Query psy12283
Match_columns 788
No_of_seqs 133 out of 224
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 23:22:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12283.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12283hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qqea_ a.118.8.1 (A:) Vesicul 38.9 1.4E+02 0.01 27.3 13.6 114 572-702 34-151 (290)
2 d1hf8a1 a.7.8.2 (A:150-281) Cl 31.0 1.2E+02 0.009 25.8 9.7 72 297-373 21-108 (132)
3 d2o02a1 a.118.7.1 (A:1-230) ze 30.6 66 0.0048 30.2 8.4 55 685-746 142-196 (230)
4 d1o9da_ a.118.7.1 (A:) 14-3-3- 27.0 60 0.0044 30.6 7.4 44 684-728 146-189 (236)
5 d2o8pa1 a.118.7.1 (A:8-227) 14 26.5 80 0.0058 29.5 8.1 67 684-751 138-205 (220)
6 d1rh2a_ a.26.1.3 (A:) Interfer 25.6 77 0.0056 28.0 7.4 72 705-776 44-132 (154)
7 d1hx8a1 a.7.8.2 (A:167-299) AP 25.2 1.9E+02 0.014 24.5 10.2 72 297-373 18-105 (133)
8 d1wu3i_ a.26.1.3 (I:) Interfer 24.7 96 0.007 27.6 7.9 69 707-775 50-134 (161)
9 d1w53a_ a.186.1.2 (A:) Phospho 21.7 1.7E+02 0.012 23.2 7.9 67 305-378 15-81 (84)
10 d1b5la_ a.26.1.3 (A:) Interfer 19.5 1.3E+02 0.0096 26.6 7.7 70 706-775 51-137 (164)
No 1
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.93 E-value=1.4e+02 Score=27.34 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHhcccCCCchhHhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHhhhhcCCCccCchHHHHHHHHHH
Q psy12283 572 ELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAA 651 (788)
Q Consensus 572 ~l~lkLyLq~A~~Ad~~~~~~~~~iayeF~~qAf~iyEe~i~dS~~Q~~al~~ii~tl~~~~~~~~e~y~~L~tk~~~~a 651 (788)
+-+..+|.++|.+=-..+ --+-|-+.|.+|..+++.. .+...-..++.-+.....++.. ++. +..+...|
T Consensus 34 ~~Aa~~y~~aa~~y~~~~---~~~~A~~~y~kA~~~~~~~-~~~~~~a~~~~~~g~~y~~~~~-----~~~-A~~~~~~a 103 (290)
T d1qqea_ 34 EEAADLCVQAATIYRLRK---ELNLAGDSFLKAADYQKKA-GNEDEAGNTYVEAYKCFKSGGN-----SVN-AVDSLENA 103 (290)
T ss_dssp HHHHHHHHHHHHHHHHTT---CTHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC-----HHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhCC-----cHH-HHHHHHHh
Confidence 667888999888755555 3456678899999998753 3333333344333333333321 221 23333344
Q ss_pred hhccCCc----hhHHHHHHhhhhccCCCCCCCccccchhHHHHHHHHHHHHHHhh
Q psy12283 652 SKLFKKP----DQCSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKGVRIASQC 702 (788)
Q Consensus 652 skLLkK~----dQcrav~~cshLfW~~~~~~~~~~~d~krVleCLqkalkiA~~~ 702 (788)
.++..+. .++.+...-+.++-. ...|.++.++++++|+++....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~A~~~~~~A~~l~~~~ 151 (290)
T d1qqea_ 104 IQIFTHRGQFRRGANFKFELGEILEN-------DLHDYAKAIDCYELAGEWYAQD 151 (290)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHHT
T ss_pred hHHhhhcccchhHHHHHHHHHHhHhh-------HHHHHHHHHHHHHHHHHHHHhc
Confidence 4443333 223333333333211 1237899999999999887654
No 2
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=31.04 E-value=1.2e+02 Score=25.82 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhhhccch----------------hchHHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHHHHHHHcCCch
Q psy12283 297 ILIALIDRLSLYAQKNKE----------------FNSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYPDKV 360 (788)
Q Consensus 297 Il~~Li~RL~~y~~~~~~----------------~~~lf~~f~~~i~~l~~~~~~l~l~d~i~l~~sll~l~l~~yp~~~ 360 (788)
.+..+++||..+.+..+. ...+|..+.+-+.++++...+|+-.|-..-++.+-+++-+ .
T Consensus 21 ~lQ~lld~Ll~c~p~~~~~~n~vi~~A~~llvkds~~lY~~inegiinLLd~fFem~k~da~~al~iykr~~~q-----~ 95 (132)
T d1hf8a1 21 IIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTR-----M 95 (132)
T ss_dssp HHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH-----H
T ss_pred HHHHHHHHHHCCCCccchhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-----H
Confidence 355678888877664332 3567777888888999999999999999888888888875 5
Q ss_pred hhHHHHHHHHHHH
Q psy12283 361 DYIDKILQTTVET 373 (788)
Q Consensus 361 ~~vd~il~~~~~~ 373 (788)
+.+...|+.|-..
T Consensus 96 e~L~~f~~~ck~~ 108 (132)
T d1hf8a1 96 TRISEFLKVAEQV 108 (132)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 7888888877664
No 3
>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}
Probab=30.59 E-value=66 Score=30.19 Aligned_cols=55 Identities=15% Similarity=0.229 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHHHHh
Q psy12283 685 GKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNEHITVAMLNQLIGKIRDEL 746 (788)
Q Consensus 685 ~krVleCLqkalkiA~~~~d~~~~~~LfieiLn~~ly~~~~~~~~vt~~~in~Li~lI~~~~ 746 (788)
.++..+++++|+.+|.+.+.|...+.|= =+||..++||+.-+. ..+-+++.++-+
T Consensus 142 ~~~a~~aY~~A~~~A~~~L~~t~pirLg-L~LN~SVF~YEi~~~------~~~A~~lak~af 196 (230)
T d2o02a1 142 VDQSQQAYQEAFEISKKEMQPTHPIRLG-LALNFSVFYYEILNS------PEKACSLAKTAF 196 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHH-HHHHHHHHHHHTSCC------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHH-HHHhHHHHHHHHcCC------HHHHHHHHHHHH
Confidence 4689999999999999988876665552 369999999985443 244445555443
No 4
>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=26.97 E-value=60 Score=30.64 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=34.9
Q ss_pred chhHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcCCc
Q psy12283 684 DGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNE 728 (788)
Q Consensus 684 d~krVleCLqkalkiA~~~~d~~~~~~LfieiLn~~ly~~~~~~~ 728 (788)
-.++..+++|+|+.+|.+.+.|...+.|= =+||..++||+.-+.
T Consensus 146 ~~~~a~~aY~~A~~~a~~~l~pt~PirLg-LaLN~SVF~yEi~~~ 189 (236)
T d1o9da_ 146 AAESTLTAYKAAQDIATTELAPTHPIRLG-LALNFSVFYYEILNS 189 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCHHHHH-HHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHH-HHHhHHHHHHHHcCC
Confidence 35778999999999999999887666553 368999999986443
No 5
>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}
Probab=26.54 E-value=80 Score=29.47 Aligned_cols=67 Identities=18% Similarity=0.065 Sum_probs=43.1
Q ss_pred chhHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcCCc-cccHHHHHHHHHHHHHHhhhccc
Q psy12283 684 DGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNE-HITVAMLNQLIGKIRDELANLES 751 (788)
Q Consensus 684 d~krVleCLqkalkiA~~~~d~~~~~~LfieiLn~~ly~~~~~~~-~vt~~~in~Li~lI~~~~~~l~~ 751 (788)
+.++..++.++|..+|.+.+.|...+.|= =+||..++|||--+. .---+.-...++--.+.+..++.
T Consensus 138 ~~~~a~~aY~~A~~ia~~~l~pt~PirLG-LaLN~SVF~yEi~~~~~~A~~lAk~A~~~fdeai~~ld~ 205 (220)
T d2o8pa1 138 SLEDSKKIHQDAFTLLCEHPDKIEQLPLG-FIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIKEQEN 205 (220)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGGSCHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCcchHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 45789999999999999988876554442 268999999985444 22222222333333445555554
No 6
>d1rh2a_ a.26.1.3 (A:) Interferon-alpha 2b {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.57 E-value=77 Score=27.96 Aligned_cols=72 Identities=15% Similarity=0.361 Sum_probs=47.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCc--cccHHHHHHHHHHHHHHhhhccc---------------chhhHHHHHHHHHHHH
Q psy12283 705 MSVQVQLFIELLNHYIYYFEKKNE--HITVAMLNQLIGKIRDELANLES---------------NEETEQISKHFTNTLF 767 (788)
Q Consensus 705 ~~~~~~LfieiLn~~ly~~~~~~~--~vt~~~in~Li~lI~~~~~~l~~---------------~~~~~~~~~~~~~t~~ 767 (788)
..+.+....|+|.+.+-.|..... +.+...+..+..-+...+..|+. +...-.+++||++.-.
T Consensus 44 k~~~~~~~~emlqqif~LF~~~~ssa~Wnet~le~fl~~L~~Ql~~Le~Cl~~~~~~~~~~~~~e~~~L~lk~YF~rI~~ 123 (154)
T d1rh2a_ 44 KAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMNEDSILAVRKYFQRITL 123 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcCCCcchHHHHHHHHHHHH
Confidence 344556678999999999964433 34445556666655655555432 0011268999999999
Q ss_pred HHHhcccCC
Q psy12283 768 HLRNRQEGP 776 (788)
Q Consensus 768 ~i~~~~~~~ 776 (788)
|++.++.++
T Consensus 124 yLk~K~yS~ 132 (154)
T d1rh2a_ 124 YLKEKKYSP 132 (154)
T ss_pred HHHhCCCCH
Confidence 999987653
No 7
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=25.19 E-value=1.9e+02 Score=24.54 Aligned_cols=72 Identities=14% Similarity=0.296 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhhhhccch----------------hchHHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHHHHHHHcCCch
Q psy12283 297 ILIALIDRLSLYAQKNKE----------------FNSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYPDKV 360 (788)
Q Consensus 297 Il~~Li~RL~~y~~~~~~----------------~~~lf~~f~~~i~~l~~~~~~l~l~d~i~l~~sll~l~l~~yp~~~ 360 (788)
.+..+++||..+.+..++ ...+|..+.+-+.++++..-+|+-.|-..-++.+-+++-+ .
T Consensus 18 ~lQ~lld~Ll~c~p~~~~~~n~vi~~A~~llvkds~~lY~~inegiinLLd~fFem~k~da~~al~iyk~~~~q-----~ 92 (133)
T d1hx8a1 18 VLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVR-----M 92 (133)
T ss_dssp HHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH-----H
T ss_pred HHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-----H
Confidence 456777888777664332 3567777888888999988899999988888888888765 5
Q ss_pred hhHHHHHHHHHHH
Q psy12283 361 DYIDKILQTTVET 373 (788)
Q Consensus 361 ~~vd~il~~~~~~ 373 (788)
+.+...|+.|-..
T Consensus 93 e~L~~f~~~ck~~ 105 (133)
T d1hx8a1 93 DRVGEFLKVAENV 105 (133)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 7888888877553
No 8
>d1wu3i_ a.26.1.3 (I:) Interferon-beta {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.75 E-value=96 Score=27.55 Aligned_cols=69 Identities=9% Similarity=0.121 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHhhcCCc--cccHHHHHHHHHHHHHHhhhccc--------------chhhHHHHHHHHHHHHHHH
Q psy12283 707 VQVQLFIELLNHYIYYFEKKNE--HITVAMLNQLIGKIRDELANLES--------------NEETEQISKHFTNTLFHLR 770 (788)
Q Consensus 707 ~~~~LfieiLn~~ly~~~~~~~--~vt~~~in~Li~lI~~~~~~l~~--------------~~~~~~~~~~~~~t~~~i~ 770 (788)
+.+...-|+|.+.+-.|..... .-+...+..+..-+...+..|+. +...-.+++||++.-.|++
T Consensus 50 ~a~~v~~emlQqif~LF~~~~ssa~Wnet~le~fl~~L~~Ql~~Le~Cl~~~~~~~~~~~~~~~~L~lkkYF~rI~~yLk 129 (161)
T d1wu3i_ 50 YTAFAIQEMLQNVFLVFRNNFSSTGWNETIVVRLLDELHQQTVFLKTVLEEKQEERLTWEMSSTALHLKSYYWRVQRYLK 129 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCGGGTCCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcchHHHHHHHHHHHHHHH
Confidence 3456668899999999964332 34445566665555655555541 1112258999999999999
Q ss_pred hcccC
Q psy12283 771 NRQEG 775 (788)
Q Consensus 771 ~~~~~ 775 (788)
.++.+
T Consensus 130 ~K~YS 134 (161)
T d1wu3i_ 130 LMKYN 134 (161)
T ss_dssp HTTTC
T ss_pred hCCCC
Confidence 98765
No 9
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=21.65 E-value=1.7e+02 Score=23.21 Aligned_cols=67 Identities=18% Similarity=0.327 Sum_probs=45.6
Q ss_pred HhhhhhccchhchHHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhccc
Q psy12283 305 LSLYAQKNKEFNSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYPDKVDYIDKILQTTVETFQKLN 378 (788)
Q Consensus 305 L~~y~~~~~~~~~lf~~f~~~i~~l~~~~~~l~l~d~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~ 378 (788)
|..|....+ ...++ ...++=.++++. +++|+|++++..+.++ ..+|+..+.+..-|....+.+...|
T Consensus 15 L~~Yl~~~~-E~~Ly-~~~~fsre~iek--~IsPEeIV~iHk~~l~---el~~~~~e~v~~Sfd~LlEVm~gyG 81 (84)
T d1w53a_ 15 LSRYIAELT-ETSLY-QAQKFSRKTIEH--QIPPEEIISIHRKVLK---ELYPSLPEDVFHSLDFLIEVMIGYG 81 (84)
T ss_dssp HHHHHHHCC-HHHHH-HHHHHHHHHHHT--TCCHHHHHHHHHHHHH---HHCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCC-HHHHH-HHHHHHHHHHHc--CCCHHHHHHHHHHHHH---HHCCCChHHHHHHHHHHHHHHHHcC
Confidence 344554332 13344 455555667764 7899999999988765 4678877888888888888776543
No 10
>d1b5la_ a.26.1.3 (A:) Interferon-tau {Sheep (Ovis aries) [TaxId: 9940]}
Probab=19.48 E-value=1.3e+02 Score=26.59 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHHHHHhhcCC--ccccHHHHHHHHHHHHHHhhhccc---------------chhhHHHHHHHHHHHHH
Q psy12283 706 SVQVQLFIELLNHYIYYFEKKN--EHITVAMLNQLIGKIRDELANLES---------------NEETEQISKHFTNTLFH 768 (788)
Q Consensus 706 ~~~~~LfieiLn~~ly~~~~~~--~~vt~~~in~Li~lI~~~~~~l~~---------------~~~~~~~~~~~~~t~~~ 768 (788)
.+.+....|+|++.+-.|.... .+.+...+..+...+...+..|+. +...-.+++||++.-.|
T Consensus 51 ~~a~~~~~emlqqif~LF~~~~s~a~W~~t~le~fl~~L~~Ql~~Le~Cl~~~~~~~~~~~~~~~~~l~lk~YF~rI~~y 130 (164)
T d1b5la_ 51 DQAFPVLYEMLQQSFNLFYTEHSSAAWDTTLLEQLCTGLQQQLDHLDTCRGQVMGEEDSELGNMDPIVTVKKYFQGIYDY 130 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChhccCHHHHHHHHHHHHHHHHHHHHHHHHHccccccCcCCccchHHHHHHHHHHHHH
Confidence 4556677899999998885322 234445555555555555555431 01123689999999999
Q ss_pred HHhcccC
Q psy12283 769 LRNRQEG 775 (788)
Q Consensus 769 i~~~~~~ 775 (788)
++.++.+
T Consensus 131 Lk~K~yS 137 (164)
T d1b5la_ 131 LQEKGYS 137 (164)
T ss_dssp HHHTTTC
T ss_pred HHhCCCC
Confidence 9998754
Done!