RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12287
         (76 letters)



>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 346

 Score = 25.7 bits (56), Expect = 0.60
 Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 9/48 (18%)

Query: 4   LYKVCFNLGG---TEGINLRKVEPWNSVRVTFTIPKEAAVRLRQLAQQ 48
                F + G    E   + KV P         +    + RLR L Q 
Sbjct: 302 ALHAYFGICGLSLMEESGICKVHP------ALNVSTRTSERLRDLHQS 343


>d2duca1 b.47.1.4 (A:2-301) Coronavirus main proteinase (3Cl-pro,
          putative coronavirus nsp2) {SARS coronavirus [TaxId:
          227859]}
          Length = 300

 Score = 24.0 bits (52), Expect = 2.4
 Identities = 4/22 (18%), Positives = 11/22 (50%)

Query: 54 LQLGILSVQVEGDELILTLHQA 75
          +QL ++   ++   L L +  +
Sbjct: 72 VQLRVIGHSMQNCLLRLKVDTS 93


>d1lvoa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro,
          putative coronavirus nsp2) {Transmissible
          gastroenteritis virus [TaxId: 11149]}
          Length = 299

 Score = 23.6 bits (51), Expect = 2.6
 Identities = 7/22 (31%), Positives = 15/22 (68%)

Query: 54 LQLGILSVQVEGDELILTLHQA 75
          + LG++S + +G  L+L ++Q 
Sbjct: 72 VFLGVVSARYKGVNLVLKVNQV 93


>d1p9sa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro,
          putative coronavirus nsp2) {Human coronavirus 229E
          [TaxId: 11137]}
          Length = 300

 Score = 23.6 bits (51), Expect = 2.9
 Identities = 5/22 (22%), Positives = 10/22 (45%)

Query: 54 LQLGILSVQVEGDELILTLHQA 75
            LG++   + G  L + + Q 
Sbjct: 72 AFLGVVGATMHGVTLKIKVSQT 93


>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit
           {Escherichia coli [TaxId: 562]}
          Length = 817

 Score = 23.7 bits (50), Expect = 3.0
 Identities = 6/26 (23%), Positives = 8/26 (30%)

Query: 22  VEPWNSVRVTFTIPKEAAVRLRQLAQ 47
            +     R    I       LR+L Q
Sbjct: 607 QDAPGEARNDGEILAGIYHHLRELYQ 632


>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 190

 Score = 22.8 bits (48), Expect = 5.1
 Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 17  INLRKVEP--WNSVRVTFTIPKEAAVRLRQLAQQGNATLLQLGILSVQVEGDE 67
           +++  V    +    + FT        +R LA+    +L +  + +  V    
Sbjct: 104 LDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTH 156


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.396 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 264,676
Number of extensions: 9679
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 7
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)