RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12290
(530 letters)
>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 200
Score = 183 bits (464), Expect = 1e-55
Identities = 67/204 (32%), Positives = 108/204 (52%), Gaps = 8/204 (3%)
Query: 227 GPSDKPDTCDT--SYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNL 284
GP P+ C +D IA IR E+F FKDR++WR P P+L+ FW ELP +
Sbjct: 2 GPVT-PEICKQDIVFDGIAQIRGEIFFFKDRFIWRTVTPRDKPMGPLLVATFWPELPEKI 60
Query: 285 THIDAVYQRIDNHIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNS 344
+ FF G +Y+++ L GYP+PLT+LGLP ++R+DAA W N
Sbjct: 61 D--AVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNK 118
Query: 345 KTYLFSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQW-KDGATYFFKGKGFW 403
KTY+F+G ++W+ ++ + +P +P+ + + W + ++D G +YFFKG +
Sbjct: 119 KTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGAYYL 178
Query: 404 KFKDVSMRVEKEKPSPSAQFWMKC 427
K ++ S++ K W+ C
Sbjct: 179 KLENQSLKS--VKFGSIKSDWLGC 200
>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 178 bits (453), Expect = 6e-54
Identities = 71/199 (35%), Positives = 108/199 (54%), Gaps = 11/199 (5%)
Query: 232 PDTCD--TSYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLTHIDA 289
PD CD S DAI +R E +FKDR+ WR+ + V L FW ELP+ IDA
Sbjct: 2 PDKCDPSLSLDAITSLRGETMIFKDRFFWRLHPQQV-DAELFLTKSFWPELPNR---IDA 57
Query: 290 VYQRIDN-HIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNSKTYL 348
Y+ + I F GR+++ G +L GYP+ ++ LGLP +++I AA+ + KT L
Sbjct: 58 AYEHPSHDLIFIFRGRKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLL 117
Query: 349 FSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATYFFKGKGFWKFKDV 408
FSG + W+ DD + DYPR + E++ G+G +D + K+G YFF G +++
Sbjct: 118 FSGNQVWRYDDTNHIMDKDYPRLIEEDFPGIGDKVDAVY-EKNGYIYFFNGPIQFEYSIW 176
Query: 409 SMRVEKEKPSPSAQFWMKC 427
S R+ + P+ S + C
Sbjct: 177 SNRIVRVMPANS---ILWC 192
>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 195
Score = 176 bits (448), Expect = 4e-53
Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 10/200 (5%)
Query: 233 DTCDTS-YDAIAVIRTEVFVFKDRWMWRIGD-KGVLPGYPVLIHQFWSELPHNLTHIDAV 290
D C+ + +DAIA I ++++FKD WR + +G P P LI W LP +D+V
Sbjct: 2 DACNVNIFDAIAEIGNQLYLFKDGKYWRFSEGRGSRPQGPFLIADKWPALPRK---LDSV 58
Query: 291 YQRI-DNHIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGYNSKTYLF 349
++ + FF GRQ +++ G + PR L LGL A + ++ A+ G K LF
Sbjct: 59 FEEPLSKKLFFFSGRQVWVYTGASV--LGPRRLDKLGLGADVAQVTGALRSG-RGKMLLF 115
Query: 350 SGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATYFFKGKGFWKFKDVS 409
SG R W+ D + +P + + GV +D D FQ+++ YF + + +W+ S
Sbjct: 116 SGRRLWRFDVKAQMVDPRSASEVDRMFPGVPLDTHDVFQFREK-AYFCQDRFYWRVSSRS 174
Query: 410 MRVEKEKPSPSAQFWMKCPE 429
+ ++ ++CPE
Sbjct: 175 ELNQVDQVGYVTYDILQCPE 194
>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 167 bits (425), Expect = 6e-50
Identities = 64/190 (33%), Positives = 99/190 (52%), Gaps = 10/190 (5%)
Query: 227 GPSDKPDTCDT--SYDAIAVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNL 284
GP P CD+ ++DAI IR EV FKDR+ R I FW +LP+
Sbjct: 1 GPQT-PKACDSKLTFDAITTIRGEVMFFKDRFYMRTNPFYP-EVELNFISVFWPQLPNG- 57
Query: 285 THIDAVYQRIDNH-IAFFIGRQYFLFEGIRLLPGYPRPL-TALGLPASLERIDAAMVWGY 342
++A Y+ D + FF G +Y+ +G +L GYP+ + ++ G P +++ IDAA+
Sbjct: 58 --LEAAYEFADRDEVRFFKGNKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEEN 115
Query: 343 NSKTYLFSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATYFFKGKGF 402
KTY F +YW+ D+ +P YP+ + ++ G+G +D F KDG YFF G
Sbjct: 116 TGKTYFFVANKYWRYDEYKRSMDPGYPKMIAHDFPGIGHKVDAVF-MKDGFFYFFHGTRQ 174
Query: 403 WKFKDVSMRV 412
+KF + R+
Sbjct: 175 YKFDPKTKRI 184
>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 192
Score = 152 bits (385), Expect = 4e-44
Identities = 43/203 (21%), Positives = 73/203 (35%), Gaps = 25/203 (12%)
Query: 233 DTCDT--SYDAIAV-IRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLTHIDA 289
+ C S+DA + + FKD ++W+ G LI + W +DA
Sbjct: 2 EQCSDGWSFDATTLDDNGTMLFFKDEFVWKSH-----RGIRELISERWKNFIGP---VDA 53
Query: 290 VYQRIDNHIAFFIGRQYFLFEGIRLLPGYPRPLTALGLPASLERIDAAMVWGY----NSK 345
++ + G + +++ + YP+ L P +DAA+ +
Sbjct: 54 AFRHGHTSVYLIKGDKVWVYTSEKNEKVYPKSLQD-EFPGIPFPLDAAVECHRGECQDEG 112
Query: 346 TYLFSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWKDGATYFFKGKGFWKF 405
F G R W D TG + + + A +W G Y F+G F +F
Sbjct: 113 ILFFQGNRKWFWDLTTGTKKERSWPAVG--------NCTSALRW-LGRYYCFQGNQFLRF 163
Query: 406 KDVSMRVEKEKPSPSAQFWMKCP 428
VS V P +++ CP
Sbjct: 164 NPVSGEVPPGYPLDVRDYFLSCP 186
Score = 29.3 bits (65), Expect = 0.84
Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 3/109 (2%)
Query: 172 TPHEPRRDSPPRHPNQFPETPRKP-PARYPDIARAEPRTTPTTTTPPATRRGESNPGPSD 230
T + + P ++FP P A + + +
Sbjct: 74 TSEKNEKVYPKSLQDEFPGIPFPLDAAVECHRGECQDEGILFFQGNRKWFWDLTTGTKKE 133
Query: 231 KPDTCDTSYDAIAVIRTEVFVFKDRWMWRIGDKG--VLPGYPVLIHQFW 277
+ + + + F+ R V PGYP+ + ++
Sbjct: 134 RSWPAVGNCTSALRWLGRYYCFQGNQFLRFNPVSGEVPPGYPLDVRDYF 182
>d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 210
Score = 142 bits (360), Expect = 3e-40
Identities = 41/213 (19%), Positives = 73/213 (34%), Gaps = 31/213 (14%)
Query: 236 DTSYDAI-AVIRTEVFVFKDRWMWRIGDKGVLPGYPVLIHQFWSELPHNLTHIDAVYQRI 294
D A+ + +VF WR+ + I W + P +DA +
Sbjct: 8 DLVLSAMVSDNHGATYVFSGSHYWRLDTNRD-GWHSWPIAHQWPQGPST---VDAAFSW- 62
Query: 295 DNHIAFFIGRQYFLF---EGIRLLPGYPRPLTA---LGLPASLERIDAAMVWGYNSKTYL 348
++ + + ++F G L+ GYP+ L SLE +DAA V +S+ ++
Sbjct: 63 EDKLYLIQDTKVYVFLTKGGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHI 122
Query: 349 FSGTRYWKLDDETGRSEPDYPRNMTENWRGVGVDIDDAFQWK-----------DGATYFF 397
+G R W LD ++G + +D A + Y
Sbjct: 123 MAGRRLWWLDLKSG------AQATWTELPWPHEKVDGALCMEKPLGPNSCSTSGPNLYLI 176
Query: 398 KGKGFWKFKDVS-MRVEKEKPSP-SAQFWMKCP 428
G + ++ V + K P P + C
Sbjct: 177 HGPNLYCYRHVDKLNAAKNLPQPQRVSRLLGCT 209
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 31.8 bits (72), Expect = 0.090
Identities = 9/46 (19%), Positives = 14/46 (30%)
Query: 129 EHHPTPESPRREPPPRHPNQYPETPQDSPRREPSLRQPNQYPETPH 174
++ +P +P P P P E + P P T
Sbjct: 90 KNQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTTQ 135
>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens),
fibroblast [TaxId: 9606]}
Length = 168
Score = 28.7 bits (63), Expect = 1.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 6 WELPEDDKMAIQSLYGMN 23
+ L +DD IQSLYG
Sbjct: 150 FRLSQDDINGIQSLYGPP 167
>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 157
Score = 27.9 bits (61), Expect = 1.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 7 ELPEDDKMAIQSLYGMN 23
+L +DD IQ++YG +
Sbjct: 141 QLAQDDIDGIQAIYGRS 157
>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans
[TaxId: 1377]}
Length = 229
Score = 28.4 bits (62), Expect = 2.1
Identities = 6/72 (8%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
Query: 364 SEPDYPRNMTENWRGVGVDIDDAFQWKDGATYFFKGKGFWKFKDVSMRVEKEKPSPSAQF 423
++ DY + G + + ++ +++P P
Sbjct: 129 TDVDYAKIAE-AQGAKGFTVSRIEDMDRVMAEAVAANKAGHTVVIDCKITQDRPIPVETL 187
Query: 424 WMKCPEISSPED 435
+ ++ S ++
Sbjct: 188 KLD-SKLYSEDE 198
>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 27.9 bits (61), Expect = 2.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 4 DGWELPEDDKMAIQSLYG 21
++L +DD IQ LYG
Sbjct: 148 QNFKLSQDDIKGIQKLYG 165
>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 162
Score = 27.9 bits (61), Expect = 2.2
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 4 DGWELPEDDKMAIQSLYG 21
L DD+ IQ LYG
Sbjct: 145 YPLSLSPDDRRGIQHLYG 162
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 27.7 bits (60), Expect = 2.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 3 DDGWELPEDDKMAIQSLYG 21
D ++LP DD IQ +YG
Sbjct: 150 TDNFKLPNDDLQGIQKIYG 168
>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 158
Score = 27.2 bits (59), Expect = 3.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 6 WELPEDDKMAIQSLYG 21
+ L DD IQSLYG
Sbjct: 143 FRLSADDIRGIQSLYG 158
>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 169
Score = 27.1 bits (59), Expect = 3.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 6 WELPEDDKMAIQSLYGMN 23
+ LP+DD IQSLYG
Sbjct: 149 FMLPDDDVQGIQSLYGPG 166
>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase
(CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 26.9 bits (58), Expect = 4.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 7 ELPEDDKMAIQSLYGMN 23
LP+DD+ IQ LYG
Sbjct: 157 VLPDDDRRGIQQLYGGE 173
>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId:
9606]}
Length = 161
Score = 26.8 bits (58), Expect = 4.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 6 WELPEDDKMAIQSLYGMN 23
+ L +DD IQ LYG +
Sbjct: 143 FRLSQDDIKGIQELYGAS 160
>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 163
Score = 26.3 bits (57), Expect = 6.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 7 ELPEDDKMAIQSLYG 21
LP+DD IQ++YG
Sbjct: 149 SLPQDDIDGIQAIYG 163
>d1c8da_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Canine parvovirus [TaxId: 10788]}
Length = 548
Score = 26.4 bits (58), Expect = 10.0
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 167 NQYPETPHEPRRDSPPRHPNQFPETPRKPPARYPDIARAEPRTTPTTTTPPATRRGESNP 226
N P TP R ++ +P + P P P RY + T T+ T
Sbjct: 145 NTMPFTPAAMRSETLGFYPWK-PTIP--TPWRYYFQWDRTLIPSHTGTSGTPTNIYHGTD 201
Query: 227 G 227
Sbjct: 202 P 202
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.448
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,246,553
Number of extensions: 112903
Number of successful extensions: 368
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 38
Length of query: 530
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 440
Effective length of database: 1,171,896
Effective search space: 515634240
Effective search space used: 515634240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.7 bits)