Query psy12287
Match_columns 76
No_of_seqs 22 out of 24
Neff 1.9
Searched_HMMs 29240
Date Fri Aug 16 23:29:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cpg_A REPA protein, transcrip 94.1 0.067 2.3E-06 27.9 3.4 23 27-49 2-24 (45)
2 2k9i_A Plasmid PRN1, complete 93.4 0.08 2.7E-06 28.3 3.1 30 26-55 8-37 (55)
3 1p94_A Plasmid partition prote 86.9 0.33 1.1E-05 29.9 1.9 31 26-56 33-63 (76)
4 2gpe_A Bifunctional protein PU 86.7 0.96 3.3E-05 24.3 3.6 26 27-52 3-28 (52)
5 2k5j_A Uncharacterized protein 86.7 0.52 1.8E-05 28.4 2.7 24 27-50 9-32 (80)
6 2an7_A Protein PARD; bacterial 85.0 0.74 2.5E-05 30.0 3.0 28 28-55 2-29 (83)
7 2k6l_A Putative uncharacterize 83.8 1.4 4.6E-05 26.6 3.6 22 26-47 2-23 (51)
8 2hza_A Nickel-responsive regul 78.3 2.5 8.5E-05 27.2 3.7 23 28-50 2-24 (133)
9 2bj7_A Nickel responsive regul 75.9 2.4 8.1E-05 27.5 3.1 24 27-50 3-26 (138)
10 2wvf_A Hpnikr, putative nickel 75.2 2.6 8.9E-05 28.0 3.2 24 27-50 10-33 (148)
11 2kel_A SVTR protein, uncharact 72.6 4.9 0.00017 23.1 3.6 31 26-56 12-42 (56)
12 2ay0_A Bifunctional PUTA prote 72.3 5.1 0.00017 22.8 3.6 26 27-52 3-28 (58)
13 2jva_A Peptidyl-tRNA hydrolase 70.6 3.2 0.00011 26.9 2.7 50 11-65 22-76 (108)
14 1j26_A Immature colon carcinom 67.4 12 0.00043 24.2 5.1 50 11-65 29-84 (112)
15 1baz_A ARC repressor; transcri 66.5 7.3 0.00025 21.8 3.4 28 28-55 8-35 (53)
16 1uwd_A Hypothetical protein TM 65.1 1.5 5.2E-05 26.5 0.3 39 26-64 42-81 (103)
17 2w7n_A TRFB transcriptional re 64.2 9.2 0.00032 24.3 3.9 27 22-49 67-93 (101)
18 3lmb_A Uncharacterized protein 60.3 6 0.0002 26.4 2.6 34 35-68 7-40 (165)
19 2nxc_A L11 mtase, ribosomal pr 52.7 14 0.00049 24.4 3.4 32 28-66 2-33 (254)
20 2d2a_A SUFA protein; iron-sulf 50.5 15 0.00053 24.2 3.3 31 31-65 40-70 (145)
21 1r94_A Protein YFHF; tetrameri 50.1 11 0.00038 23.5 2.4 18 32-49 3-20 (118)
22 3lno_A Putative uncharacterize 49.0 4.6 0.00016 24.8 0.5 39 26-64 44-84 (108)
23 2nsc_A Trigger factor, TF; cha 47.2 15 0.00052 22.5 2.7 30 17-47 3-37 (109)
24 2bsq_E FITA, trafficking prote 44.3 21 0.00072 21.8 3.0 26 30-55 3-29 (77)
25 3cq1_A Putative uncharacterize 43.0 2.7 9.3E-05 25.4 -1.2 43 21-64 37-80 (103)
26 4dh9_Y YAEJ; ribosome, YAEJ, r 41.1 5.9 0.0002 26.7 0.1 50 11-65 22-76 (140)
27 1p9y_A Trigger factor, TF; alp 40.3 23 0.00079 22.1 2.8 31 16-47 5-40 (121)
28 2dt9_A Aspartokinase; protein- 39.2 71 0.0024 20.1 5.9 19 26-44 58-76 (167)
29 3qoq_A Alginate and motility r 39.0 28 0.00095 21.1 2.9 29 27-55 19-47 (69)
30 1k8k_G P16, ARP2/3 complex 16 37.0 10 0.00034 26.2 0.7 14 1-14 107-120 (151)
31 1nwb_A Hypothetical protein AQ 36.0 16 0.00054 23.0 1.5 21 30-50 8-28 (124)
32 2k4z_A DSRR; ISCA/SUFA/HESB li 35.9 19 0.00065 23.0 1.9 21 30-50 21-41 (125)
33 3ggz_E Vacuolar protein-sortin 35.3 15 0.00051 19.8 1.1 8 38-45 20-27 (29)
34 2ba3_A NIKA; dimer, bacterial 35.3 46 0.0016 17.5 3.1 29 25-53 13-41 (51)
35 3qbt_B Inositol polyphosphate 35.0 62 0.0021 20.6 4.3 40 21-66 85-126 (140)
36 3dwl_G Actin-related protein 2 32.8 10 0.00035 26.2 0.3 12 1-12 108-119 (152)
37 1q9j_A PAPA5, polyketide synth 32.5 35 0.0012 22.7 2.8 27 27-53 211-237 (422)
38 1l5a_A Amide synthase, VIBH; n 32.3 45 0.0015 22.5 3.4 28 26-53 207-234 (436)
39 1mli_A Muconolactone isomerase 32.1 51 0.0017 21.2 3.5 33 27-59 4-40 (96)
40 3kxe_C Antitoxin protein PARD- 30.1 36 0.0012 21.0 2.4 23 27-49 3-25 (88)
41 3s1t_A Aspartokinase; ACT doma 29.1 1.2E+02 0.0042 19.8 5.6 20 26-45 58-77 (181)
42 2kic_A Nitrogenase gamma subun 26.9 18 0.00063 23.9 0.7 15 32-46 7-21 (98)
43 2d3o_1 Trigger factor, TF; rib 26.8 26 0.00089 21.6 1.3 30 17-48 3-37 (112)
44 3h87_C Putative uncharacterize 26.7 32 0.0011 21.2 1.7 23 33-55 8-30 (73)
45 2jgp_A Tyrocidine synthetase 3 26.5 66 0.0023 22.6 3.5 28 25-52 301-328 (520)
46 2adl_A CCDA; ribbon-helix-heli 26.5 18 0.00061 21.6 0.5 25 29-53 4-28 (72)
47 2uwj_G Type III export protein 26.2 40 0.0014 23.0 2.3 21 36-56 85-105 (115)
48 3q1p_A Phosphohydrolase (MUTT/ 25.7 29 0.00098 22.3 1.4 14 37-50 7-20 (205)
49 2bjo_A Organic hydroperoxide r 25.6 91 0.0031 18.9 3.7 30 27-56 93-125 (136)
50 2apn_A Protein HI1723; HI1723 25.2 35 0.0012 20.7 1.7 18 31-48 8-25 (114)
51 3e19_A FEOA; transcriptional r 25.2 63 0.0022 18.0 2.7 37 3-41 30-71 (77)
52 1t11_A Trigger factor, TF; hel 25.0 53 0.0018 24.2 2.9 31 16-47 5-40 (392)
53 3dwl_F Actin-related protein 2 24.7 31 0.0011 24.7 1.5 12 25-36 67-78 (168)
54 3e8p_A Uncharacterized protein 24.0 77 0.0026 19.9 3.2 34 34-67 15-48 (164)
55 1nd7_A WW domain-containing pr 23.4 47 0.0016 24.5 2.4 40 29-70 23-64 (374)
56 1qwi_A OSMC, osmotically induc 23.3 1.2E+02 0.0039 18.7 3.9 30 28-57 100-132 (143)
57 1k8k_F P20, ARP2/3 complex 20 23.0 35 0.0012 24.4 1.5 12 25-36 67-78 (168)
58 2fot_C Alpha-II spectrin spect 23.0 5.4 0.00018 23.2 -2.2 10 21-30 19-28 (42)
59 1usp_A Organic hydroperoxide r 22.4 1.1E+02 0.0039 18.5 3.7 29 28-56 96-127 (139)
60 2p58_C Putative type III secre 22.4 40 0.0014 23.0 1.7 20 37-56 87-106 (116)
61 3l76_A Aspartokinase; alloster 21.4 1.7E+02 0.0059 22.8 5.3 28 26-53 310-337 (600)
62 2pk0_A Serine/threonine protei 21.2 74 0.0025 20.3 2.7 32 35-67 218-249 (250)
No 1
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=94.05 E-value=0.067 Score=27.89 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.6
Q ss_pred eeEEEEeccHHHHHHHHHHHHhC
Q psy12287 27 SVRVTFTIPKEAAVRLRQLAQQG 49 (76)
Q Consensus 27 SVRVTf~IPreAA~rLr~LA~~g 49 (76)
..|+||+||.+-.++|.++|+..
T Consensus 2 k~ritv~l~~~l~~~Ld~~a~~~ 24 (45)
T 2cpg_A 2 KKRLTITLSESVLENLEKMAREM 24 (45)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHH
T ss_pred CceEEEecCHHHHHHHHHHHHHH
Confidence 36899999999999999999863
No 2
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=93.41 E-value=0.08 Score=28.34 Aligned_cols=30 Identities=33% Similarity=0.470 Sum_probs=25.2
Q ss_pred ceeEEEEeccHHHHHHHHHHHHhCChhhhh
Q psy12287 26 NSVRVTFTIPKEAAVRLRQLAQQGNATLLQ 55 (76)
Q Consensus 26 nSVRVTf~IPreAA~rLr~LA~~g~~~Lr~ 55 (76)
.+++++|.||.|-.++|..+|...+-...+
T Consensus 8 ~~~~i~vrl~~el~~~l~~~a~~~g~s~s~ 37 (55)
T 2k9i_A 8 NGIKLGVYIPQEWHDRLMEIAKEKNLTLSD 37 (55)
T ss_dssp CCEEEEEEECHHHHHHHHHHHHHHTCCHHH
T ss_pred ccceEEEEcCHHHHHHHHHHHHHhCCCHHH
Confidence 689999999999999999999876544433
No 3
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=86.86 E-value=0.33 Score=29.91 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=27.2
Q ss_pred ceeEEEEeccHHHHHHHHHHHHhCChhhhhc
Q psy12287 26 NSVRVTFTIPKEAAVRLRQLAQQGNATLLQL 56 (76)
Q Consensus 26 nSVRVTf~IPreAA~rLr~LA~~g~~~Lr~L 56 (76)
...|+||.||.+=-.||+.+|+..+-.+.++
T Consensus 33 ~~~Rlti~i~~~lh~rlK~~Aa~~g~Smsdv 63 (76)
T 1p94_A 33 KIKRVNVNFDEEKHTRFKAACARKGTSITDV 63 (76)
T ss_dssp CEEECCEEEEHHHHHHHHHHHHHHTCCHHHH
T ss_pred CceeEEEEcCHHHHHHHHHHHHHcCCCHHHH
Confidence 5699999999999999999999988776653
No 4
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=86.74 E-value=0.96 Score=24.31 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=22.5
Q ss_pred eeEEEEeccHHHHHHHHHHHHhCChh
Q psy12287 27 SVRVTFTIPKEAAVRLRQLAQQGNAT 52 (76)
Q Consensus 27 SVRVTf~IPreAA~rLr~LA~~g~~~ 52 (76)
.-.+||.||.+-.++|..+|+..+..
T Consensus 3 ~~~~sirl~~~l~~~l~~lA~~~~rs 28 (52)
T 2gpe_A 3 TTTMGVKLDDATRERIKSAATRIDRT 28 (52)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHTTCC
T ss_pred cceEEEECCHHHHHHHHHHHHHHCcC
Confidence 45799999999999999999987654
No 5
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=86.70 E-value=0.52 Score=28.40 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.3
Q ss_pred eeEEEEeccHHHHHHHHHHHHhCC
Q psy12287 27 SVRVTFTIPKEAAVRLRQLAQQGN 50 (76)
Q Consensus 27 SVRVTf~IPreAA~rLr~LA~~g~ 50 (76)
-.|+|++||.|-.++|..||+..+
T Consensus 9 m~risI~Lpdel~~~Ld~la~~~g 32 (80)
T 2k5j_A 9 MGRILLDLSNEVIKQLDDLEVQRN 32 (80)
T ss_dssp CCEEEEEECHHHHHHHHHHHHHHT
T ss_pred eEEEEEECCHHHHHHHHHHHHHhC
Confidence 469999999999999999997654
No 6
>2an7_A Protein PARD; bacterial antidote, ribbon-helix-helix, DNA-binding motif, plasmid addiction, DNA binding protein; NMR {Escherichia coli}
Probab=84.99 E-value=0.74 Score=30.04 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=23.2
Q ss_pred eEEEEeccHHHHHHHHHHHHhCChhhhh
Q psy12287 28 VRVTFTIPKEAAVRLRQLAQQGNATLLQ 55 (76)
Q Consensus 28 VRVTf~IPreAA~rLr~LA~~g~~~Lr~ 55 (76)
.|+||.||.+-.+||+.||+..-...++
T Consensus 2 SrLTIrLpd~qH~rLKalAa~qG~SInq 29 (83)
T 2an7_A 2 SRLTIDMTDQQHQSLKALAALQGKTIKQ 29 (83)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHTSCHHH
T ss_pred ceeeEeCCHHHHHHHHHHHHHcCCcHHH
Confidence 4899999999999999999876544443
No 7
>2k6l_A Putative uncharacterized protein; xanthonomas axonopodis, RHH, structural proteomics, plasmid, hypothetical DNA binding protein; NMR {Xanthomonas axonopodis PV}
Probab=83.77 E-value=1.4 Score=26.55 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.8
Q ss_pred ceeEEEEeccHHHHHHHHHHHH
Q psy12287 26 NSVRVTFTIPKEAAVRLRQLAQ 47 (76)
Q Consensus 26 nSVRVTf~IPreAA~rLr~LA~ 47 (76)
|+||.|++|+.|-.++||...+
T Consensus 2 ~~~r~tv~vs~d~d~~lR~~l~ 23 (51)
T 2k6l_A 2 NTVRWNIAVSPDVDQSVRMFIA 23 (51)
T ss_dssp CCEEEEEEECHHHHHHHHHHHH
T ss_pred CceEEEEEeCHHHHHHHHHHHH
Confidence 7899999999999999998654
No 8
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=78.32 E-value=2.5 Score=27.21 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=21.0
Q ss_pred eEEEEeccHHHHHHHHHHHHhCC
Q psy12287 28 VRVTFTIPKEAAVRLRQLAQQGN 50 (76)
Q Consensus 28 VRVTf~IPreAA~rLr~LA~~g~ 50 (76)
.|++|++|.+-.++|.++++++.
T Consensus 2 ~risVsLp~~ll~~lD~~v~~~~ 24 (133)
T 2hza_A 2 QRVTITLDDDLLETLDSLSQRRG 24 (133)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTT
T ss_pred eEEEEEECHHHHHHHHHHHHHcC
Confidence 58999999999999999998776
No 9
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=75.90 E-value=2.4 Score=27.45 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=21.4
Q ss_pred eeEEEEeccHHHHHHHHHHHHhCC
Q psy12287 27 SVRVTFTIPKEAAVRLRQLAQQGN 50 (76)
Q Consensus 27 SVRVTf~IPreAA~rLr~LA~~g~ 50 (76)
..|+||++|.+-.++|.++++++.
T Consensus 3 ~~risVsLp~~l~~~ld~~v~~~~ 26 (138)
T 2bj7_A 3 LIRFSISIPSKLLEKFDQIIEEIG 26 (138)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHT
T ss_pred cEEEEEEeCHHHHHHHHHHHHHcC
Confidence 469999999999999999998754
No 10
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 3pht_A 2ca9_A 2cad_A* 2caj_A 3lgh_A 2wvd_A 2wve_A* 2wvb_A 2y3y_A* 3qsi_B
Probab=75.15 E-value=2.6 Score=27.95 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=21.6
Q ss_pred eeEEEEeccHHHHHHHHHHHHhCC
Q psy12287 27 SVRVTFTIPKEAAVRLRQLAQQGN 50 (76)
Q Consensus 27 SVRVTf~IPreAA~rLr~LA~~g~ 50 (76)
..|+||++|.+-.++|.++++++.
T Consensus 10 ~~risVsLp~~ll~~lD~~v~~~~ 33 (148)
T 2wvf_A 10 IIRFSVSLQQNLLDELDNRIIKNG 33 (148)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHT
T ss_pred cEEEEEEeCHHHHHHHHHHHHHcC
Confidence 679999999999999999998754
No 11
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=72.60 E-value=4.9 Score=23.07 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=26.9
Q ss_pred ceeEEEEeccHHHHHHHHHHHHhCChhhhhc
Q psy12287 26 NSVRVTFTIPKEAAVRLRQLAQQGNATLLQL 56 (76)
Q Consensus 26 nSVRVTf~IPreAA~rLr~LA~~g~~~Lr~L 56 (76)
.|.+++|.||.|==.|+..+|+..+..+.++
T Consensus 12 ~kg~~~vrId~eLH~rlk~~Aa~~g~Sln~~ 42 (56)
T 2kel_A 12 QKAVFGIYMDKDLKTRLKVYCAKNNLQLTQA 42 (56)
T ss_dssp CEEEEEEEEEHHHHHHHHHHHHHSCCCHHHH
T ss_pred CeeeEEEEeCHHHHHHHHHHHHHcCCCHHHH
Confidence 3889999999999999999999988777653
No 12
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=72.35 E-value=5.1 Score=22.83 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=22.2
Q ss_pred eeEEEEeccHHHHHHHHHHHHhCChh
Q psy12287 27 SVRVTFTIPKEAAVRLRQLAQQGNAT 52 (76)
Q Consensus 27 SVRVTf~IPreAA~rLr~LA~~g~~~ 52 (76)
+-.+||.||.+=.+||.+||+.-+..
T Consensus 3 ~~~~svrL~~el~~rL~~lA~~~~rs 28 (58)
T 2ay0_A 3 TTTMGVMLDDATRERIKSAATRIDRT 28 (58)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHTTCC
T ss_pred CcceEeECCHHHHHHHHHHHHHHCcC
Confidence 45689999999999999999986643
No 13
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=70.55 E-value=3.2 Score=26.95 Aligned_cols=50 Identities=22% Similarity=0.412 Sum_probs=37.1
Q ss_pred CCCCcCeeeeeecCCceeEEEEe-----ccHHHHHHHHHHHHhCChhhhhcceeEEEecc
Q psy12287 11 LGGTEGINLRKVEPWNSVRVTFT-----IPKEAAVRLRQLAQQGNATLLQLGILSVQVEG 65 (76)
Q Consensus 11 ~~~~~~l~v~kvEPWnSVRVTf~-----IPreAA~rLr~LA~~g~~~Lr~LGILSVQ~EG 65 (76)
.+++++=.|+|++- -|+++|+ ||.+.-+||..++ ..-+..=|.+.|+-..
T Consensus 22 ssGpGGQnVNKv~S--aV~L~~d~~~s~lP~~~k~rl~~~~---~~ri~~~G~ivv~~q~ 76 (108)
T 2jva_A 22 AQGAGGQNVNKVSS--AMHLRFDINASSLPPFYKERLLALN---DSRITSDGVIVLKAQQ 76 (108)
T ss_dssp CTTCSSSSSCCCCC--CEEEEEETTTSCCCHHHHHHHHTCS---CTTBCTTCEEEEEECC
T ss_pred CCCCCCCCcCCCcc--eEEEEEEcccccCCHHHHHHHHHHh---ccccccCCcEEEEECC
Confidence 56788889999997 9999995 8988888876543 3345556877776543
No 14
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=67.43 E-value=12 Score=24.24 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=35.2
Q ss_pred CCCCcCeeeeeecCCceeEEEEeccH------HHHHHHHHHHHhCChhhhhcceeEEEecc
Q psy12287 11 LGGTEGINLRKVEPWNSVRVTFTIPK------EAAVRLRQLAQQGNATLLQLGILSVQVEG 65 (76)
Q Consensus 11 ~~~~~~l~v~kvEPWnSVRVTf~IPr------eAA~rLr~LA~~g~~~Lr~LGILSVQ~EG 65 (76)
-+++++=.|||++- -|+++|.||. +.-+||..+ ...-+..=|.+.|+-..
T Consensus 29 ssGpGGQnVNKv~S--aV~Lrf~i~t~~~Lp~~~k~rl~~~---~~~ri~~~G~ivv~~q~ 84 (112)
T 1j26_A 29 SSGPGGQNVNKVNS--KAEVRFHLASADWIEEPVRQKIALT---HKNKINKAGELVLTSES 84 (112)
T ss_dssp CCCSSSSCCSSCCC--EEEEEEEGGGCTTSCHHHHHHHHHH---TTTTBCSSSEEEEEECC
T ss_pred CCCCCCCCccCCcc--eEEEEEeccccccCCHHHHHHHHHh---hccccccCCeEEEEECC
Confidence 46778889999997 9999998876 344454443 33456777877777654
No 15
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=66.49 E-value=7.3 Score=21.76 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=24.3
Q ss_pred eEEEEeccHHHHHHHHHHHHhCChhhhh
Q psy12287 28 VRVTFTIPKEAAVRLRQLAQQGNATLLQ 55 (76)
Q Consensus 28 VRVTf~IPreAA~rLr~LA~~g~~~Lr~ 55 (76)
-++|+-||.|=-.+|+.+|+.....+.+
T Consensus 8 ~~~~lRlp~eL~~~l~~~A~~~grS~N~ 35 (53)
T 1baz_A 8 PQVNLRWPREVLDLVRKVAEENGRSVNS 35 (53)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCCHHH
T ss_pred CeeEEECCHHHHHHHHHHHHHcCCCHHH
Confidence 4688999999999999999998877654
No 16
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=65.06 E-value=1.5 Score=26.53 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=27.4
Q ss_pred ceeEEEEeccHHHHHHHHHHHHhCChhhhhc-ceeEEEec
Q psy12287 26 NSVRVTFTIPKEAAVRLRQLAQQGNATLLQL-GILSVQVE 64 (76)
Q Consensus 26 nSVRVTf~IPreAA~rLr~LA~~g~~~Lr~L-GILSVQ~E 64 (76)
+.|+|++++|-.++.-...|.+.=..+|+++ |+-+|+++
T Consensus 42 ~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~ 81 (103)
T 1uwd_A 42 NNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVE 81 (103)
T ss_dssp CEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEE
Confidence 4788888888765544455555555678886 88888775
No 17
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=64.23 E-value=9.2 Score=24.34 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=23.4
Q ss_pred ecCCceeEEEEeccHHHHHHHHHHHHhC
Q psy12287 22 VEPWNSVRVTFTIPKEAAVRLRQLAQQG 49 (76)
Q Consensus 22 vEPWnSVRVTf~IPreAA~rLr~LA~~g 49 (76)
+.| .-+||++.+|.+-|...+++|++.
T Consensus 67 ~P~-g~~rv~v~lP~~~a~~v~~~~~~a 93 (101)
T 2w7n_A 67 LPE-GYARVTAVLPEHQAYIVRKWEADA 93 (101)
T ss_dssp CCT-TEEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCC-CeeEEeeecCHHHHHHHHHHHHHH
Confidence 334 789999999999999999999864
No 18
>3lmb_A Uncharacterized protein; protein OLEI01261, unknown function, chlorobaculum tepidum T structural genomics, PSI2, MCSG; HET: MSE; 2.10A {Oleispira antarctica rb-8} SCOP: d.38.1.0
Probab=60.29 E-value=6 Score=26.38 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHHHhCChhhhhcceeEEEecchhH
Q psy12287 35 PKEAAVRLRQLAQQGNATLLQLGILSVQVEGDEL 68 (76)
Q Consensus 35 PreAA~rLr~LA~~g~~~Lr~LGILSVQ~EGd~~ 68 (76)
|.+.|++|++.--+..|-.+.+||--++++++.+
T Consensus 7 p~~~~~~l~~~l~~~iP~~~~~Gi~i~~~~~~~~ 40 (165)
T 3lmb_A 7 PDQVSKKLKQFFSDHLPISQFMGLEIESYDGDTL 40 (165)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHTCEEEEECSSEE
T ss_pred HHHHHHHHHHHHHhcCchHHhCCcEEEEEcCCEE
Confidence 8999999999999999999999999888887654
No 19
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=52.70 E-value=14 Score=24.42 Aligned_cols=32 Identities=13% Similarity=-0.100 Sum_probs=25.8
Q ss_pred eEEEEeccHHHHHHHHHHHHhCChhhhhcceeEEEecch
Q psy12287 28 VRVTFTIPKEAAVRLRQLAQQGNATLLQLGILSVQVEGD 66 (76)
Q Consensus 28 VRVTf~IPreAA~rLr~LA~~g~~~Lr~LGILSVQ~EGd 66 (76)
.++++..|.++++.+..+ |-++|+.+|.+|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~-------l~~~g~~~~~~~~~ 33 (254)
T 2nxc_A 2 WVYRLKGTLEALDPILPG-------LFDGGARGLWEREG 33 (254)
T ss_dssp EEEEEESCHHHHGGGHHH-------HHHTTCCEEEEETT
T ss_pred EEEEEEcCHHHHHHHHHH-------HHhhCCCEEEEECC
Confidence 478999999999887654 55789999998864
No 20
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=50.45 E-value=15 Score=24.20 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=20.9
Q ss_pred EEeccHHHHHHHHHHHHhCChhhhhcceeEEEecc
Q psy12287 31 TFTIPKEAAVRLRQLAQQGNATLLQLGILSVQVEG 65 (76)
Q Consensus 31 Tf~IPreAA~rLr~LA~~g~~~Lr~LGILSVQ~EG 65 (76)
.++|-..||++|++|.++.++ ..| |.|-+++
T Consensus 40 ~ItiTe~Aa~~lk~ll~~~~~---~~~-LRv~V~~ 70 (145)
T 2d2a_A 40 GLTLTPAAAIHIRELVAKQPG---MVG-VRLGVKQ 70 (145)
T ss_dssp CCEECHHHHHHHHHHHHHSTT---CCE-EEEEEEE
T ss_pred eEEECHHHHHHHHHHHhcCCC---Cce-EEEEEEC
Confidence 377889999999988876532 222 4555554
No 21
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Probab=50.06 E-value=11 Score=23.45 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=14.6
Q ss_pred EeccHHHHHHHHHHHHhC
Q psy12287 32 FTIPKEAAVRLRQLAQQG 49 (76)
Q Consensus 32 f~IPreAA~rLr~LA~~g 49 (76)
++|-..||++|++|.+..
T Consensus 3 I~iT~~A~~~l~~ll~~~ 20 (118)
T 1r94_A 3 ITLSDSAAARVNTFLANR 20 (118)
T ss_dssp CEECHHHHHHHHHHHHHH
T ss_pred eEECHHHHHHHHHHHhhC
Confidence 678899999999887543
No 22
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=48.96 E-value=4.6 Score=24.83 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=25.5
Q ss_pred ceeEEEEeccHHHHHHHHHHHHhCChhh-hhc-ceeEEEec
Q psy12287 26 NSVRVTFTIPKEAAVRLRQLAQQGNATL-LQL-GILSVQVE 64 (76)
Q Consensus 26 nSVRVTf~IPreAA~rLr~LA~~g~~~L-r~L-GILSVQ~E 64 (76)
+.|+|++++|-.+......|.+.=..+| +++ |+-+|.++
T Consensus 44 ~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~ 84 (108)
T 3lno_A 44 NNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVN 84 (108)
T ss_dssp CCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEE
T ss_pred CeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 4688888887665544455555555677 665 88777664
No 23
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=47.22 E-value=15 Score=22.52 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=22.0
Q ss_pred eeeeeecCCceeEEEEeccHHHH-----HHHHHHHH
Q psy12287 17 INLRKVEPWNSVRVTFTIPKEAA-----VRLRQLAQ 47 (76)
Q Consensus 17 l~v~kvEPWnSVRVTf~IPreAA-----~rLr~LA~ 47 (76)
.++.+.++ +.+++|++||.+-- .+|+.+|.
T Consensus 3 v~~e~~~~-~~~~l~v~v~~~~~~~~~~~~~~~~~k 37 (109)
T 2nsc_A 3 VKELERDK-NRVVLEYVFGAEEIAQAEDKAVRYLNQ 37 (109)
T ss_dssp EEEEEEET-TEEEEEEECCHHHHHHHHHHHHHHHHT
T ss_pred eEEEEcCC-CEEEEEEEECHHHHHHHHHHHHHHHhc
Confidence 46778888 88999999998754 34555553
No 24
>2bsq_E FITA, trafficking protein A; transcription, transcription regulation complex, PIN domain, ribbon-helix-helix, DNA binding; HET: 5IU; 3.0A {Neisseria gonorrhoeae} SCOP: a.43.1.8 PDB: 2h1o_E*
Probab=44.33 E-value=21 Score=21.81 Aligned_cols=26 Identities=8% Similarity=0.098 Sum_probs=21.3
Q ss_pred EEEe-ccHHHHHHHHHHHHhCChhhhh
Q psy12287 30 VTFT-IPKEAAVRLRQLAQQGNATLLQ 55 (76)
Q Consensus 30 VTf~-IPreAA~rLr~LA~~g~~~Lr~ 55 (76)
+|+- ||.|-..+|+..|+.+...+.+
T Consensus 3 ltIRnlpd~~~~~Lk~rAa~~GrSle~ 29 (77)
T 2bsq_E 3 VVIRNLSEATHNAIKFRARAAGRSTEA 29 (77)
T ss_dssp EEECSCCHHHHHHHHHHHHHTTCCHHH
T ss_pred ceecCCCHHHHHHHHHHHHHhCCCHHH
Confidence 4554 9999999999999998776654
No 25
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=42.99 E-value=2.7 Score=25.44 Aligned_cols=43 Identities=28% Similarity=0.349 Sum_probs=27.6
Q ss_pred eecCCceeEEEEeccHHHHHHHHHHHHhCChhhhhc-ceeEEEec
Q psy12287 21 KVEPWNSVRVTFTIPKEAAVRLRQLAQQGNATLLQL-GILSVQVE 64 (76)
Q Consensus 21 kvEPWnSVRVTf~IPreAA~rLr~LA~~g~~~Lr~L-GILSVQ~E 64 (76)
.++. +.|+|++++|-.++.-...|.+.=..+|+++ |+-+|+++
T Consensus 37 ~v~~-~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~ 80 (103)
T 3cq1_A 37 VVEP-PRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVE 80 (103)
T ss_dssp EEET-TEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEE
T ss_pred EEEC-CEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEE
Confidence 3443 5788888888755443444444445677775 88888775
No 26
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=41.11 E-value=5.9 Score=26.66 Aligned_cols=50 Identities=16% Similarity=0.363 Sum_probs=36.8
Q ss_pred CCCCcCeeeeeecCCceeEEEE-----eccHHHHHHHHHHHHhCChhhhhcceeEEEecc
Q psy12287 11 LGGTEGINLRKVEPWNSVRVTF-----TIPKEAAVRLRQLAQQGNATLLQLGILSVQVEG 65 (76)
Q Consensus 11 ~~~~~~l~v~kvEPWnSVRVTf-----~IPreAA~rLr~LA~~g~~~Lr~LGILSVQ~EG 65 (76)
-+++++=.|||++- -|+++| .||.+.-+||..+. ..-+..=|.+.|+-..
T Consensus 22 ssGpGGQnVNKv~S--aV~L~~~~~~s~lp~~~k~rL~~~~---~~rit~~G~ivv~~q~ 76 (140)
T 4dh9_Y 22 AQGAGGQHVNKTST--AIHLRFDIRASSLPEYYKERLLAAS---HHLISSDGVIVIKAQE 76 (140)
T ss_dssp CCSSSSHHHHTTCC--CEEEEECCSSSSSCSHHHHHHHSCC---CTTSCSSCCCCEEECC
T ss_pred CCCCCCCccccccc--eEEEEEecccccCCHHHHHHHHHHh---ccccccCCcEEEEEcC
Confidence 46678889999996 999999 68998888887653 2345555867776654
No 27
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=40.33 E-value=23 Score=22.14 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=22.9
Q ss_pred CeeeeeecCCceeEEEEeccHHHHH-----HHHHHHH
Q psy12287 16 GINLRKVEPWNSVRVTFTIPKEAAV-----RLRQLAQ 47 (76)
Q Consensus 16 ~l~v~kvEPWnSVRVTf~IPreAA~-----rLr~LA~ 47 (76)
..++.+.++ +.+++|++||.+--+ +|+.+|.
T Consensus 5 ~v~~e~~~~-~~~~l~v~v~~~~~~~~~~~~~~~~~k 40 (121)
T 1p9y_A 5 QVSVETTQG-LGRRVTITIAADSIETAVKSELVNVAK 40 (121)
T ss_dssp EEEEEECST-TEEEEEEEECHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCC-cEEEEEEEECHHHHHHHHHHHHHHHHh
Confidence 356788898 899999999987543 4555553
No 28
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=39.16 E-value=71 Score=20.10 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=12.9
Q ss_pred ceeEEEEeccHHHHHHHHH
Q psy12287 26 NSVRVTFTIPKEAAVRLRQ 44 (76)
Q Consensus 26 nSVRVTf~IPreAA~rLr~ 44 (76)
..+.++|++|++-+++.++
T Consensus 58 g~~~isf~V~~~d~~~a~~ 76 (167)
T 2dt9_A 58 SRQQMAFTVKKDFAQEALE 76 (167)
T ss_dssp TEEEEEEEEEGGGHHHHHH
T ss_pred CceEEEEEEehHHHHHHHH
Confidence 3678999999765554433
No 29
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=38.98 E-value=28 Score=21.07 Aligned_cols=29 Identities=7% Similarity=0.237 Sum_probs=25.7
Q ss_pred eeEEEEeccHHHHHHHHHHHHhCChhhhh
Q psy12287 27 SVRVTFTIPKEAAVRLRQLAQQGNATLLQ 55 (76)
Q Consensus 27 SVRVTf~IPreAA~rLr~LA~~g~~~Lr~ 55 (76)
+-++++.||.+=-++|+..|+++...+.+
T Consensus 19 ~~kf~LRlP~eL~~~L~~~A~~~grSlNa 47 (69)
T 3qoq_A 19 ADKFVVRLPEGMREQIAEVARSHHRSMNS 47 (69)
T ss_dssp SEEEEEECCTTHHHHHHHHHHHTTCCHHH
T ss_pred CCceEEECCHHHHHHHHHHHHHhCCCHHH
Confidence 56899999999999999999999877754
No 30
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=36.97 E-value=10 Score=26.23 Aligned_cols=14 Identities=36% Similarity=0.494 Sum_probs=11.6
Q ss_pred ChhhHHHhhcCCCC
Q psy12287 1 MKYLYKVCFNLGGT 14 (76)
Q Consensus 1 ~~~~~~~c~~~~~~ 14 (76)
||||||--+.+.+.
T Consensus 107 MKYiYkGm~~~~~~ 120 (151)
T 1k8k_G 107 MKYIYKGFESPSDN 120 (151)
T ss_dssp HHHHHHHHTSCCTT
T ss_pred HHHHHHhhcCcCCC
Confidence 89999988877764
No 31
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1
Probab=36.00 E-value=16 Score=23.02 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=16.5
Q ss_pred EEEeccHHHHHHHHHHHHhCC
Q psy12287 30 VTFTIPKEAAVRLRQLAQQGN 50 (76)
Q Consensus 30 VTf~IPreAA~rLr~LA~~g~ 50 (76)
..++|...||.+|+++.+..+
T Consensus 8 m~I~iT~~A~~~l~~ll~~~~ 28 (124)
T 1nwb_A 8 FIFKVTDKAVEEIKKVAQENN 28 (124)
T ss_dssp CCCEECHHHHHHHHHHHHTTT
T ss_pred ceEEECHHHHHHHHHHHhhCC
Confidence 347888999999998876543
No 32
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}
Probab=35.94 E-value=19 Score=22.95 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=16.6
Q ss_pred EEEeccHHHHHHHHHHHHhCC
Q psy12287 30 VTFTIPKEAAVRLRQLAQQGN 50 (76)
Q Consensus 30 VTf~IPreAA~rLr~LA~~g~ 50 (76)
..++|-..||++|+++.++.+
T Consensus 21 m~ItiT~~Aa~~ik~ll~~~~ 41 (125)
T 2k4z_A 21 MMFKLTPAAAEQVLKAAKQGG 41 (125)
T ss_dssp SCEEECHHHHHHHHHHHHHSS
T ss_pred CEEEECHHHHHHHHHHHhhCC
Confidence 457888999999998876543
No 33
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=35.34 E-value=15 Score=19.81 Aligned_cols=8 Identities=63% Similarity=0.704 Sum_probs=6.1
Q ss_pred HHHHHHHH
Q psy12287 38 AAVRLRQL 45 (76)
Q Consensus 38 AA~rLr~L 45 (76)
=|+|||.|
T Consensus 20 LAqRLRAL 27 (29)
T 3ggz_E 20 LAQRLRAL 27 (29)
T ss_pred HHHHHHHH
Confidence 48888876
No 34
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=35.26 E-value=46 Score=17.53 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=23.9
Q ss_pred CceeEEEEeccHHHHHHHHHHHHhCChhh
Q psy12287 25 WNSVRVTFTIPKEAAVRLRQLAQQGNATL 53 (76)
Q Consensus 25 WnSVRVTf~IPreAA~rLr~LA~~g~~~L 53 (76)
..+.+|+|-+..|-.+.|++.|...+-.+
T Consensus 13 ~r~~~i~vRlt~eE~~~l~~~A~~~g~s~ 41 (51)
T 2ba3_A 13 QKTVVRTLRFSPVEDETIRKKAEDSGLTV 41 (51)
T ss_dssp CCSEEEEEEECHHHHHHHHHHHHHHTCCH
T ss_pred cCceeEEEEECHHHHHHHHHHHHHhCCCH
Confidence 36789999999999999999998755433
No 35
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=35.04 E-value=62 Score=20.55 Aligned_cols=40 Identities=20% Similarity=0.421 Sum_probs=25.6
Q ss_pred eecCCceeEEEEecc--HHHHHHHHHHHHhCChhhhhcceeEEEecch
Q psy12287 21 KVEPWNSVRVTFTIP--KEAAVRLRQLAQQGNATLLQLGILSVQVEGD 66 (76)
Q Consensus 21 kvEPWnSVRVTf~IP--reAA~rLr~LA~~g~~~Lr~LGILSVQ~EGd 66 (76)
-++|-.++.|++++= ...|..|. .|...|.+ ||-..+||+
T Consensus 85 ~L~Pge~~~I~v~~~v~~~~~~~ln----~g~~~l~d--iLvL~Ve~G 126 (140)
T 3qbt_B 85 YLEPNETVDISLDVYVSKDSVTILN----SGEDKIED--ILVLHLDRG 126 (140)
T ss_dssp EECTTCEEEEEEEECBCHHHHHHHH----HSSSCSCE--EEEEEETTS
T ss_pred ccCCCCeeEEEEEEEEccCcccccc----cchhhhhe--eEEEEeecC
Confidence 577877776665553 56666554 37777776 566666654
No 36
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=32.81 E-value=10 Score=26.25 Aligned_cols=12 Identities=17% Similarity=0.395 Sum_probs=8.7
Q ss_pred ChhhHHHhhcCC
Q psy12287 1 MKYLYKVCFNLG 12 (76)
Q Consensus 1 ~~~~~~~c~~~~ 12 (76)
||||||--+.+.
T Consensus 108 MKYiYkGm~~~~ 119 (152)
T 3dwl_G 108 VNFIYRGLANPQ 119 (152)
T ss_dssp HHHHHHHTTC--
T ss_pred HHHHHHhccCcc
Confidence 899999877664
No 37
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=32.45 E-value=35 Score=22.74 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=22.2
Q ss_pred eeEEEEeccHHHHHHHHHHHHhCChhh
Q psy12287 27 SVRVTFTIPKEAAVRLRQLAQQGNATL 53 (76)
Q Consensus 27 SVRVTf~IPreAA~rLr~LA~~g~~~L 53 (76)
.-++++.+|.+...+|+++|...+-++
T Consensus 211 ~~~~~~~l~~~~~~~l~~~a~~~~~t~ 237 (422)
T 1q9j_A 211 VPVTRLWLSKQQTSDLMAFGREHRLSL 237 (422)
T ss_dssp CCEEEECCCHHHHHHHHHHHTTTTCCH
T ss_pred ccceEEEeCHHHHHHHHHHHHHhCCCH
Confidence 357899999999999999998766543
No 38
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=32.29 E-value=45 Score=22.52 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=23.1
Q ss_pred ceeEEEEeccHHHHHHHHHHHHhCChhh
Q psy12287 26 NSVRVTFTIPKEAAVRLRQLAQQGNATL 53 (76)
Q Consensus 26 nSVRVTf~IPreAA~rLr~LA~~g~~~L 53 (76)
...++++.||.+...+|+.+|.+.+-++
T Consensus 207 ~~~~~~~~l~~~~~~~l~~~a~~~~~t~ 234 (436)
T 1l5a_A 207 HAVSLSYTLNSQLNHLLLKLANANQIGW 234 (436)
T ss_dssp CEEEEEEECCHHHHHHHHHHHHHTTCCH
T ss_pred cceeeEEecCHHHHHHHHHHHHHhCCCH
Confidence 3468999999999999999998866443
No 39
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=32.07 E-value=51 Score=21.22 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=18.7
Q ss_pred eeEEEEeccH----HHHHHHHHHHHhCChhhhhccee
Q psy12287 27 SVRVTFTIPK----EAAVRLRQLAQQGNATLLQLGIL 59 (76)
Q Consensus 27 SVRVTf~IPr----eAA~rLr~LA~~g~~~Lr~LGIL 59 (76)
-|++|+++|. +.+.+++.==++..++|.+=|.+
T Consensus 4 lV~m~V~~P~~~~~~~~~~~~a~Eka~a~eLq~~G~~ 40 (96)
T 1mli_A 4 HVKMTVKLPVDMDPAKATQLKADEKELAQRLQREGTW 40 (96)
T ss_pred EEEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHhCCee
Confidence 3788888775 34445544444445555555543
No 40
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=30.12 E-value=36 Score=20.97 Aligned_cols=23 Identities=9% Similarity=0.109 Sum_probs=17.8
Q ss_pred eeEEEEeccHHHHHHHHHHHHhC
Q psy12287 27 SVRVTFTIPKEAAVRLRQLAQQG 49 (76)
Q Consensus 27 SVRVTf~IPreAA~rLr~LA~~g 49 (76)
+.++|+++|.+=..-++++.++|
T Consensus 3 ~~~~sIsL~~~l~~~i~~~V~sG 25 (88)
T 3kxe_C 3 SKNTSVVLGDHFQAFIDSQVADG 25 (88)
T ss_dssp --CEEECCCHHHHHHHHHHHTTT
T ss_pred CceeeeecCHHHHHHHHHHHHcC
Confidence 56889999999888888887766
No 41
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=29.08 E-value=1.2e+02 Score=19.76 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=13.8
Q ss_pred ceeEEEEeccHHHHHHHHHH
Q psy12287 26 NSVRVTFTIPKEAAVRLRQL 45 (76)
Q Consensus 26 nSVRVTf~IPreAA~rLr~L 45 (76)
+...|+|++|++-+.+..+.
T Consensus 58 g~~~isftv~~~~~~~a~~~ 77 (181)
T 3s1t_A 58 GKTDITFTCSRDVGPAAVEK 77 (181)
T ss_dssp CEEEEEEEEETTTHHHHHHH
T ss_pred CccEEEEEEehhHHHHHHHH
Confidence 34689999998765554443
No 42
>2kic_A Nitrogenase gamma subunit; N-NAFY, protein binding,metal TRA; NMR {Azotobacter vinelandii}
Probab=26.90 E-value=18 Score=23.89 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=11.9
Q ss_pred EeccHHHHHHHHHHH
Q psy12287 32 FTIPKEAAVRLRQLA 46 (76)
Q Consensus 32 f~IPreAA~rLr~LA 46 (76)
+||+||+|.|+-.-|
T Consensus 7 ~~l~rE~ALRIaLAA 21 (98)
T 2kic_A 7 VNMSRETALRIALAA 21 (98)
T ss_dssp SCSCTHHHHHHTTHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 689999999985433
No 43
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=26.83 E-value=26 Score=21.55 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=16.3
Q ss_pred eeeeeecCCceeEEEEeccHHHH-----HHHHHHHHh
Q psy12287 17 INLRKVEPWNSVRVTFTIPKEAA-----VRLRQLAQQ 48 (76)
Q Consensus 17 l~v~kvEPWnSVRVTf~IPreAA-----~rLr~LA~~ 48 (76)
.++.+ ++ +.+++|++||.+-- .+|+.+|.+
T Consensus 3 v~~e~-~~-~~~~l~v~v~~~~~~~~~~~~~~~~~k~ 37 (112)
T 2d3o_1 3 ELISK-EG-NKVEFKVSVPAAEVNRAYDQVWAGLARD 37 (112)
T ss_dssp ---------CCEEEEECCCGGGTHHHHHHHHHHHHTT
T ss_pred eEEEc-CC-cEEEEEEEECHHHHHHHHHHHHHHHHhh
Confidence 34566 77 78999999998643 355666543
No 44
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=26.71 E-value=32 Score=21.20 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=19.0
Q ss_pred eccHHHHHHHHHHHHhCChhhhh
Q psy12287 33 TIPKEAAVRLRQLAQQGNATLLQ 55 (76)
Q Consensus 33 ~IPreAA~rLr~LA~~g~~~Lr~ 55 (76)
|+|.|.-.+|+..|+.....+.+
T Consensus 8 nvpdev~~~L~~rAa~~G~S~~~ 30 (73)
T 3h87_C 8 DIPDDVLASLDAIAARLGLSRTE 30 (73)
T ss_dssp CCCHHHHHHHHHHHHHHTCCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHH
Confidence 78999999999999887665543
No 45
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=26.50 E-value=66 Score=22.59 Aligned_cols=28 Identities=29% Similarity=0.247 Sum_probs=23.0
Q ss_pred CceeEEEEeccHHHHHHHHHHHHhCChh
Q psy12287 25 WNSVRVTFTIPKEAAVRLRQLAQQGNAT 52 (76)
Q Consensus 25 WnSVRVTf~IPreAA~rLr~LA~~g~~~ 52 (76)
...-++++.+|.+...+|+++|...+-+
T Consensus 301 ~~~~~~~~~l~~~~~~~l~~~a~~~~~T 328 (520)
T 2jgp_A 301 FAGDQCTIGAGKALTEGLHQLAQATGTT 328 (520)
T ss_dssp CBEEEEEEECCHHHHHHHHHHHHHHTCC
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 4567899999999999999999875543
No 46
>2adl_A CCDA; ribbon-helix-helix, DNA binding protein; NMR {Escherichia coli} PDB: 2adn_A 2h3a_A 2h3c_A
Probab=26.47 E-value=18 Score=21.60 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=17.6
Q ss_pred EEEEeccHHHHHHHHHHHHhCChhh
Q psy12287 29 RVTFTIPKEAAVRLRQLAQQGNATL 53 (76)
Q Consensus 29 RVTf~IPreAA~rLr~LA~~g~~~L 53 (76)
.++++||++-.++.+.+--+=++.|
T Consensus 4 ~~nlti~~~L~~~a~~~~iN~S~~l 28 (72)
T 2adl_A 4 RITVTVDSDSYQLLKAYDVNISGLV 28 (72)
T ss_dssp EEEEECSSSTHHHHHHTTCCCHHHH
T ss_pred ceEEeeCHHHHHHHHHcCCCHHHHH
Confidence 6899999998877766544444444
No 47
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=26.23 E-value=40 Score=22.95 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhCChhhhhc
Q psy12287 36 KEAAVRLRQLAQQGNATLLQL 56 (76)
Q Consensus 36 reAA~rLr~LA~~g~~~Lr~L 56 (76)
..+..||-.||++|+|++.+.
T Consensus 85 s~le~rL~~la~sg~p~~q~F 105 (115)
T 2uwj_G 85 AALDRRLAGLGGSSDPALADF 105 (115)
T ss_dssp HHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHH
Confidence 356678989999999998764
No 48
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A
Probab=25.72 E-value=29 Score=22.32 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhCC
Q psy12287 37 EAAVRLRQLAQQGN 50 (76)
Q Consensus 37 eAA~rLr~LA~~g~ 50 (76)
+-|.||+.+||.|-
T Consensus 7 ~~~~~~~~~a~~g~ 20 (205)
T 3q1p_A 7 DWVKQIQSIAQAGL 20 (205)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 67889999999874
No 49
>2bjo_A Organic hydroperoxide resistance protein OHRB; heat shock protein, oxidor; 2.10A {Bacillus subtilis}
Probab=25.62 E-value=91 Score=18.92 Aligned_cols=30 Identities=17% Similarity=0.052 Sum_probs=20.9
Q ss_pred eeEEEEecc---HHHHHHHHHHHHhCChhhhhc
Q psy12287 27 SVRVTFTIP---KEAAVRLRQLAQQGNATLLQL 56 (76)
Q Consensus 27 SVRVTf~IP---reAA~rLr~LA~~g~~~Lr~L 56 (76)
.++++|.+| .|-+++|-++|.+.-|--+.|
T Consensus 93 ~i~~~v~~~~~~~e~~~~l~~~a~~~Cpvs~~l 125 (136)
T 2bjo_A 93 GVTLVVNTKDLDREKAQELVNAAHEFCPYSKAT 125 (136)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHCHHHHHH
T ss_pred EEEEEEEeCCCCHHHHHHHHHHHHHhCcHhHHh
Confidence 566777765 677889999888765544444
No 50
>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}
Probab=25.24 E-value=35 Score=20.71 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=14.5
Q ss_pred EEeccHHHHHHHHHHHHh
Q psy12287 31 TFTIPKEAAVRLRQLAQQ 48 (76)
Q Consensus 31 Tf~IPreAA~rLr~LA~~ 48 (76)
.++|-..||++|++|.+.
T Consensus 8 ~i~iT~~A~~~i~~l~~~ 25 (114)
T 2apn_A 8 PLTFTDAAANKVKSLISE 25 (114)
T ss_dssp SCEECSHHHHHHHHHHHH
T ss_pred cEEECHHHHHHHHHHHHh
Confidence 367788999999988754
No 51
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=25.17 E-value=63 Score=18.01 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=22.3
Q ss_pred hhHHHhhcCCCCcCeeeeeecCCceeEE-----EEeccHHHHHH
Q psy12287 3 YLYKVCFNLGGTEGINLRKVEPWNSVRV-----TFTIPKEAAVR 41 (76)
Q Consensus 3 ~~~~~c~~~~~~~~l~v~kvEPWnSVRV-----Tf~IPreAA~r 41 (76)
||..+=..|+ ..++|-+..|..++.| .+.|.++.|.+
T Consensus 30 rL~~lGi~~G--~~v~v~~~~p~gp~~v~v~g~~iaL~~~~A~~ 71 (77)
T 3e19_A 30 KLVSMGLTPG--ATIQVLESHPMGPIIISVGGVRFAIGKGLAGR 71 (77)
T ss_dssp HHHTTTCSTT--CEEEEEEC--CCCEEEEETTEEEEECHHHHTT
T ss_pred HHHHCCCCCC--CEEEEEEecCCCCEEEEECCEEEEeCHHHhCc
Confidence 3444333443 4678888888876655 56788888865
No 52
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=25.01 E-value=53 Score=24.23 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=23.2
Q ss_pred CeeeeeecCCceeEEEEeccHHHH-----HHHHHHHH
Q psy12287 16 GINLRKVEPWNSVRVTFTIPKEAA-----VRLRQLAQ 47 (76)
Q Consensus 16 ~l~v~kvEPWnSVRVTf~IPreAA-----~rLr~LA~ 47 (76)
..++.+.++ +.+++|++||.+-- .+++.+|.
T Consensus 5 ~v~~e~~~~-~~~~l~v~v~~~~~~~~~~~~~~~~~k 40 (392)
T 1t11_A 5 QVTVETLEG-LQRRLNITVPAANIEDAVAAELRNIAK 40 (392)
T ss_dssp EEEEEECST-TEEEEEEEECHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEcCC-cEEEEEEEEcHHHHHHHHHHHHHHHhc
Confidence 467889999 89999999998753 34555554
No 53
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=24.67 E-value=31 Score=24.72 Aligned_cols=12 Identities=42% Similarity=0.523 Sum_probs=10.4
Q ss_pred CceeEEEEeccH
Q psy12287 25 WNSVRVTFTIPK 36 (76)
Q Consensus 25 WnSVRVTf~IPr 36 (76)
-|||||+|.|-.
T Consensus 67 iNSvRvSi~ikq 78 (168)
T 3dwl_F 67 VNSVRFSIRIKQ 78 (168)
T ss_dssp SSEEEEEEECCC
T ss_pred cceEEEEEEehh
Confidence 599999999875
No 54
>3e8p_A Uncharacterized protein; X-RAY Q8E9M7 SOR246 NESG structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=24.03 E-value=77 Score=19.87 Aligned_cols=34 Identities=21% Similarity=0.113 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHHHhCChhhhhcceeEEEecchh
Q psy12287 34 IPKEAAVRLRQLAQQGNATLLQLGILSVQVEGDE 67 (76)
Q Consensus 34 IPreAA~rLr~LA~~g~~~Lr~LGILSVQ~EGd~ 67 (76)
.|.+.++++++.-...+|-.+.|||-=+.++.+.
T Consensus 15 ~~~~~~~~i~~~~~~~~pf~~~lGi~~~~~~~g~ 48 (164)
T 3e8p_A 15 IQAEVLKRVAEVFDQHVPFHNLLGLDIKRYDIDG 48 (164)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHTCEEEEESSSC
T ss_pred CHHHHHHHHHHHhhcCCcHHHhcCcEEEEEeCCE
Confidence 3678899999999999999999999877777654
No 55
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=23.40 E-value=47 Score=24.47 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=27.4
Q ss_pred EEEEeccHHHHH--HHHHHHHhCChhhhhcceeEEEecchhHHH
Q psy12287 29 RVTFTIPKEAAV--RLRQLAQQGNATLLQLGILSVQVEGDELIL 70 (76)
Q Consensus 29 RVTf~IPreAA~--rLr~LA~~g~~~Lr~LGILSVQ~EGd~~I~ 70 (76)
++.++|.|+..- -+++|...+...|+ +.|.|+++||..+.
T Consensus 23 ~~~l~V~R~~i~~ds~~~l~~~~~~~l~--~~l~V~F~gE~G~D 64 (374)
T 1nd7_A 23 HVKINVSRQTLFEDSFQQIMALKPYDLR--RRLYVIFRGEEGLD 64 (374)
T ss_dssp EEEEEECTTTHHHHHHHHHHTSCGGGGG--SEEEEEETTTCCCC
T ss_pred CeEEEECCCCHHHHHHHHHHhcCHHhcc--ceEEEEECCCCCcC
Confidence 455666676432 35666666666787 78999999987653
No 56
>1qwi_A OSMC, osmotically inducible protein; hydroperoxide resistance, hydroperoxide reductase; 1.80A {Escherichia coli} SCOP: d.227.1.1
Probab=23.34 E-value=1.2e+02 Score=18.73 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=22.1
Q ss_pred eEEEEecc---HHHHHHHHHHHHhCChhhhhcc
Q psy12287 28 VRVTFTIP---KEAAVRLRQLAQQGNATLLQLG 57 (76)
Q Consensus 28 VRVTf~IP---reAA~rLr~LA~~g~~~Lr~LG 57 (76)
+++++++| .|.+++|-++|.+.-|--+.|.
T Consensus 100 l~~~v~~~~~~~e~~~~l~~~a~~~Cpvs~sl~ 132 (143)
T 1qwi_A 100 LKSEVAVPGIDASTFDGIIQKAKAGCPVSQVLK 132 (143)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHSHHHHHBC
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHccCchhHhhC
Confidence 55666655 8888999999988777666663
No 57
>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F
Probab=23.05 E-value=35 Score=24.40 Aligned_cols=12 Identities=42% Similarity=0.634 Sum_probs=10.6
Q ss_pred CceeEEEEeccH
Q psy12287 25 WNSVRVTFTIPK 36 (76)
Q Consensus 25 WnSVRVTf~IPr 36 (76)
-|||||+|.|..
T Consensus 67 iNSvRvSi~ikq 78 (168)
T 1k8k_F 67 INSVRVSIAVKQ 78 (168)
T ss_dssp SSEEEEEEECCC
T ss_pred cceEEEEEEEcc
Confidence 599999999975
No 58
>2fot_C Alpha-II spectrin spectrin; calmodulin, calmodulin binding domain, metal binding, structural protein; 2.45A {Homo sapiens}
Probab=23.04 E-value=5.4 Score=23.22 Aligned_cols=10 Identities=40% Similarity=1.059 Sum_probs=7.5
Q ss_pred eecCCceeEE
Q psy12287 21 KVEPWNSVRV 30 (76)
Q Consensus 21 kvEPWnSVRV 30 (76)
.-.||.|||.
T Consensus 19 saspwks~rl 28 (42)
T 2fot_C 19 SASPWKSARL 28 (42)
T ss_dssp -CCHHHHHHH
T ss_pred ccCcchhhhh
Confidence 3579999985
No 59
>1usp_A Organic hydroperoxide resistance protein; oxidoreductase, 2-Cys peroxidase; 1.9A {Deinococcus radiodurans} SCOP: d.227.1.1 PDB: 1usp_B
Probab=22.42 E-value=1.1e+02 Score=18.54 Aligned_cols=29 Identities=21% Similarity=0.121 Sum_probs=19.3
Q ss_pred eEEEEecc---HHHHHHHHHHHHhCChhhhhc
Q psy12287 28 VRVTFTIP---KEAAVRLRQLAQQGNATLLQL 56 (76)
Q Consensus 28 VRVTf~IP---reAA~rLr~LA~~g~~~Lr~L 56 (76)
+++++.+| .|.+++|-+.|...-|--+.|
T Consensus 96 ~~~~v~~~~~~~e~~~~l~~~a~~~Cpvs~~l 127 (139)
T 1usp_A 96 VELEGHFPGLSREQAEGLMHAAHEVCPYSAAT 127 (139)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHCHHHHHH
T ss_pred EEEEEEECCCCHHHHHHHHHHHHhhCchhHHh
Confidence 44555555 888999999887655544443
No 60
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=22.37 E-value=40 Score=22.96 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhCChhhhhc
Q psy12287 37 EAAVRLRQLAQQGNATLLQL 56 (76)
Q Consensus 37 eAA~rLr~LA~~g~~~Lr~L 56 (76)
.+..||-.||++|+|++.+.
T Consensus 87 ~le~rL~~la~sg~p~~q~F 106 (116)
T 2p58_C 87 ALESRLNRLARSQDPRIQTF 106 (116)
T ss_dssp HHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHH
Confidence 45678889999999998764
No 61
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=21.39 E-value=1.7e+02 Score=22.80 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=19.4
Q ss_pred ceeEEEEeccHHHHHHHHHHHHhCChhh
Q psy12287 26 NSVRVTFTIPKEAAVRLRQLAQQGNATL 53 (76)
Q Consensus 26 nSVRVTf~IPreAA~rLr~LA~~g~~~L 53 (76)
+...|+|++|.+-+.+..++.++-..+|
T Consensus 310 ~~~~Isftv~~~~~~~a~~~l~~~~~el 337 (600)
T 3l76_A 310 NSNDIAFTVVKDLLNTAEAVTSAIAPAL 337 (600)
T ss_dssp TEEEEEEEECGGGHHHHHHHHHHHGGGG
T ss_pred CCceEEEEEeHHHHHHHHHHHHHHHHHh
Confidence 4478999999998777666555433444
No 62
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae}
Probab=21.18 E-value=74 Score=20.31 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHHhCChhhhhcceeEEEecchh
Q psy12287 35 PKEAAVRLRQLAQQGNATLLQLGILSVQVEGDE 67 (76)
Q Consensus 35 PreAA~rLr~LA~~g~~~Lr~LGILSVQ~EGd~ 67 (76)
|.++|++|.+.|.+... --+.-++-|.++|+.
T Consensus 218 ~~~~a~~L~~~a~~~g~-~DniTvivv~~~~~~ 249 (250)
T 2pk0_A 218 LDDKNQDLITLANHRGG-LDNITVALVYVESEA 249 (250)
T ss_dssp HHHHHHHHHHHHHHTTC-CSCEEEEEEEECC--
T ss_pred HHHHHHHHHHHHHHcCC-CCCeEEEEEEeeCCc
Confidence 77888999888865421 245556777777653
Done!