BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12287
(76 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14686|NCOA6_HUMAN Nuclear receptor coactivator 6 OS=Homo sapiens GN=NCOA6 PE=1 SV=3
Length = 2063
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/59 (64%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 17 INLRKVEPWNSVRVTFTIPKEAAVRLRQLAQQGNATLLQLGILSVQVEGDELI-LTLHQ 74
+ ++KVEPWNSVRVTF IP+EAA RLR LAQ N L LGILSVQ+EG+ I L L Q
Sbjct: 83 LKVQKVEPWNSVRVTFNIPREAAERLRILAQSNNQQLRDLGILSVQIEGEGAINLALAQ 141
>sp|Q9JL19|NCOA6_MOUSE Nuclear receptor coactivator 6 OS=Mus musculus GN=Ncoa6 PE=1 SV=1
Length = 2067
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/53 (64%), Positives = 40/53 (75%)
Query: 17 INLRKVEPWNSVRVTFTIPKEAAVRLRQLAQQGNATLLQLGILSVQVEGDELI 69
+ ++KVEPWNSVRVTF IP+EAA RL LAQ N L LGILSVQ+EG+ I
Sbjct: 83 LKVQKVEPWNSVRVTFNIPREAAERLWILAQSNNQQLRDLGILSVQIEGEGAI 135
>sp|B4UIX7|PURL_ANASK Phosphoribosylformylglycinamidine synthase 2 OS=Anaeromyxobacter
sp. (strain K) GN=purL PE=3 SV=1
Length = 759
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 26 NSVRVTFTIPKEAAVRLRQLAQQGNATLLQLGILSVQVEGDEL 68
++ R+ ++PKE A R LAQQ A +++LG V GD L
Sbjct: 683 DASRILVSLPKENAARFVDLAQQCGAPVIRLG----AVGGDRL 721
>sp|B8JBS8|PURL_ANAD2 Phosphoribosylformylglycinamidine synthase 2 OS=Anaeromyxobacter
dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=purL PE=3
SV=1
Length = 759
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 26 NSVRVTFTIPKEAAVRLRQLAQQGNATLLQLGILSVQVEGDEL 68
++ R+ ++PKE A R LAQQ A +++LG V GD L
Sbjct: 683 DASRILVSLPKENAARFVDLAQQCGAPVIRLG----AVGGDRL 721
>sp|Q3B1L6|PIMT_PELLD Protein-L-isoaspartate O-methyltransferase OS=Pelodictyon luteolum
(strain DSM 273) GN=pcm PE=3 SV=1
Length = 222
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 2 KYLYKVCFNLG-GTEGINLRKVEPWNSVRVTFTIPKEAAVRLRQLAQQGNATLLQLGILS 60
++ V LG G+EG + P+N+V VT PKE LRQL+ G ++ LG +
Sbjct: 126 RFALPVAAKLGDGSEGWP--EEAPFNAVLVTAAAPKEPEALLRQLSDNG-CLVIPLGGMD 182
Query: 61 VQ 62
VQ
Sbjct: 183 VQ 184
>sp|Q2IHC1|PURL_ANADE Phosphoribosylformylglycinamidine synthase 2 OS=Anaeromyxobacter
dehalogenans (strain 2CP-C) GN=purL PE=3 SV=1
Length = 759
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 26 NSVRVTFTIPKEAAVRLRQLAQQGNATLLQLGILSVQVEGDEL 68
++ R+ ++PKE A R +LAQ+ A +++LG V GD L
Sbjct: 683 DASRILVSLPKENAARFVELAQECGAPVIRLG----AVGGDRL 721
>sp|A7GGL7|VATE_CLOBL V-type ATP synthase subunit E OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=atpE PE=3 SV=1
Length = 199
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 37 EAAVRLRQLAQQGNATLLQLGILSVQVEGDELIL 70
EA ++L+ L Q+ ++ ILS+ +EGDE I+
Sbjct: 89 EAVIKLQNLPQEEYLNFIKNSILSLDIEGDEEII 122
>sp|B1IJN1|VATE_CLOBK V-type proton ATPase subunit E OS=Clostridium botulinum (strain
Okra / Type B1) GN=atpE PE=3 SV=1
Length = 199
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 37 EAAVRLRQLAQQGNATLLQLGILSVQVEGDELIL 70
EA ++L+ L Q+ ++ ILS+ +EGDE I+
Sbjct: 89 EAVIKLQNLPQEEYLNFIKNSILSLDIEGDEEII 122
>sp|C1FTP0|VATE_CLOBJ V-type proton ATPase subunit E OS=Clostridium botulinum (strain
Kyoto / Type A2) GN=atpE PE=3 SV=1
Length = 199
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 37 EAAVRLRQLAQQGNATLLQLGILSVQVEGDELIL 70
EA ++L+ L Q+ ++ ILS+ +EGDE I+
Sbjct: 89 EAVIKLQNLPQEEYLNFIKNSILSLDIEGDEEII 122
>sp|B1KXT9|VATE_CLOBM V-type proton ATPase subunit E OS=Clostridium botulinum (strain
Loch Maree / Type A3) GN=atpE PE=3 SV=1
Length = 199
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 37 EAAVRLRQLAQQGNATLLQLGILSVQVEGDELIL 70
EA ++L+ L Q+ ++ ILS+ +EGDE I+
Sbjct: 89 EAVIKLQNLPQEEYLNFIKNSILSLDIEGDEEII 122
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,162,532
Number of Sequences: 539616
Number of extensions: 718260
Number of successful extensions: 1855
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1849
Number of HSP's gapped (non-prelim): 11
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)