RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12284
(183 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.031
Identities = 32/199 (16%), Positives = 61/199 (30%), Gaps = 66/199 (33%)
Query: 40 FKCKPGIYEIILKSRKGFVRIALKTGTPIVPV-------FTFGET-------------DL 79
CK I+L +R V L T T E DL
Sbjct: 264 LSCK-----ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 80 YDQVP--NP-------------PGSWLLWLQ---ERIRRVIGVAPCI-----PIGRGFFQ 116
+V NP +W W +++ +I + R F
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVLEPAEYRKMFD 376
Query: 117 YSFGL------IPRRHVLTTVVGAPIE------VPKVEQPSNDLIAEYHKKYVDSLTQLF 164
+ IP +L+ + I+ V K+ + S L+ + K+ S+ ++
Sbjct: 377 -RLSVFPPSAHIPT-ILLSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKESTISIPSIY 432
Query: 165 EDHKEKYVDDPKTAKLVIE 183
+ K K ++ + +++
Sbjct: 433 LELKVKLENEYALHRSIVD 451
Score = 26.7 bits (58), Expect = 6.3
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 23/90 (25%)
Query: 93 WLQERIRRVIGVAPCIPIG--------RGFFQYSFGLIPRRHVLTTVVGAPIE-VPKVEQ 143
+L+++IR A + + Y P+ L V A ++ +PK+E+
Sbjct: 502 FLEQKIRHD-STAWNASGSILNTLQQLKFYKPYICDNDPKYERL---VNAILDFLPKIEE 557
Query: 144 -----PSNDLI-----AEYHKKYVDSLTQL 163
DL+ AE + ++ Q+
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>2l5q_A Uncharacterized protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Bacteroides vulgatus}
Length = 142
Score = 27.2 bits (60), Expect = 2.1
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 43 KPGIYEIILKSRKGFVRIALKTGTPIVPVFT 73
KPG+Y++I + + + + VP +
Sbjct: 11 KPGLYKLISQGKNMLIVETVDAAKKRVPAYA 41
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 27.5 bits (62), Expect = 2.3
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 87 PGSWLLWLQERIRRVIGV--APCIPI 110
PG W L R++I + I
Sbjct: 36 PGGWTQVLNSLARKIISIDLQEMEEI 61
>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine
O-acetyltransferase...; ssgcid, structural genomics;
1.95A {Brucella melitensis biovar abortus}
Length = 287
Score = 26.5 bits (59), Expect = 5.0
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 92 LWLQERIRRVIGVA--PCIPIGRGFF 115
+LQ R + P +G G F
Sbjct: 153 YYLQSRSSSIFQTDIHPAARLGSGLF 178
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.30A {Geobacter metallireducens}
Length = 358
Score = 26.1 bits (58), Expect = 6.9
Identities = 6/22 (27%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 30 CLMVGGARESFK-CKPGIYEII 50
CLM+GG +++ + P ++ +
Sbjct: 153 CLMIGGEKQAVERLDP-VFRTL 173
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin
enzyme, photoreactivating enzyme; HET: FAD; 1.80A
{Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB:
1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Length = 484
Score = 26.4 bits (59), Expect = 7.1
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 61 ALKTGTPIVPVFTFGETDLYDQVPNPPGSWLLW-----LQERIRR 100
A ++ +F L P L LQ+R ++
Sbjct: 24 ARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQ 68
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP;
1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1
PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X*
1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Length = 540
Score = 25.8 bits (57), Expect = 8.8
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 11/55 (20%)
Query: 135 PIEVPKVEQPSNDLI--------AEYHKKYVDSLTQLFEDHKEKYVDDPKTAKLV 181
P E+P V + L ++ +K ++L +LF D+ +KY D P A LV
Sbjct: 483 PTELPGV--DTKILDPRNTYASPEQWQEK-AETLAKLFIDNFDKYTDTPAGAALV 534
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 26.0 bits (58), Expect = 9.7
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 21/61 (34%)
Query: 51 LKSRKGFVRIALKTGTPIVPVFTFGETDLYDQVPNPPGSWLLWLQE-------RIRRVIG 103
K+R +I KTG P+ P+ LLWL+ + ++ IG
Sbjct: 111 AKNRGFAQQIYRKTGMPMHPMAP--------------IYKLLWLKNKKTEVFSQAQKWIG 156
Query: 104 V 104
+
Sbjct: 157 I 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.141 0.429
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,876,544
Number of extensions: 174911
Number of successful extensions: 356
Number of sequences better than 10.0: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 11
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)