Query psy12283
Match_columns 788
No_of_seqs 133 out of 224
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 23:21:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r17_C Vacuolar protein sortin 100.0 8.2E-95 2.8E-99 769.7 28.3 296 477-772 1-298 (298)
2 3ro3_A PINS homolog, G-protein 75.9 37 0.0013 29.1 14.3 119 574-706 8-126 (164)
3 3ro3_A PINS homolog, G-protein 68.4 56 0.0019 27.9 14.9 118 571-702 45-162 (164)
4 3ulq_A Response regulator aspa 53.9 2E+02 0.0069 29.6 26.0 150 577-742 145-294 (383)
5 3gw4_A Uncharacterized protein 48.2 1.6E+02 0.0054 26.7 15.5 123 570-706 61-184 (203)
6 3q15_A PSP28, response regulat 40.9 3.2E+02 0.011 28.1 18.8 150 574-740 140-289 (378)
7 3edt_B KLC 2, kinesin light ch 38.2 2.6E+02 0.0088 26.3 16.7 139 594-745 17-160 (283)
8 3se4_B Interferon omega-1; typ 36.2 89 0.0031 30.5 7.7 68 708-775 58-142 (177)
9 3gw4_A Uncharacterized protein 29.9 3E+02 0.01 24.6 15.6 154 573-744 24-179 (203)
10 3piw_A Type I interferon 2; ze 28.5 1.3E+02 0.0044 28.9 7.3 69 707-775 55-138 (161)
11 3q15_A PSP28, response regulat 28.1 5E+02 0.017 26.5 22.6 234 480-744 11-254 (378)
12 1bl1_A Parathyroid hormone rec 27.6 15 0.00053 25.8 0.4 15 102-116 15-29 (31)
13 1qqe_A Vesicular transport pro 26.5 4.8E+02 0.016 25.8 13.4 115 571-702 33-151 (292)
14 1wu3_I Interferon beta, IFN-be 25.6 1.7E+02 0.0057 28.1 7.5 70 707-776 50-135 (161)
15 1au1_A Interferon-beta; helica 25.1 1.7E+02 0.0058 28.2 7.4 70 707-776 54-140 (166)
16 3ro2_A PINS homolog, G-protein 24.0 4.8E+02 0.016 24.9 23.4 137 594-744 159-295 (338)
17 3nf1_A KLC 1, kinesin light ch 22.3 5.1E+02 0.018 24.7 20.2 156 573-744 67-227 (311)
18 4b4t_O 26S proteasome regulato 21.1 7.5E+02 0.026 26.4 12.7 129 494-631 89-224 (393)
19 3oq3_A IFN-alpha-5, interferon 21.0 1.1E+02 0.0039 29.4 5.3 68 708-775 53-137 (166)
20 3s9d_A Interferon alpha-2; hum 20.6 1.1E+02 0.0036 29.7 5.0 68 708-775 55-139 (168)
21 1b5l_A Interferon TAU; cytokin 20.2 1.7E+02 0.0057 28.4 6.3 71 705-775 50-137 (172)
No 1
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.2e-95 Score=769.69 Aligned_cols=296 Identities=68% Similarity=1.110 Sum_probs=284.9
Q ss_pred hHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHH
Q psy12283 477 DFAEEQGLLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQFSALREEDEMWSKKCSKIFR 556 (788)
Q Consensus 477 ~~~~eq~lv~r~ihli~~~d~e~q~~~l~~~R~~f~~gg~~ri~~tlp~LV~~~~~L~~~~~~~~~~~~~~~~~~~k~f~ 556 (788)
||.+||++|||+||+++++|||+||++|..+|++|++||++|++||+|||||++|+|+++++..++.|+.|+.+++|+|+
T Consensus 1 ef~eeQ~~varliHli~~~d~d~~f~il~~~rk~~~~gg~~Ri~~TlPpLvf~~l~L~r~~~~~~~~d~~~~~~~~kif~ 80 (298)
T 2r17_C 1 DFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFS 80 (298)
T ss_dssp CTTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCccceeecccHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999877778899999999999
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHHhcccCCCchhHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhhcCCC
Q psy12283 557 FCHQIILSLIKAELAELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFG 636 (788)
Q Consensus 557 fv~~~I~~l~~~~~~~l~lkLyLq~A~~Ad~~~~~~~~~iayeF~~qAf~iyEe~i~dS~~Q~~al~~ii~tl~~~~~~~ 636 (788)
|||++|+.|+..+.|+++||||||||++||++||++++++|||||+|||+||||+|+|||+|++||.+|||||+++++|+
T Consensus 81 fv~~~i~~L~~~~~~elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~~f~ 160 (298)
T 2r17_C 81 FAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFS 160 (298)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHccCCC
Confidence 99999999988778999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHhhccCCchhHHHHHHhhhhccCCCCC--CCccccchhHHHHHHHHHHHHHHhhhchhhhHHHHHH
Q psy12283 637 EENAEPIRTQSALAASKLFKKPDQCSGVCTCSHLFWSGKNS--QGEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIE 714 (788)
Q Consensus 637 ~e~y~~L~tk~~~~askLLkK~dQcrav~~cshLfW~~~~~--~~~~~~d~krVleCLqkalkiA~~~~d~~~~~~Lfie 714 (788)
+||||+|+||||+||||||||||||||||+||||||++... +++++||||||+|||||||||||+|||+.++++||||
T Consensus 161 ~enye~L~tk~t~~askLLKK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d~~~~v~Lfve 240 (298)
T 2r17_C 161 EENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIE 240 (298)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhChhhHHHHHHH
Confidence 99999999999999999999999999999999999996543 4557999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCccccHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHhc
Q psy12283 715 LLNHYIYYFEKKNEHITVAMLNQLIGKIRDELANLESNEETEQISKHFTNTLFHLRNR 772 (788)
Q Consensus 715 iLn~~ly~~~~~~~~vt~~~in~Li~lI~~~~~~l~~~~~~~~~~~~~~~t~~~i~~~ 772 (788)
|||+|+|||++||++||++||||||++|++|+.+++++.+.+++++||+||++||+.|
T Consensus 241 ILn~ylyff~~g~~~Vt~~~in~LI~lI~~~l~~~~~~~~~~~~~~~f~~tl~yI~~~ 298 (298)
T 2r17_C 241 ILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR 298 (298)
T ss_dssp HHHHHHHHHTTTCTTSCHHHHHHHHHHHHTTTTSSCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhhhhCCCCcccHHHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998888888999999999999999875
No 2
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=75.92 E-value=37 Score=29.12 Aligned_cols=119 Identities=16% Similarity=0.081 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcccCCCchhHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhhcCCCccCchHHHHHHHHHHhh
Q psy12283 574 PLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASK 653 (788)
Q Consensus 574 ~lkLyLq~A~~Ad~~~~~~~~~iayeF~~qAf~iyEe~i~dS~~Q~~al~~ii~tl~~~~~~~~e~y~~L~tk~~~~ask 653 (788)
....+..-|.+.-..| -.+-|-+.+.+|+.++++ ..+......+...+.........+ +.-.....++...+.+
T Consensus 8 ~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLG---NFRDAVIAHEQRLLIAKE-FGDKAAERIAYSNLGNAYIFLGEF--ETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHH
Confidence 3444445555544444 355666778888877765 344444444444444444333211 1111222222222222
Q ss_pred ccCCchhHHHHHHhhhhccCCCCCCCccccchhHHHHHHHHHHHHHHhhhchh
Q psy12283 654 LFKKPDQCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQCMDMS 706 (788)
Q Consensus 654 LLkK~dQcrav~~cshLfW~~~~~~~~~~~d~krVleCLqkalkiA~~~~d~~ 706 (788)
.-..+.++.+...-+..++.. .+-+...+++++|++++...-++.
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~ 126 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLL--------QDYEKAIDYHLKHLAIAQELKDRI 126 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hCCcHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHccchH
Confidence 222233455555555665543 267899999999999988775543
No 3
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=68.44 E-value=56 Score=27.94 Aligned_cols=118 Identities=9% Similarity=0.062 Sum_probs=66.9
Q ss_pred chhHHHHHHHHHHHhcccCCCchhHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhhcCCCccCchHHHHHHHHH
Q psy12283 571 AELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALA 650 (788)
Q Consensus 571 ~~l~lkLyLq~A~~Ad~~~~~~~~~iayeF~~qAf~iyEe~i~dS~~Q~~al~~ii~tl~~~~~~~~e~y~~L~tk~~~~ 650 (788)
+......+..-|.+....| -.+-|.+++.+|+.++++. .+...+..+...+.........+ +.-.....++...
T Consensus 45 ~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 45 KAAERIAYSNLGNAYIFLG---EFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDY--EKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHH
Confidence 3344455666666666666 5677888899999888753 45554455554444443333211 1111222222222
Q ss_pred HhhccCCchhHHHHHHhhhhccCCCCCCCccccchhHHHHHHHHHHHHHHhh
Q psy12283 651 ASKLFKKPDQCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQC 702 (788)
Q Consensus 651 askLLkK~dQcrav~~cshLfW~~~~~~~~~~~d~krVleCLqkalkiA~~~ 702 (788)
+.+.-..+..+.+...-+.+++.. .+.+...+++++|++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 119 AQELKDRIGEGRACWSLGNAYTAL--------GNHDQAMHFAEKHLEISREV 162 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHTTC
T ss_pred HHHccchHhHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHHHHHh
Confidence 222222344566666666665543 26789999999999998764
No 4
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=53.94 E-value=2e+02 Score=29.57 Aligned_cols=150 Identities=9% Similarity=0.027 Sum_probs=76.2
Q ss_pred HHHHHHHHhcccCCCchhHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhhcCCCccCchHHHHHHHHHHhhccC
Q psy12283 577 LFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFK 656 (788)
Q Consensus 577 LyLq~A~~Ad~~~~~~~~~iayeF~~qAf~iyEe~i~dS~~Q~~al~~ii~tl~~~~~~~~e~y~~L~tk~~~~askLLk 656 (788)
.|..-|.+-...| -.+-|.+++.+|+.++++.-........++..+.........+. .-...-.++...+.+.=.
T Consensus 145 ~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--~A~~~~~~al~~~~~~~~ 219 (383)
T 3ulq_A 145 FFFKMSESYYYMK---QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYE--DAISHFQKAYSMAEAEKQ 219 (383)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHcCC
Confidence 3333344433344 45677888999999998753324545555555544444443221 111112222222222222
Q ss_pred CchhHHHHHHhhhhccCCCCCCCccccchhHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcCCccccHHHHH
Q psy12283 657 KPDQCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNEHITVAMLN 736 (788)
Q Consensus 657 K~dQcrav~~cshLfW~~~~~~~~~~~d~krVleCLqkalkiA~~~~d~~~~~~LfieiLn~~ly~~~~~~~~vt~~~in 736 (788)
.+..+.+...-+.+++.. .+-+.-++++++|++++...-+....... ..+....|+..|+..--.++++
T Consensus 220 ~~~~~~~~~~lg~~y~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~ 288 (383)
T 3ulq_A 220 PQLMGRTLYNIGLCKNSQ--------SQYEDAIPYFKRAIAVFEESNILPSLPQA---YFLITQIHYKLGKIDKAHEYHS 288 (383)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHTTCGGGHHHH---HHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHhhccchhHHHH---HHHHHHHHHHCCCHHHHHHHHH
Confidence 334455555666665543 26788888888888888777652222222 2233333444455444444555
Q ss_pred HHHHHH
Q psy12283 737 QLIGKI 742 (788)
Q Consensus 737 ~Li~lI 742 (788)
..+++.
T Consensus 289 ~al~~~ 294 (383)
T 3ulq_A 289 KGMAYS 294 (383)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 5
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=48.25 E-value=1.6e+02 Score=26.66 Aligned_cols=123 Identities=11% Similarity=-0.043 Sum_probs=71.1
Q ss_pred cchhHHHHHHHHHHHhcccCCCchhHhHHHHHHHHHHhhhhcccchH-HHHHHHHHHHHHhhhhcCCCccCchHHHHHHH
Q psy12283 570 LAELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESK-CQLAAITLLVGTFEKMSCFGEENAEPIRTQSA 648 (788)
Q Consensus 570 ~~~l~lkLyLq~A~~Ad~~~~~~~~~iayeF~~qAf~iyEe~i~dS~-~Q~~al~~ii~tl~~~~~~~~e~y~~L~tk~~ 648 (788)
.+......+..-|.+....| -.+-|.+.+.+|+.+++ ...|.. ....+...+..+......+ +.-.....++.
T Consensus 61 ~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al 134 (203)
T 3gw4_A 61 DHTAEHRALHQVGMVERMAG---NWDAARRCFLEERELLA-SLPEDPLAASANAYEVATVALHFGDL--AGARQEYEKSL 134 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH-HcCccHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHH
Confidence 34444555666666666666 56778889999999988 455333 4444444444444443321 11122222222
Q ss_pred HHHhhccCCchhHHHHHHhhhhccCCCCCCCccccchhHHHHHHHHHHHHHHhhhchh
Q psy12283 649 LAASKLFKKPDQCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQCMDMS 706 (788)
Q Consensus 649 ~~askLLkK~dQcrav~~cshLfW~~~~~~~~~~~d~krVleCLqkalkiA~~~~d~~ 706 (788)
..+.+.=.....+.+...-+.+++... +.....+++++|++++...-++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~ 184 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEK--------NLLEAQQHWLRARDIFAELEDSE 184 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCc--------CHHHHHHHHHHHHHHHHHcCCHH
Confidence 222222223344555566666666432 67889999999999999886654
No 6
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=40.85 E-value=3.2e+02 Score=28.07 Aligned_cols=150 Identities=10% Similarity=0.144 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcccCCCchhHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhhcCCCccCchHHHHHHHHHHhh
Q psy12283 574 PLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASK 653 (788)
Q Consensus 574 ~lkLyLq~A~~Ad~~~~~~~~~iayeF~~qAf~iyEe~i~dS~~Q~~al~~ii~tl~~~~~~~~e~y~~L~tk~~~~ask 653 (788)
.-..|..-|.+--..| -..-|.+++.+|+.+++..-........+...+.........+. .-...-.++...+.+
T Consensus 140 ~a~~~~~lg~~y~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~--~A~~~~~~al~~~~~ 214 (378)
T 3q15_A 140 KAEFHFKVAEAYYHMK---QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYD--KALPHLEAALELAMD 214 (378)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHH
Confidence 3445555555555556 56778888888888887643323334445444444444433221 111112222222222
Q ss_pred ccCCchhHHHHHHhhhhccCCCCCCCccccchhHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcCCccccHH
Q psy12283 654 LFKKPDQCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNEHITVA 733 (788)
Q Consensus 654 LLkK~dQcrav~~cshLfW~~~~~~~~~~~d~krVleCLqkalkiA~~~~d~~~~~~LfieiLn~~ly~~~~~~~~vt~~ 733 (788)
.=..+..+.+...-+.+++.. .+-+.-++++++|++++...-++.. ...+ .+....|+..|...--.+
T Consensus 215 ~~~~~~~~~~~~~lg~~y~~~--------~~~~~A~~~~~~al~~~~~~~~~~~-~~~~---~~la~~~~~~g~~~~A~~ 282 (378)
T 3q15_A 215 IQNDRFIAISLLNIANSYDRS--------GDDQMAVEHFQKAAKVSREKVPDLL-PKVL---FGLSWTLCKAGQTQKAFQ 282 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHCGGGH-HHHH---HHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHhhCChhH-HHHH---HHHHHHHHHCCCHHHHHH
Confidence 212233444555555555432 2577888888899888877655543 2222 233333444454433344
Q ss_pred HHHHHHH
Q psy12283 734 MLNQLIG 740 (788)
Q Consensus 734 ~in~Li~ 740 (788)
++...++
T Consensus 283 ~~~~al~ 289 (378)
T 3q15_A 283 FIEEGLD 289 (378)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 7
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=38.21 E-value=2.6e+02 Score=26.30 Aligned_cols=139 Identities=10% Similarity=0.060 Sum_probs=82.0
Q ss_pred hHhHHHHHHHHHHhhhhccc-chHHHHHHHHHHHHHhhhhcCCCccCchHHHHHHHHHHhhc--cCCchhHHHHHHhhhh
Q psy12283 594 ETISYEFISQALSLYEEEIS-ESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKL--FKKPDQCSGVCTCSHL 670 (788)
Q Consensus 594 ~~iayeF~~qAf~iyEe~i~-dS~~Q~~al~~ii~tl~~~~~~~~e~y~~L~tk~~~~askL--LkK~dQcrav~~cshL 670 (788)
.+-|-++|.+|+.+++.... +......++..+...+.....+ +.-.....++...+.+. -..|+.+++...-+..
T Consensus 17 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 17 RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY--KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccH--HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 45677889999999987664 3344555555554444443322 11122222222233333 3346777777777777
Q ss_pred ccCCCCCCCccccchhHHHHHHHHHHHHHHhhhchh--hhHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHH
Q psy12283 671 FWSGKNSQGEEIRDGKRVLECLKKGVRIASQCMDMS--VQVQLFIELLNHYIYYFEKKNEHITVAMLNQLIGKIRDE 745 (788)
Q Consensus 671 fW~~~~~~~~~~~d~krVleCLqkalkiA~~~~d~~--~~~~LfieiLn~~ly~~~~~~~~vt~~~in~Li~lI~~~ 745 (788)
++... +-+..++++++|++++....++. ..... ..+....|+..|...-..++++..+++.+..
T Consensus 95 ~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 160 (283)
T 3edt_B 95 YGKRG--------KYKEAEPLCKRALEIREKVLGKFHPDVAKQ---LNNLALLCQNQGKAEEVEYYYRRALEIYATR 160 (283)
T ss_dssp HHTTT--------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHH---HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc--------cHHHHHHHHHHHHHHHHHHcCCCChHHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 77542 67899999999999987765432 22222 2344445566676655667777777765443
No 8
>3se4_B Interferon omega-1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens}
Probab=36.23 E-value=89 Score=30.50 Aligned_cols=68 Identities=16% Similarity=0.321 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHhhcCCc--cccHHHHHHHHHHHHHHhhhccc---c----h--------hhHHHHHHHHHHHHHHH
Q psy12283 708 QVQLFIELLNHYIYYFEKKNE--HITVAMLNQLIGKIRDELANLES---N----E--------ETEQISKHFTNTLFHLR 770 (788)
Q Consensus 708 ~~~LfieiLn~~ly~~~~~~~--~vt~~~in~Li~lI~~~~~~l~~---~----~--------~~~~~~~~~~~t~~~i~ 770 (788)
.+....|+|.+.+-.|..... .-+...+..+..-+...++.|+. . + ..-.+++||++.-.|++
T Consensus 58 a~~~l~emlqqif~LF~~~~ssa~W~~t~le~fl~~L~qQl~~Le~Cl~~~~~~~~~~l~~~~~~l~lkkYF~rI~~yLk 137 (177)
T 3se4_B 58 VMSVLHEMLQQIFSLFHTERSSAAWQMTLLDQLHTGLHQQLQHLETCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLK 137 (177)
T ss_dssp HHHHHHHHHHHHHHHHSSTTGGGSSCHHHHHHHHHHHHHHHHHHTTCCCC------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCccccccchhHHHHHHHHHHHHHH
Confidence 467788999999999964433 45566777777777777777653 1 0 11278999999999999
Q ss_pred hcccC
Q psy12283 771 NRQEG 775 (788)
Q Consensus 771 ~~~~~ 775 (788)
.++.+
T Consensus 138 ~K~YS 142 (177)
T 3se4_B 138 EKKYS 142 (177)
T ss_dssp HHTSC
T ss_pred hcCCC
Confidence 98764
No 9
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=29.89 E-value=3e+02 Score=24.61 Aligned_cols=154 Identities=7% Similarity=-0.092 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHhcccCCCchhHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhhcCCCccCchHHHHHHHHHHh
Q psy12283 573 LPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAAS 652 (788)
Q Consensus 573 l~lkLyLq~A~~Ad~~~~~~~~~iayeF~~qAf~iyEe~i~dS~~Q~~al~~ii~tl~~~~~~~~e~y~~L~tk~~~~as 652 (788)
.....+..-|.+.-..| -.+-|-++|.+|+.++++ ..+......++..+.........+ +.-.....++...+.
T Consensus 24 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~ 97 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMD---RFDEARASFQALQQQAQK-SGDHTAEHRALHQVGMVERMAGNW--DAARRCFLEERELLA 97 (203)
T ss_dssp THHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHH
Confidence 34555555666665556 466778889999998874 445555555555544444443221 111222222222222
Q ss_pred hccC-Cc-hhHHHHHHhhhhccCCCCCCCccccchhHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcCCccc
Q psy12283 653 KLFK-KP-DQCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNEHI 730 (788)
Q Consensus 653 kLLk-K~-dQcrav~~cshLfW~~~~~~~~~~~d~krVleCLqkalkiA~~~~d~~~~~~LfieiLn~~ly~~~~~~~~v 730 (788)
+ .. .+ ..+.+...-+.+++.. .+.....+++++|++++...-++...... ..+....|+..|...-
T Consensus 98 ~-~~~~~~~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~la~~~~~~g~~~~ 165 (203)
T 3gw4_A 98 S-LPEDPLAASANAYEVATVALHF--------GDLAGARQEYEKSLVYAQQADDQVAIACA---FRGLGDLAQQEKNLLE 165 (203)
T ss_dssp H-SCCCHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHTTCHHHHHHH---HHHHHHHHHHTTCHHH
T ss_pred H-cCccHHHHHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHhccchHHHHHH---HHHHHHHHHHCcCHHH
Confidence 2 22 23 4566666666666643 26788999999999998876554333222 2344455566676555
Q ss_pred cHHHHHHHHHHHHH
Q psy12283 731 TVAMLNQLIGKIRD 744 (788)
Q Consensus 731 t~~~in~Li~lI~~ 744 (788)
-.+++...+++.+.
T Consensus 166 A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 166 AQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666665543
No 10
>3piw_A Type I interferon 2; zebrafish, interleukin, cytokine; 1.49A {Danio rerio}
Probab=28.54 E-value=1.3e+02 Score=28.92 Aligned_cols=69 Identities=9% Similarity=0.143 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHHHhhcCCc--cccHHHHHHHHHHHHHHhhhc------ccch---h----hHHHHHHHHHHHHHHHh
Q psy12283 707 VQVQLFIELLNHYIYYFEKKNE--HITVAMLNQLIGKIRDELANL------ESNE---E----TEQISKHFTNTLFHLRN 771 (788)
Q Consensus 707 ~~~~LfieiLn~~ly~~~~~~~--~vt~~~in~Li~lI~~~~~~l------~~~~---~----~~~~~~~~~~t~~~i~~ 771 (788)
+.+....|+|.+.+-.|..... .-+...+..+..-+...++.| +.+. + ...+++||+++-.|++.
T Consensus 55 ~a~~~l~emLqqif~LF~~~~ssa~W~et~le~fl~~L~qQl~~L~Cl~~~~~~~~~~~~~l~~~~lkkYF~rI~~yLk~ 134 (161)
T 3piw_A 55 GVAKAVYKIMDHIDVLFANDSYPEAWNKRKVDNFQNIVYRLTKENKCIMRMRAQGTVDDFPARDDALKSYFNKLATLLRN 134 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCTTSCHHHHHHHHHHHHHHHHHHGGGGGSCCCSSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccCcHHHHHHHHHHHHHHHHHhhhhhhHHHhccccCccchhHHHHHHHHHHHHHHHh
Confidence 4567888999999999964432 344555566555555555544 1111 1 23889999999999999
Q ss_pred cccC
Q psy12283 772 RQEG 775 (788)
Q Consensus 772 ~~~~ 775 (788)
++.+
T Consensus 135 K~YS 138 (161)
T 3piw_A 135 KDNS 138 (161)
T ss_dssp TTTC
T ss_pred cCCC
Confidence 8765
No 11
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=28.05 E-value=5e+02 Score=26.51 Aligned_cols=234 Identities=10% Similarity=0.048 Sum_probs=122.9
Q ss_pred HHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhcCCCccccccchHHH--HHHHHHHHHhhh--hhhhh-HHHHHHhhHH
Q psy12283 480 EEQGLLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPPLV--FQAYQLATQFSA--LREED-EMWSKKCSKI 554 (788)
Q Consensus 480 ~eq~lv~r~ihli~~~d~e~q~~~l~~~R~~f~~gg~~ri~~tlp~LV--~~~~~L~~~~~~--~~~~~-~~~~~~~~k~ 554 (788)
+...++...-+.|...|.++=..++.++.+.+.+.... +.+. ++.+...-.... .+... .+........
T Consensus 11 ~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~------~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 11 RVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEED------QDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTEL 84 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCC------HHHHHHHHHHHHHHHHHHHTCCC--------CHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHHHHHHHHhhcCcccccccccchHHH
Confidence 45677777778888888888888888888888765321 1111 111111111100 00000 0000000111
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHHhcccCCCchhHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhhcC
Q psy12283 555 FRFCHQIILSLIKAELAELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSC 634 (788)
Q Consensus 555 f~fv~~~I~~l~~~~~~~l~lkLyLq~A~~Ad~~~~~~~~~iayeF~~qAf~iyEe~i~dS~~Q~~al~~ii~tl~~~~~ 634 (788)
++- |..........+....|..-|......| --+-|-++|.+|..+.++ +.|......+...+........
T Consensus 85 l~~----i~~~~~~~~~~l~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~y~~~~- 155 (378)
T 3q15_A 85 LET----IETPQKKLTGLLKYYSLFFRGMYEFDQK---EYVEAIGYYREAEKELPF-VSDDIEKAEFHFKVAEAYYHMK- 155 (378)
T ss_dssp HHH----HHGGGHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHH----HhccCCCCccHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHcC-
Confidence 111 2111111123445556666777766666 467788889999999874 4565555555555544444433
Q ss_pred CCccCchHHHHHHHHHHhhccCCc-----hhHHHHHHhhhhccCCCCCCCccccchhHHHHHHHHHHHHHHhhhchhhhH
Q psy12283 635 FGEENAEPIRTQSALAASKLFKKP-----DQCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQCMDMSVQV 709 (788)
Q Consensus 635 ~~~e~y~~L~tk~~~~askLLkK~-----dQcrav~~cshLfW~~~~~~~~~~~d~krVleCLqkalkiA~~~~d~~~~~ 709 (788)
+| ..+......|-.+.++. ..+.+...-+..+... .+-...++++++|++++...-++....
T Consensus 156 ----~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 156 ----QT-HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF--------KHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp ----CH-HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----Cc-HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 22 22333344444444432 2344433444444432 367899999999999998764443221
Q ss_pred HHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHH
Q psy12283 710 QLFIELLNHYIYYFEKKNEHITVAMLNQLIGKIRD 744 (788)
Q Consensus 710 ~LfieiLn~~ly~~~~~~~~vt~~~in~Li~lI~~ 744 (788)
.-..|....|+..|...--.++.+..+++.+.
T Consensus 223 ---~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 254 (378)
T 3q15_A 223 ---ISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254 (378)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 12234455556666665566677776665544
No 12
>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1
Probab=27.62 E-value=15 Score=25.83 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=12.3
Q ss_pred chhhHHHHHHHHHHH
Q psy12283 102 NIVPRLYLLITVALV 116 (788)
Q Consensus 102 nIlPRLYLmItVG~~ 116 (788)
.+-+|||+|=|||=+
T Consensus 15 e~FeRL~~iYTVGYS 29 (31)
T 1bl1_A 15 EVFDRLGMIYTVGYS 29 (31)
T ss_dssp HHHHSSHHHHHHHHH
T ss_pred HHHhheeeEEEEeee
Confidence 467899999999943
No 13
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=26.45 E-value=4.8e+02 Score=25.77 Aligned_cols=115 Identities=11% Similarity=0.038 Sum_probs=64.9
Q ss_pred chhHHHHHHHHHHHhcccCCCchhHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhhcCCCccCchHHHHHHHHH
Q psy12283 571 AELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALA 650 (788)
Q Consensus 571 ~~l~lkLyLq~A~~Ad~~~~~~~~~iayeF~~qAf~iyEe~i~dS~~Q~~al~~ii~tl~~~~~~~~e~y~~L~tk~~~~ 650 (788)
.+.++.+|-++|.+-...| --+-|-+.|.+|+.+++. ..+......++.-+...+.+.. +|+. +..+-..
T Consensus 33 ~~~A~~~~~~a~~~~~~~g---~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~~~~g-----~~~~-A~~~~~~ 102 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRK---ELNLAGDSFLKAADYQKK-AGNEDEAGNTYVEAYKCFKSGG-----NSVN-AVDSLEN 102 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTT---CTHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTT-----CHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHCC-----CHHH-HHHHHHH
Confidence 5677888888887776666 466777888999988874 3454444455554444444432 2221 1122222
Q ss_pred HhhccCC---c-hhHHHHHHhhhhccCCCCCCCccccchhHHHHHHHHHHHHHHhh
Q psy12283 651 ASKLFKK---P-DQCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQC 702 (788)
Q Consensus 651 askLLkK---~-dQcrav~~cshLfW~~~~~~~~~~~d~krVleCLqkalkiA~~~ 702 (788)
|.++..+ + ..+.+...-+.++... ..+....++|+++|+++....
T Consensus 103 Al~l~~~~g~~~~~a~~~~~lg~~~~~~-------lg~~~~A~~~~~~Al~~~~~~ 151 (292)
T 1qqe_A 103 AIQIFTHRGQFRRGANFKFELGEILEND-------LHDYAKAIDCYELAGEWYAQD 151 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHT-------TCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHh-------hcCHHHHHHHHHHHHHHHHhC
Confidence 2222221 1 1233333444444321 136788999999999987643
No 14
>1wu3_I Interferon beta, IFN-beta; alpha-helix-bundle, cytokine; 2.15A {Mus musculus} SCOP: a.26.1.3 PDB: 1ifa_A
Probab=25.56 E-value=1.7e+02 Score=28.10 Aligned_cols=70 Identities=9% Similarity=0.121 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHhhcCCc--cccHHHHHHHHHHHHHHhhhccc---c-----------hhhHHHHHHHHHHHHHHH
Q psy12283 707 VQVQLFIELLNHYIYYFEKKNE--HITVAMLNQLIGKIRDELANLES---N-----------EETEQISKHFTNTLFHLR 770 (788)
Q Consensus 707 ~~~~LfieiLn~~ly~~~~~~~--~vt~~~in~Li~lI~~~~~~l~~---~-----------~~~~~~~~~~~~t~~~i~ 770 (788)
+.+....|+|++.+-.|..... .-+...+..+...+...++.|+. + ...-.+++||++.-.|++
T Consensus 50 ~a~~~~~emlqqif~LF~~~~ssa~W~~t~le~fl~~L~qQl~~Le~C~~~~~~~~~~l~~~~~~l~lk~YF~rI~~yLk 129 (161)
T 1wu3_I 50 YTAFAIQEMLQNVFLVFRNNFSSTGWNETIVVRLLDELHQQTVFLKTVLEEKQEERLTWEMSSTALHLKSYYWRVQRYLK 129 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCGGGTCCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcCccccccchhHHHHHHHHHHHHHH
Confidence 5567889999999999975433 23445555555555555555421 0 112478999999999999
Q ss_pred hcccCC
Q psy12283 771 NRQEGP 776 (788)
Q Consensus 771 ~~~~~~ 776 (788)
.++.++
T Consensus 130 ~K~YS~ 135 (161)
T 1wu3_I 130 LMKYNS 135 (161)
T ss_dssp HTTTCH
T ss_pred hCCCCH
Confidence 987653
No 15
>1au1_A Interferon-beta; helical cytokine, immune system, cytokine; HET: BGC G6D; 2.20A {Homo sapiens} SCOP: a.26.1.3
Probab=25.07 E-value=1.7e+02 Score=28.20 Aligned_cols=70 Identities=10% Similarity=0.238 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHHHhhcCCc--cccHHHHHHHHHHHHHHhhhccc---------------chhhHHHHHHHHHHHHHH
Q psy12283 707 VQVQLFIELLNHYIYYFEKKNE--HITVAMLNQLIGKIRDELANLES---------------NEETEQISKHFTNTLFHL 769 (788)
Q Consensus 707 ~~~~LfieiLn~~ly~~~~~~~--~vt~~~in~Li~lI~~~~~~l~~---------------~~~~~~~~~~~~~t~~~i 769 (788)
+.+....|+|.+.+-.|..... .-+...+..+...+...++.|+. ....-.+++||++.-.|+
T Consensus 54 ~a~~~~~emlqqif~LF~~~~ssa~W~~t~le~fl~~L~qQl~~Le~C~~~~~~~~~~~l~~~~~~l~lk~YF~rI~~yL 133 (166)
T 1au1_A 54 DAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYL 133 (166)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccchhHHHHHHHHHHHHH
Confidence 5667889999999999974433 33445555555555555555421 112358899999999999
Q ss_pred HhcccCC
Q psy12283 770 RNRQEGP 776 (788)
Q Consensus 770 ~~~~~~~ 776 (788)
+.++.++
T Consensus 134 k~K~yS~ 140 (166)
T 1au1_A 134 KAKEYSH 140 (166)
T ss_dssp HHTTTCH
T ss_pred HhCCCCH
Confidence 9987653
No 16
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=24.01 E-value=4.8e+02 Score=24.92 Aligned_cols=137 Identities=16% Similarity=0.084 Sum_probs=70.6
Q ss_pred hHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhhcCCCccCchHHHHHHHHHHhhccCCchhHHHHHHhhhhccC
Q psy12283 594 ETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFKKPDQCSGVCTCSHLFWS 673 (788)
Q Consensus 594 ~~iayeF~~qAf~iyEe~i~dS~~Q~~al~~ii~tl~~~~~~~~e~y~~L~tk~~~~askLLkK~dQcrav~~cshLfW~ 673 (788)
.+-|.+.+.+|+.+++. ..+......+...+.........+ +.-.....++...+.+.-..+....+...-+.+++.
T Consensus 159 ~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTA-LGDRAAQGRAFGNLGNTHYLLGNF--RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 235 (338)
T ss_dssp HHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 34555666666666553 234444444444444444333321 111122222222222322233344555555555543
Q ss_pred CCCCCCccccchhHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHH
Q psy12283 674 GKNSQGEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNEHITVAMLNQLIGKIRD 744 (788)
Q Consensus 674 ~~~~~~~~~~d~krVleCLqkalkiA~~~~d~~~~~~LfieiLn~~ly~~~~~~~~vt~~~in~Li~lI~~ 744 (788)
. .+.+...++++++++++...-++......+. +....|+..|...=-.++++..+++...
T Consensus 236 ~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 236 L--------GEFETASEYYKKTLLLARQLKDRAVEAQSCY---SLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp H--------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred c--------CCHHHHHHHHHHHHHHHHhhcchhHHHHHHH---HHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 2 2678999999999999887654433333322 3344455667665556677777666544
No 17
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=22.32 E-value=5.1e+02 Score=24.66 Aligned_cols=156 Identities=12% Similarity=0.123 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHhcccCCCchhHhHHHHHHHHHHhhhhccc-chHHHHHHHHHHHHHhhhhcCCCccCchHHHHHHHHHH
Q psy12283 573 LPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEIS-ESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAA 651 (788)
Q Consensus 573 l~lkLyLq~A~~Ad~~~~~~~~~iayeF~~qAf~iyEe~i~-dS~~Q~~al~~ii~tl~~~~~~~~e~y~~L~tk~~~~a 651 (788)
.....+..-|.+....| -.+-|.+.|.+|+.+++.... +......+...+...+.....+ +.-.....++....
T Consensus 67 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~~ 141 (311)
T 3nf1_A 67 DVATMLNILALVYRDQN---KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY--KEAEPLCKRALEIR 141 (311)
T ss_dssp HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHH
Confidence 33455555566666666 466778889999998876543 2333444444444444433221 11112222222222
Q ss_pred hhc--cCCchhHHHHHHhhhhccCCCCCCCccccchhHHHHHHHHHHHHHHhhhch--hhhHHHHHHHHHHHHHHhhcCC
Q psy12283 652 SKL--FKKPDQCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQCMDM--SVQVQLFIELLNHYIYYFEKKN 727 (788)
Q Consensus 652 skL--LkK~dQcrav~~cshLfW~~~~~~~~~~~d~krVleCLqkalkiA~~~~d~--~~~~~LfieiLn~~ly~~~~~~ 727 (788)
.+. -..++.+.+...-+.+++... +-+..+++++++++++.....+ ......+. +....|+..|.
T Consensus 142 ~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~---~la~~~~~~g~ 210 (311)
T 3nf1_A 142 EKVLGKDHPDVAKQLNNLALLCQNQG--------KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKN---NLASCYLKQGK 210 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTT--------CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHH---HHHHHHHHHTC
T ss_pred HHhcCCCChHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHHHHcCC
Confidence 222 233667777777777766442 6789999999999998776422 22222222 23334455566
Q ss_pred ccccHHHHHHHHHHHHH
Q psy12283 728 EHITVAMLNQLIGKIRD 744 (788)
Q Consensus 728 ~~vt~~~in~Li~lI~~ 744 (788)
..=-.++++..++...+
T Consensus 211 ~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 211 FKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 65566777777776554
No 18
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.10 E-value=7.5e+02 Score=26.45 Aligned_cols=129 Identities=12% Similarity=0.028 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcC-----CCccccccchHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhcc
Q psy12283 494 SDVPDQQYLILSTARKHFQAG-----GKKRIKHTLPPLVFQAYQLATQFSALREEDEMWSKKCSKIFRFCHQIILSLIKA 568 (788)
Q Consensus 494 ~~d~e~q~~~l~~~R~~f~~g-----g~~ri~~tlp~LV~~~~~L~~~~~~~~~~~~~~~~~~~k~f~fv~~~I~~l~~~ 568 (788)
..|++.-+++|..+.+.+... .....+-..-+.+..-..+++-+-...+. ..+++...-+...+...-.
T Consensus 89 ~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~-----~~a~~~l~~~~~~l~~~~~- 162 (393)
T 4b4t_O 89 SKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDL-----VKARDLLDDLEKTLDKKDS- 162 (393)
T ss_dssp TTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCH-----HHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHhhhccCC-
Confidence 578888888888766555321 11112223334555555555544332221 1244554444444433322
Q ss_pred ccchhHHHHHHHHHHHhcccCCCchhHhHHHHHHHHHHhhh--hcccchHHHHHHHHHHHHHhhh
Q psy12283 569 ELAELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYE--EEISESKCQLAAITLLVGTFEK 631 (788)
Q Consensus 569 ~~~~l~lkLyLq~A~~Ad~~~~~~~~~iayeF~~qAf~iyE--e~i~dS~~Q~~al~~ii~tl~~ 631 (788)
..+....++|..++..+-.-+ -..-+|..+-+++..|. ++++.+..+..+..+++.+|..
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~---~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~ 224 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKN---DFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLG 224 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcC
Confidence 235678899999988877655 34556666667777776 4566666666777777777754
No 19
>3oq3_A IFN-alpha-5, interferon alpha-5; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Mus musculus} SCOP: a.26.1.3
Probab=21.03 E-value=1.1e+02 Score=29.40 Aligned_cols=68 Identities=16% Similarity=0.361 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCc--cccHHHHHHHHHHHHHHhhhccc------c-h--------hhHHHHHHHHHHHHHHH
Q psy12283 708 QVQLFIELLNHYIYYFEKKNE--HITVAMLNQLIGKIRDELANLES------N-E--------ETEQISKHFTNTLFHLR 770 (788)
Q Consensus 708 ~~~LfieiLn~~ly~~~~~~~--~vt~~~in~Li~lI~~~~~~l~~------~-~--------~~~~~~~~~~~t~~~i~ 770 (788)
.+....|+|.+.+-.|..... .-+...+..+..-+...++.|+. . + ..-.+++||++.-.|++
T Consensus 53 a~~~~~emlqqif~LF~~~~ssa~W~~t~le~fl~~L~qQl~~Le~Cl~~~~~~~~~~l~~~~~~l~lkkYF~rI~~yLk 132 (166)
T 3oq3_A 53 AIPVLSELTQQVLNIFTSKDSSAAWNATLLDSFCNEVHQQLNDLKACVMQQVGVQESPLTQEDSLLAVRKYFHRITVYLR 132 (166)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCccccccchhHHHHHHHHHHHHHH
Confidence 467778899999988864322 34445566666666655555532 0 0 12477999999999999
Q ss_pred hcccC
Q psy12283 771 NRQEG 775 (788)
Q Consensus 771 ~~~~~ 775 (788)
.++.+
T Consensus 133 ~K~YS 137 (166)
T 3oq3_A 133 EKKHS 137 (166)
T ss_dssp HTTTC
T ss_pred hcCCC
Confidence 98765
No 20
>3s9d_A Interferon alpha-2; human, type I interferons, IFNA2, ifnar2, SUB-complex of the interferon signaling complex; 2.00A {Homo sapiens} PDB: 3se3_B* 2lms_A* 1itf_A 2hym_B 2ksx_A 2kz1_A 2lag_A 1rh2_A 3ux9_A
Probab=20.59 E-value=1.1e+02 Score=29.69 Aligned_cols=68 Identities=13% Similarity=0.326 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHhhcCCc--cccHHHHHHHHHHHHHHhhhccc---c----h--------hhHHHHHHHHHHHHHHH
Q psy12283 708 QVQLFIELLNHYIYYFEKKNE--HITVAMLNQLIGKIRDELANLES---N----E--------ETEQISKHFTNTLFHLR 770 (788)
Q Consensus 708 ~~~LfieiLn~~ly~~~~~~~--~vt~~~in~Li~lI~~~~~~l~~---~----~--------~~~~~~~~~~~t~~~i~ 770 (788)
.+....|+|.+.+-.|..... .-+...+..+..-+...++.|+. . + ..-.+++||++.-.|++
T Consensus 55 a~~~l~emlqqif~LF~~~~ssa~W~~t~le~fl~~L~qQl~~Le~Cl~~~~~~~~~~~~~~~~~l~lkkYF~rI~~yLk 134 (168)
T 3s9d_A 55 TIPVLAAMIAQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLK 134 (168)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHSCHHHHHHHHHHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCccccccchhHHHHHHHHHHHHHH
Confidence 467788999999999964332 34445566666666666665532 0 0 11278999999999999
Q ss_pred hcccC
Q psy12283 771 NRQEG 775 (788)
Q Consensus 771 ~~~~~ 775 (788)
.++.+
T Consensus 135 ~K~YS 139 (168)
T 3s9d_A 135 EKKYS 139 (168)
T ss_dssp HTTTC
T ss_pred hcCCC
Confidence 98765
No 21
>1b5l_A Interferon TAU; cytokine; 2.10A {Pichia pastoris} SCOP: a.26.1.3
Probab=20.21 E-value=1.7e+02 Score=28.44 Aligned_cols=71 Identities=15% Similarity=0.267 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhcC--CccccHHHHHHHHHHHHHHhhhccc---c------------hhhHHHHHHHHHHHH
Q psy12283 705 MSVQVQLFIELLNHYIYYFEKK--NEHITVAMLNQLIGKIRDELANLES---N------------EETEQISKHFTNTLF 767 (788)
Q Consensus 705 ~~~~~~LfieiLn~~ly~~~~~--~~~vt~~~in~Li~lI~~~~~~l~~---~------------~~~~~~~~~~~~t~~ 767 (788)
..+.+....|+|.+.+-.|... -..-+...+..+...+...++.|+. + ...-.+++||+++-.
T Consensus 50 k~~a~~v~~emlqqif~LF~~~~ssa~W~~t~le~fl~~L~qQl~~Le~C~~~~~~~~~~~l~~~~~~l~lk~YF~rI~~ 129 (172)
T 1b5l_A 50 KDQAFPVLYEMLQQSFNLFYTEHSSAAWDTTLLEQLCTGLQQQLDHLDTCRGQVMGEEDSELGNMDPIVTVKKYFQGIYD 129 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcccccchhHHHHHHHHHHH
Confidence 3456778899999999999632 2234445566666666665555421 0 112478999999999
Q ss_pred HHHhcccC
Q psy12283 768 HLRNRQEG 775 (788)
Q Consensus 768 ~i~~~~~~ 775 (788)
|++.++.+
T Consensus 130 yLk~K~YS 137 (172)
T 1b5l_A 130 YLQEKGYS 137 (172)
T ss_dssp HHHHTTTC
T ss_pred HHHhCCCC
Confidence 99998765
Done!