BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12284
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 96 ERIRRVIGVAPCIPIGRGFFQYSFG----LIPRRHVLTTVVGAPIEVPKVEQPSNDLIAE 151
E+I V G C I + Y G L P V +P++ PK + + L E
Sbjct: 187 EQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPE 246
Query: 152 YHKKYVDSLTQLFEDHKEKY 171
+++KY D + D E Y
Sbjct: 247 HYRKYSDYIKGSNLDAPEPY 266
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 96 ERIRRVIGVAPCIPIGRGFFQYSFG----LIPRRHVLTTVVGAPIEVPKVEQPSNDLIAE 151
E+I V G C I + Y G L P V +P++ PK + + L E
Sbjct: 268 EQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPE 327
Query: 152 YHKKYVDSLTQLFEDHKEKY 171
+++KY D + D E Y
Sbjct: 328 HYRKYSDYIKGSNLDAPEPY 347
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 96 ERIRRVIGVAPCIPIGRGFFQYSFG----LIPRRHVLTTVVGAPIEVPKVEQPSNDLIAE 151
E+I V G C I + Y G L P V +P++ PK + + L E
Sbjct: 626 EQIEEVDGRVYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPE 685
Query: 152 YHKKYVDSLTQLFEDHKEKY 171
+++KY D + D E Y
Sbjct: 686 HYRKYSDYIKGSNLDAPEPY 705
>pdb|2ZB9|A Chain A, Crystal Structure Of Tetr Family Transcription Regulator
Sco0332
pdb|2ZB9|B Chain B, Crystal Structure Of Tetr Family Transcription Regulator
Sco0332
Length = 214
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 9 LSASEQSITHVLTHSKGGRVLCLMVGGARESFKCKPGIYEIILKSRKGFV 58
L A ++ THV+T + GGR+L ++G A+ ++ R+
Sbjct: 95 LLAQLRAFTHVMTRTPGGRILTELIGAAQTDADLATAYRQLYSAQRRALA 144
>pdb|2PY7|X Chain X, Crystal Structure Of E. Coli Phosphoenolpyruvate
Carboxykinase Mutant Lys213ser Complexed With
Atp-mg2+-mn2+
Length = 540
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 135 PIEVPKVE----QPSNDLIA-EYHKKYVDSLTQLFEDHKEKYVDDPKTAKLV 181
P E+P V+ P N + E ++ ++L +LF D+ +KY D P A LV
Sbjct: 483 PTELPGVDTKILDPRNTYASPEQWQEKAETLAKLFIDNFDKYTDTPAGAALV 534
>pdb|1K3C|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp,
Alf3 And Pyruvate
pdb|1K3D|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp And
Alf3
pdb|1OS1|A Chain A, Structure Of Phosphoenolpyruvate Carboxykinase Complexed
With Atp,Mg, Ca And Pyruvate.
pdb|2OLQ|A Chain A, How Does An Enzyme Recognize Co2?
pdb|2OLR|A Chain A, Crystal Structure Of Escherichia Coli Phosphoenolpyruvate
Carboxykinase Complexed With Carbon Dioxide, Mg2+, Atp
pdb|1AQ2|A Chain A, Phosphoenolpyruvate Carboxykinase
pdb|2PXZ|X Chain X, E. Coli Phosphoenolpyruvate Carboxykinase (Pepck)
Complexed With Atp, Mg2+, Mn2+, Carbon Dioxide And
Oxaloacetate
Length = 540
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 135 PIEVPKVE----QPSNDLIA-EYHKKYVDSLTQLFEDHKEKYVDDPKTAKLV 181
P E+P V+ P N + E ++ ++L +LF D+ +KY D P A LV
Sbjct: 483 PTELPGVDTKILDPRNTYASPEQWQEKAETLAKLFIDNFDKYTDTPAGAALV 534
>pdb|1AYL|A Chain A, Phosphoenolpyruvate Carboxykinase
Length = 541
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 135 PIEVPKVE----QPSNDLIA-EYHKKYVDSLTQLFEDHKEKYVDDPKTAKLV 181
P E+P V+ P N + E ++ ++L +LF D+ +KY D P A LV
Sbjct: 483 PTELPGVDTKILDPRNTYASPEQWQEKAETLAKLFIDNFDKYTDTPAGAALV 534
>pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With
Dna
Length = 956
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 121 LIPRRHVLTTVVGAPIEVPKVEQPSNDLIAEYHKKYVDSLTQLFEDHKEKY 171
L P + +P++ P+ E DL E+++KY D + D E Y
Sbjct: 297 LPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPY 347
>pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With
Sinefungin
Length = 1002
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 121 LIPRRHVLTTVVGAPIEVPKVEQPSNDLIAEYHKKYVDSLTQLFEDHKEKY 171
L P + +P++ P+ E DL E+++KY D + D E Y
Sbjct: 343 LPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPY 393
>pdb|1B48|A Chain A, Crystal Structure Of Mgsta4-4 In Complex With Gsh
Conjugate Of 4-Hydroxynonenal In One Subunit And Gsh In
The Other: Evidence Of Signaling Across Dimer Interface
In Mgsta4-4
pdb|1B48|B Chain B, Crystal Structure Of Mgsta4-4 In Complex With Gsh
Conjugate Of 4-Hydroxynonenal In One Subunit And Gsh In
The Other: Evidence Of Signaling Across Dimer Interface
In Mgsta4-4
Length = 221
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 125 RHVLTTVVGAPIEVPKVEQPSNDLIAEYHK-KYVDSLTQLFEDHKEKYV 172
+ ++ + AP + PK ++ S DLI K +Y ++ +DH E ++
Sbjct: 99 QDLMMMIAVAPFKTPKEKEESYDLILSRAKTRYFPVFEKILKDHGEAFL 147
>pdb|1GUK|A Chain A, Crystal Structure Of Murine Alpha-Class Gsta4-4
pdb|1GUK|B Chain B, Crystal Structure Of Murine Alpha-Class Gsta4-4
Length = 222
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 125 RHVLTTVVGAPIEVPKVEQPSNDLIAEYHK-KYVDSLTQLFEDHKEKYV 172
+ ++ + AP + PK ++ S DLI K +Y ++ +DH E ++
Sbjct: 100 QDLMMMIAVAPFKTPKEKEESYDLILSRAKTRYFPVFEKILKDHGEAFL 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,847,641
Number of Sequences: 62578
Number of extensions: 258909
Number of successful extensions: 573
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 11
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)