRELMRLLKIFIDQYNNILTVIQ 411 (788)
Q Consensus 333 ~~~l~l~d~i~l~~sll~l~l~~yp~~-~~~vd~il~~~~~~l~~~~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~ 411 (788)
.|+.---++++++.++++=.-...++. ..-++.+|+.+...+.+ +......+....-++|...+.++.+ .+++
T Consensus 84 ~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~----d~~~yPe~r~~ff~LL~~i~~~~f~--~l~~ 157 (319)
T PF08767_consen 84 VPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINK----DFEEYPEHRVNFFKLLRAINEHCFP--ALLQ 157 (319)
T ss_dssp -GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSS----TSSSSHHHHHHHHHHHHHHHHHHTH--HHHH
T ss_pred CccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh----hhhhChHHHHHHHHHHHHHHHHhHH--HHHc
Confidence 333334678888888887777666665 33447777777777753 2344567888899999999987743 4455
Q ss_pred c--CCcHHHHhccCchh
Q psy12283 412 L--TYFAPLMELFDFYG 426 (788)
Q Consensus 412 l--~~f~~ll~~l~~~~ 426 (788)
+ +.|..+++.+-|..
T Consensus 158 lp~~~f~~~idsi~wg~ 174 (319)
T PF08767_consen 158 LPPEQFKLVIDSIVWGF 174 (319)
T ss_dssp S-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 5 44777777666543
No 6
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=47.08 E-value=2.3e+02 Score=30.71 Aligned_cols=39 Identities=21% Similarity=0.170 Sum_probs=28.0
Q ss_pred HhcCCCCCHHhHHHHHHHHHHHHHHHcCCchhhHHHHHH
Q psy12283 330 VQSRIDMPAEDIVALQVSLINLALKCYPDKVDYIDKILQ 368 (788)
Q Consensus 330 ~~~~~~l~l~d~i~l~~sll~l~l~~yp~~~~~vd~il~ 368 (788)
+...|++++..|+++.+++=..+..++.+-+.-||..|+
T Consensus 193 iA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk 231 (258)
T PF03000_consen 193 IAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLK 231 (258)
T ss_pred hcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHH
Confidence 456789999999999998877777655444444444444
No 7
>KOG1991|consensus
Probab=40.30 E-value=9.2e+02 Score=31.02 Aligned_cols=24 Identities=13% Similarity=0.410 Sum_probs=19.7
Q ss_pred CCCcCCHHHHHHHHHHhhhhccCC
Q psy12283 442 DTLVPTSESVDSILTIVSSLVQDQ 465 (788)
Q Consensus 442 ~~~i~~~~~v~~ll~~~~~L~~d~ 465 (788)
++-.+.+.-.+.++++|+.++.+.
T Consensus 715 ~~~~s~~~y~~il~~i~~~~l~~e 738 (1010)
T KOG1991|consen 715 PSLLSNPDYLQILLEIIKKVLTSE 738 (1010)
T ss_pred hhhhccchHHHHHHHHHHHHHcCC
Confidence 445788888999999999999654
No 8
>KOG0889|consensus
Probab=38.95 E-value=1.3e+03 Score=34.16 Aligned_cols=110 Identities=18% Similarity=0.340 Sum_probs=68.6
Q ss_pred HhhchhccChhhHHHhHH---HHHHHHhccccCCCHHHHHHHHHHHHhhhhh-ccch----hchHHHHHHHHHHHHHhcC
Q psy12283 262 MECIIQVFPDEFHLATLT---AFLKSCAELQAGVNVKNILIALIDRLSLYAQ-KNKE----FNSLFETFSEQVASIVQSR 333 (788)
Q Consensus 262 md~IIQvFPdefHl~TL~---~lL~~~~~l~~~V~i~~Il~~Li~RL~~y~~-~~~~----~~~lf~~f~~~i~~l~~~~ 333 (788)
+.+++.+-|.++....+. .+++.|.+- ...++...+..++.|+-.-.+ ..++ ...++..+++.+.++.+..
T Consensus 1958 l~~v~~~~~~~~i~~n~~~vq~~le~cl~~-~~~~v~~~~~~~l~~~~~~~~~~~~e~e~~~~~v~~~i~~~l~s~~~~~ 2036 (3550)
T KOG0889|consen 1958 LSVVLENVPKEWIRENLNQIQALLEKCLKS-GNLKVTEALNQLLSRLLSIFPNTHESLELLYQVVSKLIDELLTSVTTVP 2036 (3550)
T ss_pred HHHHHhcCCcHHHHHhHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHhcCCCchhHHHHhhHHHHHHHhhhhheeccc
Confidence 667777778888766554 556666644 556677777777776654333 1111 4568888999998887643
Q ss_pred CCCCHHhHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhcc
Q psy12283 334 IDMPAEDIVALQVSLINLALKCYPDKVDYIDKILQTTVETFQKL 377 (788)
Q Consensus 334 ~~l~l~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~ 377 (788)
.. . ...+.+.+-+.-.+..++.+++|.++....+-+.+.
T Consensus 2037 ~~----~-~~~~~~~~~~l~~~~~~~~~~~drLl~~~~r~~~k~ 2075 (3550)
T KOG0889|consen 2037 LQ----L-ASNVFGTLTLLKTLCSNNPDYLDRLLPGFMRCFSKA 2075 (3550)
T ss_pred cc----c-hHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 22 2 222223444555566677778998888766665543
No 9
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.50 E-value=1.9e+02 Score=30.79 Aligned_cols=64 Identities=20% Similarity=0.343 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhc-CCccccHHHHHHHHHHHHHHhhhc
Q psy12283 685 GKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEK-KNEHITVAMLNQLIGKIRDELANL 749 (788)
Q Consensus 685 ~krVleCLqkalkiA~~~~d~~~~~~LfieiLn~~ly~~~~-~~~~vt~~~in~Li~lI~~~~~~l 749 (788)
.++..+|+++|+.+|..++.|...+.|= =+||..++||+. |.+.--.+....-++.--.++.++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLg-l~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l 206 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLG-LALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTL 206 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHH-HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccc
Confidence 4789999999999999998777666553 378999999984 443222233333333333344443
No 10
>KOG1422|consensus
Probab=33.19 E-value=46 Score=34.92 Aligned_cols=72 Identities=25% Similarity=0.346 Sum_probs=50.0
Q ss_pred HHHHHHHhhHHHHHHHHHHhhC----CC--CchhhHHHHHHhcchhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhc
Q psy12283 65 LYMAVTDELRQLELYLVDEFQR----GR--KVPDLYELVQYAGNIVPRLYLLITVALVYIKTNSSLKRDLLKDLVEMCRG 138 (788)
Q Consensus 65 LYm~v~d~L~~L~~~l~d~~~~----g~--~l~dLYE~VQyagnIlPRLYLmItVG~~yi~~~~~p~~eiLkDLvEMcRG 138 (788)
++...+++|+.|.+||...+.+ |- .++|+ +++||||-+=+++.-|.-- +.|. + -+|
T Consensus 124 ~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDc--------sLlPKL~~i~va~k~yk~~-~IP~-~--------lt~ 185 (221)
T KOG1422|consen 124 LEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADC--------SLLPKLHHIKVAAKHYKNF-EIPA-S--------LTG 185 (221)
T ss_pred HHHHHHHHHHHHHHHhcCccCCccccCCeeeeehh--------hhchhHHHHHHHHHHhcCC-CCch-h--------hhH
Confidence 3567888999999999975432 42 57898 9999999999999888632 3443 1 256
Q ss_pred ccchhHHHHHHHHHHH
Q psy12283 139 VQHPLRGLFLRNYLLQ 154 (788)
Q Consensus 139 VQhPlRGLFLR~YL~q 154 (788)
|-.=+.++|.|-=+-+
T Consensus 186 V~rYl~~~ya~d~F~~ 201 (221)
T KOG1422|consen 186 VWRYLKNAYARDEFTN 201 (221)
T ss_pred HHHHHHHHHhHHHhhc
Confidence 6666666666654433
No 11
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=33.07 E-value=3.1e+02 Score=25.27 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=44.9
Q ss_pred hhhhhhcccCCCHHHHhhhhhhhHHHHHHhhhhhhhhHHHHhhchhccChhhHH
Q psy12283 222 NLVRLSELDSITRDKYKKLVLPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHL 275 (788)
Q Consensus 222 nLvrLSqLegv~~~~Y~~~iLP~iLeqIv~C~D~lAQeYLmd~IIQvFPdefHl 275 (788)
.+..+.--+|-+++.|-..+-- |..++-.|+.++.-+.+...|+..+|++|+-
T Consensus 31 ~l~~~k~~~~~sv~~y~~~~~~-i~~~L~~~g~~i~d~~~v~~iL~~Lp~~y~~ 83 (119)
T PF14223_consen 31 QLENLKMKDGESVDEYISRLKE-IVDELRAIGKPISDEDLVSKILRSLPPSYDT 83 (119)
T ss_pred HHHHHHhcccccHHHHHHHHHH-hhhhhhhcCCcccchhHHHHHHhcCCchhHH
Confidence 3445555578899999998775 7799999999999999999999999999973
No 12
>KOG1410|consensus
Probab=30.61 E-value=1.1e+03 Score=29.22 Aligned_cols=99 Identities=13% Similarity=0.244 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHHHHHHHc--CCchhhHHHHHHHHHHHHhccccccccCCchhHHHHH
Q psy12283 316 NSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCY--PDKVDYIDKILQTTVETFQKLNIERVEYNTPVSRELM 393 (788)
Q Consensus 316 ~~lf~~f~~~i~~l~~~~~~l~l~d~i~l~~sll~l~l~~y--p~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~~~~l~ 393 (788)
-...+.|.+. ..+-|....+..++|++.+...-...| |++-.|+.++.+.+.+++.+-+ .-++...+.+.+
T Consensus 254 ~stlqlfFdl----y~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np~---~LsD~~nyHeFC 326 (1082)
T KOG1410|consen 254 SSTLQLFFDL----YHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENPQ---GLSDPANYHEFC 326 (1082)
T ss_pred chHHHHHHHH----hccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCc---CCCCcchHHHHH
Confidence 3455566664 444455455788888888887766666 4456789999999999998643 123556788999
Q ss_pred HHHHHHHHhhhhHHHHhccCCcHHHHhcc
Q psy12283 394 RLLKIFIDQYNNILTVIQLTYFAPLMELF 422 (788)
Q Consensus 394 ~lL~~pl~~~~~~~~vl~l~~f~~ll~~l 422 (788)
++|..--.+|. +-.+.+++.|+..+.+.
T Consensus 327 RllaRlktNYQ-L~ELv~v~~Y~e~irLi 354 (1082)
T KOG1410|consen 327 RLLARLKTNYQ-LGELVKVECYPEVIRLI 354 (1082)
T ss_pred HHHHHHHhhhh-hHhhhccCCcHHHHHHH
Confidence 99988778885 77888999999987554
No 13
>PLN03217 transcription factor ATBS1; Provisional
Probab=30.39 E-value=88 Score=28.23 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=35.7
Q ss_pred CCccccHHHHHHHHHHHHHHhhhcccch--hhHHHHHHHHHHHHHHHhcc
Q psy12283 726 KNEHITVAMLNQLIGKIRDELANLESNE--ETEQISKHFTNTLFHLRNRQ 773 (788)
Q Consensus 726 ~~~~vt~~~in~Li~lI~~~~~~l~~~~--~~~~~~~~~~~t~~~i~~~~ 773 (788)
|...||.+-|+.||...+.-+....... ......+-.+.|+.||+...
T Consensus 13 ~s~risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLh 62 (93)
T PLN03217 13 GTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLH 62 (93)
T ss_pred CCCCCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHH
Confidence 4457999999999999998887754311 12344568999999999753
No 14
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=30.34 E-value=6.9e+02 Score=26.54 Aligned_cols=142 Identities=11% Similarity=0.174 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhccccccccCCchhHHHHHHHHHHHHHhhhhHHHHhccCCcHHHHhccCchhhHHHHHHHHHHHHcC-CC
Q psy12283 365 KILQTTVETFQKLNIERVEYNTPVSRELMRLLKIFIDQYNNILTVIQLTYFAPLMELFDFYGRKSVSAYLITNALNN-DT 443 (788)
Q Consensus 365 ~il~~~~~~l~~~~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~~f~~ll~~l~~~~r~~va~~Il~~~l~~-~~ 443 (788)
.+++.|.+.+...+ + ......++..+|..=+.+| |...=.+++..+++.+-+. ..
T Consensus 7 ~v~~~~l~~l~~~~---l--~~k~~~dii~~L~~El~~l-------------------p~~~Lv~l~~~~v~~i~~g~~~ 62 (223)
T PF14675_consen 7 KVYKCCLKLLESGD---L--SEKQASDIIGRLMLELHSL-------------------PGEHLVELAELCVDSIRSGDNK 62 (223)
T ss_dssp HHHHHHHHHHHHS--------HHHHHHHHHHHHHHGGG---------------------HHHHHHHHHHHHHHHHS---S
T ss_pred HHHHHHHHHcccCC---c--CHHHHHHHHHHHHHhcCCC-------------------CHHHHHHHHHHHHHHHHcCCcc
Confidence 45667777776533 1 3345555665554433333 3344467888888776432 22
Q ss_pred CcCCHHHHHHHHHHhhhhccCCCCCCCCCCChhhHHHH-----------HHHHHHHHhhhc--CCCHHHHHHHHHHHHHH
Q psy12283 444 LVPTSESVDSILTIVSSLVQDQDDQPAEEEDPEDFAEE-----------QGLLGRLVHQFK--SDVPDQQYLILSTARKH 510 (788)
Q Consensus 444 ~i~~~~~v~~ll~~~~~L~~d~~~~~~~~~d~~~~~~e-----------q~lv~r~ihli~--~~d~e~q~~~l~~~R~~ 510 (788)
.....+-+=.+|..++.- +.-....++...++|... .+.+..++.+++ .-+.+..-.++..+-+.
T Consensus 63 ~~~~ldLlP~~Ls~L~~~--~~i~~~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfrd~~Ls~~e~~~vv~Kv~~~ 140 (223)
T PF14675_consen 63 NGKWLDLLPKCLSALSAS--ESINYNGGELSGEEYKKQIINSLCSSRWPPQILIQLASMFRDVPLSKEELEFVVEKVLSM 140 (223)
T ss_dssp -STTTTHHHHHHHHHHT---S--SSSS----HHHHHHHHHHHHHHS---TTTHHHHHHHGGGS---HHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcC--cccccccccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 333444444444443322 111111222334444211 122334445554 33566666777778888
Q ss_pred HhcCCCccccccchHHHHHHHHHHHH
Q psy12283 511 FQAGGKKRIKHTLPPLVFQAYQLATQ 536 (788)
Q Consensus 511 f~~gg~~ri~~tlp~LV~~~~~L~~~ 536 (788)
+.+.+.. -+||||++.+.|+.+
T Consensus 141 l~~l~l~----elPpLvyQLL~Lssk 162 (223)
T PF14675_consen 141 LKKLDLQ----ELPPLVYQLLLLSSK 162 (223)
T ss_dssp HTTS-GG----GHHHHHHHHHHHHTT
T ss_pred HhcCChh----hccHHHHHHHHHhhc
Confidence 8887776 899999999999954
No 15
>cd00095 IFab Interferon alpha, beta. Includes also interferon omega and tau. Different from interferon gamma family. Type I interferons(alpha, beta) belong to the larger helical cytokine superfamily, which includes growth hormones, interleukins, several colony-stimulating factors and several other regulatory molecules. All function as regulators of cellular activty by interacting with cell-surface receptors and activating various signalling pathways. Interferons produce antiviral and antiproliferative responses in cells. Receptor specificity determines function of the various members of the family.
Probab=29.85 E-value=2.2e+02 Score=28.39 Aligned_cols=69 Identities=17% Similarity=0.379 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCc--cccHHHHHHHHHHHHHHhhhccc--------c------hhhHHHHHHHHHHHHHHHh
Q psy12283 708 QVQLFIELLNHYIYYFEKKNE--HITVAMLNQLIGKIRDELANLES--------N------EETEQISKHFTNTLFHLRN 771 (788)
Q Consensus 708 ~~~LfieiLn~~ly~~~~~~~--~vt~~~in~Li~lI~~~~~~l~~--------~------~~~~~~~~~~~~t~~~i~~ 771 (788)
.+....|+|++.+-.|..... .-+..-+..+...+...+..|+. + .....+++||++.-.|++.
T Consensus 51 a~~~~~emlqqif~LF~~~~ssa~Wnet~le~fl~~L~~Ql~~Le~C~~~~~~~~~~~~~~~~~l~lk~YF~rI~~yLk~ 130 (152)
T cd00095 51 AASVLHEMLQQIFNIFSTPSSSAAWNETLLESLLNELHQQLNHLETCLEQEMGEEETPGPRNTHLHLRKYFQRIQLYLKE 130 (152)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccchhHHHHHHHHHHHHHHh
Confidence 357778999999999975422 34445566666666655555431 0 1246789999999999999
Q ss_pred cccCC
Q psy12283 772 RQEGP 776 (788)
Q Consensus 772 ~~~~~ 776 (788)
++.++
T Consensus 131 K~YS~ 135 (152)
T cd00095 131 KKYSP 135 (152)
T ss_pred CCCCH
Confidence 97654
No 16
>smart00076 IFabd Interferon alpha, beta and delta. Interferons produce antiviral and antiproliferative responses in cells. They are classified into five groups, all of them related but gamma-interferon.
Probab=27.33 E-value=3e+02 Score=26.26 Aligned_cols=69 Identities=17% Similarity=0.375 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHhhcCCc--cccHHHHHHHHHHHHHHhhhccc--------ch------hhHHHHHHHHHHHHHHHh
Q psy12283 708 QVQLFIELLNHYIYYFEKKNE--HITVAMLNQLIGKIRDELANLES--------NE------ETEQISKHFTNTLFHLRN 771 (788)
Q Consensus 708 ~~~LfieiLn~~ly~~~~~~~--~vt~~~in~Li~lI~~~~~~l~~--------~~------~~~~~~~~~~~t~~~i~~ 771 (788)
.+....|+|++.+-.|..... .-+...+..+...+...+..|+. +. ....+++||++.-.|++.
T Consensus 19 a~~~~~emlqqif~lF~~~~ssa~W~~t~le~~l~~L~~Ql~~Le~Cl~~~~~~~~~~~~~~~~l~lk~YF~rI~~yLk~ 98 (117)
T smart00076 19 AASVIHEMLQQIFNIFSSPSSSAAWNETLLESLLNELHQQLNHLEACLKQEMEEEDTPLPRNTHLALRKYFQRIQLYLKE 98 (117)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccchHHHHHHHHHHHHHHHh
Confidence 356778999999999974422 34445555555555555555431 11 126789999999999999
Q ss_pred cccCC
Q psy12283 772 RQEGP 776 (788)
Q Consensus 772 ~~~~~ 776 (788)
++.++
T Consensus 99 K~YS~ 103 (117)
T smart00076 99 KKYSP 103 (117)
T ss_pred CCCCH
Confidence 87653
No 17
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=26.33 E-value=6.1e+02 Score=28.57 Aligned_cols=94 Identities=15% Similarity=0.306 Sum_probs=68.7
Q ss_pred HHhccccCCCHHHHHHHHHHHHhhhhhccchhchHHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHHHH---------HH
Q psy12283 284 SCAELQAGVNVKNILIALIDRLSLYAQKNKEFNSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLA---------LK 354 (788)
Q Consensus 284 ~~~~l~~~V~i~~Il~~Li~RL~~y~~~~~~~~~lf~~f~~~i~~l~~~~~~l~l~d~i~l~~sll~l~---------l~ 354 (788)
++-.+-|+++...++.-+ --|.+.++++++|++..+.+.+.++-.+..|+..-. -.
T Consensus 41 si~al~~~~~~~~~i~fI---------------VAyQTIsDYLDNLcDrs~~~d~~~Fr~LH~am~dAl~p~a~~~dYY~ 105 (330)
T PF10776_consen 41 SIYALLPGENRDELIRFI---------------VAYQTISDYLDNLCDRSTSLDPKDFRQLHQAMLDALDPGAPLSDYYR 105 (330)
T ss_pred hhhhhcCCccHhhHHHHH---------------HHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHHHcCCCCCcchHHH
Confidence 344567777766555221 258889999999999999999999999999988543 23
Q ss_pred HcCCc--hhhHHHHHHHHHHHHhccccccccCCchhHHHHHHHHH
Q psy12283 355 CYPDK--VDYIDKILQTTVETFQKLNIERVEYNTPVSRELMRLLK 397 (788)
Q Consensus 355 ~yp~~--~~~vd~il~~~~~~l~~~~~~~~~~~~~~~~~l~~lL~ 397 (788)
+||++ -.|+..+.+.|-+.+.. .|+.+.+...+..+..
T Consensus 106 ~~~~~dDGGYL~~LV~tCq~~l~~-----lP~y~~V~~~l~~la~ 145 (330)
T PF10776_consen 106 YRPEQDDGGYLRALVRTCQQVLAQ-----LPSYELVRPYLLELAR 145 (330)
T ss_pred cCCccccChHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHH
Confidence 45555 44899999999988875 5666666666666654
No 18
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=25.16 E-value=1.3e+02 Score=29.87 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhhc-CCCCChhhHHHHHHH----HHhhHHHHHHHHHH
Q psy12283 38 LMDALKHASTMLSELRT-SLLSPKNYYELYMAV----TDELRQLELYLVDE 83 (788)
Q Consensus 38 L~~aLkhas~mL~ELRt-s~LsPk~YYeLYm~v----~d~L~~L~~~l~d~ 83 (788)
-|.-+.---.+|.+||. ..+.|..|-+||+++ |...++|-+|+.+.
T Consensus 95 Wi~~IRalR~~Lr~lrd~gkIdk~~YR~lY~~aKGg~fk~~~~L~~~i~~~ 145 (150)
T COG2147 95 WIKRIRALRRELRKLRDDGKIDKHTYRKLYRMAKGGAFKSKSHLKSYIEEA 145 (150)
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCccccHHHHHHHHHHh
Confidence 34444555568888885 789999999999997 88888888888765
No 19
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=25.07 E-value=3.6e+02 Score=22.36 Aligned_cols=73 Identities=11% Similarity=0.051 Sum_probs=40.7
Q ss_pred hhHHHHHHhhhhccCCCCCCCccccchhHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcCCccccHHHHHHH
Q psy12283 659 DQCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNEHITVAMLNQL 738 (788)
Q Consensus 659 dQcrav~~cshLfW~~~~~~~~~~~d~krVleCLqkalkiA~~~~d~~~~~~LfieiLn~~ly~~~~~~~~vt~~~in~L 738 (788)
+.+.+...=+-.+|.. .+-++-++|++||+++....- + .+-.+..-..|...-|...|...-..+|.+.-
T Consensus 3 ~~a~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~~~~~-~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 3 DTANAYNNLARVYREL--------GRYDEALDYYEKALDIEEQLG-D-DHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHHHT--------T-HHHHHHHHHHHHHHHHHTT-T-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444445555533 368999999999999955542 2 33333334445555555556554445555554
Q ss_pred HHH
Q psy12283 739 IGK 741 (788)
Q Consensus 739 i~l 741 (788)
+++
T Consensus 73 l~i 75 (78)
T PF13424_consen 73 LDI 75 (78)
T ss_dssp HHH
T ss_pred Hhh
Confidence 443
No 20
>KOG2561|consensus
Probab=24.45 E-value=81 Score=36.56 Aligned_cols=28 Identities=43% Similarity=0.450 Sum_probs=22.5
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHhch
Q psy12283 129 LKDLVEMCRGVQHPLRGLFLRNYLLQCTR 157 (788)
Q Consensus 129 LkDLvEMcRGVQhPlRGLFLR~YL~q~~k 157 (788)
+.+|.. .+|=|.|=|+||+|.||+|-..
T Consensus 249 l~Rl~~-lKg~~spEraL~lRL~LLQGV~ 276 (568)
T KOG2561|consen 249 LSRLRS-LKGGQSPERALILRLELLQGVV 276 (568)
T ss_pred hHhhhh-ccCCCChhHHHHHHHHHHHHHH
Confidence 445554 6899999999999999999543
No 21
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=21.66 E-value=6.6e+02 Score=26.51 Aligned_cols=110 Identities=18% Similarity=0.317 Sum_probs=58.8
Q ss_pred HHhhchhccChhhHHHhHHHHHHHHhccccC----CCHHHHHHHHHHHHhhhhhccchhchHHHHHHHHHHHHHhcCCCC
Q psy12283 261 LMECIIQVFPDEFHLATLTAFLKSCAELQAG----VNVKNILIALIDRLSLYAQKNKEFNSLFETFSEQVASIVQSRIDM 336 (788)
Q Consensus 261 Lmd~IIQvFPdefHl~TL~~lL~~~~~l~~~----V~i~~Il~~Li~RL~~y~~~~~~~~~lf~~f~~~i~~l~~~~~~l 336 (788)
++..+.+.||+.|+ +||.++.....+ +++...+...|+++-. .+.+... ....+.
T Consensus 105 ~~~~v~~~y~~k~~-----~FL~~i~~~~~~~~~~~d~~~~i~~~I~~f~r-------------~~~~~~s---~~~e~~ 163 (219)
T PF14677_consen 105 ILSTVCQRYPDKFS-----QFLSAIDMTDDNAEEEKDLTERIQFQIRQFQR-------------ELENFLS---SEEEDF 163 (219)
T ss_dssp HHHHHHHTSGGGHH-----HHHHHTS----STTTT-HHHHHHHHHHHHHHH-------------HHHHHHH---S--SS-
T ss_pred HHHHHHHHhhHHHH-----HHHHHhccccCCccccccHHHHHHHHHHHHHH-------------HHhhccc---cccccc
Confidence 34556788999875 788877422222 2444444444444321 1111111 222334
Q ss_pred CHHhHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhccccccccCCchhHHHHHHHH
Q psy12283 337 PAEDIVALQVSLINLALKCYPDKVDYIDKILQTTVETFQKLNIERVEYNTPVSRELMRLL 396 (788)
Q Consensus 337 ~l~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~~~~l~~lL 396 (788)
..++++.+++.+-.|+-+.-|+. .+.+.++.-+.+.+++...+ +....+.++++|
T Consensus 164 ~~K~~~~Lv~ils~L~~~l~~~s-~~~~q~~~W~~~~ck~~~l~----d~~~~k~ll~lL 218 (219)
T PF14677_consen 164 NSKEAVLLVNILSQLSDHLDPSS-DQFTQMLSWTLKFCKENSLE----DSSFCKGLLSLL 218 (219)
T ss_dssp -SHHHHHHHHHHHHHTTSS-SSS-SHHHHHHHHHHHHHHS---S-----HHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHhcCCC----cHHHHHHHHHHh
Confidence 56788888777777777777776 45668999999999876531 233455555554
No 22
>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae [].
Probab=21.15 E-value=1.8e+02 Score=26.73 Aligned_cols=36 Identities=25% Similarity=0.440 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhcc-cchhHHHHHHHHHHHhchhcCCCC
Q psy12283 127 DLLKDLVEMCRGV-QHPLRGLFLRNYLLQCTRNVLPDT 163 (788)
Q Consensus 127 eiLkDLvEMcRGV-QhPlRGLFLR~YL~q~~k~~LPd~ 163 (788)
.-|++|.+||..- -..+|.| .-.=|+.+.||.+|+-
T Consensus 24 ~~lk~l~~~~~~~~~~~v~kL-a~lSl~~VFkDIiPgY 60 (95)
T PF07540_consen 24 GSLKRLLKLCESKVDVTVRKL-AILSLLAVFKDIIPGY 60 (95)
T ss_pred HHHHHHHHHHhccchHHHHHH-HHHHHHHHHhhcCCCc
Confidence 3499999999998 4445544 6667888999999975
Done!