RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12284
(183 letters)
>gnl|CDD|112781 pfam03982, DAGAT, Diacylglycerol acyltransferase. The terminal
step of triacylglycerol (TAG) formation is catalyzed by
the enzyme diacylglycerol acyltransferase (DAGAT).
Length = 297
Score = 204 bits (520), Expect = 3e-66
Identities = 87/173 (50%), Positives = 118/173 (68%), Gaps = 2/173 (1%)
Query: 11 ASEQSITHVLTHSKGGRVLCLMVGGARESFKCKPGIYEIILKSRKGFVRIALKTGTPIVP 70
S +SI +VL GR + L+VGGA E+ + PG + + LK+RKGFVRIALKTG +VP
Sbjct: 125 VSRESIEYVLDKCGKGRAVVLVVGGAAEALEAHPGKHTLTLKNRKGFVRIALKTGADLVP 184
Query: 71 VFTFGETDLYDQVPNPPGSWLLWLQERIRRVIGVAPCIPIGRGFFQ-YSFGLIPRRHVLT 129
V++FGE D+Y Q NP GS L W+QE+++R IG +P I GRG F Y+FGL+P R +T
Sbjct: 185 VYSFGENDVYKQWENPEGSRLRWVQEKLKRAIGFSPPIFHGRGVFNSYTFGLLPFRKPIT 244
Query: 130 TVVGAPIEVPKVEQPSNDLIAEYHKKYVDSLTQLFEDHKEKYVDDPKTAKLVI 182
TVVGAPIEV K P+ + I E H +Y+++L +LFE+HK K+ P LV+
Sbjct: 245 TVVGAPIEVTKTLNPTQEQIDELHGQYMEALRELFEEHKTKF-GVPPDTDLVL 296
>gnl|CDD|153249 cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
suubgroup are such LPLATs as 2-acylglycerol
O-acyltransferase (MGAT), and similar proteins.
Length = 212
Score = 124 bits (313), Expect = 5e-36
Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 27/169 (15%)
Query: 3 LAFFSALSASEQSITHVLTHSKGGRVLCLMVGGARESFKCKPGIYEIILKSRKGFVRIAL 62
L A+ S ++ +L G ++ + GGARE+ K K Y ++ K RKGF R+AL
Sbjct: 69 LRRLGAVPGSRENCVRLLRE---GELVLIFPGGAREALKSKREEYYLLWKKRKGFARLAL 125
Query: 63 KTGTPIVPVFTFGETDLYDQVPNPPGSWLLWLQERIRRVIGVAPCIPIGRGFFQYSFGLI 122
+ G PIVPVFTFGE +L+ + +P G L R++ +
Sbjct: 126 RAGAPIVPVFTFGEEELFRVLGDPDGPVGKRL----FRLLP------------------L 163
Query: 123 PRRHVLTTVVGAPIEVPKVE--QPSNDLIAEYHKKYVDSLTQLFEDHKE 169
PRR L V G PI VP+ P ++ + E H+KY+ +L +L E HK+
Sbjct: 164 PRRLPLYPVFGEPIVVPRPPIPDPPDEDVEELHQKYIAALRELIEKHKK 212
>gnl|CDD|178380 PLN02783, PLN02783, diacylglycerol O-acyltransferase.
Length = 315
Score = 123 bits (312), Expect = 7e-35
Identities = 66/166 (39%), Positives = 91/166 (54%), Gaps = 19/166 (11%)
Query: 9 LSASEQSITHVLTHSKGGRVLCLMV-GGARESFKCKPGIYEIILKSRKGFVRIALKTGTP 67
AS ++ T +L K G C++V GG +E + G LKSRKGFV+IA++TG P
Sbjct: 156 DPASRKNFTSLL---KAGYS-CIIVPGGVQECLYMEHGSEVAYLKSRKGFVKIAMETGAP 211
Query: 68 IVPVFTFGETDLYDQV-PNPPGSWLLWLQERIRRVIGVAPCIPIGRGFFQYSFGL-IPRR 125
+VPVF FG+T Y P P L ++ R IG P + GR +G IP R
Sbjct: 212 LVPVFCFGQTRAYKWWKPGGP------LVPKLSRAIGFTPIVFWGR------YGSPIPHR 259
Query: 126 HVLTTVVGAPIEVPKVEQPSNDLIAEYHKKYVDSLTQLFEDHKEKY 171
+ VVG PIEV K QPS + +AE +++V++L LFE HK +
Sbjct: 260 TPMHVVVGKPIEVKKNPQPSQEEVAEVLEQFVEALQDLFEKHKARA 305
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 33.9 bits (78), Expect = 0.011
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 14 QSITHVLTHSKGGRVLCLMVGGARESFKCKPGIYEIILKSRKGFVRIALKTGTPIVPV 71
++ + K G L + G R +PG +L +KG R+AL+ G PIVPV
Sbjct: 63 AALREAVELLKEGEWLLIFPEGTR----SRPGK---LLPFKKGAARLALEAGVPIVPV 113
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 33.0 bits (76), Expect = 0.049
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 54 RKGFVRIALKTGTPIVPVFTFG 75
+ G R+A + G PIVPV G
Sbjct: 118 KSGAFRLAKEAGVPIVPVAISG 139
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 32.0 bits (73), Expect = 0.100
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 23 SKGGRVLCLMVGGARESFKCKPGIYEIILKSRKGFVRIALKTGTPIVPVFTFGETDLYDQ 82
SK G V+ + G R +P L+ + G +A K G PIVPV +L++Q
Sbjct: 98 SKPGSVVWIFPEGTRTRRDKRP------LQFKPGVAHLAEKAGVPIVPVALRYTFELFEQ 151
Query: 83 VPN 85
P
Sbjct: 152 FPE 154
Score = 28.9 bits (65), Expect = 1.1
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 105 APCIPIGRGFFQYSFGLIPRRHVLTTVVGAPIEVPKVEQPSNDLIAEYHKKYVDSLTQLF 164
P +P+ +Y+F L + + +G PI L E + + LT+L
Sbjct: 135 VPIVPV---ALRYTFELFEQFPEIFVRIGPPIPY-----AETALGEELAAELANRLTRLL 186
Query: 165 E 165
+
Sbjct: 187 D 187
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 32.2 bits (73), Expect = 0.10
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 47 YEIILKSRKGFVRIALKTGTPIVPVFTFGETDLYDQVPNPPGSWLLWLQERIRRVIGVAP 106
E +L ++G R+AL+ G PIVPV G +L+ G + + I P
Sbjct: 153 GEELLPFKRGAARLALEAGVPIVPVAIVGAEELFPS--LKKGKVKVRIGPPIDISALPEP 210
Query: 107 CIP 109
+P
Sbjct: 211 LLP 213
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 30.7 bits (70), Expect = 0.16
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 15 SITHVLTHSKGGRVLCLMVGGAR-ESFKCKPGIYEIILKSRKGFVRIALKTGTPIVPV 71
++ +++ + G ++ + G R + P +KG R+A + G PIVPV
Sbjct: 79 TLEYLVELLREGELVLIFPEGTRSRGGELLPF--------KKGAFRLAREAGVPIVPV 128
>gnl|CDD|153248 cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ACT14924. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Pectobacterium carotovorum subsp. carotovorum PC1 locus
ACT14924 putative acyltransferase, and similar proteins.
Length = 210
Score = 30.7 bits (70), Expect = 0.32
Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 32/100 (32%)
Query: 54 RKGFVRIALKTGTPIVPVFTFGETDLYDQVPNPPGSWLLWLQERIRRVIGVAPCIPIGRG 113
R+A K P+VPV+ G S L +L I +
Sbjct: 125 NPFVARLARKAKAPVVPVYFSGRN-----------SRLFYLAGLIHPTLRTL-------- 165
Query: 114 FFQYSFGLIPR------RHVLTTVVGAPIEVPKVEQPSND 147
L+PR + VG PI ++ + +
Sbjct: 166 -------LLPRELLNKRGKTIRIRVGRPIPPEELARFEDA 198
>gnl|CDD|223510 COG0433, COG0433, HerA helicase [Replication, recombination, and
repair].
Length = 520
Score = 30.7 bits (69), Expect = 0.47
Identities = 10/66 (15%), Positives = 21/66 (31%)
Query: 108 IPIGRGFFQYSFGLIPRRHVLTTVVGAPIEVPKVEQPSNDLIAEYHKKYVDSLTQLFEDH 167
I + + R L V+ IE + D+ + + ++ L E
Sbjct: 286 ILLLDKLEELVLEDEIRLKSLKGVIFVSIEDLERPLERLDVSLQLGSRVSPAIRALTEPG 345
Query: 168 KEKYVD 173
+ +D
Sbjct: 346 RLAVID 351
>gnl|CDD|183229 PRK11611, PRK11611, enhanced serine sensitivity protein SseB;
Provisional.
Length = 246
Score = 28.9 bits (65), Expect = 1.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 149 IAEYHKKYVDSLTQLFEDHK 168
+AE + +DSLT LF+ K
Sbjct: 137 VAEPPAQMIDSLTTLFKTIK 156
>gnl|CDD|153246 cd07984, LPLAT_LABLAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LABLAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as lipid A
biosynthesis lauroyl/myristoyl (LABLAT, HtrB)
acyltransferases and similar proteins.
Length = 192
Score = 28.3 bits (64), Expect = 1.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 55 KGFVRIALKTGTPIVPVFT 73
G R+ALKTG P+VP F
Sbjct: 120 TGPARLALKTGAPVVPAFA 138
>gnl|CDD|153245 cd07983, LPLAT_DUF374-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: DUF374.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
subgroup are the uncharacterized DUF374
phospholipid/glycerol acyltransferases and similar
proteins.
Length = 189
Score = 28.3 bits (64), Expect = 1.6
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 12/55 (21%)
Query: 18 HVLTHSKGGRVLCLMVGGARES-FKCKPGIYEIILKSRKGFVRIALKTGTPIVPV 71
+L K G + + G R +K KPG+ + +A K+G PIVPV
Sbjct: 89 EMLRALKDGYNIAITPDGPRGPRYKVKPGV-----------ILLARKSGAPIVPV 132
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 27.3 bits (61), Expect = 2.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 50 ILKSRKGFVRIALKTGTPIVPV 71
IL +KG IA+K G PI+PV
Sbjct: 106 ILPFKKGAFHIAIKAGVPILPV 127
>gnl|CDD|153250 cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ABO13168. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Acinetobacter baumannii ATCC 17978 locus ABO13168
putative acyltransferase, and similar proteins.
Length = 163
Score = 27.2 bits (61), Expect = 3.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 54 RKGFVRIALKTGTPIVPVF 72
+ GF IA G PI+ V+
Sbjct: 113 KTGFYHIARGAGVPILLVY 131
>gnl|CDD|225345 COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate
transport and metabolism].
Length = 154
Score = 26.8 bits (60), Expect = 5.3
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 143 QPSNDLIAEYHKKYVD 158
Q + + E H+KY+D
Sbjct: 56 QEAEEKKFELHRKYID 71
>gnl|CDD|184996 PRK15036, PRK15036, hydroxyisourate hydrolase; Provisional.
Length = 137
Score = 26.5 bits (58), Expect = 5.7
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 43 KPGIYEIILKSRKGFVRIALKTGTPIVPV-FTFGETDLYDQVP 84
G Y ++ K+ F + L++ P +PV F + + + VP
Sbjct: 81 TTGDYRVVFKTGDYFKKQNLESFFPEIPVEFHINKVNEHYHVP 123
>gnl|CDD|236469 PRK09331, PRK09331, Sep-tRNA:Cys-tRNA synthetase; Provisional.
Length = 387
Score = 26.8 bits (60), Expect = 8.4
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 10/33 (30%)
Query: 123 PRRHVLTTVVGAPIEVPKVEQPSNDLIAEYHKK 155
PR H L K E PS D IA+ HK+
Sbjct: 309 PRNHDLM----------KFETPSFDEIAKKHKR 331
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.429
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,645,379
Number of extensions: 918451
Number of successful extensions: 869
Number of sequences better than 10.0: 1
Number of HSP's gapped: 864
Number of HSP's successfully gapped: 26
Length of query: 183
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 92
Effective length of database: 6,901,388
Effective search space: 634927696
Effective search space used: 634927696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)