RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12290
(530 letters)
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction,
Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR
of basic residues, hydrolase; 1.70A {Homo sapiens}
Length = 196
Score = 211 bits (539), Expect = 4e-66
Identities = 75/198 (37%), Positives = 117/198 (59%), Gaps = 5/198 (2%)
Query: 232 PDTCDTSYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLTHIDAVY 291
P+ CD ++D +A++R E+FVFK+RW WR+ + V+ GYP+ I QFW LP I+ Y
Sbjct: 1 PNICDGNFDTVAMLRGEMFVFKERWFWRVRNNQVMDGYPMPIGQFWRGLPA---SINTAY 57
Query: 292 QRIDNHIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNSKTYLFSG 351
+R D FF G ++++F+ L PGYP+ + LG ++IDAA+ W N KTY F G
Sbjct: 58 ERKDGKFVFFKGDKHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG 117
Query: 352 TRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGA-TYFFKGKGFWKFKDVSM 410
+Y++ ++E + +YP+N+ W G+ +F D TYF+KG +WKF + +
Sbjct: 118 NKYYRFNEELRAVDSEYPKNIKV-WEGIPESPRGSFMGSDEVFTYFYKGNKYWKFNNQKL 176
Query: 411 RVEKEKPSPSAQFWMKCP 428
+VE P + + WM CP
Sbjct: 177 KVEPGYPKSALRDWMGCP 194
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease,
hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP:
b.66.1.1 PDB: 1rtg_A
Length = 218
Score = 204 bits (520), Expect = 6e-63
Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 15/225 (6%)
Query: 207 PRTTPTTTTPPATRRGESNPGPSDKPDTCD--TSYDAIAVIRTEVFVFKDRWMWRIGDKG 264
T P P+ C +D IA IR E+F FKDR++WR
Sbjct: 5 ASPDIDLGTGPTP------TLGPVTPEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPR 58
Query: 265 VLPGYPVLIHQFWSELPHNLTHIDAVYQRI-DNHIAFFIGRQYFLFEGIRLLPGYPRPLT 323
P P+L+ FW ELP IDAVY+ + FF G +Y+++ L GYP+PLT
Sbjct: 59 DKPMGPLLVATFWPELPE---KIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLT 115
Query: 324 ALGLPASLERIDAAMVWGYNSKTYLFSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDI 383
+LGLP ++R+DAA W N KTY+F+G ++W+ ++ + +P +P+ + + W + ++
Sbjct: 116 SLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNL 175
Query: 384 DDAFQW-KDGATYFFKGKGFWKFKDVSMRVEKEKPSPSAQFWMKC 427
D G +YFFKG + K ++ S++ K W+ C
Sbjct: 176 DAVVDLQGGGHSYFFKGAYYLKLENQSLKS--VKFGSIKSDWLGC 218
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer,
hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Length = 195
Score = 197 bits (501), Expect = 1e-60
Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 10/200 (5%)
Query: 233 DTCDTS-YDAIAVIRTEVFVFKDRWMWRIGD-KGVLPGYPVLIHQFWSELPHNLTHIDAV 290
D C+ + +DAIA I ++++FKD WR + +G P P LI W LP +D+V
Sbjct: 2 DACNVNIFDAIAEIGNQLYLFKDGKYWRFSEGRGSRPQGPFLIADKWPALPR---KLDSV 58
Query: 291 YQRI-DNHIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNSKTYLF 349
++ + FF GRQ +++ G + PR L LGL A + ++ A+ G K LF
Sbjct: 59 FEEPLSKKLFFFSGRQVWVYTGASV--LGPRRLDKLGLGADVAQVTGALRSG-RGKMLLF 115
Query: 350 SGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATYFFKGKGFWKFKDVS 409
SG R W+ D + +P + + GV +D D FQ+++ YF + + +W+ S
Sbjct: 116 SGRRLWRFDVKAQMVDPRSASEVDRMFPGVPLDTHDVFQFREK-AYFCQDRFYWRVSSRS 174
Query: 410 MRVEKEKPSPSAQFWMKCPE 429
+ ++ ++CPE
Sbjct: 175 ELNQVDQVGYVTYDILQCPE 194
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix-
metalloproteinase, metalloprotease; 2.70A {Homo sapiens}
SCOP: b.66.1.1
Length = 207
Score = 194 bits (494), Expect = 2e-59
Identities = 73/211 (34%), Positives = 111/211 (52%), Gaps = 11/211 (5%)
Query: 220 RRGESNPGPSDKPDTCDT--SYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFW 277
+ NP PD CD S DAI +R E +FKDR+ WR+ + V L FW
Sbjct: 5 GDEDPNPKHPKTPDKCDPSLSLDAITSLRGETMIFKDRFFWRLHPQQV-DAELFLTKSFW 63
Query: 278 SELPHNLTHIDAVYQRI-DNHIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDA 336
ELP+ IDA Y+ + I F GR+++ G +L GYP+ ++ LGLP +++I A
Sbjct: 64 PELPN---RIDAAYEHPSHDLIFIFRGRKFWALNGYDILEGYPKKISELGLPKEVKKISA 120
Query: 337 AMVWGYNSKTYLFSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATYF 396
A+ + KT LFSG + W+ DD + DYPR + E++ G+G +D + K+G YF
Sbjct: 121 AVHFEDTGKTLLFSGNQVWRYDDTNHIMDKDYPRLIEEDFPGIGDKVDAVY-EKNGYIYF 179
Query: 397 FKGKGFWKFKDVSMRVEKEKPSPSAQFWMKC 427
F G +++ S R+ + P+ S + C
Sbjct: 180 FNGPIQFEYSIWSNRIVRVMPANS---ILWC 207
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length,
metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2
b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB:
1gxd_A
Length = 631
Score = 197 bits (500), Expect = 8e-56
Identities = 72/238 (30%), Positives = 118/238 (49%), Gaps = 7/238 (2%)
Query: 192 PRKPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKPDTCDTSYDAIAVIRTEVFV 251
+ DI + + T + + + D +D IA IR E+F
Sbjct: 399 TKNFRLSQDDIKGIQELYGASPDIDLGTGPTPTLGPVTPEICKQDIVFDGIAQIRGEIFF 458
Query: 252 FKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLTHIDAVYQRI-DNHIAFFIGRQYFLFE 310
FKDR++WR P P+L+ FW ELP IDAVY+ + FF G +Y+++
Sbjct: 459 FKDRFIWRTVTPRDKPMGPLLVATFWPELP---EKIDAVYEAPQEEKAVFFAGNEYWIYS 515
Query: 311 GIRLLPGYPRPLTALGLPASLERIDAAMVWGYNSKTYLFSGTRYWKLDDETGRSEPDYPR 370
L GYP+PLT+LGLP ++R+DAA W N KTY+F+G ++W+ ++ + +P +P+
Sbjct: 516 ASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGDKFWRYNEVKKKMDPGFPK 575
Query: 371 NMTENWRGVGVDIDDAFQW-KDGATYFFKGKGFWKFKDVSMRVEKEKPSPSAQFWMKC 427
+ + W + ++D G +YFFKG + K ++ S++ K W+ C
Sbjct: 576 LIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYLKLENQSLKS--VKFGSIKSDWLGC 631
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain,
catalytic domain, domain interaction., calcium,
extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Length = 365
Score = 172 bits (436), Expect = 5e-49
Identities = 63/249 (25%), Positives = 105/249 (42%), Gaps = 8/249 (3%)
Query: 180 SPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKPDTCDTSY 239
S FP + A P +R + + S+
Sbjct: 124 SSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGDPKENQRLPNPDNSEPALCDPNLSF 183
Query: 240 DAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLTHIDAVYQRIDN-HI 298
DA+ + ++F FKDR+ W + LI W LP I+A Y+ +
Sbjct: 184 DAVTTVGNKIFFFKDRFFWLKVSERP-KTSVNLISSLWPTLPS---GIEAAYEIEARNQV 239
Query: 299 AFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNSKTYLFSGTRYWKLD 358
F +Y+L +R P YP+ + + G P +++IDAA+ +TY F +YW+ D
Sbjct: 240 FLFKDDKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVDNQYWRYD 299
Query: 359 DETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATYFFKGKGFWKFKDVSMRVEKEKPS 418
+ +P YP+ +T+N++G+G ID F K+ YFF+G +++ + R+ K S
Sbjct: 300 ERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFFQGSNQFEYDFLLQRITKTLKS 359
Query: 419 PSAQFWMKC 427
S W C
Sbjct: 360 NS---WFGC 365
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite,
structural proteomics in europe, spine, structural
genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens}
SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Length = 450
Score = 171 bits (434), Expect = 5e-48
Identities = 68/270 (25%), Positives = 109/270 (40%), Gaps = 13/270 (4%)
Query: 164 RQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIAR--AEPRTTPTTTTPPATRR 221
R+ N + HE H P + + + +
Sbjct: 189 REYNLHRVAAHELGHSLGLSHSTD-IGALMYPSYTFSGDVQLAQDDIDGIQAIYGRSQNP 247
Query: 222 GESNPGPSDKPDTCDTSYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELP 281
+ + K ++DAI IR EV FKDR+ R I FW P
Sbjct: 248 VQPIGPQTPKACDSKLTFDAITTIRGEVMFFKDRFYMRTNPFYPEV-ELNFISVFW---P 303
Query: 282 HNLTHIDAVYQRIDN-HIAFFIGRQYFLFEGIRLLPGYPRPL-TALGLPASLERIDAAMV 339
++A Y+ D + FF G +Y+ +G +L GYP+ + ++ G P +++ IDAA+
Sbjct: 304 QLPNGLEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALS 363
Query: 340 WGYNSKTYLFSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATYFFKG 399
KTY F +YW+ D+ +P YP+ + ++ G+G +D F KDG YFF G
Sbjct: 364 EENTGKTYFFVANKYWRYDEYKRSMDPGYPKMIAHDFPGIGHKVDAVF-MKDGFFYFFHG 422
Query: 400 KGFWKFKDVSMRVEKEKPSPSAQFWMKCPE 429
+KF + R+ A W C +
Sbjct: 423 TRQYKFDPKTKRIL---TLQKANSWFNCRK 449
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus
cuniculus} SCOP: b.66.1.1
Length = 219
Score = 157 bits (397), Expect = 4e-45
Identities = 45/225 (20%), Positives = 78/225 (34%), Gaps = 33/225 (14%)
Query: 225 NPGPSDKPDTCD--TSYDAI-AVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELP 281
+ + CD A+ + +VF WR+ + I W + P
Sbjct: 4 STQHGHESTRCDPDLVLSAMVSDNHGATYVFSGSHYWRLDTNRD-GWHSWPIAHQWPQGP 62
Query: 282 HNLTHIDAVYQRIDNHIAFFIGRQYFLF---EGIRLLPGYPRPL-TALGLP--ASLERID 335
+ +DA + ++ + + ++F G L+ GYP+ L LG P SLE +D
Sbjct: 63 ---STVDAAFSW-EDKLYLIQDTKVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVD 118
Query: 336 AAMVWGYNSKTYLFSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQ------- 388
AA V +S+ ++ +G R W LD ++G + +D A
Sbjct: 119 AAFVCPGSSRLHIMAGRRLWWLDLKSG------AQATWTELPWPHEKVDGALCMEKPLGP 172
Query: 389 ----WKDGATYFFKGKGFWKFKDVSMRV-EKEKPSP-SAQFWMKC 427
Y G + ++ V K P P + C
Sbjct: 173 NSCSTSGPNLYLIHGPNLYCYRHVDKLNAAKNLPQPQRVSRLLGC 217
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport,
iron metabolism, binding protein; HET: HEM; 2.30A
{Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB:
1qjs_A*
Length = 460
Score = 153 bits (388), Expect = 3e-41
Identities = 50/249 (20%), Positives = 84/249 (33%), Gaps = 26/249 (10%)
Query: 203 ARAEPRTTPTTTTPPATRRGESNPGPSDKPDTCDT--SYDAIAV-IRTEVFVFKDRWMWR 259
A + + P D + C S+DA + + FKD ++W+
Sbjct: 21 ATVNSVPLTSAHGNVTEGESGTKPEA-DVIEQCSDGWSFDATTLDDNGTMLFFKDEFVWK 79
Query: 260 IGDKGVLPGYPVLIHQFWSELPHNLTHIDAVYQRIDNHIAFFIGRQYFLFEGIRLLPGYP 319
G LI + W +DA ++ + G + +++ + YP
Sbjct: 80 SH-----RGIRELISERWKNFIG---PVDAAFRHGHTSVYLIKGDKVWVYTSEKNEKVYP 131
Query: 320 RPLTALGLPASLERIDAAMVWGY----NSKTYLFSGTRYWKLDDETGRSEPDYPRNMTEN 375
+ L P +DAA+ + F G R W D TG + +
Sbjct: 132 KSLQD-EFPGIPFPLDAAVECHRGECQDEGILFFQGNRKWFWDLTTGTKKE-------RS 183
Query: 376 WRGVGVDIDDAFQWKDGATYFFKGKGFWKFKDVSMRVEKEKPSPSAQFWMKCPEISSPED 435
W VG + A +W G Y F+G F +F VS V P +++ CP
Sbjct: 184 WPAVG-NCTSALRW-LGRYYCFQGNQFLRFNPVSGEVPPGYPLDVRDYFLSCPGRGHRSS 241
Query: 436 RISERRVGR 444
+ + G
Sbjct: 242 HRNSTQHGH 250
Score = 142 bits (358), Expect = 3e-37
Identities = 52/259 (20%), Positives = 88/259 (33%), Gaps = 30/259 (11%)
Query: 188 FPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKPDTCDTSYDAIAVIRT 247
F + P YP R + P + R + S + D ++
Sbjct: 211 FNPVSGEVPPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHG 270
Query: 248 EVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLTHIDAVYQRIDNHIAFFIGRQYF 307
+VF WR+ D + I W + P + +DA + ++ + + +
Sbjct: 271 ATYVFSGSHYWRL-DTNRDGWHSWPIAHQWPQGP---STVDAAFSW-EDKLYLIQDTKVY 325
Query: 308 LF---EGIRLLPGYPRPL-TALGLP--ASLERIDAAMVWGYNSKTYLFSGTRYWKLDDET 361
+F G L+ GYP+ L LG P SLE +DAA V +S+ ++ +G R W LD ++
Sbjct: 326 VFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGRRLWWLDLKS 385
Query: 362 GRSEPDYPRNMTENWRGVGVDIDDAF-----------QWKDGATYFFKGKGFWKFKDVSM 410
G + +D A Y G + ++ V
Sbjct: 386 G------AQATWTELPWPHEKVDGALCMEKPLGPNSCSTSGPNLYLIHGPNLYCYRHVDK 439
Query: 411 RV-EKEKPSP-SAQFWMKC 427
K P P + C
Sbjct: 440 LNAAKNLPQPQRVSRLLGC 458
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna
unguiculata}
Length = 225
Score = 145 bits (366), Expect = 1e-40
Identities = 34/211 (16%), Positives = 58/211 (27%), Gaps = 27/211 (12%)
Query: 246 RTEVFVFKDRWMWRI-----GDKGVLPGYPVLIHQFWSELPHNL---THIDAVYQRIDNH 297
EV+ F R+ + LI + L ID + +
Sbjct: 13 EYEVYFFAKNKYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASE 72
Query: 298 IAFFIGRQYFLFEGIRLLP-----GYPRPLT----ALGLPASLERIDAAMVWGYNSKTYL 348
F G + P + L + ID+A + YL
Sbjct: 73 AYVFSGNHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYL 132
Query: 349 FSGTRYWKLDDETGRSEPDYPRNMTENWR-----GVGVDIDDAFQW-KDGATYFFKGKGF 402
F G +Y ++ ++ + RN+ + + ID F K+ Y FKG+ +
Sbjct: 133 FKGNKYVRIAYDSKQLVG-NIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQNY 191
Query: 403 WKFKDVSMRVEKEK---PSPSAQFWMKCPEI 430
+ P W I
Sbjct: 192 VRIDFTPGGKADTLVGNIRPILDGWPVLKGI 222
Score = 98.9 bits (246), Expect = 8e-24
Identities = 30/168 (17%), Positives = 50/168 (29%), Gaps = 21/168 (12%)
Query: 232 PDTCDTSYDAIAVI---RTEVFVFKDRWMWRI-----GDKGVLPGYPVLIHQFWSELPHN 283
T +E +VF I + P I + + L +
Sbjct: 53 AGTPFAEPGIDCSFHTEASEAYVFSGNHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNT 112
Query: 284 L--THIDAVYQRIDN-HIAFFIGRQYFLF-EGIRLLPGYPRPLTALGLPASL-----ERI 334
+ ID+ ++ + F G +Y + L G R + G P I
Sbjct: 113 VFEDSIDSAFRSTKGKEVYLFKGNKYVRIAYDSKQLVGNIRNIGD-GFPVLNGTEFESGI 171
Query: 335 DAAMVWGYNSKTYLFSGTRYWKLDDETGRSEP---DYPRNMTENWRGV 379
DA + YLF G Y ++D G R + + W +
Sbjct: 172 DACFASHKEPEAYLFKGQNYVRIDFTPGGKADTLVGNIRPILDGWPVL 219
Score = 82.4 bits (203), Expect = 5e-18
Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 21/158 (13%)
Query: 286 HIDAVY-QRIDNHIAFFIGRQYFLFEGI-----RLLPGYPRPLTAL--GLPASLE---RI 334
+I+A + + + FF +Y + R +++ L + I
Sbjct: 3 YINAAFRSSSEYEVYFFAKNKYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGI 62
Query: 335 DAAMVWGYNSKTYLFSGTRYWKLDDETGRSE---PDYPRNMTENWRGVG-----VDIDDA 386
D + S+ Y+FSG +D G + P + E + + ID A
Sbjct: 63 DCS-FHTEASEAYVFSGNHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSA 121
Query: 387 FQW-KDGATYFFKGKGFWKFKDVSMRVEKEKPSPSAQF 423
F+ K Y FKG + + S ++ + F
Sbjct: 122 FRSTKGKEVYLFKGNKYVRIAYDSKQLVGNIRNIGDGF 159
Score = 70.8 bits (173), Expect = 5e-14
Identities = 18/115 (15%), Positives = 34/115 (29%), Gaps = 12/115 (10%)
Query: 333 RIDAAMVWGYNSKTYLFSGTRYWKLDDETGRSE---PDYPRNMTENWRGV------GVDI 383
I+AA + Y F+ +Y +L G S R ++ + + I
Sbjct: 3 YINAAFRSSSEYEVYFFAKNKYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGI 62
Query: 384 DDAFQWKDGATYFFKGKGFWKFKDVSMRVEKEK---PSPSAQFWMKCPEISSPED 435
D +F + Y F G + P+ A+ + +
Sbjct: 63 DCSFHTEASEAYVFSGNHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDS 117
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus
sativus} PDB: 3s0l_A 3v6n_A 3s18_A
Length = 227
Score = 139 bits (350), Expect = 3e-38
Identities = 32/225 (14%), Positives = 65/225 (28%), Gaps = 27/225 (12%)
Query: 231 KPDTCDTSYDAIAVIRTEVFVFKDRWMWRI-----GDKGVLPGYPVLIHQFWSELPHNL- 284
KP + ++ + E + F + + + + P + + L +
Sbjct: 2 KPGYINAAFRS--SKNNEAYFFINDKYVLLDYAPGSSRDKVLYGPTPVRDGFKSLNQTIF 59
Query: 285 --THIDAVYQRIDNHIAFFIGRQYFLFEGIR-----LLPGYPRPLT----ALGLPASLER 333
ID + +N F L + + P+ +
Sbjct: 60 GSYGIDCSFDTENNEAFIFYENFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESG 119
Query: 334 IDAAMVWGYNSKTYLFSGTRYWKLDDETGRSEPDYPRNMTENWR-----GVGVDIDDAFQ 388
IDAA + YLF G +Y ++D + ++++ + D AF
Sbjct: 120 IDAAYRSTRGKEVYLFKGDQYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFA 179
Query: 389 WKD-GATYFFKGKGFWKFK--DVSMRVEKEKPSPSAQFWMKCPEI 430
YFFK + + K + +W +I
Sbjct: 180 SHKTNEVYFFKDDHYARVKVTPXXKLXIMDGVREIVDYWPSLKDI 224
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 41.1 bits (95), Expect = 0.001
Identities = 19/112 (16%), Positives = 28/112 (25%), Gaps = 2/112 (1%)
Query: 125 HHHPEHHPTPESP--RREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPRRDSPP 182
HHH HH E+ + E N T S E S + ++ E H
Sbjct: 5 HHHHGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEK 64
Query: 183 RHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKPDT 234
P + + A+ P KP +
Sbjct: 65 AEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKS 116
Score = 40.3 bits (93), Expect = 0.002
Identities = 15/121 (12%), Positives = 27/121 (22%), Gaps = 10/121 (8%)
Query: 122 HPTHHH--------PEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETP 173
H HHH E PE+ T + + E +
Sbjct: 7 HHGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGE--HARENKLEK 64
Query: 174 HEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKPD 233
E + E A A+ E + + P+ + ++
Sbjct: 65 AEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKP 124
Query: 234 T 234
Sbjct: 125 E 125
Score = 36.1 bits (82), Expect = 0.030
Identities = 23/167 (13%), Positives = 44/167 (26%), Gaps = 7/167 (4%)
Query: 71 KKEDRIGESQPFRERTLSICDRKEEKSWAVIPRYSPSPDLTTRRPEVPRPRHPTHHHPEH 130
+ D+ E + RE L + S P + + T E P E
Sbjct: 46 NEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTET--AEAASAAKPEEKASE- 102
Query: 131 HPTPESPRREPPPRHPNQ---YPETPQDSPRREPSLRQPNQYPETPHEPRRDSPPRHPNQ 187
E+P E P+ + PE +P+ E + +++ +
Sbjct: 103 -VVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPK 161
Query: 188 FPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKPDT 234
+ + E + A+RR +
Sbjct: 162 EIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKASKEA 208
Score = 29.9 bits (66), Expect = 2.7
Identities = 17/130 (13%), Positives = 33/130 (25%), Gaps = 3/130 (2%)
Query: 106 PSPDLTTRRPEVPRPRHPTHHHPEH-HPTPESPRREPPPRHPNQYPETPQDSPRREPSLR 164
S T + H + E + P + ET + + +P +
Sbjct: 40 ESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEK 99
Query: 165 QPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGES 224
ETP + + PE + P A +T ++
Sbjct: 100 ASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKP--AAEANKTEKEVQPDVPKNTEKT 157
Query: 225 NPGPSDKPDT 234
K ++
Sbjct: 158 LKPKEIKFNS 167
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 39.3 bits (91), Expect = 0.001
Identities = 20/118 (16%), Positives = 31/118 (26%)
Query: 115 PEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPH 174
E+P P P E P+ PP P PE + P P
Sbjct: 26 IELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK 85
Query: 175 EPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKP 232
+ P + + P+ KP P T++ + + P
Sbjct: 86 PKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGP 143
Score = 33.9 bits (77), Expect = 0.080
Identities = 20/118 (16%), Positives = 31/118 (26%), Gaps = 2/118 (1%)
Query: 126 HHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPRRDSPPRHP 185
HH HH + PR H Q E P + ++ P P P
Sbjct: 4 HHHHHHSSGLVPRGSHMSVH--QVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEP 61
Query: 186 NQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKPDTCDTSYDAIA 243
PE +PP P + P + + + ++ A
Sbjct: 62 EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTA 119
Score = 32.4 bits (73), Expect = 0.26
Identities = 17/116 (14%), Positives = 24/116 (20%), Gaps = 5/116 (4%)
Query: 122 HPTHHHP-----EHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEP 176
H HHH E P + P QP P EP
Sbjct: 4 HHHHHHSSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEP 63
Query: 177 RRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKP 232
+ P P + P KP + + + +
Sbjct: 64 EPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTA 119
Score = 31.2 bits (70), Expect = 0.62
Identities = 15/104 (14%), Positives = 25/104 (24%), Gaps = 4/104 (3%)
Query: 106 PSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQ 165
PE P P+ + P + + P+ P+
Sbjct: 56 EPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPF 115
Query: 166 PNQYPETPHEPRRDSPPRHP----NQFPETPRKPPARYPDIARA 205
N P + P P + +YP A+A
Sbjct: 116 ENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQA 159
Score = 30.8 bits (69), Expect = 0.90
Identities = 19/120 (15%), Positives = 30/120 (25%), Gaps = 4/120 (3%)
Query: 108 PDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPN 167
DL + P P PE P PE P+ P + P+ P ++ +
Sbjct: 43 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 102
Query: 168 QYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPP----ATRRGE 223
P P + + P + A + P A
Sbjct: 103 DVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRI 162
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 37.8 bits (87), Expect = 0.007
Identities = 23/145 (15%), Positives = 30/145 (20%), Gaps = 12/145 (8%)
Query: 123 PTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPRRDSPP 182
HHH P P + P + P+ P P P +PP
Sbjct: 5 HHHHHHSSGLVPRGSHMVIPS--ASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 183 RH------PNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKPDTCD 236
+ P P A R A G +
Sbjct: 63 DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPA----AGRAVPGLYHH 118
Query: 237 TSYDAIAVIRTEVFVFKDRWMWRIG 261
+ V EV RW
Sbjct: 119 PVPEPDPVRVEEVSRRIKRWAEDEV 143
Score = 32.8 bits (74), Expect = 0.28
Identities = 14/99 (14%), Positives = 21/99 (21%), Gaps = 8/99 (8%)
Query: 136 SPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPRRDSPPRHPNQFPETPRKP 195
S P S+ P P P+ P P P
Sbjct: 4 SHHHHHHSSGLV--PRGSHMVIPS-ASVTSAASDFLAALHP----PVTVPDPAPPPPPAP 56
Query: 196 PARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKPDT 234
A P + T G ++ P+ +
Sbjct: 57 AAGNPPDTVTGD-SVLQRILRGPTGPGTTSLAPAVRYGR 94
Score = 31.7 bits (71), Expect = 0.68
Identities = 14/110 (12%), Positives = 24/110 (21%)
Query: 102 PRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREP 161
PS +T+ + HP P+ P P P Q R
Sbjct: 20 HMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPT 79
Query: 162 SLRQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTP 211
+ P + + P + + +P
Sbjct: 80 GPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVE 129
Score = 29.0 bits (64), Expect = 4.3
Identities = 20/113 (17%), Positives = 26/113 (23%), Gaps = 11/113 (9%)
Query: 102 PRYSPSP-DLTTRRPEVPRPRH-----PTHHHPEHHPTPESPRREPPPRHPNQYPETPQD 155
+ L R + P + HP P PPP +
Sbjct: 5 HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPP----PPAPAAGN 60
Query: 156 SPRREPSLRQPNQYPETPHEPRRDSP-PRHPNQFPETPRKPPARYPDIARAEP 207
P + P P S P P P + P RA P
Sbjct: 61 PPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVP 113
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 38.1 bits (88), Expect = 0.009
Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 13/117 (11%)
Query: 102 PRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQD---SPR 158
P YSP+ + P P++ +P SP P P+ P +P SP
Sbjct: 1646 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPS 1703
Query: 159 REPSLRQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTT 215
P+ P+ P +P P P+ P +P P P + P +PT+ +
Sbjct: 1704 YSPT--SPSYSPTSP-----SYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPS 1752
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 37.1 bits (85), Expect = 0.016
Identities = 18/131 (13%), Positives = 34/131 (25%), Gaps = 4/131 (3%)
Query: 102 PRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREP 161
+Y + + + P+ P + P+ P Q+ Q+ ++
Sbjct: 14 LQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQI 73
Query: 162 SLRQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRR 221
+ H P PN + + P + +P P P A
Sbjct: 74 DQATTSMNDMHLHNV----PLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129
Query: 222 GESNPGPSDKP 232
P P
Sbjct: 130 QNMRPMNQLYP 140
Score = 34.8 bits (79), Expect = 0.078
Identities = 22/136 (16%), Positives = 34/136 (25%), Gaps = 3/136 (2%)
Query: 102 PRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRR---EPPPRHPNQYPETPQDSPR 158
P P+ + + P + P P ++ P +Q + S
Sbjct: 22 PLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMN 81
Query: 159 REPSLRQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPA 218
P P +P+ P Q + P PA A P P
Sbjct: 82 DMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPI 141
Query: 219 TRRGESNPGPSDKPDT 234
E P +D
Sbjct: 142 DLLTELPPPITDLTLP 157
Score = 33.6 bits (76), Expect = 0.18
Identities = 12/124 (9%), Positives = 23/124 (18%), Gaps = 1/124 (0%)
Query: 118 PRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPR 177
P E ++ + + P +P+ Q P P
Sbjct: 50 QGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPL 109
Query: 178 RDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKPDTCDT 237
+ P + + T P + P P
Sbjct: 110 QQQQQPMAAPAYGQPSAAMGQNMR-PMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERM 168
Query: 238 SYDA 241
+
Sbjct: 169 LVPS 172
Score = 33.6 bits (76), Expect = 0.18
Identities = 22/130 (16%), Positives = 31/130 (23%), Gaps = 5/130 (3%)
Query: 102 PRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRR-EPPPRHPNQYPETPQDSPRRE 160
P P + ++ P + + P PN Y P +
Sbjct: 48 PPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYM--QPQVPVQM 105
Query: 161 PSLRQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATR 220
+ Q Q P P P Q + P T T PP
Sbjct: 106 GTPLQQQQQPMAA--PAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVI 163
Query: 221 RGESNPGPSD 230
E PS+
Sbjct: 164 PPERMLVPSE 173
Score = 33.6 bits (76), Expect = 0.20
Identities = 14/106 (13%), Positives = 23/106 (21%), Gaps = 5/106 (4%)
Query: 124 THHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPRRDSPPR 183
+HH +P + + P P Y + P+ P
Sbjct: 2 SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDP-----AAAGMSYGQMGMPPQGAVPSM 56
Query: 184 HPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPS 229
QF ++ + D A P P
Sbjct: 57 GQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVP 102
Score = 29.8 bits (66), Expect = 2.9
Identities = 8/97 (8%), Positives = 24/97 (24%)
Query: 136 SPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPRRDSPPRHPNQFPETPRKP 195
++ P+ QY + + + + + PP+ +
Sbjct: 3 HHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFL 62
Query: 196 PARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKP 232
+ + + T + +P +P
Sbjct: 63 TPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQP 99
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 37.0 bits (85), Expect = 0.018
Identities = 30/131 (22%), Positives = 44/131 (33%), Gaps = 7/131 (5%)
Query: 102 PRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREP 161
P YSP+ + P P++ +P SP P P+ P +P SP
Sbjct: 1575 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPS 1632
Query: 162 SLRQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRR 221
Y T P P+ P +P P P + P +PT+ + T
Sbjct: 1633 YSPTSPSYSPTSP----SYSPTSPSYSPTSPAYSPTS-PSYSPTSPSYSPTSPSYSPTSP 1687
Query: 222 GESNPGPSDKP 232
S P+ P
Sbjct: 1688 SYSPTSPNYSP 1698
Score = 36.6 bits (84), Expect = 0.021
Identities = 28/123 (22%), Positives = 40/123 (32%), Gaps = 17/123 (13%)
Query: 102 PRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREP-----PPRHPNQYPETPQDS 156
P YSP+ + P P++ +P SP P P P+ P +P S
Sbjct: 1617 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYS 1676
Query: 157 PRREPSLRQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTP 216
P P+ P +P P PN P +P P P + P +P
Sbjct: 1677 P------TSPSYSPTSPSY-----SPTSPNYSPTSPSYSPTS-PGYSPGSPAYSPKQDEQ 1724
Query: 217 PAT 219
Sbjct: 1725 KHN 1727
Score = 30.1 bits (67), Expect = 2.6
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 102 PRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPP-----PRHPNQYPETPQDS 156
P YSP+ + P P++ +P SP P P P P +P S
Sbjct: 1659 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYS 1718
Query: 157 PRREPSLRQPNQYPE 171
P+++ N+
Sbjct: 1719 PKQDEQKHNENENSR 1733
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 35.8 bits (81), Expect = 0.018
Identities = 21/133 (15%), Positives = 30/133 (22%)
Query: 102 PRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREP 161
P +P + + P PPP+H +
Sbjct: 4 PAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFE 63
Query: 162 SLRQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRR 221
P TP +P S Q ++P A + T PAT
Sbjct: 64 DTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVN 123
Query: 222 GESNPGPSDKPDT 234
G G
Sbjct: 124 GTVEGGSGAGRLD 136
Score = 34.3 bits (77), Expect = 0.063
Identities = 19/142 (13%), Positives = 34/142 (23%)
Query: 105 SPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLR 164
SP+ R P P +P R+ PP P ++ + + + SL
Sbjct: 3 SPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLF 62
Query: 165 QPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGES 224
+ PE P + A +E ++ T
Sbjct: 63 EDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATV 122
Query: 225 NPGPSDKPDTCDTSYDAIAVIR 246
N + +
Sbjct: 123 NGTVEGGSGAGRLDLPPGFMFK 144
Score = 30.8 bits (68), Expect = 0.90
Identities = 11/120 (9%), Positives = 19/120 (15%)
Query: 97 SWAVIPRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDS 156
+ SPS P P+ + P + + S
Sbjct: 23 TPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEAS 82
Query: 157 PRREPSLRQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTP 216
+ + P ET + R
Sbjct: 83 EVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFM 142
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding
protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A
1jh4_A
Length = 144
Score = 34.8 bits (79), Expect = 0.024
Identities = 14/89 (15%), Positives = 23/89 (25%), Gaps = 6/89 (6%)
Query: 132 PTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPRRDSPPRHPNQFPET 191
P + P R QY ++ QP + P + P +
Sbjct: 2 PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASA 61
Query: 192 PRKPPAR------YPDIARAEPRTTPTTT 214
P + + +P I P T
Sbjct: 62 PPQEQKQMLGERLFPLIQAMHPTLAGKIT 90
>3vf0_A Vinculin, metavinculin; cytoskeletal F-actin binding protein, CEL
adhesion-protein binding complex; HET: EPE; 2.54A {Homo
sapiens}
Length = 283
Score = 35.8 bits (81), Expect = 0.027
Identities = 23/111 (20%), Positives = 29/111 (26%), Gaps = 10/111 (9%)
Query: 128 PEHHPTPE----SPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPRRD--SP 181
P P PE PR PP ++PE +P + Q H+ R S
Sbjct: 9 PPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQPMMMAARQ----LHDEARKWSSK 64
Query: 182 PRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKP 232
P P A D A P SN +
Sbjct: 65 PGIPAAEVGIGVVAEADAADAAGFPVPPDMEDDYEPELLLMPSNQPVNQPI 115
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 35.4 bits (81), Expect = 0.029
Identities = 15/91 (16%), Positives = 22/91 (24%)
Query: 132 PTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPRRDSPPRHPNQFPET 191
T R P P P PRR Q Q + +
Sbjct: 7 QTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKP 66
Query: 192 PRKPPARYPDIARAEPRTTPTTTTPPATRRG 222
+ PP + + + T + P R
Sbjct: 67 KKTPPPKPKKTQKPKKPTQKKKSKPGKRMRN 97
Score = 35.0 bits (80), Expect = 0.041
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 3/107 (2%)
Query: 104 YSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSL 163
+ P+ RR RP + P+ P RR P + + + +
Sbjct: 3 FIPTQTFYGRRW---RPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQ 59
Query: 164 RQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTT 210
++ + P+ P+ + + KP R + + E
Sbjct: 60 KRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIENDCI 106
Score = 30.0 bits (67), Expect = 1.9
Identities = 10/85 (11%), Positives = 22/85 (25%), Gaps = 5/85 (5%)
Query: 102 PRYSPSPDLTTRRPEVPRP-----RHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDS 156
P P RR P + + +++P P + +T +
Sbjct: 22 YIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPKKTQKPK 81
Query: 157 PRREPSLRQPNQYPETPHEPRRDSP 181
+ +P + + D
Sbjct: 82 KPTQKKKSKPGKRMRNCMKIENDCI 106
Score = 28.1 bits (62), Expect = 6.6
Identities = 10/70 (14%), Positives = 18/70 (25%)
Query: 165 QPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGES 224
Q P + P+ P R+ P++ + A + +
Sbjct: 7 QTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKP 66
Query: 225 NPGPSDKPDT 234
P KP
Sbjct: 67 KKTPPPKPKK 76
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 35.7 bits (82), Expect = 0.030
Identities = 20/157 (12%), Positives = 37/157 (23%), Gaps = 19/157 (12%)
Query: 105 SPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPP---RHPNQYPETPQDSPRREP 161
+ S + ++ + H P + PP R P P
Sbjct: 6 AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPH-G 64
Query: 162 SLRQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYP--------------DIARAEP 207
SL+ Y P + P PE+ ++ + EP
Sbjct: 65 SLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEP 124
Query: 208 RTTPTTT-TPPATRRGESNPGPSDKPDTCDTSYDAIA 243
++ ++N +K T
Sbjct: 125 DEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMAD 161
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 34.0 bits (77), Expect = 0.100
Identities = 11/106 (10%), Positives = 23/106 (21%), Gaps = 4/106 (3%)
Query: 108 PDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPN--QYPETPQDSPRREPSLRQ 165
P PR R P + + + + + + R +
Sbjct: 13 PFPAPTAMWRPRRRRQA--APMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPR 70
Query: 166 PNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTP 211
+ + P+ + KP R + E
Sbjct: 71 QKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLF 116
Score = 33.6 bits (76), Expect = 0.12
Identities = 12/94 (12%), Positives = 23/94 (24%), Gaps = 8/94 (8%)
Query: 132 PTPESPRREPPPRHPNQYPETPQDSPRRE--------PSLRQPNQYPETPHEPRRDSPPR 183
P P + R R P + + + + Q + P +
Sbjct: 15 PAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQ 74
Query: 184 HPNQFPETPRKPPARYPDIARAEPRTTPTTTTPP 217
P Q P+ + P A+ +
Sbjct: 75 APKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMAL 108
Score = 32.9 bits (74), Expect = 0.20
Identities = 16/114 (14%), Positives = 32/114 (28%), Gaps = 5/114 (4%)
Query: 114 RPEVP-RPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPET 172
P RPR P + + + + Q + + P R P + +
Sbjct: 16 APTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSA-LVIGQATRPQNPRPRPPPRQKKQ 74
Query: 173 PHEPRRDSPPRHPNQFPETPRKPPARYPDI-ARAEPRTTPTTTTPPATRRGESN 225
P++ P+ P + ++P P R + G+
Sbjct: 75 A--PKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDGDVI 126
Score = 27.9 bits (61), Expect = 7.3
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 9/76 (11%)
Query: 111 TTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYP 170
RP+ PRPR P ++P++ P P+ P + + + +P RQ
Sbjct: 56 QATRPQNPRPR------PPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR---M 106
Query: 171 ETPHEPRRDSPPRHPN 186
E R ++ +
Sbjct: 107 ALKLEADRLFDVKNED 122
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 33.8 bits (76), Expect = 0.13
Identities = 11/72 (15%), Positives = 15/72 (20%), Gaps = 3/72 (4%)
Query: 105 SPSPDLTTRRPEVPRPRHPTHHHP---EHHPTPESPRREPPPRHPNQYPETPQDSPRREP 161
S +P + P P PT P P S
Sbjct: 1 SLTPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSS 60
Query: 162 SLRQPNQYPETP 173
+ E+P
Sbjct: 61 FAVPTIHFKESP 72
Score = 32.2 bits (72), Expect = 0.38
Identities = 12/76 (15%), Positives = 17/76 (22%), Gaps = 6/76 (7%)
Query: 118 PRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPR 177
P P + +++ P Q S P P
Sbjct: 2 LTPLSAITVRS--MEGPPTVQQQSPSVIRQS---PTQRRKTSTTSSTSRAPPPTNPDASS 56
Query: 178 RDSPPRHPN-QFPETP 192
S P F E+P
Sbjct: 57 SSSSFAVPTIHFKESP 72
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 33.2 bits (74), Expect = 0.22
Identities = 22/129 (17%), Positives = 31/129 (24%), Gaps = 7/129 (5%)
Query: 111 TTRRPEVPRPRHPTHHHPEHHP-TPESPRREPPP------RHPNQYPETPQDSPRREPSL 163
RRP PR P P P P P Q P L
Sbjct: 11 ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70
Query: 164 RQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGE 223
R +P P P P+ + + PA + T + + +
Sbjct: 71 RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRA 130
Query: 224 SNPGPSDKP 232
G +
Sbjct: 131 RELGARVRA 139
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A*
1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Length = 174
Score = 31.7 bits (71), Expect = 0.31
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 4 DGWELPEDDKMAIQSLYGMNHSW 26
++L +DD IQ LYG +
Sbjct: 149 QNFKLSQDDIKGIQKLYGKRSNS 171
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 32.6 bits (74), Expect = 0.35
Identities = 12/84 (14%), Positives = 19/84 (22%), Gaps = 1/84 (1%)
Query: 170 PETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPS 229
P +P P + + N P TP P +P+ P R +
Sbjct: 5 PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKN-PTPPRPAGDNATV 63
Query: 230 DKPDTCDTSYDAIAVIRTEVFVFK 253
+ F
Sbjct: 64 AAGHATLREHLRDIKAENTDANFY 87
Score = 31.9 bits (72), Expect = 0.69
Identities = 15/79 (18%), Positives = 20/79 (25%), Gaps = 1/79 (1%)
Query: 175 EPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKPDT 234
+P + P P T A PT P + NP P
Sbjct: 1 DPAAPTSPGTPGVAAATQAANGGP-ATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGD 59
Query: 235 CDTSYDAIAVIRTEVFVFK 253
T A +R + K
Sbjct: 60 NATVAAGHATLREHLRDIK 78
Score = 31.5 bits (71), Expect = 0.81
Identities = 15/92 (16%), Positives = 21/92 (22%)
Query: 128 PEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPRRDSPPRHPNQ 187
P +P +P + N P TP P + P N
Sbjct: 2 PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61
Query: 188 FPETPRKPPARYPDIARAEPRTTPTTTTPPAT 219
+ +AE PP T
Sbjct: 62 TVAAGHATLREHLRDIKAENTDANFYVCPPPT 93
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor,
metalloprotease, dependent, peptidase; 1.70A {Tannerella
forsythia} PDB: 2xs3_A
Length = 167
Score = 31.6 bits (71), Expect = 0.35
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 7 ELPEDDKMAIQSLYGMNHS 25
+L DD +A+ LYG S
Sbjct: 149 QLDNDDCLAVWDLYGYPFS 167
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform;
transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A
1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A
1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Length = 365
Score = 32.0 bits (73), Expect = 0.48
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 7/89 (7%)
Query: 125 HHHPEHHPTPESP--RREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPH-----EPR 177
HHH H ++ + R ++ RR + ++ + +
Sbjct: 2 HHHHHHSSGVDNKFNKERRRARREIRHLPNLNREQRRAFIRSLRDDPSQSANLLAEAKKL 61
Query: 178 RDSPPRHPNQFPETPRKPPARYPDIARAE 206
D+ P+ P PD A A+
Sbjct: 62 NDAQPKGTENLYFQSMGPEDELPDWAAAK 90
Score = 28.5 bits (64), Expect = 5.5
Identities = 13/83 (15%), Positives = 20/83 (24%), Gaps = 4/83 (4%)
Query: 104 YSPSPDLTTRRPEVPRPRHPTHHHP----EHHPTPESPRREPPPRHPNQYPETPQDSPRR 159
+ S E R R H P E R+ P + N E + + +
Sbjct: 6 HHSSGVDNKFNKERRRARREIRHLPNLNREQRRAFIRSLRDDPSQSANLLAEAKKLNDAQ 65
Query: 160 EPSLRQPNQYPETPHEPRRDSPP 182
P + D
Sbjct: 66 PKGTENLYFQSMGPEDELPDWAA 88
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 31.9 bits (73), Expect = 0.55
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 11/89 (12%)
Query: 124 THHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEP---RRDS 180
+ HH HH + PR P P + R + E + R
Sbjct: 3 SSHHHHHHSSGLVPRGSHMDSIPM----VPAEVGRAVIDPKSYGT-WEPLLDRFDALRAE 57
Query: 181 PPRHPNQFPETPRKPP---ARYPDIARAE 206
P P+ +P + + + +A
Sbjct: 58 APVAKVVAPDDEHEPFWLVSSFDGVMKAS 86
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv
T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A
{Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Length = 451
Score = 31.8 bits (72), Expect = 0.63
Identities = 5/64 (7%), Positives = 12/64 (18%)
Query: 96 KSWAVIPRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQD 155
+ + R P + + R + + TP
Sbjct: 169 RLLSKACRNDPFTEEEMTAMNLDRKTIVPYLENYTIGPEVDHQIVKADVAGGDAVLTPVS 228
Query: 156 SPRR 159
+
Sbjct: 229 ASWA 232
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics,
structural proteomics in europe, spine, spine-2,
spine2-complexes, hydrolase; HET: NGH; NMR {Homo
sapiens}
Length = 160
Score = 30.5 bits (68), Expect = 0.65
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 3 DDGWELPEDDKMAIQSLYG 21
G+ LP+DD IQ+LYG
Sbjct: 141 PYGFHLPKDDVKGIQALYG 159
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12,
complex (elastase inhibitor), acetohydroxamic acid,
hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB:
1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A
3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A*
3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Length = 159
Score = 30.5 bits (68), Expect = 0.70
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 6 WELPEDDKMAIQSLYG 21
+ L DD IQSLYG
Sbjct: 144 FRLSADDIRGIQSLYG 159
>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type -
matrix metalloproteinase, batimastat, hydroxamate
inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo
sapiens} SCOP: d.92.1.11
Length = 169
Score = 30.6 bits (68), Expect = 0.79
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 4 DGWELPEDDKMAIQSLYG 21
D ++LP DD IQ +YG
Sbjct: 151 DNFKLPNDDLQGIQKIYG 168
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 31.7 bits (71), Expect = 0.80
Identities = 9/105 (8%), Positives = 19/105 (18%), Gaps = 3/105 (2%)
Query: 134 PESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPRRDSPPRHPNQFPETPR 193
PR+ T + + N + + Q+ P
Sbjct: 2 KRIPRKTKGKSSGKGNDSTERSDDGSSQLRDKQNN---KAGPATTEPGTSNREQYRARPG 58
Query: 194 KPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKPDTCDTS 238
+ + P TP + +
Sbjct: 59 IASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEAD 103
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 31.4 bits (71), Expect = 0.83
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 8/96 (8%)
Query: 93 KEEKSWAVIPRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPE-SPRREPPPRHPNQYPE 151
+ E +PS D + + + + P P + PP+
Sbjct: 351 ETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGY 410
Query: 152 TPQDSPRREPSLRQPNQYPETPHEPRRDSPPRHPNQ 187
PQ P Q P P+ +PP P Q
Sbjct: 411 PPQGYPP------QGYPPPPQGAPPQG-APPAAPPQ 439
Score = 29.5 bits (66), Expect = 2.9
Identities = 21/114 (18%), Positives = 30/114 (26%), Gaps = 10/114 (8%)
Query: 108 PDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPP--PRHPNQYPETPQDSPRREPSLRQ 165
P + T + P ES P + Q +++ +
Sbjct: 331 PWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPP 390
Query: 166 PNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPAT 219
P P + PP Q PP YP P+ P PPA
Sbjct: 391 QGYAPPPQGYPPQGYPP----QGYPPQGYPPQGYP----PPPQGAPPQGAPPAA 436
Score = 29.5 bits (66), Expect = 3.2
Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 10/114 (8%)
Query: 87 LSICDRKEEKSWAVIPRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHP 146
L+ C ++++ + P + + + PP+
Sbjct: 334 LTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGY 393
Query: 147 NQYPETPQDSPRREPSLRQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYP 200
P+ P + P YP + P+ PP P P P+ P P
Sbjct: 394 APPPQGY---PPQGYP---PQGYPPQGYPPQGYPPP--PQGAP--PQGAPPAAP 437
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 30.9 bits (69), Expect = 0.88
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 4/76 (5%)
Query: 126 HHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPRRDSPPRHP 185
+ PN + P+ P+ P+ P P +P
Sbjct: 201 NVRNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDNPNNPDEPNNP---DNPNNP 257
Query: 186 NQFPETPRKPPARYPD 201
+ P+ + PD
Sbjct: 258 DN-PDNGDNNNSDNPD 272
Score = 27.9 bits (61), Expect = 7.5
Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 7/80 (8%)
Query: 116 EVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHE 175
EV + + N + +D P+ P+
Sbjct: 179 EVIGIHWGGVPNEFNGAVF------INENVRNFLKQNIEDINFANDDQPNNPDNPDNPNN 232
Query: 176 PRRDSPPRHPNQFPETPRKP 195
P + P +PN P+ P P
Sbjct: 233 PDNPNNPDNPNN-PDEPNNP 251
>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on
PAIR of basic residue disulfide bond, membrane,
metal-binding; 2.05A {Homo sapiens} PDB: 1bqq_M 1buv_M
Length = 181
Score = 30.2 bits (67), Expect = 1.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 4 DGWELPEDDKMAIQSLYGMNHSWAT 28
+ + LP+DD+ IQ LYG + T
Sbjct: 156 ENFVLPDDDRRGIQQLYGGESGFPT 180
>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo
sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A*
3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A*
3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A*
3kec_A* 2d1n_A* 1fls_A* ...
Length = 168
Score = 30.1 bits (67), Expect = 1.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 7 ELPEDDKMAIQSLYGMN 23
LP+DD IQSLYG
Sbjct: 150 MLPDDDVQGIQSLYGPG 166
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 31.0 bits (70), Expect = 1.2
Identities = 15/104 (14%), Positives = 24/104 (23%), Gaps = 8/104 (7%)
Query: 103 RYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPS 162
+ P RR P H + P P S P+
Sbjct: 4 KSKPKDASQRRRSLEPAENV-------HGAGGGAFPASQTPSKPASADGHRGPSAAFAPA 56
Query: 163 LRQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAE 206
+P + + + P+ A Y +R E
Sbjct: 57 AAEPKLFG-GFNSSDTVTSPQRAGPLAGGVTTFVALYDYESRTE 99
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor
complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Length = 167
Score = 29.7 bits (66), Expect = 1.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 7 ELPEDDKMAIQSLYGMN 23
L +DD IQ LYG +
Sbjct: 149 RLSQDDIKGIQELYGAS 165
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen
degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2
d.92.1.11
Length = 255
Score = 30.2 bits (67), Expect = 1.4
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 7 ELPEDDKMAIQSLYGMN 23
L +DD IQSLYG
Sbjct: 233 RLSQDDINGIQSLYGPP 249
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease,
inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP:
d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A
1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A*
1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A*
1ciz_A* ...
Length = 173
Score = 29.8 bits (66), Expect = 1.4
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 7 ELPEDDKMAIQSLYGMN 23
L +DD IQSLYG
Sbjct: 151 RLSQDDINGIQSLYGPP 167
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 30.6 bits (69), Expect = 1.4
Identities = 12/131 (9%), Positives = 26/131 (19%), Gaps = 17/131 (12%)
Query: 110 LTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPP----------RHPNQYPETPQDSPRR 159
+ + P + + P Q T ++ +
Sbjct: 270 TLDLPTR-------NGRYVDGLPEDDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQ 322
Query: 160 EPSLRQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPAT 219
+ + +T S P++ A + T T
Sbjct: 323 LTGVLREVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVT 382
Query: 220 RRGESNPGPSD 230
P+D
Sbjct: 383 ALSVPLVDPTD 393
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET:
CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Length = 165
Score = 29.8 bits (66), Expect = 1.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 7 ELPEDDKMAIQSLYG 21
L DD+ IQ LYG
Sbjct: 148 SLSPDDRRGIQHLYG 162
>3uek_A Poly(ADP-ribose) glycohydrolase; mammalian PArg, macrodomain; 1.95A
{Rattus norvegicus} PDB: 3uel_A*
Length = 588
Score = 30.6 bits (68), Expect = 1.5
Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 20/144 (13%)
Query: 59 LSTEVLSPRNQRKKEDRIGE----SQPFRERTLSICDRKEEKSWAVIPRYSPSPDLTT-- 112
L+ + S + K++ +I + ++ C+ + +++ IP+Y P
Sbjct: 5 LNVDGRSSKQHGKRDSKITDHFVRIPKSEDKRKEQCEVRHQRAERKIPKYVPPNLPPDKK 64
Query: 113 ----------RRPEVPRPRHPTHHHPEHHPT---PESPRREPPPRHPNQYPETPQDSPRR 159
+ P H T E P P Y + + +
Sbjct: 65 WLGTPIEEMRKMPRCGVRLPLLRPSASHTVTVRVDLLRAGEVPKPFPTHYKDLWDNKHVK 124
Query: 160 EPSLRQPNQYPETPHEPRRDSPPR 183
P Q N YP R + R
Sbjct: 125 MPCSEQ-NLYPVEDENGERTAGSR 147
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 29.0 bits (65), Expect = 1.6
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 125 HHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQ 168
HHH HH S E + R+ L++ ++
Sbjct: 1 HHHHHHHHHHSSGHIEGRHMENLYFQG-----IRKVLLLKEDHE 39
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance,
RNA processing, hydrolase, gene regulation; 2.10A
{Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB:
2hbk_A 2hbl_A* 2hbm_A*
Length = 410
Score = 30.2 bits (68), Expect = 1.6
Identities = 7/59 (11%), Positives = 15/59 (25%)
Query: 95 EKSWAVIPRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETP 153
EK A+ P + HP + +H + + ++
Sbjct: 28 EKPNALKPLSESLRLVDDDENNPSHYPHPYEYEIDHQEYSPEILQIREEIPSKSWDDSV 86
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 29.9 bits (68), Expect = 1.7
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 148 QYPETPQDSPRREPSLRQPNQYPETPHEPRRD--SPPRHPNQFPETPRKPPARYP 200
Q P P D P + P +PE P P PP+H ++ PR P R P
Sbjct: 3 QLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSK-AAAPRIPADRLP 56
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo
sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A*
2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A*
3shi_A
Length = 168
Score = 29.3 bits (65), Expect = 1.7
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 7 ELPEDDKMAIQSLYGMN 23
+L +DD IQ++YG +
Sbjct: 146 QLAQDDIDGIQAIYGRS 162
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL
oxidoreductase, alpha/beta domain, rossmann fold; HET:
SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A*
3phj_A*
Length = 269
Score = 29.8 bits (68), Expect = 1.9
Identities = 10/53 (18%), Positives = 13/53 (24%), Gaps = 9/53 (16%)
Query: 268 GYPV------LIHQFWSELPHNLTHIDAVYQRID-NHIAFFIGRQYFLFEGIR 313
G P+ LIH Y I + FL G+
Sbjct: 10 GNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSE--FLHLGLS 60
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices,
hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
g.14.1.2 g.14.1.2 g.14.1.2
Length = 425
Score = 30.2 bits (67), Expect = 2.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 4 DGWELPEDDKMAIQSLYG 21
+G L +DD I+ LYG
Sbjct: 408 EGPPLHKDDVNGIRHLYG 425
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 30.1 bits (67), Expect = 2.2
Identities = 21/126 (16%), Positives = 29/126 (23%), Gaps = 17/126 (13%)
Query: 121 RHPTHHHPEHHPTPESPRREP-------------PPRHPNQYP--ETPQDSPRREPSLRQ 165
H HHH + S + P HP+ P +P +L
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61
Query: 166 PNQYPETPHEPRRDSPPRHPNQFPETPR--KPPARYPDIARAEPRTTPTTTTPPATRRGE 223
P P H P TP + P ++ PP G
Sbjct: 62 PINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGV 121
Query: 224 SNPGPS 229
Sbjct: 122 LKVPAH 127
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA
complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Length = 171
Score = 29.1 bits (64), Expect = 2.3
Identities = 9/62 (14%), Positives = 16/62 (25%)
Query: 126 HHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPRRDSPPRHP 185
H HHP S +P P ++ + + + P P
Sbjct: 2 KHHHHHPMVPSYDSFDSEDYPAALPNHKPKGTFKDYVRDRADLNKDKPVIPAAALAGYTG 61
Query: 186 NQ 187
+
Sbjct: 62 SG 63
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex
(metalloprotease/inhibitor); HET: BSI; 1.20A {Homo
sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A
1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A*
3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A
1a86_A* 1jh1_A* 1a85_A ...
Length = 163
Score = 29.0 bits (64), Expect = 2.4
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 7 ELPEDDKMAIQSLYG 21
LP+DD IQ++YG
Sbjct: 149 SLPQDDIDGIQAIYG 163
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity,
apoptosis, hydrolase, protease protease; 2.05A {Homo
sapiens}
Length = 302
Score = 29.7 bits (66), Expect = 2.5
Identities = 6/60 (10%), Positives = 13/60 (21%)
Query: 119 RPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPRR 178
+ + P ++P + +R + YP R
Sbjct: 1 QSQGVLSSFPAPQAVQDNPAMPTSSGSEGNVKLCSLEEAQRIWKQKSAEIYPIMDKSSRT 60
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania
major}
Length = 467
Score = 29.6 bits (66), Expect = 2.5
Identities = 20/146 (13%), Positives = 35/146 (23%), Gaps = 10/146 (6%)
Query: 125 HHHPEHHPTPE----SPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPET-----PHE 175
HHH P + +R + T SP P ++
Sbjct: 7 HHHHSSGLVPRGSHMASKRCRQCSGDSASSSTSSLSPSELPPSKKAAGGQRVTAEVEVAP 66
Query: 176 PRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESNPGPSDKPDTC 235
D+ +K P + R E+ + K
Sbjct: 67 ITTDATSATVTAAGGAKKKATTGSPARRTSSAAKITNGDAGELIRTAEALAALNAKKSEK 126
Query: 236 DTSYDAIAVI-RTEVFVFKDRWMWRI 260
+ D + + RT F M++
Sbjct: 127 EIWSDVVPFVRRTTDSDFDPSRMYKF 152
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 29.2 bits (65), Expect = 2.6
Identities = 13/81 (16%), Positives = 18/81 (22%)
Query: 102 PRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREP 161
P+ + PT + P P R PP P +
Sbjct: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPM 203
Query: 162 SLRQPNQYPETPHEPRRDSPP 182
+ P P PP
Sbjct: 204 GIPPGRGTPMGMPPPGMRPPP 224
Score = 28.8 bits (64), Expect = 3.7
Identities = 16/89 (17%), Positives = 21/89 (23%), Gaps = 6/89 (6%)
Query: 132 PTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPRRDSPPRHPNQFPET 191
+P+ P+ P + P R PP
Sbjct: 139 QQVMTPQGRGTVAAAAAAATAS---IAGAPTQYPPGRGGPPPPMGRGAPPPGMM---GPP 192
Query: 192 PRKPPARYPDIARAEPRTTPTTTTPPATR 220
P P P + R TP PP R
Sbjct: 193 PGMRPPMGPPMGIPPGRGTPMGMPPPGMR 221
>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex,
hydrolyse, matrix metalloproteinase, gelatinase A,
hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens}
SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB:
1ks0_A 1cxw_A
Length = 421
Score = 29.5 bits (65), Expect = 3.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 7 ELPEDDKMAIQSLYGMN 23
L +DD IQ LYG +
Sbjct: 401 RLSQDDIKGIQELYGAS 417
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 28.4 bits (63), Expect = 3.7
Identities = 10/37 (27%), Positives = 11/37 (29%), Gaps = 3/37 (8%)
Query: 122 HPTHHHPEHHP---TPESPRREPPPRHPNQYPETPQD 155
H HHH HH E P +Q D
Sbjct: 3 HHHHHHHHHHSSGHIEGRHMLEEPAASFSQPGSMGLD 39
>3fwm_A Penicillin-binding protein 1B; bacterial cell WALL synthesis,
antibiotics design, transferase, hydrolase; HET: M0E;
2.16A {Escherichia coli} PDB: 3fwl_A* 3vma_A*
Length = 751
Score = 29.2 bits (66), Expect = 3.9
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 7/34 (20%)
Query: 434 EDR-------ISERRVGRAFSSRSTSGGLRQGAS 460
EDR IS +GRA + T+G QGAS
Sbjct: 180 EDRHFYEHDGISLYSIGRAVLANLTAGRTVQGAS 213
>3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine
esterase; 2.20A {Homo sapiens}
Length = 342
Score = 28.9 bits (65), Expect = 3.9
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 128 PEHHPTPESPRREPPPRHPNQYPETPQDSPRREPS 162
HH + R P + TPQ P ++
Sbjct: 4 SHHHHHHGAGDRGPEFPEESSPRRTPQSIPYQDLP 38
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling
protein; NMR {Homo sapiens}
Length = 101
Score = 27.2 bits (60), Expect = 4.3
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 123 PTHHHPEHHPTPESPRREPPPRHPNQYPETPQD 155
+ HH HH + PR ++ +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMISGLRTLEQSVGE 34
>1hi9_A Dciaa, dipeptide transport protein DPPA; hydrolase (protease),
protease, D-aminopeptidase, decamer,
SELF-compartmentalizing; 2.4A {Bacillus subtilis} SCOP:
c.99.1.1
Length = 274
Score = 28.6 bits (64), Expect = 4.3
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 13/58 (22%)
Query: 308 LFEGIRLLPGYPRPLTAL-GLPASLERIDAAMVWGYNSK---------TYLFSGTRYW 355
L L+ G +P + + GL + A+ GY+++ + +F ++
Sbjct: 71 LHPEADLISGDVKPFSMVEGLDDT---FRGALFLGYHARASTPGVMSHSMIFGVRHFY 125
>3iyo_A Capsid protein; amino acid sequence, cryoelectron microscopy,
dimerization, image processing, computer-assist
molecular sequence DATA; 10.50A {Hepatitis e virus}
Length = 660
Score = 28.8 bits (63), Expect = 4.9
Identities = 21/130 (16%), Positives = 29/130 (22%), Gaps = 21/130 (16%)
Query: 99 AVIPRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPR 158
IP P+ P P R +Q S R
Sbjct: 51 FAIPYIHPTNPFAPDVTAAAGAG----------PRVRQPARPLGSAWRDQAQRPAVASRR 100
Query: 159 REPSLRQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPA 218
R + P T P D+PP P + T+P T++
Sbjct: 101 RPTT---AGAAPLTAVAPAHDTPPV--------PDVDSRGAILRRQYNLSTSPLTSSVAT 149
Query: 219 TRRGESNPGP 228
P
Sbjct: 150 GTNLVLYAAP 159
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone,
triacylglycerol hydrolase, all alpha helix protein, A/B
hydrolase fold; 1.85A {Burkholderia glumae} SCOP:
a.137.15.1
Length = 332
Score = 28.6 bits (63), Expect = 5.8
Identities = 11/56 (19%), Positives = 11/56 (19%)
Query: 122 HPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPR 177
H HHH H P P P S P P
Sbjct: 6 HHHHHHSSGHIEGRHMPAAPSPAPAGAVAGGPAAGVPAAASGAAEAAMPLPAALPG 61
>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis
multifunctional enzyme, cell WALL, peptidoglycan, gamma
lactam antibiotics; HET: PL7; 2.4A {Streptococcus
pneumoniae} PDB: 2jci_A* 2je5_A*
Length = 720
Score = 28.5 bits (64), Expect = 6.1
Identities = 7/34 (20%), Positives = 9/34 (26%), Gaps = 7/34 (20%)
Query: 434 EDR-------ISERRVGRAFSSRSTSGGLRQGAS 460
ED + V A + G G S
Sbjct: 74 EDEHFKEHKGVVPNAVIPATLGKFVGLGSSSGGS 107
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 28.5 bits (64), Expect = 6.2
Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 3/73 (4%)
Query: 126 HHPEHHPT--PESPRREPPPRHPNQYPE-TPQDSPRREPSLRQPNQYPETPHEPRRDSPP 182
HH HH + N + + + + P + +R S
Sbjct: 3 HHHHHHSSGVDLGTENLYFQSMKNSGDQDSRSGHNEAKEVWSNADLTERMPVKSKRTSAL 62
Query: 183 RHPNQFPETPRKP 195
P P
Sbjct: 63 AVDIPAPPAPFDH 75
>3oa3_A Aldolase; structural genomics, seattle structural genomics center
for infectious disease, ssgcid, pathogenic fungus; 1.60A
{Coccidioides immitis}
Length = 288
Score = 28.1 bits (63), Expect = 6.5
Identities = 11/56 (19%), Positives = 17/56 (30%)
Query: 124 THHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPHEPRRD 179
HHH H T E+ + P E ++ +L+ P P
Sbjct: 2 AHHHHHHMGTLEAQTQGPGSMSSLNNEEWDLLISGKKATLQYPIPLLCYPAPEVVS 57
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 6.6
Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 31/103 (30%)
Query: 7 ELPEDDK----MAIQSLYG-----MNHSWATYGHWALSFKMTTIEAEFKWFDGGNSTICT 57
+LP + + S+ +W + H T IE+
Sbjct: 317 DLPREVLTTNPRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIES-------------- 361
Query: 58 NLSTEVLSPRNQRKKEDRIG---ESQPFRERTLSI--CDRKEE 95
S VL P RK DR+ S LS+ D +
Sbjct: 362 --SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
>4fc2_A Poly(ADP-ribose) glycohydrolase; mouse, PArg; 1.91A {Mus musculus}
Length = 521
Score = 28.6 bits (63), Expect = 6.7
Identities = 16/95 (16%), Positives = 25/95 (26%), Gaps = 13/95 (13%)
Query: 94 EEKSWAVIPRYSPSPDLTTRRPEVPRPRHPTHHHPEHH-----PTPESPRREPPPRHPNQ 148
EK W +P ++ + P H + P P
Sbjct: 4 PEKKW----LGTPIEEMR-KMPRCGIHLPSLRPSASHTVTVRVDLLRAGE--VPKPFPTH 56
Query: 149 YPETPQDSPRREPSLRQPNQYPETPHEPRRDSPPR 183
Y + + + P Q N YP R + R
Sbjct: 57 YKDLWDNKHVKMPCSEQ-NLYPVEDENGERTAGSR 90
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 28.4 bits (62), Expect = 7.0
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 4/83 (4%)
Query: 100 VIPRYSPSPDLTTRRPEVPRPRHPTHHHPEHHPTPESPRREPPPRHPNQYPETPQDSPRR 159
+ R +T R V + PT + + P + ET +P
Sbjct: 238 LDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVS 297
Query: 160 EPSLRQPNQYPETPHEPRRDSPP 182
P+ + + + +P
Sbjct: 298 TPASVEYHA----GMKSLNKAPY 316
>2olv_A Penicillin-binding protein 2; transpeptidase fold,
glycosyltransferase family 51, lysozyme transferase;
HET: M0E; 2.80A {Staphylococcus aureus} SCOP: d.2.1.10
e.3.1.1 PDB: 2olu_A* 3dwk_A*
Length = 669
Score = 28.5 bits (64), Expect = 7.2
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 434 EDR-------ISERRVGRAFSSRSTSGGLRQGAS 460
ED + +R+ A T G +GAS
Sbjct: 56 EDNRFYEHGALDYKRLFGAIGKNLTGGFGSEGAS 89
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP
kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium
tuberculosis}
Length = 281
Score = 28.1 bits (62), Expect = 7.6
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 123 PTHHHPEHHPTPESPRREP--PPRHPNQYPETPQDSPRREPSLRQPNQY 169
+HHH HH + PR P P+ + S Q + Y
Sbjct: 3 SSHHH-HHHSSGLVPRGSHMTEPDVAGAPASKPEPASTGAASAAQLSGY 50
>2bbz_A Viral CAsp8 and FADD-like apoptosis regulator; death effector
domain, viral protein; 3.80A {Molluscum contagiosum
virus subtype 1}
Length = 249
Score = 27.8 bits (61), Expect = 8.4
Identities = 11/63 (17%), Positives = 18/63 (28%)
Query: 65 SPRNQRKKEDRIGESQPFRERTLSICDRKEEKSWAVIPRYSPSPDLTTRRPEVPRPRHPT 124
R +C +E S + +P + ++ PE H
Sbjct: 187 CYAASPSLPVRTLRRGHGASEHEQLCMPVQESSDSPELLRTPVQESSSDSPEQTTLEHHH 246
Query: 125 HHH 127
HHH
Sbjct: 247 HHH 249
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 28.1 bits (62), Expect = 8.9
Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
Query: 130 HHPTPESPRREPPP--RHPNQYPETPQDSPRREPSLRQPNQYPETPHEPRRDSPPRHPNQ 187
H E ++ P P R + P + ++ T PP P Q
Sbjct: 442 HRERSEDAKKGPNPLMRRNSVTPLASPEPTKKPRINSFEEHVASTSAALPSCLPPEVPTQ 501
Query: 188 FPETPRKPPARYPDIAR 204
P K D +R
Sbjct: 502 LPGQNMKGSRSSADSSR 518
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 27.7 bits (62), Expect = 9.7
Identities = 4/29 (13%), Positives = 8/29 (27%), Gaps = 3/29 (10%)
Query: 124 THHHPEHHPTPES--PRR-EPPPRHPNQY 149
++H P+ P R +
Sbjct: 319 SNHDAATWADPQEFRPERFRAWDEDSFNF 347
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 27.9 bits (60), Expect = 9.8
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 4/88 (4%)
Query: 147 NQYPETPQDSPRREPSLRQPNQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAE 206
+ P + ++PN + + R + P+ + P P KP A E
Sbjct: 409 MPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETE 468
Query: 207 PRTTPTTTTPPATRRGESNPGPSDKPDT 234
P P E P P + +
Sbjct: 469 KPLKPAPVAPNY----EKEPTPPTRLEH 492
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A
{Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A*
2vcg_A*
Length = 369
Score = 27.7 bits (62), Expect = 9.8
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 108 PDLTTRRPEVPRPRHPTHHHPEHHPTPESPRR 139
+ + P HH H P++ RR
Sbjct: 17 GTGSLAAANLTARMQPISHHLAH---PDTKRR 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.448
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,846,759
Number of extensions: 540089
Number of successful extensions: 2200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1903
Number of HSP's successfully gapped: 197
Length of query: 530
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 432
Effective length of database: 3,965,535
Effective search space: 1713111120
Effective search space used: 1713111120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.5 bits)