RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12283
(788 letters)
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport,
membrane, phosphorylation; 2.80A {Homo sapiens}
Length = 298
Score = 377 bits (969), Expect = e-125
Identities = 202/298 (67%), Positives = 246/298 (82%), Gaps = 2/298 (0%)
Query: 477 DFAEEQGLLGRLVHQFKSDVPDQQYLILSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQ 536
DFA+EQ L+GR +H +S+ PDQQYLIL+TARKHF AGG +RI+ TLPPLVF AYQLA +
Sbjct: 1 DFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFR 60
Query: 537 FSALREEDEMWSKKCSKIFRFCHQIILSLIKAELAELPLRLFLQGAMTIGSIDFENHETI 596
+ + D+ W KKC KIF F HQ I +LIKAELAELPLRLFLQGA+ G I FENHET+
Sbjct: 61 YKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETV 120
Query: 597 SYEFISQALSLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFK 656
+YEF+SQA SLYE+EIS+SK QLAAITL++GTFE+M CF EEN EP+RTQ ALAASKL K
Sbjct: 121 AYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLK 180
Query: 657 KPDQCSGVCTCSHLFWSGKNSQ--GEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIE 714
KPDQ V TC+HLFWSG+N+ GEE+ GKRV+ECLKK ++IA+QCMD S+QVQLFIE
Sbjct: 181 KPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIE 240
Query: 715 LLNHYIYYFEKKNEHITVAMLNQLIGKIRDELANLESNEETEQISKHFTNTLFHLRNR 772
+LN YIY++EK+N+ +T+ +LNQLI KIR++L NLES+EETEQI+KHF NTL HLR R
Sbjct: 241 ILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR 298
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 87.2 bits (215), Expect = 1e-17
Identities = 97/676 (14%), Positives = 182/676 (26%), Gaps = 235/676 (34%)
Query: 16 EEASHIVKTQSLQMKRCLDSDKLMDALK-HASTMLSELRTSLLSPKNYYELYMAVTDELR 74
EE HI+ ++ + +L L M+ + +L NY L + E R
Sbjct: 49 EEIDHIIMSKD----AVSGTLRLFWTLLSKQEEMVQKFVEEVLRI-NYKFLMSPIKTEQR 103
Query: 75 Q----LELYLVDEFQRGRKVPDLYELVQYAGNIVPRLYLLITVALVYIKTNSSLKRDLLK 130
Q +Y QR R D +Y V R ++ L++ LL+
Sbjct: 104 QPSMMTRMY---IEQRDRLYNDNQVFAKYN---VSR-----------LQPYLKLRQALLE 146
Query: 131 DLVEMCRGVQ-HPLRG--------LFLRNYLLQCTR-------NVLPDTPEDEGDQAEGT 174
+ V + G +Y +QC N+
Sbjct: 147 LRPA--KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-------------KN 191
Query: 175 VRDSVDFILMNFAEMNKLWVRMQHQGHSRD------KERREREREELRILVGTNLVRLSE 228
+ M + KL ++ SR K R + ELR L
Sbjct: 192 CNSPETVLEM----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL---------- 237
Query: 229 LDSITRDKYKKLVLPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLATLTAFLKSCAEL 288
+ Y+ +L +L V ++A AF SC
Sbjct: 238 ---LKSKPYENCLL--VLLNV---QNA--------------------KAWNAFNLSC--- 266
Query: 289 QAGVNVKNILI-----ALIDRLSLYAQKNKEFNSLFETFSEQ-----VASIVQSRI-DMP 337
IL+ + D LS + + T + + + R D+P
Sbjct: 267 -------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 338 AE--DIVALQVSLINLALKCYPDKVDYIDKILQTTVETFQKLNIERVEYNTPVSRELMRL 395
E ++S+I +++ D + + T + ++ +E R++
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKMFDR 377
Query: 396 LKIFIDQYNNILTVIQLTYFAPLMELFDFYGRKSVSAYLITNALNNDTLVPTSESVDSIL 455
L +F +PT +L
Sbjct: 378 LSVF----------------------------------------PPSAHIPTI-----LL 392
Query: 456 TIVSSLVQDQDDQPAEEEDPEDFAEE---QGLLGRLVHQFKSDVPDQQYLILSTARK--- 509
++ + D + D + L+ + + +P +
Sbjct: 393 SL---IWFD-----VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 510 -HFQAGGKKRIKHTLPPLVFQAYQLATQFSALREEDEMWSKKCSKIFRFCHQIILSLIKA 568
H + + H P F + L + D+ + + H I L
Sbjct: 445 LH-----RSIVDHYNIPKTFDSDDLIPPY-----LDQYF---------YSH-IGHHLKNI 484
Query: 569 ELAELPL---RLFLQGAMTIGSIDFE------NHETISYEFIS------QALSLYEEEIS 613
E E +FL DF H++ ++ Q L Y+ I
Sbjct: 485 EHPERMTLFRMVFL---------DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 614 ESKCQLAAITLLVGTF 629
++ + + + F
Sbjct: 536 DNDPKYERLVNAILDF 551
Score = 81.1 bits (199), Expect = 1e-15
Identities = 93/628 (14%), Positives = 183/628 (29%), Gaps = 202/628 (32%)
Query: 247 EQVVSCRDAIAQEYLMECIIQVFPDEFHLATLTAFLKS--CAELQAGVNVKNILI-ALID 303
E +D I+ VF D AF+ + C ++Q K+IL ID
Sbjct: 13 EHQYQYKD----------ILSVFED--------AFVDNFDCKDVQD--MPKSILSKEEID 52
Query: 304 RLSLYAQKNKEFNS--LFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYP---- 357
+ K+ + LF T + +VQ + E+++ + + +K
Sbjct: 53 HI--IMSKDAVSGTLRLFWTLLSKQEEMVQKFV----EEVLRINYKFLMSPIKTEQRQPS 106
Query: 358 -DKVDYIDKI--LQTTVETFQKLNIERVEYNTPVSRELMRLLKIFIDQYNNILTVIQLTY 414
YI++ L + F K N+ R++ + + L+ L + + +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL------RPAKNVLI----- 155
Query: 415 FAPLMELFDFYGR----KSVSAYLITNALNNDTLVPTSE------------SVDSILTIV 458
G K+ + + + + + S +++L ++
Sbjct: 156 ----------DGVLGSGKTW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 459 SSLVQDQDDQPAEEED-----PEDFAEEQGLLGRLV--HQFKS------DVPDQQYL--- 502
L+ D D Q L RL+ +++ +V + +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 503 -----ILSTARKH-------FQAGGKKRIKHTLPPL-------VFQAYQLATQFSALREE 543
IL T R + H L + Y L + L E
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPRE 321
Query: 544 DEMWSKKCSKIFRFCHQIILSLIKAELAELPLRL--FLQGAMTIGSIDFENHETISYEFI 601
+ + LS+I + + + ++ + TI I
Sbjct: 322 ------VLT-----TNPRRLSIIAESIRDGLATWDNWKH-------VNCDKLTTI----I 359
Query: 602 SQAL-SLYEEEISESKCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFKKPDQ 660
+L L E + F+++S F +A I T L+
Sbjct: 360 ESSLNVLEPAEYRKM-------------FDRLSVF-PPSA-HIPTI-LLS---------- 393
Query: 661 CSGVCTCSHLFWSGKNSQGEEIRDGKRVLECLKKG----------VRIASQCMDMSVQV- 709
L W + ++ V + K + I S +++ V++
Sbjct: 394 ---------LIWF--DVIKSDVMV--VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 710 ---QLFIELLNHYIYYFEKKNEHITVAMLN----QLIGKIRDELANLESNEETEQISKHF 762
L +++HY ++ + L+ IG L N+E E F
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG---HHLKNIEHPERMTLFRMVF 497
Query: 763 TNTLFHLRN--RQEGPPVDGISYEGLTL 788
+ F L R + + TL
Sbjct: 498 LDFRF-LEQKIRHDSTAWNASGSILNTL 524
Score = 36.0 bits (82), Expect = 0.064
Identities = 38/282 (13%), Positives = 86/282 (30%), Gaps = 108/282 (38%)
Query: 6 SPSEEQDR-----LLEEASHIVKTQSLQMKRC-LDSDKLMDALKHASTMLSEL-RTSLL- 57
P+E + + ++HI T L + + +M ++++L + SL+
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHI-PTILLSLIWFDVIKSDVMV-------VVNKLHKYSLVE 418
Query: 58 -SPKNY-YELYMAVTDELRQLELYLVDEFQRGRKVPDLYELV------------------ 97
PK + + +LE +E+ R + D Y +
Sbjct: 419 KQPKESTISIPSIYLELKVKLE----NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 98 QYAG------------NIVPRLYL---LITVALVYIKTNSSLKRDLLKDLVEMCRGVQHP 142
+ G + ++L + + + T + +L L +
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-------- 526
Query: 143 LRGLFLRNYLLQCTRNVLPDTPEDEGDQAEGTVRDSVDFILMNFAEMNKLWVRMQHQGHS 202
L+ Y N P+ E V +DF+ + + +
Sbjct: 527 -----LKFYKPYICDN----DPKY-----ERLVNAILDFL-------------PKIEENL 559
Query: 203 -RDKERREREREELRILVGTNLVRLS---ELDSITRDKYKKL 240
K T+L+R++ E ++I + +K++
Sbjct: 560 ICSKY--------------TDLLRIALMAEDEAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 73.5 bits (180), Expect = 2e-13
Identities = 83/550 (15%), Positives = 150/550 (27%), Gaps = 221/550 (40%)
Query: 214 ELRILVGTNL-VRLSELDSITRDKYKKLVLPGILEQVVSCRDAIAQEYLMECIIQVFPDE 272
E +LV T S+L ++++ K IL + + A + DE
Sbjct: 17 EHVLLVPTASFFIASQL----QEQFNK-----ILPEPT---EGFAAD-----------DE 53
Query: 273 F-HLATLTA-FLKSCAELQAGVNVKNILIALIDRLSLYAQKNKEFNSLFETFSEQVASIV 330
A L FL + L V L L L EF + +
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVL--NLCL-----TEFENCY----------- 95
Query: 331 QSRIDMPAEDIVALQVSLINLALKCYPDKVDYIDKILQTTVETFQKLNIERVEYNTP--- 387
+ DI AL L+ + ++++ + + +
Sbjct: 96 -----LEGNDIHALAAKLLQEN----DTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 388 --VSRELMRLLKIFIDQYNNILTVIQLTYFAPLMELFDFYGRKSVSAYLITNA---LNND 442
V +L+ IF Q N YF L +L+ Y + LI + L+
Sbjct: 147 RAVGEGNAQLVAIFGGQGNT------DDYFEELRDLYQTY--HVLVGDLIKFSAETLSE- 197
Query: 443 TLVPTSESVDSILT----IVSSLVQDQDDQPAEEEDPEDFAEEQGLLGRLVHQFKSDVPD 498
L+ T+ + + T I+ L E+P + PD
Sbjct: 198 -LIRTTLDAEKVFTQGLNILEWL-----------ENPSN------------------TPD 227
Query: 499 QQYLILSTARKHFQAGGKKRIKHTLP---PLVFQAYQLATQFSALREEDEMWSKKCSKIF 555
+ YL+ ++P PL+ QLA +
Sbjct: 228 KDYLL------------------SIPISCPLIG-VIQLA-HYVV---------------- 251
Query: 556 RFCHQIILSLIKAELAELPLRLFLQGAMTIGSIDFENHETISYEFISQALSLYEEEISES 615
L EL L+GA Q L ++
Sbjct: 252 -TAKL--LGFTPGELRSY-----LKGATGHS----------------QGL------VT-- 279
Query: 616 KCQLAAITLLVGTFEKMSCFGEENAEPIRTQSALAASKLFKKPDQCSGVCTCSHLFWSGK 675
A ++E F + + A+ LF+ G
Sbjct: 280 ----AVAIAETDSWES---F-FVSV-----RKAITV------------------LFFIGV 308
Query: 676 NSQ---GEEIRDGKRVLECLKKGVRIASQCMDMSV------QVQLFIELLNHYIYYFEKK 726
+ + L+ + S M +S+ QVQ ++ N ++
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPS-PM-LSISNLTQEQVQDYVNKTNSHL----PA 362
Query: 727 NEHITVAMLN 736
+ + ++++N
Sbjct: 363 GKQVEISLVN 372
Score = 54.3 bits (130), Expect = 2e-07
Identities = 94/590 (15%), Positives = 171/590 (28%), Gaps = 250/590 (42%)
Query: 4 LPSPSEE--QD-----------RLLEEASHIVKTQSL-QMKRCLDSDKLM------DALK 43
LP P+E D + L S +V+ + Q + L L L+
Sbjct: 41 LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL---NLCLTEFENCYLE 97
Query: 44 ----H--ASTMLSELRTSLLSP----KNYYE----------------LYMAVTDELRQLE 77
H A+ +L E T+L+ KNY L+ AV + +
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG--NAQ 155
Query: 78 LYLV-----------DEFQRGRKVPDLYELVQYAGNIVPRLYLLITVALVYIKTNSSLKR 126
L + +E + DLY+ Y + LI + +
Sbjct: 156 LVAIFGGQGNTDDYFEELR------DLYQT--YHVLVGD----LIKFSAETLSELIRTTL 203
Query: 127 DLLK------DLVEMCRG--------------VQHPLRGLF-LRNYLLQCTRNVLPDTPE 165
D K +++E + PL G+ L +Y++ +L TP
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA--KLLGFTPG 261
Query: 166 DEGDQAEGTVRDSVDFILMNFAEMNKLWVRMQHQGHSRDKERREREREELRILVGTNLVR 225
+ +G GHS+ ++ +
Sbjct: 262 ELRSYLKGAT------------------------GHSQG------------LVTAV-AIA 284
Query: 226 LS----ELDSITRDKYKKLVLPGILEQVVSCRDAIAQEYLMECIIQVFPDEFHLATLTAF 281
+ R L G R + +P + + +
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIG-------VR---CY--------EAYP---NTSLPPSI 323
Query: 282 LKSCAELQAGV-----NVKNI----LIALIDRLSLYAQKNKEFNSLFETFSEQVA-SIVQ 331
L+ E GV ++ N+ + +++ N + +QV S+V
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT------NSHLPA-----GKQVEISLVN 372
Query: 332 SRIDM----PAEDIVALQVSLINLALKCYPDKVDYIDKILQTTVETFQKLNIERVEYNTP 387
++ P + + L ++L K P +D Q+ R+ P
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTL--RKAKA-PSGLD------QS-----------RI----P 408
Query: 388 VSRELMRLLKIFIDQYNNILTVIQLTYFAPLMELFDFYGRKSVSAYLI--TNALNNDTLV 445
S R LK F +++ L V +P F+ S L+ ++ +N D LV
Sbjct: 409 FSE---RKLK-FSNRF---LPV-----ASP------FH-----SHLLVPASDLINKD-LV 444
Query: 446 PTSESVDSILTIVSSL---VQDQDDQPAEEEDPEDFAEEQG-LLGRLVHQ 491
+ S ++ + V D D D G + R+V
Sbjct: 445 KNNVSFNA-----KDIQIPVYDT-------FDGSDLRVLSGSISERIVDC 482
Score = 41.2 bits (96), Expect = 0.002
Identities = 45/297 (15%), Positives = 88/297 (29%), Gaps = 90/297 (30%)
Query: 305 LSLYAQKNKEFNSLF--------ETFSEQVASIVQSRIDMPAEDIV--------ALQVSL 348
+ LY + +K ++ +T+ + IV + P + ++ +
Sbjct: 1633 MDLY-KTSKAAQDVWNRADNHFKDTYGFSILDIVI---NNPVNLTIHFGGEKGKRIRENY 1688
Query: 349 INLALKCYPDKVDYIDKILQTTVETFQKLNIERVE------YNT-P----VSRELMRLLK 397
+ + D +KI + E + T P + + LK
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748
Query: 398 -IFIDQYNNILTVIQLTYFA--PLMELFDFYGRKSVSAYL--ITNALN-NDTL------- 444
+ + FA L E Y +A L + + ++ +
Sbjct: 1749 SKGLIPADA--------TFAGHSLGE----Y-----AA-LASLADVMSIESLVEVVFYRG 1790
Query: 445 ------VPTSE---SVDSILTIVSSLVQDQDDQPAEEEDPEDFAEEQGLLGRLVHQFKSD 495
VP E S ++ I V Q A + E + G L +V + +
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV-NY--N 1847
Query: 496 VPDQQYLI------LSTARKHFQAGGKKRIKHTLPPLVFQAYQLATQFSALREEDEM 546
V +QQY+ L T ++I ++ +L S L E +
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKLQKID-----II----ELQKSLS-LEEVEGH 1894
Score = 40.0 bits (93), Expect = 0.003
Identities = 44/260 (16%), Positives = 72/260 (27%), Gaps = 92/260 (35%)
Query: 510 HFQAGGKKRIKHTLPPLVFQAYQLATQFSALREEDEMWSKKCSKIFRFCHQIILSLIKAE 569
HF KRI+ ++F+ D K KIF+ ++ S
Sbjct: 1675 HFGGEKGKRIRENYSAMIFETI-----------VDG--KLKTEKIFKEINEHSTSYTFRS 1721
Query: 570 LAELPLRL--FLQGAMTIGSIDFENHETISYEFISQALSLYEEEISESKCQLAAITLLVG 627
L L F Q A+T + + +E+ S+ G
Sbjct: 1722 EKGL-LSATQFTQPALT----------LMEK-------AAFEDLKSK------------G 1751
Query: 628 TFEKMSCF-----GEENAEPIRTQSALAASKLFKKPDQCSGVC----TCSHLFWSGKNSQ 678
+ F GE +ALA+ + V +F+ G Q
Sbjct: 1752 LIPADATFAGHSLGE--------YAALAS---------LADVMSIESLVEVVFYRGMTMQ 1794
Query: 679 GEEIRDGKRVLECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNEHITVAMLNQL 738
RD E + + + V E L + + K+ L
Sbjct: 1795 VAVPRD-----ELGRSNYGMIA-INPGRVAASFSQEALQYVVERVGKRT--------GWL 1840
Query: 739 IGKIRDELANLESNEETEQI 758
+ E+ N N E +Q
Sbjct: 1841 V-----EIVNY--NVENQQY 1853
Score = 40.0 bits (93), Expect = 0.004
Identities = 47/337 (13%), Positives = 99/337 (29%), Gaps = 134/337 (39%)
Query: 48 MLSELRTSLLSP----------KNYYELY-MAVTDELRQ--LELYLVDEFQRGRKVPDLY 94
M +L + S ++ + Y ++ D + + L + ++G+++ + Y
Sbjct: 1631 MGMDLYKT--SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688
Query: 95 ELVQYAGNIVPRLYLLITVALVYIKTNSSLKRDLLKDLVEMCRGV--QHPLRGLFLRNYL 152
+ + + K++ E + +G L
Sbjct: 1689 SAMIFETI----------------VDGKLKTEKIFKEINEHSTSYTFRSE-KG------L 1725
Query: 153 LQCTRNVLPDT-P-------------EDEGDQAEGTVRDSVDFILMNFAEMNKLWVRMQH 198
L T+ T P + +G D+ FA
Sbjct: 1726 LSATQF----TQPALTLMEKAAFEDLKSKG----LIPADAT------FA----------- 1760
Query: 199 QGHSRDKERREREREELRILVG--TNLVRLSEL----DSITRDKYKKLV-LPGILEQVVS 251
GHS +G L L+++ + ++V G+ QV
Sbjct: 1761 -GHS----------------LGEYAALASLADVMSIESLV------EVVFYRGMTMQVAV 1797
Query: 252 CRDAIAQE-YLMECIIQVFPDE----FHLATLTAFLKSCAELQAGV------NVKN--IL 298
RD + + Y M I + P F L ++ + + NV+N +
Sbjct: 1798 PRDELGRSNYGM---IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
Query: 299 IA--------LIDRLSLYAQKNKEFNSLFETFS-EQV 326
A + + L+ + + L ++ S E+V
Sbjct: 1855 AAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 31.9 bits (72), Expect = 0.94
Identities = 38/217 (17%), Positives = 69/217 (31%), Gaps = 65/217 (29%)
Query: 5 PSP-------SEEQ-----DRL---LEEASHI-----------VKT---QSLQ-MKRCLD 34
PSP ++EQ ++ L + V + QSL + L
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 35 SDKLMDALKHASTMLSE---------LRTSLLSPKNYYELYMAVTDELRQLELYLVD-EF 84
K L + SE L + SP ++ + +L +L + F
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVA--SP--FHSHLLVPASDLINKDLVKNNVSF 450
Query: 85 QRGR-KVP-----DLYELVQYAGNIVPRLYLLITVALVY----IKTNSSLKRDLLKDLVE 134
++P D +L +G+I R+ I V + ++ +++
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH-------ILD 503
Query: 135 MCRGVQHPLRGLFLRNYLLQCTRNVLPDT----PEDE 167
G L L RN R ++ T P+D+
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDD 540
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial
fission, GT stalk, PH, BSE, membrane fission; HET: 1PE;
3.10A {Rattus norvegicus} PDB: 3snh_A
Length = 772
Score = 29.8 bits (66), Expect = 4.2
Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 8 SEEQDRLLEEASHIVKTQSLQMKRCLDSDKLMDALKHASTMLSELRTSLLS 58
+Q+ L+EE++ + + L ++ ALK A +++ ++ T+ +S
Sbjct: 728 CGDQNTLMEESAEQAQRR----DEML---RMYHALKEALSIIGDINTTTVS 771
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron
sulphur flavoprotein; HET: OMT FMN AKG; 3.0A
{Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1
d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 29.0 bits (66), Expect = 7.6
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 578 FLQGAMTIGSIDFENHETI 596
F+ M++G++ E H T+
Sbjct: 853 FITPGMSMGALSPEAHGTL 871
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 29.1 bits (66), Expect = 8.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 578 FLQGAMTIGSIDFENHETI 596
F G M++G++ E HET+
Sbjct: 870 FCTGGMSLGALSREAHETL 888
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.383
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,727,922
Number of extensions: 714105
Number of successful extensions: 1470
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1431
Number of HSP's successfully gapped: 29
Length of query: 788
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 687
Effective length of database: 3,881,772
Effective search space: 2666777364
Effective search space used: 2666777364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.0 bits)