BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12290
(530 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C7X|A Chain A, Hemopexin-Like Domain Of Matrix Metalloproteinase 14
Length = 196
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 110/198 (55%), Gaps = 5/198 (2%)
Query: 232 PDTCDTSYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLTHIDAVY 291
P+ CD ++D +A++R E+FVFK+RW WR+ + V+ GYP+ I QFW LP I+ Y
Sbjct: 1 PNICDGNFDTVAMLRGEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLP---ASINTAY 57
Query: 292 QRIDNHIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNSKTYLFSG 351
+R D FF G ++++F+ L PGYP+ + LG ++IDAA+ W N KTY F G
Sbjct: 58 ERKDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG 117
Query: 352 TRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGA-TYXXXXXXXXXXXDVSM 410
+Y++ ++E + +YP+N+ + W G+ +F D TY + +
Sbjct: 118 NKYYRFNEELRAVDSEYPKNI-KVWEGIPESPRGSFMGSDEVFTYFYKGNKYWKFNNQKL 176
Query: 411 RVEKEKPSPSAQFWMKCP 428
+VE P + + WM CP
Sbjct: 177 KVEPGYPKSALRDWMGCP 194
>pdb|1RTG|A Chain A, C-terminal Domain (haemopexin-like Domain) Of Human Matrix
Metalloproteinase-2
Length = 210
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 6/165 (3%)
Query: 232 PDTC--DTSYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLTHIDA 289
P+ C D +D IA IR E+F FKDR++WR P P+L+ FW ELP IDA
Sbjct: 16 PEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPE---KIDA 72
Query: 290 VYQR-IDNHIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNSKTYL 348
VY+ + FF G +Y+++ L GYP+PLT+LGLP ++R+DAA W N KTY+
Sbjct: 73 VYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYI 132
Query: 349 FSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGA 393
F+G ++W+ ++ + +P +P+ + + W + ++D + G
Sbjct: 133 FAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGG 177
>pdb|1GEN|A Chain A, C-Terminal Domain Of Gelatinase A
Length = 218
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 6/165 (3%)
Query: 232 PDTC--DTSYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLTHIDA 289
P+ C D +D IA IR E+F FKDR++WR P P+L+ FW ELP IDA
Sbjct: 24 PEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEK---IDA 80
Query: 290 VYQR-IDNHIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNSKTYL 348
VY+ + FF G +Y+++ L GYP+PLT+LGLP ++R+DAA W N KTY+
Sbjct: 81 VYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYI 140
Query: 349 FSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGA 393
F+G ++W+ ++ + +P +P+ + + W + ++D + G
Sbjct: 141 FAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGG 185
>pdb|1CK7|A Chain A, Gelatinase A (Full-Length)
pdb|1GXD|A Chain A, Prommp-2TIMP-2 Complex
pdb|1GXD|B Chain B, Prommp-2TIMP-2 Complex
Length = 631
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 6/165 (3%)
Query: 232 PDTC--DTSYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLTHIDA 289
P+ C D +D IA IR E+F FKDR++WR P P+L+ FW ELP IDA
Sbjct: 437 PEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEK---IDA 493
Query: 290 VYQR-IDNHIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNSKTYL 348
VY+ + FF G +Y+++ L GYP+PLT+LGLP ++R+DAA W N KTY+
Sbjct: 494 VYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYI 553
Query: 349 FSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGA 393
F+G ++W+ ++ + +P +P+ + + W + ++D + G
Sbjct: 554 FAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGG 598
>pdb|1PEX|A Chain A, Collagenase-3 (Mmp-13) C-Terminal Hemopexin-Like Domain
Length = 207
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 100/179 (55%), Gaps = 10/179 (5%)
Query: 222 GESNPGPS--DKPDTCD--TSYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFW 277
G+ +P P PD CD S DAI +R E +FKDR+ WR+ + V L FW
Sbjct: 5 GDEDPNPKHPKTPDKCDPSLSLDAITSLRGETMIFKDRFFWRLHPQQV-DAELFLTKSFW 63
Query: 278 SELPHNLTHIDAVYQRIDNHIAF-FIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDA 336
ELP+ IDA Y+ + + F F GR+++ G +L GYP+ ++ LGLP +++I A
Sbjct: 64 PELPN---RIDAAYEHPSHDLIFIFRGRKFWALNGYDILEGYPKKISELGLPKEVKKISA 120
Query: 337 AMVWGYNSKTYLFSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATY 395
A+ + KT LFSG + W+ DD + DYPR + E++ G+G +D ++ K+G Y
Sbjct: 121 AVHFEDTGKTLLFSGNQVWRYDDTNHIMDKDYPRLIEEDFPGIGDKVDAVYE-KNGYIY 178
>pdb|1SU3|A Chain A, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
pdb|1SU3|B Chain B, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
Length = 450
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 17/172 (9%)
Query: 232 PDTCDT--SYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVL----IHQFWSELPHNLT 285
P CD+ ++DAI IR EV FKDR+ R P YP + I FW +LP+ L
Sbjct: 256 PKACDSKLTFDAITTIRGEVMFFKDRFYMRTN-----PFYPEVELNFISVFWPQLPNGL- 309
Query: 286 HIDAVYQRID-NHIAFFIGRQYFLFEGIRLLPGYPRPL-TALGLPASLERIDAAMVWGYN 343
+A Y+ D + + FF G +Y+ +G +L GYP+ + ++ G P +++ IDAA+
Sbjct: 310 --EAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENT 367
Query: 344 SKTYLFSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATY 395
KTY F +YW+ D+ +P YP+ + ++ G+G +D F KDG Y
Sbjct: 368 GKTYFFVANKYWRYDEYKRSMDPGYPKMIAHDFPGIGHKVDAVFM-KDGFFY 418
>pdb|2CLT|A Chain A, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|2CLT|B Chain B, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|4AUO|A Chain A, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
pdb|4AUO|B Chain B, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
Length = 367
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 17/172 (9%)
Query: 232 PDTCDT--SYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVL----IHQFWSELPHNLT 285
P CD+ ++DAI IR EV FKDR+ R P YP + I FW +LP+ L
Sbjct: 176 PKACDSKLTFDAITTIRGEVMFFKDRFYMRTN-----PFYPEVELNFISVFWPQLPNGL- 229
Query: 286 HIDAVYQRID-NHIAFFIGRQYFLFEGIRLLPGYPRPL-TALGLPASLERIDAAMVWGYN 343
+A Y+ D + + FF G +Y+ +G +L GYP+ + ++ G P +++ IDAA+
Sbjct: 230 --EAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENT 287
Query: 344 SKTYLFSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATY 395
KTY F +YW+ D+ +P YP+ + ++ G+G +D F KDG Y
Sbjct: 288 GKTYFFVANKYWRYDEYKRSMDPGYPKMIAHDFPGIGHKVDAVFM-KDGFFY 338
>pdb|2JXY|A Chain A, Solution Structure Of The Hemopexin-Like Domain Of Mmp12
Length = 194
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 14/202 (6%)
Query: 231 KPDTCD--TSYDAIAVIRTEVFVFKDRWMW-RIGDKGVLPGYPV-LIHQFWSELPHNLTH 286
+P CD S+DA+ + ++F FKDR+ W ++ ++ P V LI W LP +
Sbjct: 2 EPALCDPNLSFDAVTTVGNKIFFFKDRFFWLKVSER---PKTSVNLISSLWPTLP---SG 55
Query: 287 IDAVYQ-RIDNHIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNSK 345
I+A Y+ N + F +Y+L +R P YP+ + + G P +++IDAA+ +
Sbjct: 56 IEAAYEIEARNQVFLFKDDKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYR 115
Query: 346 TYLFSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATYXXXXXXXXXX 405
TY F +YW+ D+ +P YP+ +T+N++G+G ID F K+ Y
Sbjct: 116 TYFFVDNQYWRYDERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFFQGSNQFEY 175
Query: 406 XDVSMRVEKEKPSPSAQFWMKC 427
+ R+ K S S W C
Sbjct: 176 DFLLQRITKTLKSNS---WFGC 194
>pdb|3BA0|A Chain A, Crystal Structure Of Full-Length Human Mmp-12
Length = 365
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 102/208 (49%), Gaps = 15/208 (7%)
Query: 226 PGPSD-KPDTCD--TSYDAIAVIRTEVFVFKDRWMW-RIGDKGVLPGYPV-LIHQFWSEL 280
P P + +P CD S+DA+ + ++F FKDR+ W ++ ++ P V LI W L
Sbjct: 167 PNPDNSEPALCDPNLSFDAVTTVGNKIFFFKDRFFWLKVSER---PKTSVNLISSLWPTL 223
Query: 281 PHNLTHIDAVYQ-RIDNHIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMV 339
P + I+A Y+ N + F +Y+L +R P YP+ + + G P +++IDAA+
Sbjct: 224 P---SGIEAAYEIEARNQVFLFKDDKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVF 280
Query: 340 WGYNSKTYLFSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATYXXXX 399
+TY F +YW+ D+ +P YP+ +T+N++G+G ID F K+ Y
Sbjct: 281 NPRFYRTYFFVDNQYWRYDERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFFQG 340
Query: 400 XXXXXXXDVSMRVEKEKPSPSAQFWMKC 427
+ R+ K S S W C
Sbjct: 341 SNQFEYDFLLQRITKTLKSNS---WFGC 365
>pdb|1FBL|A Chain A, Structure Of Full-Length Porcine Synovial Collagenase
(Mmp1) Reveals A C-Terminal Domain Containing A
Calcium-Linked, Four-Bladed Beta- Propeller
Length = 370
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 88/175 (50%), Gaps = 11/175 (6%)
Query: 226 PGPSDKPDTCDT--SYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPV-LIHQFWSELPH 282
P P CD+ ++DAI +R E+ FKDR+ R P + I FW ++P+
Sbjct: 170 PSGPQTPQVCDSKLTFDAITTLRGELMFFKDRFYMRT--NSFYPEVELNFISVFWPQVPN 227
Query: 283 NLTHIDAVYQRID-NHIAFFIGRQYFLFEGIRLLPGYPRPLT-ALGLPASLERIDAAMVW 340
L A Y+ D + + FF G +Y+ G +L GYP+ + + G P++++ IDAA+
Sbjct: 228 GLQ---AAYEIADRDEVRFFKGNKYWAVRGQDVLYGYPKDIHRSFGFPSTVKNIDAAVFE 284
Query: 341 GYNSKTYLFSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATY 395
KTY F W+ D+ + YP+ + E + G+G +D FQ KDG Y
Sbjct: 285 EDTGKTYFFVAHECWRYDEYKQSMDTGYPKMIAEEFPGIGNKVDAVFQ-KDGFLY 338
>pdb|1ITV|A Chain A, Dimeric Form Of The Haemopexin Domain Of Mmp9
pdb|1ITV|B Chain B, Dimeric Form Of The Haemopexin Domain Of Mmp9
Length = 195
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 9/166 (5%)
Query: 233 DTCDTS-YDAIAVIRTEVFVFKDRWMWRIGD-KGVLPGYPVLIHQFWSELPHNLTHIDAV 290
D C+ + +DAIA I ++++FKD WR + +G P P LI W LP L D+V
Sbjct: 2 DACNVNIFDAIAEIGNQLYLFKDGKYWRFSEGRGSRPQGPFLIADKWPALPRKL---DSV 58
Query: 291 YQR-IDNHIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNSKTYLF 349
++ + + FF GRQ +++ G +L PR L LGL A + ++ A+ G K LF
Sbjct: 59 FEEPLSKKLFFFSGRQVWVYTGASVLG--PRRLDKLGLGADVAQVTGALRSG-RGKMLLF 115
Query: 350 SGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATY 395
SG R W+ D + +P + + GV +D D FQ+++ A +
Sbjct: 116 SGRRLWRFDVKAQMVDPRSASEVDRMFPGVPLDTHDVFQFREKAYF 161
>pdb|1QHU|A Chain A, Mammalian Blood Serum Haemopexin Deglycosylated And In
Complex With Its Ligand Haem
pdb|1QJS|A Chain A, Mammalian Blood Serum Haemopexin Glycosylated-Native
Protein And In Complex With Its Ligand Haem
pdb|1QJS|B Chain B, Mammalian Blood Serum Haemopexin Glycosylated-Native
Protein And In Complex With Its Ligand Haem
Length = 460
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 288 DAVYQRIDNHIAFFIGRQYFLFEGIRLLPGYPRPL-TALGLP--ASLERIDAAMVWGYNS 344
D +Y D + F+ + G L+ GYP+ L LG P SLE +DAA V +S
Sbjct: 314 DKLYLIQDTKVYVFLTKG-----GYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSS 368
Query: 345 KTYLFSGTRYWKLDDETG 362
+ ++ +G R W LD ++G
Sbjct: 369 RLHIMAGRRLWWLDLKSG 386
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 332 ERIDAAMVWGYNSKTYLFSGTRYWKLDDETGRSE-PDYPRNMTENWRGVGVDIDDAFQWK 390
+ + +AMV + TY+FSG+ YW+LD T R +P + W +D AF W+
Sbjct: 258 DLVLSAMVSDNHGATYVFSGSHYWRLD--TNRDGWHSWP--IAHQWPQGPSTVDAAFSWE 313
Query: 391 D 391
D
Sbjct: 314 D 314
>pdb|1HXN|A Chain A, 1.8 Angstroms Crystal Structure Of The C-Terminal Domain
Of Rabbit Serum Hemopexin
Length = 219
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 288 DAVYQRIDNHIAFFIGRQYFLFEGIRLLPGYPRPL-TALGLP--ASLERIDAAMVWGYNS 344
D +Y D + F+ + G L+ GYP+ L LG P SLE +DAA V +S
Sbjct: 73 DKLYLIQDTKVYVFLTKG-----GYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSS 127
Query: 345 KTYLFSGTRYWKLDDETG 362
+ ++ +G R W LD ++G
Sbjct: 128 RLHIMAGRRLWWLDLKSG 145
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 332 ERIDAAMVWGYNSKTYLFSGTRYWKLDDETGRSE-PDYPRNMTENWRGVGVDIDDAFQWK 390
+ + +AMV + TY+FSG+ YW+LD T R +P + W +D AF W+
Sbjct: 17 DLVLSAMVSDNHGATYVFSGSHYWRLD--TNRDGWHSWP--IAHQWPQGPSTVDAAFSWE 72
Query: 391 D 391
D
Sbjct: 73 D 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,508,489
Number of Sequences: 62578
Number of extensions: 675954
Number of successful extensions: 1221
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1156
Number of HSP's gapped (non-prelim): 30
length of query: 530
length of database: 14,973,337
effective HSP length: 103
effective length of query: 427
effective length of database: 8,527,803
effective search space: 3641371881
effective search space used: 3641371881
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)