RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12284
         (183 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 28.8 bits (64), Expect = 0.33
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 9/90 (10%)

Query: 24  KGGRVLCLMVGGARESFKCKPG---IYEIILKSRKGFVRIALKTGTP--IVPVFTFGETD 78
            G +++ +   G R+      G          S     R+   +  P  + P+       
Sbjct: 221 GGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLC--- 277

Query: 79  LYDQVPNPPGSWLLWLQERIRRVIGVAPCI 108
            +D +P P    +   ++R+    G    +
Sbjct: 278 -HDIMPPPSQVEIEIGEKRVIAFNGAGLSV 306


>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP)
           carboxykinase (ATP-oxaloacetate carboxy-lyase)
           {Escherichia coli [TaxId: 562]}
          Length = 313

 Score = 27.7 bits (61), Expect = 0.83
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 135 PIEVPKVE----QPSN--DLIAEYHKKYVDSLTQLFEDHKEKYVDDPKTAKLV 181
           P E+P V+     P N      ++ +K  ++L +LF D+ +KY D P  A LV
Sbjct: 256 PTELPGVDTKILDPRNTYASPEQWQEK-AETLAKLFIDNFDKYTDTPAGAALV 307


>d1up9a_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio desulfuricans,
           different strains [TaxId: 876]}
          Length = 107

 Score = 25.5 bits (55), Expect = 2.5
 Identities = 6/34 (17%), Positives = 10/34 (29%)

Query: 146 NDLIAEYHKKYVDSLTQLFEDHKEKYVDDPKTAK 179
             L    H +     T     H +   + P+  K
Sbjct: 62  KSLYYVVHARGELKHTSCLACHSKVVAEKPELKK 95


>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus
           thermophilus [TaxId: 274]}
          Length = 156

 Score = 24.9 bits (53), Expect = 5.4
 Identities = 6/17 (35%), Positives = 11/17 (64%), Gaps = 1/17 (5%)

Query: 29  LCLMVGGARESF-KCKP 44
           L +M+GG  E+  + +P
Sbjct: 127 LTVMLGGPEEAVERVRP 143


>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 161

 Score = 24.4 bits (52), Expect = 7.9
 Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 1/17 (5%)

Query: 29  LCLMVGGARESF-KCKP 44
           L +MVGG +  F K   
Sbjct: 132 LSVMVGGDKAIFDKYYD 148


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.141    0.429 

Gapped
Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 700,634
Number of extensions: 33703
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 5
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)