RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12283
         (788 letters)



>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 307

 Score = 29.6 bits (66), Expect = 1.5
 Identities = 28/216 (12%), Positives = 65/216 (30%), Gaps = 23/216 (10%)

Query: 195 RMQHQGHSRDKERREREREELRILVGTNLVRLSELDSITRDKYKKLVLP----GILEQVV 250
            +  +     +   E E   L  +   N+V L   D      +  L++     G L   +
Sbjct: 41  CIAKKALEGKEGSMENEIAVLHKIKHPNIVAL--DDIYESGGHLYLIMQLVSGGELFDRI 98

Query: 251 SCRDAIAQEYLMECIIQVFPDEFHLATLTAFLKSCAELQAGVNVKNILIALIDR------ 304
             +    +      I QV            +L     +   +  +N+L   +D       
Sbjct: 99  VEKGFYTERDASRLIFQV-------LDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMI 151

Query: 305 ----LSLYAQKNKEFNSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYPDKV 360
               LS         ++   T       ++  +    A D  ++ V    L     P   
Sbjct: 152 SDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYD 211

Query: 361 DYIDKILQTTVETFQKLNIERVEYNTPVSRELMRLL 396
           +   K+ +  ++   + +    +  +  +++ +R L
Sbjct: 212 ENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHL 247


>d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen
           (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 122

 Score = 27.8 bits (62), Expect = 2.4
 Identities = 10/86 (11%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 689 LECLKKGVRIASQCMDMSVQVQLFIELLNHYIYYFEKKNEH---ITVAMLNQLIGKI-RD 744
           +  L+KG+    + +D +    + +++       +    E    + +  +  +   I   
Sbjct: 27  IHFLEKGLHS--RAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDRIFDISKSISTK 84

Query: 745 ELANLESNEETEQISKHFTNTLFHLR 770
           +L  L   +E   +   F +  + + 
Sbjct: 85  DLVELIVEDE-STLKVKFGSVEYKVA 109


>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 293

 Score = 28.6 bits (63), Expect = 3.2
 Identities = 38/210 (18%), Positives = 72/210 (34%), Gaps = 10/210 (4%)

Query: 195 RMQHQGHSRDKERREREREELRILVGTNLVRLSELDSITRDKYKKLVLP----GILEQVV 250
           R +       +E  ERE   L+ +   N++ L   +         L+L     G L   +
Sbjct: 47  RTKSSRRGVSREDIEREVSILKEIQHPNVITL--HEVYENKTDVILILELVAGGELFDFL 104

Query: 251 SCRDAIAQE---YLMECIIQVFPDEFHLATLTAFLKSCAELQAGVNVKNILIALIDR-LS 306
           + ++++ +E     ++ I+        L      LK    +    NV    I +ID  L+
Sbjct: 105 AEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLA 164

Query: 307 LYAQKNKEFNSLFETFSEQVASIVQSRIDMPAEDIVALQVSLINLALKCYPDKVDYIDKI 366
                  EF ++F T       IV         D+ ++ V    L     P   D   + 
Sbjct: 165 HKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQET 224

Query: 367 LQTTVETFQKLNIERVEYNTPVSRELMRLL 396
           L        +   E     + ++++ +R L
Sbjct: 225 LANVSAVNYEFEDEYFSNTSALAKDFIRRL 254


>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 27.8 bits (61), Expect = 6.2
 Identities = 52/314 (16%), Positives = 104/314 (33%), Gaps = 33/314 (10%)

Query: 226 LSELDSITRDKYKKLVLPGILEQVVSCR---DAIAQEYLMECIIQVFPDEFHLAT----- 277
           LSE+     +     + P  + ++++         Q ++++C+    P +   A      
Sbjct: 181 LSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICER 240

Query: 278 LTAFLKS--CAELQAGVNVKNILIALIDRLSLYAQ----KNKEFNSLFETFSEQVASIVQ 331
           +T  L     A + + V V    + L+ + S Y      K         +   +V  +  
Sbjct: 241 VTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVAL 300

Query: 332 SRIDMPAEDIVALQVSLINLALKCYPDKVDYIDKILQTTVETFQKLNIERV-----EYNT 386
             I++  +    +    I +    Y D +    + L   +    + NI +V     EY T
Sbjct: 301 RNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYAT 360

Query: 387 PVSRELMRLLKIFIDQYNNILTVIQLTYFAPLMELFDFYGRKSVSAYLITNALNNDTLVP 446
            V  + +R     I +    +        + L++L        V    I    +     P
Sbjct: 361 EVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQT-KVNYVVQEAIVVIRDIFRKYP 419

Query: 447 TSESVDSILTIVSSLVQDQDDQPA---------EEEDPEDFAEEQGLLGRLVHQFKSDVP 497
                +SI+  +   +   D+  A         E  +  D A+E  LL   +  F  +  
Sbjct: 420 --NKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADE--LLESFLEGFHDEST 475

Query: 498 DQQYLILSTARKHF 511
             Q  +L+   K F
Sbjct: 476 QVQLTLLTAIVKLF 489


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.383 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,824,999
Number of extensions: 134877
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 15
Length of query: 788
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 695
Effective length of database: 1,130,706
Effective search space: 785840670
Effective search space used: 785840670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)