BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12291
(404 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/370 (29%), Positives = 166/370 (44%), Gaps = 28/370 (7%)
Query: 29 CWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL 88
C ++ +P + IP + R++DLG N++ TL++D F L EL+L +N +S +
Sbjct: 18 CHRKRFVAVP--EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA 75
Query: 89 FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
F + NL T+ L N +K +P F G LT + +S N I L +F DL +L+ L++
Sbjct: 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135
Query: 149 SQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGL 208
N L I + FSG+ SL++L L+ + +P L L L LR+ ++ IR
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195
Query: 209 FNYFKHLTFLELSE---------NWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFAN 259
F L LE+S N + LN LTSL H + +P + +
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLN------LTSLSITHCN---LTAVPYLAVRH 246
Query: 260 LQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSN 319
L L L L N I + ++ AF + +L+ L + N
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306
Query: 320 KLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYM--ARW-LRANRRKVWDSKPTCRGPG 376
+L L + NL TL L NP CDC +L++ RW L NR+ +PTC P
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQ-----QPTCATPE 361
Query: 377 NLGGKSVEDM 386
+ GK +D
Sbjct: 362 FVQGKEFKDF 371
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 123/239 (51%), Gaps = 28/239 (11%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
V S + ++P+N+ D ++LDL N L+S+ F + L+ L L N++ LP
Sbjct: 21 VDCSSKKLTAIPSNIPADT---KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE 241
GIF +LK L+ L + +N+L + G+F+ +L L L N + SL F LT L
Sbjct: 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137
Query: 242 LHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLD 301
L LG N ++++P G F L SL++L LY+N ++ +
Sbjct: 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG---------------------- 175
Query: 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDC-AILYMARWLR 359
AF+ + LK L+LD+N+L+ + + L L L+L +NPW C C I+YMA+WL+
Sbjct: 176 --AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLK 232
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 110/207 (53%), Gaps = 3/207 (1%)
Query: 25 HTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL 84
+++ C + + +P + IP D + +DL N+LS+L AF L KL L L N L L
Sbjct: 19 NSVDCSSKKLTAIPSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76
Query: 85 PGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
P +F NL T+ ++ N ++ LP F + L ++L N ++SLP VF L L
Sbjct: 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
L L N L S+ G F + SLK L+L +N++ ++P G FD L L L L NN+L +
Sbjct: 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
Query: 205 RPGLFNYFKHLTFLELSEN-WISSLNG 230
G F+ + L L+L EN W + NG
Sbjct: 197 PEGAFDSLEKLKMLQLQENPWDCTCNG 223
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 103/192 (53%), Gaps = 3/192 (1%)
Query: 80 HLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHD 139
L+ +P + T +DL N + +LPS F +L ++ L+ N +++LPA +F +
Sbjct: 27 KLTAIPSNIPADT---KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE 83
Query: 140 LISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
L +LE L ++ N L ++ G F + +L L+L N++ LPP +FD L L +LSL N
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 200 RLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFAN 259
L + G+F+ L L L N + + F +LT LK L L N ++ +P G+F +
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203
Query: 260 LQSLEKLFLYSN 271
L+ L+ L L N
Sbjct: 204 LEKLKMLQLQEN 215
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 88/175 (50%)
Query: 73 ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL 132
+L L+ N LS LP K F L + L+ N ++TLP+ FK L + ++ N +++L
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 133 PANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLD 192
P VF L++L EL L +N L S+ F + L L L N + LP G+FD L L
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160
Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQN 247
L L NN+L + G F+ L L+L N + + F L LK L L +N
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 126/244 (51%), Gaps = 5/244 (2%)
Query: 29 CWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL 88
C ++++ E+P I + R+++L NQ+ + ++F L L L+L +NH+ +
Sbjct: 50 CVRKNLREVPDG--ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA 107
Query: 89 FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
F NL+T++L N + T+P+ F +L + L N IES+P+ F+ + SL LDL
Sbjct: 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167
Query: 149 SQ-NVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPG 207
+ L+ I G F G+ +L+ L L + ++P L LD L L N LS IRPG
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPG 225
Query: 208 LFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLF 267
F HL L + ++ I + + F L SL E++L N + +P F L LE++
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285
Query: 268 LYSN 271
L+ N
Sbjct: 286 LHHN 289
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 127/291 (43%), Gaps = 51/291 (17%)
Query: 121 VVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQL 180
++ L N I+ + N F L LE L LS+N + +I+ G F+G+ +L L+L NR+ +
Sbjct: 68 LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI 127
Query: 181 PPGIFDDLKYLDFLSLRNN-------------------------RLSFIRPGLFNYFKHL 215
P G F L L L LRNN RLS+I G F +L
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187
Query: 216 TFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE 275
+L L+ + + + L L EL L N++ I GSF L L+KL++ + IQ
Sbjct: 188 RYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ- 244
Query: 276 LHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
++ AF+ + L ++ L N L L D + L +L
Sbjct: 245 -----------------------VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281
Query: 336 ITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDM 386
+ L NPW+C+C IL+++ W++ C P NL G+ + ++
Sbjct: 282 ERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGEL 332
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 123/244 (50%), Gaps = 5/244 (2%)
Query: 29 CWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL 88
C ++++ E+P IPV+ R ++L N + + D F L L L+L KN + ++
Sbjct: 21 CTRRELAEVPAS--IPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGA 78
Query: 89 FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
F +L+T++L N + T+P+ F+ +L + L N IES+P+ F+ + SL LDL
Sbjct: 79 FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Query: 149 SQ-NVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPG 207
+ L I F G+ +L+ L L + +P L L+ L L NRL IRPG
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN--LTALVRLEELELSGNRLDLIRPG 196
Query: 208 LFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLF 267
F L L L ++++ + F L SL+EL+L N + ++P F L LE++
Sbjct: 197 SFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVH 256
Query: 268 LYSN 271
L N
Sbjct: 257 LNHN 260
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 123/266 (46%), Gaps = 3/266 (1%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
+ L N+I+ + + F L LE L LS+N++ I+ G F+G+ SL L+L NR+ +P
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSE-NWISSLNGDEFSQLTSLK 240
F+ L L L LRNN + I FN L L+L E + ++ F L +L+
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 241 ELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYL 300
L+LG ++ IP + L LE+L L N + + +
Sbjct: 160 YLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217
Query: 301 DTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRA 360
+ AF+ + L++L L N L L D + L L + L NPWHC+C +L+++ WL+
Sbjct: 218 ERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKE 277
Query: 361 NRRKVWDSKPTCRGPGNLGGKSVEDM 386
C P L G+ + ++
Sbjct: 278 TVPSNTTCCARCHAPAGLKGRYIGEL 303
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 6/176 (3%)
Query: 169 RLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSL 228
R+ + ++P I + +YL+ L+ N + IR F + +HL L+LS+N + +
Sbjct: 18 RVICTRRELAEVPASIPVNTRYLN---LQENSIQVIRTDTFKHLRHLEILQLSKNLVRKI 74
Query: 229 NGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXX-XXXXXXX 287
F+ L SL L L N + T+P +F L L +L+L +N I+ +
Sbjct: 75 EVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLR 134
Query: 288 XXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
Y+ AFE +++L+ L L L+ + +L+ L L L+L+ N
Sbjct: 135 RLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP--NLTALVRLEELELSGN 188
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 123/244 (50%), Gaps = 5/244 (2%)
Query: 29 CWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL 88
C ++++ E+P IPV+ R ++L N + + D F L L L+L KN + ++
Sbjct: 21 CTRRELAEVPAS--IPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGA 78
Query: 89 FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
F +L+T++L N + T+P+ F+ +L + L N IES+P+ F+ + SL LDL
Sbjct: 79 FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Query: 149 SQ-NVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPG 207
+ L I F G+ +L+ L L + +P L L+ L L NRL IRPG
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN--LTALVRLEELELSGNRLDLIRPG 196
Query: 208 LFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLF 267
F L L L ++++ + F L SL+EL+L N + ++P F L LE++
Sbjct: 197 SFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVH 256
Query: 268 LYSN 271
L N
Sbjct: 257 LNHN 260
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 123/266 (46%), Gaps = 3/266 (1%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
+ L N+I+ + + F L LE L LS+N++ I+ G F+G+ SL L+L NR+ +P
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSE-NWISSLNGDEFSQLTSLK 240
F+ L L L LRNN + I FN L L+L E + ++ F L +L+
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 241 ELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYL 300
L+LG ++ IP + L LE+L L N + + +
Sbjct: 160 YLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217
Query: 301 DTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRA 360
+ AF+ + L++L L N L L D + L L + L NPWHC+C +L+++ WL+
Sbjct: 218 ERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKE 277
Query: 361 NRRKVWDSKPTCRGPGNLGGKSVEDM 386
C P L G+ + ++
Sbjct: 278 TVPSNTTCCARCHAPAGLKGRYIGEL 303
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 6/176 (3%)
Query: 169 RLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSL 228
R+ + ++P I + +YL+ L+ N + IR F + +HL L+LS+N + +
Sbjct: 18 RVICTRRELAEVPASIPVNTRYLN---LQENSIQVIRTDTFKHLRHLEILQLSKNLVRKI 74
Query: 229 NGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXX-XXXXXXX 287
F+ L SL L L N + T+P +F L L +L+L +N I+ +
Sbjct: 75 EVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLR 134
Query: 288 XXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
Y+ AFE +++L+ L L L+ + +L+ L L L+L+ N
Sbjct: 135 RLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP--NLTALVRLEELELSGN 188
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 124/271 (45%), Gaps = 6/271 (2%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
+ L N I+ + A+ F L LE L L +N + I+ G F+G+ SL L+L N + +P
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSE-NWISSLNGDEFSQLTSLK 240
G F+ L L L LRNN + I FN L L+L E + ++ F L +LK
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199
Query: 241 ELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYL 300
L+LG I+ +P + L LE+L + N+ E+ +
Sbjct: 200 YLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257
Query: 301 DTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRA 360
+ AF+ + L +L L N L L D + L L+ L L NPW+CDC IL++A WLR
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLRE 317
Query: 361 NRRKVWDSKPTCRGPGNLGGK---SVEDMSF 388
C P ++ G+ V+ SF
Sbjct: 318 YIPTNSTCCGRCHAPMHMRGRYLVEVDQASF 348
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 5/244 (2%)
Query: 29 CWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL 88
C ++ + E+P Q IP + R ++L N + + D F L+ L L+L +N + ++
Sbjct: 61 CTRRGLSEVP--QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA 118
Query: 89 FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
F +L+T++L N + +PS F+ +L + L N IES+P+ F+ + SL LDL
Sbjct: 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL 178
Query: 149 SQ-NVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPG 207
+ L I G F G+++LK L L I +P L L+ L + N IRPG
Sbjct: 179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPG 236
Query: 208 LFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLF 267
F+ L L + + +S + + F L SL EL+L N + ++P F L+ L +L
Sbjct: 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296
Query: 268 LYSN 271
L+ N
Sbjct: 297 LHHN 300
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Query: 43 IPVDIRVIDLG-INQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLS 101
+P +R +DLG + +L +S+ AF GL+ L L L ++ ++P + L +++S
Sbjct: 170 VPSLMR-LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMS 226
Query: 102 QNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTF 161
N + F G L + + + + + N F L SL EL+L+ N L+S+ + F
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286
Query: 162 SGMYSLKRLKLQSNRIN 178
+ + L L L N N
Sbjct: 287 TPLRYLVELHLHHNPWN 303
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 125/293 (42%), Gaps = 51/293 (17%)
Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNV-LTSIQY 158
L N I +P+ F+ LT++ L N + + A F L LE+LDLS N L S+
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 159 GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFL 218
TF G+ L L L + +L PG+F L L +L L++N L + F +LT L
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 157
Query: 219 ELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHX 278
L N ISS+ F L SL L L QN + + +F +L L L+L++NN+
Sbjct: 158 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA--- 214
Query: 279 XXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITL 338
L T+A P+ LQY L
Sbjct: 215 ---------------------LPTEALAPL----------RALQY--------------L 229
Query: 339 KLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL 391
+L NPW CDC + WL+ R S+ C P L G+ ++ ++ +DL
Sbjct: 230 RLNDNPWVCDCRARPLWAWLQKFRGS--SSEVPCSLPQRLAGRDLKRLAANDL 280
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 3/223 (1%)
Query: 26 TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
T SC +Q ++ +P IP + I L N++S + +F LT L L N L+ +
Sbjct: 14 TTSCPQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 71
Query: 86 GKLFISTINLSTMDLSQNL-IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
F L +DLS N ++++ F G RL + L ++ L +F L +L+
Sbjct: 72 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 131
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
L L N L ++ TF + +L L L NRI+ +P F L LD L L NR++ +
Sbjct: 132 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 191
Query: 205 RPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQN 247
P F L L L N +S+L + + L +L+ L L N
Sbjct: 192 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 125/293 (42%), Gaps = 51/293 (17%)
Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNV-LTSIQY 158
L N I +P+ F+ LT++ L N + + A F L LE+LDLS N L S+
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 159 GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFL 218
TF G+ L L L + +L PG+F L L +L L++N L + F +LT L
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158
Query: 219 ELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHX 278
L N ISS+ F L SL L L QN + + +F +L L L+L++NN+
Sbjct: 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA--- 215
Query: 279 XXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITL 338
L T+A P+ LQY L
Sbjct: 216 ---------------------LPTEALAPL----------RALQY--------------L 230
Query: 339 KLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL 391
+L NPW CDC + WL+ R S+ C P L G+ ++ ++ +DL
Sbjct: 231 RLNDNPWVCDCRARPLWAWLQKFRGS--SSEVPCSLPQRLAGRDLKRLAANDL 281
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 3/223 (1%)
Query: 26 TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
T SC +Q ++ +P IP + I L N++S + +F LT L L N L+ +
Sbjct: 15 TTSCPQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Query: 86 GKLFISTINLSTMDLSQNL-IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
F L +DLS N ++++ F G RL + L ++ L +F L +L+
Sbjct: 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
L L N L ++ TF + +L L L NRI+ +P F L LD L L NR++ +
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192
Query: 205 RPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQN 247
P F L L L N +S+L + + L +L+ L L N
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 130/308 (42%), Gaps = 30/308 (9%)
Query: 85 PGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
PG T Q ++ +P+ + R + L N I +PA F +L
Sbjct: 2 PGACVCYNEPKVTTSCPQQGLQAVPTGIPASSQR---IFLHGNRISYVPAASFQSCRNLT 58
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN-RINQLPPGIFDDLKYLDFLSLRNNRLSF 203
L L N L I F+G+ L++L L N ++ + P F L +L L L L
Sbjct: 59 ILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQE 118
Query: 204 IRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSL 263
+ PGLF L +L L +N + +L + F L +L L L N I ++P +F L SL
Sbjct: 119 LGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSL 178
Query: 264 EKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQY 323
++L L+ N++ +H AF + L L L +N L
Sbjct: 179 DRLLLHQNHVARVH------------------------PHAFRDLGRLMTLYLFANNLSM 214
Query: 324 LATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSV 383
L + L L +L L+L NPW CDC + WL+ R S+ C P L G+ +
Sbjct: 215 LPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGS--SSEVPCNLPQRLAGRDL 272
Query: 384 EDMSFDDL 391
+ ++ DL
Sbjct: 273 KRLAASDL 280
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 100/223 (44%), Gaps = 3/223 (1%)
Query: 26 TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
T SC +Q ++ +P IP + I L N++S + +F LT L L N L+ +
Sbjct: 14 TTSCPQQGLQAVPTG--IPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGID 71
Query: 86 GKLFISTINLSTMDLSQNL-IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
F L +DLS N ++ + T F+G L + L ++ L +F L +L+
Sbjct: 72 AAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQ 131
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
L L N L ++ TF + +L L L NRI +P F L LD L L N ++ +
Sbjct: 132 YLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARV 191
Query: 205 RPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQN 247
P F L L L N +S L + L SL+ L L N
Sbjct: 192 HPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 113/248 (45%), Gaps = 52/248 (20%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
V +++S+P+ + D E+LDL L ++ TF G+ L L L N++ L
Sbjct: 19 VDCQGKSLDSVPSGIPADT---EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE 241
G+FDDL L L L NN+L+ + G+F++ L L L N + SL F +LT LKE
Sbjct: 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 242 LHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLD 301
L L N +++IPAG+F L +L+ L L +N +Q +
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH----------------------- 172
Query: 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCD-CAILYMARWLRA 360
AF+ L KLQ T+ L N + C C ILY+++W+R
Sbjct: 173 -GAFD---RLGKLQ---------------------TITLFGNQFDCSRCEILYLSQWIRE 207
Query: 361 NRRKVWDS 368
N KV D
Sbjct: 208 NSNKVKDG 215
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 91/179 (50%), Gaps = 2/179 (1%)
Query: 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG 86
+ C + ++ +P IP D +DL L+TLS F GL KLT L L N L L
Sbjct: 19 VDCQGKSLDSVPSG--IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76
Query: 87 KLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEEL 146
+F L T+ L+ N + +LP F +L + L N ++SLP+ VF L L+EL
Sbjct: 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 147 DLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR 205
L+ N L SI G F + +L+ L L +N++ +P G FD L L ++L N+ R
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 92/199 (46%), Gaps = 27/199 (13%)
Query: 73 ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL 132
E+ + L +P + T L DL + TL F+G +LT + L YN +++L
Sbjct: 18 EVDCQGKSLDSVPSGIPADTEKL---DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL 74
Query: 133 PANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLD 192
A VF DL L L L+ N L S+ G F + L +L L N++ LP G+FD L L
Sbjct: 75 SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134
Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
L L N+L I G F+ +LT+L+ L L N ++++
Sbjct: 135 ELRLNTNQLQSIPAGAFD------------------------KLTNLQTLSLSTNQLQSV 170
Query: 253 PAGSFANLQSLEKLFLYSN 271
P G+F L L+ + L+ N
Sbjct: 171 PHGAFDRLGKLQTITLFGN 189
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 112/248 (45%), Gaps = 52/248 (20%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
V +++S+P+ + D E+LDL L ++ TF G+ L L L N++ L
Sbjct: 19 VDCQGKSLDSVPSGIPADT---EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE 241
G+FDDL L L L NN+L+ + G+F++ L L L N + SL F +LT LKE
Sbjct: 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 242 LHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLD 301
L L N +++IPAG+F L +L+ L L +N +Q +
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH----------------------- 172
Query: 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCD-CAILYMARWLRA 360
AF+ L KLQ T+ L N + C C LY+++W+R
Sbjct: 173 -GAFD---RLGKLQ---------------------TITLFGNQFDCSRCETLYLSQWIRE 207
Query: 361 NRRKVWDS 368
N KV D
Sbjct: 208 NSNKVKDG 215
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 91/179 (50%), Gaps = 2/179 (1%)
Query: 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG 86
+ C + ++ +P IP D +DL L+TLS F GL KLT L L N L L
Sbjct: 19 VDCQGKSLDSVPSG--IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76
Query: 87 KLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEEL 146
+F L T+ L+ N + +LP F +L + L N ++SLP+ VF L L+EL
Sbjct: 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 147 DLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR 205
L+ N L SI G F + +L+ L L +N++ +P G FD L L ++L N+ R
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 92/199 (46%), Gaps = 27/199 (13%)
Query: 73 ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL 132
E+ + L +P + T L DL + TL F+G +LT + L YN +++L
Sbjct: 18 EVDCQGKSLDSVPSGIPADTEKL---DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL 74
Query: 133 PANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLD 192
A VF DL L L L+ N L S+ G F + L +L L N++ LP G+FD L L
Sbjct: 75 SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134
Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
L L N+L I G F+ +LT+L+ L L N ++++
Sbjct: 135 ELRLNTNQLQSIPAGAFD------------------------KLTNLQTLSLSTNQLQSV 170
Query: 253 PAGSFANLQSLEKLFLYSN 271
P G+F L L+ + L+ N
Sbjct: 171 PHGAFDRLGKLQTITLFGN 189
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 95/176 (53%), Gaps = 3/176 (1%)
Query: 33 DMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIST 92
D++ + Q +P ++R + LG N+L +S A L LT L L N L LP +F
Sbjct: 52 DIKSVQGIQYLP-NVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKL 108
Query: 93 INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNV 152
NL + L +N +++LP F LT + L++N ++SLP VF L +L ELDLS N
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168
Query: 153 LTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGL 208
L S+ G F + LK L+L N++ +P G+FD L L ++ L +N PG+
Sbjct: 169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 224
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 87/147 (59%), Gaps = 6/147 (4%)
Query: 131 SLPANVFHDLISLEELD------LSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGI 184
+L N HD+ +L+EL L+ N L S+ G F + +LK L L N++ LP G+
Sbjct: 69 ALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 185 FDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHL 244
FD L L +L+L +N+L + G+F+ +LT L+LS N + SL F +LT LK+L L
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188
Query: 245 GQNYIETIPAGSFANLQSLEKLFLYSN 271
QN ++++P G F L SL+ ++L+ N
Sbjct: 189 YQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 16/182 (8%)
Query: 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSG-- 163
+T+ + K ++ V Q N+I+ + AN D+ S++ + L +++Y G
Sbjct: 20 ETIKANLKKKSVTDAVTQNELNSIDQIIAN-NSDIKSVQGI----QYLPNVRYLALGGNK 74
Query: 164 ---------MYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKH 214
+ +L L L N++ LP G+FD L L L L N+L + G+F+ +
Sbjct: 75 LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134
Query: 215 LTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQ 274
LT+L L+ N + SL F +LT+L EL L N ++++P G F L L+ L LY N ++
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Query: 275 EL 276
+
Sbjct: 195 SV 196
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 88/167 (52%), Gaps = 3/167 (1%)
Query: 33 DMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIST 92
D++ + Q +P ++R + LG N+L +S A L LT L L N L LP +F
Sbjct: 52 DIKSVQGIQYLP-NVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKL 108
Query: 93 INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNV 152
NL + L +N +++LP F LT + L +N ++SLP VF L +L LDL N
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQ 168
Query: 153 LTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
L S+ G F + LK+L L N++ +P G+FD L L + L NN
Sbjct: 169 LQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 83/147 (56%), Gaps = 6/147 (4%)
Query: 131 SLPANVFHDLISLEELD------LSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGI 184
+L N HD+ +L+EL L+ N L S+ G F + +LK L L N++ LP G+
Sbjct: 69 ALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 185 FDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHL 244
FD L L +L L +N+L + G+F+ +LT L+L N + SL F +LT LK+L L
Sbjct: 129 FDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSL 188
Query: 245 GQNYIETIPAGSFANLQSLEKLFLYSN 271
N ++++P G F L SL ++L +N
Sbjct: 189 NDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 3/167 (1%)
Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
+L+L N+L I +LT+L L+ N + SL F +LT+LKEL L +N ++++
Sbjct: 67 YLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 253 PAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLK 312
P G F L +L L+LY N +Q L + L F+ + LK
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLK 184
Query: 313 KLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWL 358
+L L+ N+L+ + L +L + L NPW C C+ ILY++RW+
Sbjct: 185 QLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWI 231
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 73/135 (54%)
Query: 113 FKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKL 172
K LT + L+ N ++SLP VF L +L+EL L +N L S+ G F + +L L L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDE 232
N++ LP G+FD L L L L NN+L + G+F+ L L L++N + S+
Sbjct: 141 YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGV 200
Query: 233 FSQLTSLKELHLGQN 247
F +LTSL + L N
Sbjct: 201 FDRLTSLTHIWLLNN 215
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 123/255 (48%), Gaps = 11/255 (4%)
Query: 24 IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSE 83
+ + C +E++P D +P D ++DL N+++ + F L L L L N +S+
Sbjct: 33 LRVVQCSDLGLEKVPKD--LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 84 LPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISL 143
+ F + L + LS+N +K LP K L +++ N I + +VF+ L +
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLKELPEKMPK---TLQELRVHENEITKVRKSVFNGLNQM 147
Query: 144 EELDLSQNVLTS--IQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
++L N L S I+ G F GM L +++ I +P G+ L L L N++
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKI 204
Query: 202 SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ 261
+ + +L L LS N IS+++ + L+ELHL N + +P G A+ +
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHK 263
Query: 262 SLEKLFLYSNNIQEL 276
++ ++L++NNI +
Sbjct: 264 YIQVVYLHNNNISAI 278
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 94/236 (39%), Gaps = 29/236 (12%)
Query: 109 PSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK 168
P F+ L VVQ S +E +P ++ D L DL N +T I+ G F + +L
Sbjct: 23 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLH 79
Query: 169 RLKLQSNRINQLPPGIFDDL---------------------KYLDFLSLRNNRLSFIRPG 207
L L +N+I+++ PG F L K L L + N ++ +R
Sbjct: 80 TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS 139
Query: 208 LFNYFKHLTFLELSENWI--SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEK 265
+FN + +EL N + S + F + L + + I TIP G SL +
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTE 196
Query: 266 LFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKL 321
L L N I ++ +D + HL++L L++NKL
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 123/255 (48%), Gaps = 11/255 (4%)
Query: 24 IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSE 83
+ + C +E++P D +P D ++DL N+++ + F L L L L N +S+
Sbjct: 33 LRVVQCSDLGLEKVPKD--LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 84 LPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISL 143
+ F + L + LS+N +K LP K L +++ N I + +VF+ L +
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLKELPEKMPK---TLQELRVHENEITKVRKSVFNGLNQM 147
Query: 144 EELDLSQNVLTS--IQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
++L N L S I+ G F GM L +++ I +P G+ L L L N++
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKI 204
Query: 202 SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ 261
+ + +L L LS N IS+++ + L+ELHL N + +P G A+ +
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHK 263
Query: 262 SLEKLFLYSNNIQEL 276
++ ++L++NNI +
Sbjct: 264 YIQVVYLHNNNISAI 278
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 94/236 (39%), Gaps = 29/236 (12%)
Query: 109 PSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK 168
P F+ L VVQ S +E +P ++ D L DL N +T I+ G F + +L
Sbjct: 23 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLH 79
Query: 169 RLKLQSNRINQLPPGIFDDL---------------------KYLDFLSLRNNRLSFIRPG 207
L L +N+I+++ PG F L K L L + N ++ +R
Sbjct: 80 TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS 139
Query: 208 LFNYFKHLTFLELSENWI--SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEK 265
+FN + +EL N + S + F + L + + I TIP G SL +
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTE 196
Query: 266 LFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKL 321
L L N I ++ +D + HL++L L++NKL
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 3/131 (2%)
Query: 141 ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR 200
S E+ + LTS+ G S S RL+L+SN++ LP G+FD L L LSL N+
Sbjct: 7 CSGTEIRCNSKGLTSVPTGIPS---SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ 63
Query: 201 LSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL 260
+ + G+F+ LT L L EN + SL F +LT LKEL L N ++++P G F L
Sbjct: 64 IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRL 123
Query: 261 QSLEKLFLYSN 271
SL+K++L++N
Sbjct: 124 TSLQKIWLHTN 134
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 26/162 (16%)
Query: 216 TFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE 275
T LEL N + SL F +LT L +L L QN I+++P G F L L L+L+ N +Q
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 276 LHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
L F+ + LK+L LD+N+L+ + L +L
Sbjct: 91 L------------------------PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL 126
Query: 336 ITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGPG 376
+ L NPW C C I Y++RWL N +K S C G G
Sbjct: 127 QKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGSG 167
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%)
Query: 72 TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
T L+L N L LP +F L+ + LSQN I++LP F +LT++ L N ++S
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
LP VF L L+EL L N L S+ G F + SL+++ L +N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 3/128 (2%)
Query: 72 TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
TE++ L+ +P + S L +L N +++LP F +LT + LS N I+S
Sbjct: 10 TEIRCNSKGLTSVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS 66
Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYL 191
LP VF L L L L +N L S+ G F + LK L L +N++ +P GIFD L L
Sbjct: 67 LPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL 126
Query: 192 DFLSLRNN 199
+ L N
Sbjct: 127 QKIWLHTN 134
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG 86
+ C + + +P IP ++L N+L +L F L +LT+L L +N + LP
Sbjct: 12 IRCNSKGLTSVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69
Query: 87 KLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEEL 146
+F L+ + L +N +++LP+ F +L + L N ++S+P +F L SL+++
Sbjct: 70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
Query: 147 DLSQN 151
L N
Sbjct: 130 WLHTN 134
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 2/159 (1%)
Query: 26 TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
T+ C+ Q +P IP +DL N L +L F L LT+L L N L LP
Sbjct: 11 TVECYSQGRTSVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP 68
Query: 86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEE 145
+F +L+ ++LS N +++LP+ F +L + L+ N ++SLP VF L L++
Sbjct: 69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128
Query: 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGI 184
L L QN L S+ G F + SL+ + L N + PGI
Sbjct: 129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 167
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 73/126 (57%)
Query: 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR 205
LDL N L S+ G F + SL +L L N++ LP G+F+ L L +L+L N+L +
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 206 PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEK 265
G+F+ L L L+ N + SL F +LT LK+L L QN ++++P G F L SL+
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152
Query: 266 LFLYSN 271
++L+ N
Sbjct: 153 IWLHDN 158
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Query: 98 MDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ 157
+DL N +K+LP+ F LT + L N ++SLP VF+ L SL L+LS N L S+
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 158 YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTF 217
G F + LK L L +N++ LP G+FD L L L L N+L + G+F+ L +
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152
Query: 218 LELSEN-WISSLNGDEF 233
+ L +N W + G +
Sbjct: 153 IWLHDNPWDCTCPGIRY 169
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 74/139 (53%)
Query: 70 KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAI 129
+ T L L N L LP +F +L+ + L N +++LP+ F LT + LS N +
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88
Query: 130 ESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLK 189
+SLP VF L L+EL L+ N L S+ G F + LK L+L N++ +P G+FD L
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148
Query: 190 YLDFLSLRNNRLSFIRPGL 208
L ++ L +N PG+
Sbjct: 149 SLQYIWLHDNPWDCTCPGI 167
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 62/107 (57%)
Query: 170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229
L L++N + LP G+FD+L L L L N+L + G+FN LT+L LS N + SL
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
F +LT LKEL L N ++++P G F L L+ L LY N ++ +
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV 139
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 85/190 (44%), Gaps = 28/190 (14%)
Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSL 239
+P GI YLD L N L + G+F+ LT L L N + SL F++LTSL
Sbjct: 22 VPTGIPAQTTYLD---LETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78
Query: 240 KELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRY 299
L+L N ++++P G F L L++L L +N +Q L
Sbjct: 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD--------------------- 117
Query: 300 LDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDC-AILYMARWL 358
F+ + LK L+L N+L+ + L +L + L NPW C C I Y++ W+
Sbjct: 118 ---GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 174
Query: 359 RANRRKVWDS 368
+ V +S
Sbjct: 175 NKHSGVVRNS 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 9/186 (4%)
Query: 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
++C K+D+ LP D +P D ++ L N L T S +LT+L L + L++L
Sbjct: 15 VNCDKRDLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 86 -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
G L + L T+DLS N +++LP + LTV+ +S+N + SLP L L+
Sbjct: 73 DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
EL L N L ++ G + L++L L +N + +LP G+ + L+ LD L L+ N L I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 205 RPGLFN 210
G F
Sbjct: 188 PKGFFG 193
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 99/240 (41%), Gaps = 35/240 (14%)
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
+ +LP ++ D L LS+N+L + T L +L L + +L + L
Sbjct: 22 LTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTL 76
Query: 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY 248
L L L +N+L + P L LT L++S N ++SL L L+EL+L N
Sbjct: 77 PVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
++T+P G LEKL L +NN+ E L +
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTE------------------------LPAGLLNGL 171
Query: 309 LHLKKLQLDSNKLQYLATDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW 366
+L L L N L + LLP L NPW C+C ILY RWL+ N V+
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQDNAENVY 228
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 9/186 (4%)
Query: 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
++C K+D+ LP D +P D ++ L N L T S +LT+L L + L++L
Sbjct: 15 VNCDKRDLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 86 -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
G L + L T+DLS N +++LP + LTV+ +S+N + SLP L L+
Sbjct: 73 DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
EL L N L ++ G + L++L L +N + +LP G+ + L+ LD L L+ N L I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 205 RPGLFN 210
G F
Sbjct: 188 PKGFFG 193
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 99/240 (41%), Gaps = 35/240 (14%)
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
+ +LP ++ D L LS+N+L + T L +L L + +L + L
Sbjct: 22 LTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTL 76
Query: 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY 248
L L L +N+L + P L LT L++S N ++SL L L+EL+L N
Sbjct: 77 PVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
++T+P G LEKL L +N++ EL +
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNDLTEL------------------------PAGLLNGL 171
Query: 309 LHLKKLQLDSNKLQYLATDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW 366
+L L L N L + LLP L NPW C+C ILY RWL+ N V+
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQDNAENVY 228
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/381 (25%), Positives = 155/381 (40%), Gaps = 78/381 (20%)
Query: 49 VIDLGINQLSTLSKDAFTGLYKLTELKLRKNHL--SELPGKLFISTINLSTMDLSQNLIK 106
++ L NQ L AF GL L L L + +L + L G F +L + L N IK
Sbjct: 83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142
Query: 107 TL-PSTFFKGAIRLTVVQLSYNAIES------------------LPANVFHDL------- 140
+ P++FF R V+ L++N ++S L + D+
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202
Query: 141 ---------ISLEELDLSQNVLTSIQYGTFSGMYSLKRLK--LQSNRINQLPPGIFDDLK 189
S+ LDLS N F + +++ + SN N + K
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262
Query: 190 YLDFLSLRNNRLSFIRP-------------GLFNYFKHLTFLELSENWISSLNGDEFSQL 236
D + + S ++ +F++F L L L++N I+ ++ + F L
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322
Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXX 296
T L +L+L QN++ +I + F NL LE L L N+I
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI----------------------- 359
Query: 297 XRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMA 355
R L ++F + +LK+L LD+N+L+ + L +L + L NPW C C I Y++
Sbjct: 360 -RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 418
Query: 356 RWLRANRRKVWDSKPTCRGPG 376
RWL N +K S C G G
Sbjct: 419 RWLNKNSQKEQGS-AKCSGSG 438
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 75/144 (52%)
Query: 32 QDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIS 91
+D + F + ++ DL +++ L K F+ L +L L +N ++++ F
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321
Query: 92 TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN 151
+L ++LSQN + ++ S F+ +L V+ LSYN I +L F L +L+EL L N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 152 VLTSIQYGTFSGMYSLKRLKLQSN 175
L S+ G F + SL+++ L +N
Sbjct: 382 QLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Query: 85 PGKLFISTINLSTMDLSQNL--IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLIS 142
PG S I + + +++ L + LP+ + V LS N+I L F L
Sbjct: 3 PGTSECSVIGYNAICINRGLHQVPELPA-------HVNYVDLSLNSIAELNETSFSRLQD 55
Query: 143 LEELDLSQNVLT-SIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
L+ L + Q I+ TF G+ SL LKL N+ QL G F+ L L+ L+L L
Sbjct: 56 LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL 115
Query: 202 SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI-PAGSFANL 260
+ L+G+ F LTSL+ L L N I+ I PA F N+
Sbjct: 116 DG----------------------AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153
Query: 261 QSLEKLFLYSNNIQEL 276
+ L L N ++ +
Sbjct: 154 RRFHVLDLTFNKVKSI 169
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 9/185 (4%)
Query: 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
++C K+++ LP D +P D ++ L N L T S +LT+L L + L++L
Sbjct: 15 VNCDKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 86 -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
G L + L T+DLS N +++LP + LTV+ +S+N + SLP L L+
Sbjct: 73 DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
EL L N L ++ G + L++L L +N + +LP G+ + L+ LD L L+ N L I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 205 RPGLF 209
G F
Sbjct: 188 PKGFF 192
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 99/240 (41%), Gaps = 35/240 (14%)
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
+ +LP ++ D L LS+N+L + T L +L L + +L + L
Sbjct: 22 LTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTL 76
Query: 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY 248
L L L +N+L + P L LT L++S N ++SL L L+EL+L N
Sbjct: 77 PVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
++T+P G LEKL L +NN+ E L +
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTE------------------------LPAGLLNGL 171
Query: 309 LHLKKLQLDSNKLQYLATDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW 366
+L L L N L + LLP L NPW C+C ILY RWL+ N V+
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQDNAENVY 228
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 9/185 (4%)
Query: 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
++C K+++ LP D +P D ++ L N L T S +LT+L L + L++L
Sbjct: 15 VNCDKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 86 -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
G L + L T+DLS N +++LP + LTV+ +S+N + SLP L L+
Sbjct: 73 DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
EL L N L ++ G + L++L L +N + +LP G+ + L+ LD L L+ N L I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 205 RPGLF 209
G F
Sbjct: 188 PKGFF 192
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 99/240 (41%), Gaps = 35/240 (14%)
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
+ +LP ++ D L LS+N+L + T L +L L + +L + L
Sbjct: 22 LTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTL 76
Query: 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY 248
L L L +N+L + P L LT L++S N ++SL L L+EL+L N
Sbjct: 77 PVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
++T+P G LEKL L +NN+ E L +
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTE------------------------LPAGLLNGL 171
Query: 309 LHLKKLQLDSNKLQYLATDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW 366
+L L L N L + LLP L NPW C+C ILY RWL+ N V+
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQDNAENVY 228
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 9/185 (4%)
Query: 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
++C K+++ LP D +P D ++ L N L T S +LT+L L + L++L
Sbjct: 16 VNCDKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 73
Query: 86 -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
G L + L T+DLS N +++LP + LTV+ +S+N + SLP L L+
Sbjct: 74 DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 128
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
EL L N L ++ G + L++L L +N + +LP G+ + L+ LD L L+ N L I
Sbjct: 129 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 188
Query: 205 RPGLF 209
G F
Sbjct: 189 PKGFF 193
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 99/240 (41%), Gaps = 35/240 (14%)
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
+ +LP ++ D L LS+N+L + T L +L L + +L + L
Sbjct: 23 LTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTL 77
Query: 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY 248
L L L +N+L + P L LT L++S N ++SL L L+EL+L N
Sbjct: 78 PVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 136
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
++T+P G LEKL L +NN+ E L +
Sbjct: 137 LKTLPPGLLTPTPKLEKLSLANNNLTE------------------------LPAGLLNGL 172
Query: 309 LHLKKLQLDSNKLQYLATDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW 366
+L L L N L + LLP L NPW C+C ILY RWL+ N V+
Sbjct: 173 ENLDTLLLQENSLYTIPKGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQDNAENVY 229
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 9/185 (4%)
Query: 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
++C K+++ LP D +P D ++ L N L T S +LT+L L + L++L
Sbjct: 15 VNCDKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 86 -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
G L + L T+DLS N +++LP + LTV+ +S+N + SLP L L+
Sbjct: 73 DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
EL L N L ++ G + L++L L +N + +LP G+ + L+ LD L L+ N L I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 205 RPGLF 209
G F
Sbjct: 188 PKGFF 192
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 99/240 (41%), Gaps = 35/240 (14%)
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
+ +LP ++ D L LS+N+L + T L +L L + +L + L
Sbjct: 22 LTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTL 76
Query: 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY 248
L L L +N+L + P L LT L++S N ++SL L L+EL+L N
Sbjct: 77 PVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
++T+P G LEKL L +NN+ E L +
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTE------------------------LPAGLLNGL 171
Query: 309 LHLKKLQLDSNKLQYLATDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW 366
+L L L N L + LLP L NPW C+C ILY RWL+ N V+
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQDNAENVY 228
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 9/186 (4%)
Query: 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
++C K+ + LP D +P D ++ L N L T S +LT+L L + L++L
Sbjct: 15 VNCDKRQLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 86 -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
G L + L T+DLS N +++LP + LTV+ +S+N + SLP L L+
Sbjct: 73 DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
EL L N L ++ G + L++L L +N++ +LP G+ + L+ LD L L+ N L I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 205 RPGLFN 210
G F
Sbjct: 188 PKGFFG 193
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 91/223 (40%), Gaps = 32/223 (14%)
Query: 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR 205
L LS+N+L + T L +L L + +L + L L L L +N+L +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL- 92
Query: 206 PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEK 265
P L LT L++S N ++SL L L+EL+L N ++T+P G LEK
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 266 LFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLA 325
L L +N + EL + +L L L N L +
Sbjct: 153 LSLANNQLTEL------------------------PAGLLNGLENLDTLLLQENSLYTIP 188
Query: 326 TDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW 366
LLP L NPW C+C ILY RWL+ N V+
Sbjct: 189 KGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQDNAENVY 228
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 9/186 (4%)
Query: 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
++C K+ + LP D +P D ++ L N L T S +LT+L L + L++L
Sbjct: 15 VNCDKRQLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 86 -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
G L + L T+DLS N +++LP + LTV+ +S+N + SLP L L+
Sbjct: 73 DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
EL L N L ++ G + L++L L +N++ +LP G+ + L+ LD L L+ N L I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 205 RPGLFN 210
G F
Sbjct: 188 PKGFFG 193
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 91/223 (40%), Gaps = 32/223 (14%)
Query: 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR 205
L LS+N+L + T L +L L + +L + L L L L +N+L +
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL- 92
Query: 206 PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEK 265
P L LT L++S N ++SL L L+EL+L N ++T+P G LEK
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 266 LFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLA 325
L L +N + EL + +L L L N L +
Sbjct: 153 LSLANNQLTEL------------------------PAGLLNGLENLDTLLLQENSLYTIP 188
Query: 326 TDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW 366
LLP L NPW C+C ILY RWL+ N V+
Sbjct: 189 KGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQDNAENVY 228
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 9/186 (4%)
Query: 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
++C K+ + LP D +P D ++ L N L T S +LT+L L + L++L
Sbjct: 15 VNCDKRQLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 86 -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
G L + L T+DLS N +++LP + LTV+ +S+N + SLP L L+
Sbjct: 73 DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
EL L N L ++ G + L++L L +N++ +LP G+ + L+ LD L L+ N L I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 205 RPGLFN 210
G F
Sbjct: 188 PKGFFG 193
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 99/247 (40%), Gaps = 35/247 (14%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
V + +LP ++ D L LS+N+L + T L +L L + +L
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELTKL- 70
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE 241
+ L L L L +N+L + P L LT L++S N ++SL L L+E
Sbjct: 71 -QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 242 LHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLD 301
L+L N ++T+P G LEKL L +N + EL
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL------------------------P 164
Query: 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLR 359
+ +L L L N L + LLP L NPW C+C ILY RWL+
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQ 221
Query: 360 ANRRKVW 366
N V+
Sbjct: 222 DNAENVY 228
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 9/186 (4%)
Query: 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
++C K+ + LP D +P D ++ L N L T S +LT+L L + L++L
Sbjct: 15 VNCDKRQLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 86 -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
G L + L T+DLS N +++LP + LTV+ +S+N + SLP L L+
Sbjct: 73 DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
EL L N L ++ G + L++L L +N++ +LP G+ + L+ LD L L+ N L I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 205 RPGLFN 210
G F
Sbjct: 188 PKGFFG 193
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 99/247 (40%), Gaps = 35/247 (14%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
V + +LP ++ D L LS+N+L + T L +L L + +L
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELTKL- 70
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE 241
+ L L L L +N+L + P L LT L++S N ++SL L L+E
Sbjct: 71 -QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 242 LHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLD 301
L+L N ++T+P G LEKL L +N + EL
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL------------------------P 164
Query: 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLR 359
+ +L L L N L + LLP L NPW C+C ILY RWL+
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQ 221
Query: 360 ANRRKVW 366
N V+
Sbjct: 222 DNAENVY 228
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 15/267 (5%)
Query: 120 TVVQLSYNAIE----SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
V ++Y +E +P N+ S + LDLS N L + +F L+ L L
Sbjct: 8 VVPNITYQCMELNFYKIPDNL---PFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRC 64
Query: 176 RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQ 235
I + G + L +L L L N + + G F+ L L E ++SL
Sbjct: 65 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 124
Query: 236 LTSLKELHLGQNYIETIPAGS-FANLQSLEKLFLYSNNIQELHXX----XXXXXXXXXXX 290
L +LKEL++ N I++ F+NL +LE L L SN IQ ++
Sbjct: 125 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 184
Query: 291 XXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA 350
++ AF+ + LK+L LD+N+L+ + L +L + L NPW C C
Sbjct: 185 DLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
Query: 351 -ILYMARWLRANRRKVWDSKPTCRGPG 376
I Y++RWL N +K S C G G
Sbjct: 244 RIDYLSRWLNKNSQKEQGSA-KCSGSG 269
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 36/231 (15%)
Query: 69 YKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNA 128
Y+ EL K +P L ST NL DLS N ++ L S F L V+ LS
Sbjct: 14 YQCMELNFYK-----IPDNLPFSTKNL---DLSWNPLRHLGSYSFFSFPELQVLDLSRCE 65
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
I+++ + L L L L+ N + S+ G FSG+ SL++L + L L
Sbjct: 66 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 125
Query: 189 KYLDFLSLRNNRL-SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQL----------- 236
K L L++ +N + SF P F+ +L L+LS N I S+ + L
Sbjct: 126 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 185
Query: 237 ----------------TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
LKEL L N ++++P G F L SL+K++L++N
Sbjct: 186 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 236
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 15/267 (5%)
Query: 120 TVVQLSYNAIE----SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
V ++Y +E +P N+ S + LDLS N L + +F L+ L L
Sbjct: 7 VVPNITYQCMELNFYKIPDNL---PFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRC 63
Query: 176 RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQ 235
I + G + L +L L L N + + G F+ L L E ++SL
Sbjct: 64 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 123
Query: 236 LTSLKELHLGQNYIETIPAGS-FANLQSLEKLFLYSNNIQELHXX----XXXXXXXXXXX 290
L +LKEL++ N I++ F+NL +LE L L SN IQ ++
Sbjct: 124 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 183
Query: 291 XXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA 350
++ AF+ + LK+L LD+N+L+ + L +L + L NPW C C
Sbjct: 184 DLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
Query: 351 -ILYMARWLRANRRKVWDSKPTCRGPG 376
I Y++RWL N +K S C G G
Sbjct: 243 RIDYLSRWLNKNSQKEQGSA-KCSGSG 268
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 36/231 (15%)
Query: 69 YKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNA 128
Y+ EL K +P L ST NL DLS N ++ L S F L V+ LS
Sbjct: 13 YQCMELNFYK-----IPDNLPFSTKNL---DLSWNPLRHLGSYSFFSFPELQVLDLSRCE 64
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
I+++ + L L L L+ N + S+ G FSG+ SL++L + L L
Sbjct: 65 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 124
Query: 189 KYLDFLSLRNNRL-SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQL----------- 236
K L L++ +N + SF P F+ +L L+LS N I S+ + L
Sbjct: 125 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 184
Query: 237 ----------------TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
LKEL L N ++++P G F L SL+K++L++N
Sbjct: 185 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 235
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 123/255 (48%), Gaps = 12/255 (4%)
Query: 24 IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSE 83
+ + C ++ +P +I P D ++DL N +S L KD F GL L L L N +S+
Sbjct: 35 LRVVQCSDLGLKAVP-KEISP-DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 84 LPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISL 143
+ K F L + +S+N + +P + L ++ N I +P VF L ++
Sbjct: 93 IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVEL---RIHDNRIRKVPKGVFSGLRNM 149
Query: 144 EELDLSQNVL--TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
+++ N L + + G F G+ L L++ ++ +P D + L+ L L +N++
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK---DLPETLNELHLDHNKI 205
Query: 202 SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ 261
I + L L L N I + S L +L+ELHL N + +PAG +L+
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLK 264
Query: 262 SLEKLFLYSNNIQEL 276
L+ ++L++NNI ++
Sbjct: 265 LLQVVYLHTNNITKV 279
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 15/267 (5%)
Query: 120 TVVQLSYNAIE----SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
V ++Y +E +P N+ S + LDLS N L + +F L+ L L
Sbjct: 6 VVPNITYQCMELNFYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62
Query: 176 RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQ 235
I + G + L +L L L N + + G F+ L L E ++SL
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 236 LTSLKELHLGQNYIETIPAGS-FANLQSLEKLFLYSNNIQELHXX----XXXXXXXXXXX 290
L +LKEL++ N I++ F+NL +LE L L SN IQ ++
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 291 XXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA 350
++ AF+ + LK+L LD+N+L+ + L +L + L NPW C C
Sbjct: 183 DLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241
Query: 351 -ILYMARWLRANRRKVWDSKPTCRGPG 376
I Y++RWL N +K S C G G
Sbjct: 242 RIDYLSRWLNKNSQKEQGSA-KCSGSG 267
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 36/231 (15%)
Query: 69 YKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNA 128
Y+ EL K +P L ST NL DLS N ++ L S F L V+ LS
Sbjct: 12 YQCMELNFYK-----IPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCE 63
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
I+++ + L L L L+ N + S+ G FSG+ SL++L + L L
Sbjct: 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 189 KYLDFLSLRNNRL-SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQL----------- 236
K L L++ +N + SF P F+ +L L+LS N I S+ + L
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183
Query: 237 ----------------TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
LKEL L N ++++P G F L SL+K++L++N
Sbjct: 184 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 106/241 (43%), Gaps = 8/241 (3%)
Query: 142 SLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
S + LDLS N L + +F L+ L L I + G + L +L L L N +
Sbjct: 30 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 89
Query: 202 SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS-FANL 260
+ G F+ L L E ++SL L +LKEL++ N I++ F+NL
Sbjct: 90 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 149
Query: 261 QSLEKLFLYSNNIQELHXX----XXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQL 316
+LE L L SN IQ ++ ++ AF+ + LK+L L
Sbjct: 150 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELAL 208
Query: 317 DSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGP 375
D+N+L+ + L +L + L NPW C C I Y++RWL N +K S C G
Sbjct: 209 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGS 267
Query: 376 G 376
G
Sbjct: 268 G 268
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 36/231 (15%)
Query: 69 YKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNA 128
Y+ EL K +P L ST NL DLS N ++ L S F L V+ LS
Sbjct: 13 YQCEELNFYK-----IPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCE 64
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
I+++ + L L L L+ N + S+ G FSG+ SL++L + L L
Sbjct: 65 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 124
Query: 189 KYLDFLSLRNNRL-SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQL----------- 236
K L L++ +N + SF P F+ +L L+LS N I S+ + L
Sbjct: 125 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 184
Query: 237 ----------------TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
LKEL L N ++++P G F L SL+K++L++N
Sbjct: 185 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 235
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 15/267 (5%)
Query: 120 TVVQLSYNAIE----SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
V ++Y +E +P N+ S + LDLS N L + +F L+ L L
Sbjct: 8 VVPNITYQCMELNFYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 64
Query: 176 RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQ 235
I + G + L +L L L N + + G F+ L L E ++SL
Sbjct: 65 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGH 124
Query: 236 LTSLKELHLGQNYIETIPAGS-FANLQSLEKLFLYSNNIQELHXX----XXXXXXXXXXX 290
L +LKEL++ N I++ F+NL +LE L L SN IQ ++
Sbjct: 125 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 184
Query: 291 XXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA 350
++ AF+ + LK+L LD+N+L+ + L +L + L NPW C C
Sbjct: 185 DLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
Query: 351 -ILYMARWLRANRRKVWDSKPTCRGPG 376
I Y++RWL N +K S C G G
Sbjct: 244 RIDYLSRWLNKNSQKEQGSA-KCSGSG 269
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 102/231 (44%), Gaps = 36/231 (15%)
Query: 69 YKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNA 128
Y+ EL K +P L ST NL DLS N ++ L S F L V+ LS
Sbjct: 14 YQCMELNFYK-----IPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCE 65
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
I+++ + L L L L+ N + S+ G FSG+ SL++L + L L
Sbjct: 66 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHL 125
Query: 189 KYLDFLSLRNNRL-SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQL----------- 236
K L L++ +N + SF P F+ +L L+LS N I S+ + L
Sbjct: 126 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 185
Query: 237 ----------------TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
LKEL L N ++++P G F L SL+K++L++N
Sbjct: 186 LSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 236
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 33/204 (16%)
Query: 170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229
+ +S R +P GI + + L L +N+++ + PG+F+ +L L L N + +L
Sbjct: 24 VDCRSKRHASVPAGIPTNAQ---ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP 80
Query: 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXX 289
F LT L L LG N + +P+ F L L++LF+ N + EL
Sbjct: 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL------------- 127
Query: 290 XXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDC 349
+ E + HL L LD N+L+ + + L +L L NPW C+C
Sbjct: 128 ------------PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175
Query: 350 A-ILYMARWLRANRRKV---WDSK 369
I+Y+ W+ A+ + WD K
Sbjct: 176 RDIMYLRNWV-ADHTSIAMRWDGK 198
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 6/153 (3%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
T V S+PA + + + L L N +T ++ G F + +LK L L SN++
Sbjct: 22 TTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA 78
Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSL-NGDEFSQLTS 238
LP G+FD L L L L N+L+ + +F+ HL L + N ++ L G E +LT
Sbjct: 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIE--RLTH 136
Query: 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
L L L QN +++IP G+F L SL +L+ N
Sbjct: 137 LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 75/173 (43%), Gaps = 12/173 (6%)
Query: 26 TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
T+ C + +P IP + +++ L NQ++ L F L L EL L N L LP
Sbjct: 23 TVDCRSKRHASVPAG--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP 80
Query: 86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEE 145
+F S L+ +DL N + LPS F + L + + N + LP + L L
Sbjct: 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGI-ERLTHLTH 139
Query: 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRN 198
L L QN L SI +G F + SL L N D + D + LRN
Sbjct: 140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW---------DCECRDIMYLRN 183
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 66/152 (43%), Gaps = 4/152 (2%)
Query: 72 TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
T + R + +P + N + L N I L F I L + L N + +
Sbjct: 22 TTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA 78
Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYL 191
LP VF L L LDL N LT + F + LK L + N++ +LP GI + L +L
Sbjct: 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGI-ERLTHL 137
Query: 192 DFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
L+L N+L I G F+ LT L N
Sbjct: 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 120/282 (42%), Gaps = 39/282 (13%)
Query: 29 CWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL 88
C + ++P D +P +I V++L NQL L FT +LT L + N +S+L +L
Sbjct: 21 CSHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 78
Query: 89 FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
L ++L N + L F LT + L N+I+ + N F +L LDL
Sbjct: 79 CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 138
Query: 149 SQNVLTSIQYGT--------------------------FSGMYSLKRLKLQSNRINQLPP 182
S N L+S + GT SLK+L+L SN+I + P
Sbjct: 139 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 198
Query: 183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYF------KHLTFLELSENWISSLNGDEFSQL 236
G F + L L L N +L P L + L LS + +S+ + F L
Sbjct: 199 GCFHAIGRLFGLFLNNVQLG---PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 255
Query: 237 --TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
T+L L L N + + SFA L LE FL NNIQ L
Sbjct: 256 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 297
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 132/343 (38%), Gaps = 63/343 (18%)
Query: 57 LSTLSKDAFTGLYK--LTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI-KTLPSTFF 113
L TL+ + F L L L L KN +S++ F +L +DL N I + L +
Sbjct: 377 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 436
Query: 114 KGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGT--FSGMYSLKRLK 171
+G + + LSYN L N F + SL+ L L + L ++ F + +L L
Sbjct: 437 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 496
Query: 172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI----RPGLFNYF----KHLTFLELSEN 223
L +N I + + + L+ L+ L L++N L+ + PG YF HL L L N
Sbjct: 497 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 556
Query: 224 WISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXX 283
+ + F L LK + LG N + T+PA F N SL+ L L N I
Sbjct: 557 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-------- 608
Query: 284 XXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
++ K F P NL L + N
Sbjct: 609 ----------------VEKKVFGPAFR-----------------------NLTELDMRFN 629
Query: 344 PWHCDC-AILYMARWLRANRRKVWD--SKPTCRGPGNLGGKSV 383
P+ C C +I + W+ + + S C P + G V
Sbjct: 630 PFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPV 672
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 20/229 (8%)
Query: 45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL 104
++ ++DL N L+ + D+F L +L L N++ L N+ ++L +
Sbjct: 258 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR-- 315
Query: 105 IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM 164
+F K +I L ++ + F L LE L++ N + I+ F+G+
Sbjct: 316 ------SFTKQSISLA-------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 362
Query: 165 YSLKRLKLQSN--RINQLPPGIFDDLKY--LDFLSLRNNRLSFIRPGLFNYFKHLTFLEL 220
+LK L L ++ + L F L + L L+L N++S I F++ HL L+L
Sbjct: 363 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 422
Query: 221 SENWIS-SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL 268
N I L G E+ L ++ E++L N + SFA + SL++L L
Sbjct: 423 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 471
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 26/145 (17%)
Query: 46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-----PGKLFISTINLSTMDL 100
++ ++DL N ++ ++ D GL KL L L+ N+L+ L PG
Sbjct: 491 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG------------- 537
Query: 101 SQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGT 160
P F KG L ++ L N + +P VF DL L+ +DL N L ++
Sbjct: 538 --------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 589
Query: 161 FSGMYSLKRLKLQSNRINQLPPGIF 185
F+ SLK L LQ N I + +F
Sbjct: 590 FNNQVSLKSLNLQKNLITSVEKKVF 614
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 15/208 (7%)
Query: 47 IRVIDLGINQLST-LSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
+ V+DLG+N++ L+ + GL + E+ L N +L F +L + L + +
Sbjct: 417 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 476
Query: 106 KTLPSTF--FKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGT--- 160
K + S+ F+ LT++ LS N I ++ ++ L LE LDL N L +
Sbjct: 477 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 536
Query: 161 -----FSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHL 215
G+ L L L+SN +++P +F DL L + L N L+ + +FN L
Sbjct: 537 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 596
Query: 216 TFLELSENWISSLN----GDEFSQLTSL 239
L L +N I+S+ G F LT L
Sbjct: 597 KSLNLQKNLITSVEKKVFGPAFRNLTEL 624
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
+ +++L N + + F L++L + L N+L+ LP +F + ++L +++L +NLI
Sbjct: 548 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 607
Query: 107 TLPSTFFKGAIR-LTVVQLSYNAIE 130
++ F A R LT + + +N +
Sbjct: 608 SVEKKVFGPAFRNLTELDMRFNPFD 632
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 42/107 (39%)
Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXX 296
T++ L+L N + +PA +F L L + N I +L
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 297 XRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
L K F +L +L L SN +Q + + NLITL L+ N
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 141
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 120/282 (42%), Gaps = 39/282 (13%)
Query: 29 CWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL 88
C + ++P D +P +I V++L NQL L FT +LT L + N +S+L +L
Sbjct: 11 CSHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 68
Query: 89 FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
L ++L N + L F LT + L N+I+ + N F +L LDL
Sbjct: 69 CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128
Query: 149 SQNVLTSIQYGT--------------------------FSGMYSLKRLKLQSNRINQLPP 182
S N L+S + GT SLK+L+L SN+I + P
Sbjct: 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188
Query: 183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYF------KHLTFLELSENWISSLNGDEFSQL 236
G F + L L L N +L P L + L LS + +S+ + F L
Sbjct: 189 GCFHAIGRLFGLFLNNVQLG---PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245
Query: 237 --TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
T+L L L N + + SFA L LE FL NNIQ L
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 132/343 (38%), Gaps = 63/343 (18%)
Query: 57 LSTLSKDAFTGLYK--LTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI-KTLPSTFF 113
L TL+ + F L L L L KN +S++ F +L +DL N I + L +
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426
Query: 114 KGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGT--FSGMYSLKRLK 171
+G + + LSYN L N F + SL+ L L + L ++ F + +L L
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486
Query: 172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI----RPGLFNYF----KHLTFLELSEN 223
L +N I + + + L+ L+ L L++N L+ + PG YF HL L L N
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546
Query: 224 WISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXX 283
+ + F L LK + LG N + T+PA F N SL+ L L N I
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-------- 598
Query: 284 XXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
++ K F P NL L + N
Sbjct: 599 ----------------VEKKVFGPAFR-----------------------NLTELDMRFN 619
Query: 344 PWHCDC-AILYMARWLRANRRKVWD--SKPTCRGPGNLGGKSV 383
P+ C C +I + W+ + + S C P + G V
Sbjct: 620 PFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPV 662
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 20/229 (8%)
Query: 45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL 104
++ ++DL N L+ + D+F L +L L N++ L N+ ++L +
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR-- 305
Query: 105 IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM 164
+F K +I L ++ + F L LE L++ N + I+ F+G+
Sbjct: 306 ------SFTKQSISLA-------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352
Query: 165 YSLKRLKLQSN--RINQLPPGIFDDLKY--LDFLSLRNNRLSFIRPGLFNYFKHLTFLEL 220
+LK L L ++ + L F L + L L+L N++S I F++ HL L+L
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 412
Query: 221 SENWIS-SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL 268
N I L G E+ L ++ E++L N + SFA + SL++L L
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 26/145 (17%)
Query: 46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-----PGKLFISTINLSTMDL 100
++ ++DL N ++ ++ D GL KL L L+ N+L+ L PG
Sbjct: 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG------------- 527
Query: 101 SQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGT 160
P F KG L ++ L N + +P VF DL L+ +DL N L ++
Sbjct: 528 --------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579
Query: 161 FSGMYSLKRLKLQSNRINQLPPGIF 185
F+ SLK L LQ N I + +F
Sbjct: 580 FNNQVSLKSLNLQKNLITSVEKKVF 604
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 15/208 (7%)
Query: 47 IRVIDLGINQLST-LSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
+ V+DLG+N++ L+ + GL + E+ L N +L F +L + L + +
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466
Query: 106 KTLPSTF--FKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGT--- 160
K + S+ F+ LT++ LS N I ++ ++ L LE LDL N L +
Sbjct: 467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526
Query: 161 -----FSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHL 215
G+ L L L+SN +++P +F DL L + L N L+ + +FN L
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586
Query: 216 TFLELSENWISSLN----GDEFSQLTSL 239
L L +N I+S+ G F LT L
Sbjct: 587 KSLNLQKNLITSVEKKVFGPAFRNLTEL 614
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
+ +++L N + + F L++L + L N+L+ LP +F + ++L +++L +NLI
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597
Query: 107 TLPSTFFKGAIR-LTVVQLSYNAIE 130
++ F A R LT + + +N +
Sbjct: 598 SVEKKVFGPAFRNLTELDMRFNPFD 622
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 42/107 (39%)
Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXX 296
T++ L+L N + +PA +F L L + N I +L
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 297 XRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
L K F +L +L L SN +Q + + NLITL L+ N
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 120/282 (42%), Gaps = 39/282 (13%)
Query: 29 CWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL 88
C + ++P D +P +I V++L NQL L FT +LT L + N +S+L +L
Sbjct: 16 CSHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 73
Query: 89 FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
L ++L N + L F LT + L N+I+ + N F +L LDL
Sbjct: 74 CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 133
Query: 149 SQNVLTSIQYGT--------------------------FSGMYSLKRLKLQSNRINQLPP 182
S N L+S + GT SLK+L+L SN+I + P
Sbjct: 134 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 193
Query: 183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYF------KHLTFLELSENWISSLNGDEFSQL 236
G F + L L L N +L P L + L LS + +S+ + F L
Sbjct: 194 GCFHAIGRLFGLFLNNVQLG---PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 250
Query: 237 --TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
T+L L L N + + SFA L LE FL NNIQ L
Sbjct: 251 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 292
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 132/343 (38%), Gaps = 63/343 (18%)
Query: 57 LSTLSKDAFTGLYK--LTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI-KTLPSTFF 113
L TL+ + F L L L L KN +S++ F +L +DL N I + L +
Sbjct: 372 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 431
Query: 114 KGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGT--FSGMYSLKRLK 171
+G + + LSYN L N F + SL+ L L + L ++ F + +L L
Sbjct: 432 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 491
Query: 172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI----RPGLFNYF----KHLTFLELSEN 223
L +N I + + + L+ L+ L L++N L+ + PG YF HL L L N
Sbjct: 492 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 551
Query: 224 WISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXX 283
+ + F L LK + LG N + T+PA F N SL+ L L N I
Sbjct: 552 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-------- 603
Query: 284 XXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
++ K F P NL L + N
Sbjct: 604 ----------------VEKKVFGPAFR-----------------------NLTELDMRFN 624
Query: 344 PWHCDC-AILYMARWLRANRRKVWD--SKPTCRGPGNLGGKSV 383
P+ C C +I + W+ + + S C P + G V
Sbjct: 625 PFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPV 667
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 105/229 (45%), Gaps = 20/229 (8%)
Query: 45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL 104
++ ++DL N L+ + D+F L +L L N++ L N+ ++L +
Sbjct: 253 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR-- 310
Query: 105 IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM 164
+F K +I L ++ + F L LE L++ N + I+ F+G+
Sbjct: 311 ------SFTKQSISLA-------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 357
Query: 165 YSLKRLKLQSN--RINQLPPGIFDDLKY--LDFLSLRNNRLSFIRPGLFNYFKHLTFLEL 220
+LK L L ++ + L F L + L L+L N++S I F++ HL L+L
Sbjct: 358 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDL 417
Query: 221 SENWIS-SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL 268
N I L G E+ L ++ E++L N + SFA + SL++L L
Sbjct: 418 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 466
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 26/145 (17%)
Query: 46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-----PGKLFISTINLSTMDL 100
++ ++DL N ++ ++ D GL KL L L+ N+L+ L PG
Sbjct: 486 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG------------- 532
Query: 101 SQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGT 160
P F KG L ++ L N + +P VF DL L+ +DL N L ++
Sbjct: 533 --------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 584
Query: 161 FSGMYSLKRLKLQSNRINQLPPGIF 185
F+ SLK L LQ N I + +F
Sbjct: 585 FNNQVSLKSLNLQKNLITSVEKKVF 609
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 15/208 (7%)
Query: 47 IRVIDLGINQLST-LSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
+ V+DLG+N++ L+ + GL + E+ L N +L F +L + L + +
Sbjct: 412 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 471
Query: 106 KTLPSTF--FKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGT--- 160
K + S+ F+ LT++ LS N I ++ ++ L LE LDL N L +
Sbjct: 472 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 531
Query: 161 -----FSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHL 215
G+ L L L+SN +++P +F DL L + L N L+ + +FN L
Sbjct: 532 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 591
Query: 216 TFLELSENWISSLN----GDEFSQLTSL 239
L L +N I+S+ G F LT L
Sbjct: 592 KSLNLQKNLITSVEKKVFGPAFRNLTEL 619
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
+ +++L N + + F L++L + L N+L+ LP +F + ++L +++L +NLI
Sbjct: 543 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 602
Query: 107 TLPSTFFKGAIR-LTVVQLSYNAIE 130
++ F A R LT + + +N +
Sbjct: 603 SVEKKVFGPAFRNLTELDMRFNPFD 627
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 42/107 (39%)
Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXX 296
T++ L+L N + +PA +F L L + N I +L
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 297 XRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
L K F +L +L L SN +Q + + NLITL L+ N
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 2/174 (1%)
Query: 210 NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLY 269
N + +T + L +N I + FS L+ + L N I + +F L+SL L LY
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 270 SNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSL 329
N I EL L AF+ + +L L L NKLQ +A +
Sbjct: 89 GNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148
Query: 330 SLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSV 383
S L + T+ LA+NP+ CDC + ++A +L N + S C P L K +
Sbjct: 149 SPLRAIQTMHLAQNPFICDCHLKWLADYLHTN--PIETSGARCTSPRRLANKRI 200
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 121 VVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQL 180
+V + +P N+ ++ E+ L QN + I G FS L+R+ L +N+I++L
Sbjct: 15 IVDCRGKGLTEIPTNLPE---TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71
Query: 181 PPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLK 240
P F L+ L+ L L N+++ + LF L L L+ N I+ L D F L +L
Sbjct: 72 APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLN 131
Query: 241 ELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
L L N ++TI G+F+ L++++ + L N
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%)
Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
+T ++L N I+ +P F L +DLS N ++ + F G+ SL L L N+I
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
+LP +F+ L L L L N+++ +R F +L L L +N + ++ FS L +
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 239 LKELHLGQN 247
++ +HL QN
Sbjct: 154 IQTMHLAQN 162
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 74 LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP 133
+ R L+E+P L + ++ + L QN IK +P F +L + LS N I L
Sbjct: 16 VDCRGKGLTEIPTNLPET---ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 134 ANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF 193
+ F L SL L L N +T + F G++SL+ L L +N+IN L F DL L+
Sbjct: 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNL 132
Query: 194 LSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
LSL +N+L I G F+ + + + L++N
Sbjct: 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 2/149 (1%)
Query: 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG 86
+ C + + E+P + +P I I L N + + AF+ KL + L N +SEL
Sbjct: 16 VDCRGKGLTEIPTN--LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP 73
Query: 87 KLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEEL 146
F +L+++ L N I LP + F+G L ++ L+ N I L + F DL +L L
Sbjct: 74 DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLL 133
Query: 147 DLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
L N L +I GTFS + +++ + L N
Sbjct: 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 2/174 (1%)
Query: 210 NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLY 269
N + +T + L +N I + FS L+ + L N I + +F L+SL L LY
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 270 SNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSL 329
N I EL L AF+ + +L L L NKLQ +A +
Sbjct: 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148
Query: 330 SLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSV 383
S L + T+ LA+NP+ CDC + ++A +L N + S C P L K +
Sbjct: 149 SPLRAIQTMHLAQNPFICDCHLKWLADYLHTN--PIETSGARCTSPRRLANKRI 200
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 121 VVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQL 180
+V + +P N+ ++ E+ L QN + I G FS L+R+ L +N+I++L
Sbjct: 15 IVDCRGKGLTEIPTNLPE---TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71
Query: 181 PPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLK 240
P F L+ L+ L L N+++ + LF L L L+ N I+ L D F L +L
Sbjct: 72 APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131
Query: 241 ELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
L L N ++TI G+F+ L++++ + L N
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%)
Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
+T ++L N I+ +P F L +DLS N ++ + F G+ SL L L N+I
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
+LP +F+ L L L L N+++ +R F +L L L +N + ++ FS L +
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 239 LKELHLGQN 247
++ +HL QN
Sbjct: 154 IQTMHLAQN 162
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 74 LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP 133
+ R L+E+P L + ++ + L QN IK +P F +L + LS N I L
Sbjct: 16 VDCRGKGLTEIPTNLPET---ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 134 ANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF 193
+ F L SL L L N +T + F G++SL+ L L +N+IN L F DL L+
Sbjct: 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132
Query: 194 LSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
LSL +N+L I G F+ + + + L++N
Sbjct: 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 2/149 (1%)
Query: 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG 86
+ C + + E+P + +P I I L N + + AF+ KL + L N +SEL
Sbjct: 16 VDCRGKGLTEIPTN--LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP 73
Query: 87 KLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEEL 146
F +L+++ L N I LP + F+G L ++ L+ N I L + F DL +L L
Sbjct: 74 DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133
Query: 147 DLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
L N L +I GTFS + +++ + L N
Sbjct: 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 122/282 (43%), Gaps = 39/282 (13%)
Query: 29 CWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL 88
C + +P D +P +I V++L NQL L FT +L L N +S+L +L
Sbjct: 11 CSHLKLTHIPDD--LPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPEL 68
Query: 89 FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
L ++L N + + F LT + L N+I + +N F + +L +LDL
Sbjct: 69 CQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDL 128
Query: 149 SQNVLTSIQYGT--------------------------FSGMYSLKRLKLQSNRINQLPP 182
S N L+S + GT F G SL++L L SN + + P
Sbjct: 129 SHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSP 188
Query: 183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYF------KHLTFLELSENWISSLNGDEFSQL 236
G F + L L L N +L+ P L + L L+ N + + + FS L
Sbjct: 189 GCFQTIGKLFALLLNNAQLN---PHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGL 245
Query: 237 --TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
T+L +L L N + + GSF+ L SL L L NNIQ L
Sbjct: 246 KWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRL 287
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 107/235 (45%), Gaps = 15/235 (6%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKN--HLSELPGKLFISTIN--LSTMDLSQ 102
+ +++ N + + + FTGL L L L K L L + F+S + L T++L++
Sbjct: 331 LEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTK 390
Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIES-LPANVFHDLISLEELDLSQNVLTSIQYGTF 161
N I + + F +L ++ L N IE L + L ++ E+ LS N + +F
Sbjct: 391 NHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSF 450
Query: 162 SGMYSLKRLKLQSNRINQ--LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLE 219
+ + SL+RL L+ + + P F L+ L L L NN ++ I L ++L L+
Sbjct: 451 ALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILD 510
Query: 220 LSEN-----WISSLNGDEFSQLTSLKELH---LGQNYIETIPAGSFANLQSLEKL 266
N W + G + L L LH L N ++ IP G F NL L+ +
Sbjct: 511 FQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSI 565
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 107/244 (43%), Gaps = 46/244 (18%)
Query: 35 EELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFISTI 93
EEL F + +R +DL N L S F + KL L L L+ L KL
Sbjct: 163 EELEF--LGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELS 220
Query: 94 NLSTMDLS---QNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQ 150
N S +LS L+ T STF ++ T +L +LDLS
Sbjct: 221 NTSIQNLSLANNQLLATSESTF--SGLKWT---------------------NLTQLDLSY 257
Query: 151 NVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGL-- 208
N L + G+FS + SL+ L L+ N I +L P F L L +LSL+ +F + +
Sbjct: 258 NNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR---AFTKQSVSL 314
Query: 209 ----------FNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY--IETIPAGS 256
F + K+L +L + +N I S + F+ L SLK L L + + ++T+ +
Sbjct: 315 ASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNET 374
Query: 257 FANL 260
F +L
Sbjct: 375 FVSL 378
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 13/199 (6%)
Query: 47 IRVIDLGINQLST-LSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
+R++DLG+N++ LS + GL + E+ L N +L F +L + L + +
Sbjct: 407 LRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVAL 466
Query: 106 KTL---PSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI------ 156
K + PS F + LT++ LS N I ++ ++ L +LE LD N L +
Sbjct: 467 KNVDISPSPF-RPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANP 525
Query: 157 --QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKH 214
G+ L L L+SN ++++P G+F +L L ++L N L+ + P +F+
Sbjct: 526 GGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTS 585
Query: 215 LTFLELSENWISSLNGDEF 233
L L L +N I+S+ D F
Sbjct: 586 LRSLNLQKNLITSVEKDVF 604
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 11/189 (5%)
Query: 46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS--ELPGKLFISTINLSTMDLSQN 103
+I I L N+ LS +F + L L LR+ L ++ F NL+ +DLS N
Sbjct: 431 NIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNN 490
Query: 104 LIKTLPSTFFKGAIRLTVVQLSYNAIESL--------PANVFHDLISLEELDLSQNVLTS 155
I + +G L ++ +N + L P N L L L+L N L
Sbjct: 491 NIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDE 550
Query: 156 IQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFN-YFKH 214
I G F ++ LK + L N +N+L P IFDD L L+L+ N ++ + +F F++
Sbjct: 551 IPVGVFKNLFELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVFGPPFQN 610
Query: 215 LTFLELSEN 223
L L++ N
Sbjct: 611 LNSLDMRFN 619
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 28/158 (17%)
Query: 33 DMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-----PGK 87
D+ PF + ++ ++DL N ++ +++D GL L L + N+L+ L PG
Sbjct: 470 DISPSPFRPL--RNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGG 527
Query: 88 LFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELD 147
P F KG L ++ L N ++ +P VF +L L+ ++
Sbjct: 528 ---------------------PVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSIN 566
Query: 148 LSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIF 185
L N L ++ F SL+ L LQ N I + +F
Sbjct: 567 LGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVF 604
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 13/201 (6%)
Query: 57 LSTLSKDAFTGLYK--LTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI-KTLPSTFF 113
L TL+ + F L L L L KNH+S++ F L +DL N I + L +
Sbjct: 367 LQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEW 426
Query: 114 KGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL--TSIQYGTFSGMYSLKRLK 171
+G + + LSYN L + F + SL+ L L + L I F + +L L
Sbjct: 427 RGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILD 486
Query: 172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI----RPG-LFNYFK---HLTFLELSEN 223
L +N I + + + L+ L+ L ++N L+ + PG N+ K HL L L N
Sbjct: 487 LSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESN 546
Query: 224 WISSLNGDEFSQLTSLKELHL 244
+ + F L LK ++L
Sbjct: 547 GLDEIPVGVFKNLFELKSINL 567
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 148/370 (40%), Gaps = 20/370 (5%)
Query: 32 QDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIS 91
+D+ F+ + + + I+L + +S + F L EL L HLSELP L
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL--- 297
Query: 92 TINLSTMD---LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE-SLPANVFHDLISLEELD 147
+ LST+ LS N + L LT + + N L +L +L ELD
Sbjct: 298 -VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356
Query: 148 LSQNVLTSIQYGTFS--GMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR 205
LS + + + + L+ L L N L F + L+ L L RL
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416
Query: 206 P-GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA---NLQ 261
F L L LS + + + F L +L+ L+L N+ P G+ +LQ
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF---PKGNIQKTNSLQ 473
Query: 262 SLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKK--LQLDSN 319
+L +L + + +L L + + E + HLK L L SN
Sbjct: 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASN 533
Query: 320 KLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPT-CRGPGNL 378
+ + L +L T+ L +NP C C+ +Y W + N +K+ D++ T C P L
Sbjct: 534 HISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLL 593
Query: 379 GGKSVEDMSF 388
G + D++
Sbjct: 594 RGVRLSDVTL 603
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/351 (23%), Positives = 139/351 (39%), Gaps = 64/351 (18%)
Query: 26 TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
T +C + E+P +P ++ N L T+ F+ L LT L L + + +
Sbjct: 16 TYNCENLGLNEIP--GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73
Query: 86 GKLFISTINLSTMDLSQNLIKTLPSTFFKG--AIR-LTVVQLSYNAIESLPANVFHDLIS 142
F S L T+ L+ N + + T G A++ L +Q ++I+ +P H+ +
Sbjct: 74 EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP---LHNQKT 130
Query: 143 LEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLS--LRNNR 200
LE L L N ++SI+ LK L Q+N I+ L L+ LS L N
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190
Query: 201 LSFIRPGLFN-----------------YFKHL-----------TFLELSENWISSLNGDE 232
++ I PG F+ FK L TF ++ + IS +
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250
Query: 233 FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXX 292
++ S++ ++L ++Y I + +F L++L L + ++ EL
Sbjct: 251 LCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL---------------- 293
Query: 293 XXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
+ LKKL L +NK + L S S P+L L + N
Sbjct: 294 ---------PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 100/396 (25%), Positives = 162/396 (40%), Gaps = 73/396 (18%)
Query: 39 FDQIIPVDIRVIDLGINQLSTLSKDAFTGLYK--LTELKLRKNHLSELPGKLFISTINLS 96
F I+ I G + + ++ F GL + + L L + L ++F + +L
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293
Query: 97 TMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI 156
++L+ N I + F G L V+ LSYN + L ++ F+ L + +DL +N + I
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 157 QYGTFSGMYSLKRLKLQSNR---INQLP--PGIF---DDLKYLDFLSLRNNRLSFIRPGL 208
Q TF + L+ L L+ N I+ +P P IF + L L ++L N + L
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413
Query: 209 FN----YF----KHLTFLELSENWISSLNGDEF-SQLTSLKELHLGQNYIE-----TIPA 254
N YF HL L L++N SS +GD+ S+ SL++L LG+N ++ +
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473
Query: 255 GSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKL 314
F L L+ L+L N + L F + L+ L
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNS------------------------LPPGVFSHLTALRGL 509
Query: 315 QLDSNKLQYLATDSLS-------------LLPN------LITLKLAKNPWHCDCAILYMA 355
L+SN+L L+ + L L PN L L + N + C+C +
Sbjct: 510 SLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFI 569
Query: 356 RWLRANRRKVWDSKPT----CRGPGNLGGKSVEDMS 387
WL N V + P C P + G S+ +S
Sbjct: 570 NWL--NHTNVTIAGPPADIYCVYPDSFSGVSLFSLS 603
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 121/307 (39%), Gaps = 77/307 (25%)
Query: 46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSE--LPGKLFISTINLSTMDLSQN 103
++R++DLG +++ L DAF GL+ L EL+L LS+ L F + L+ +DLS+N
Sbjct: 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133
Query: 104 LIKTL---PSTFFKGAIRLTVVQLSYNAI------------------ESLPANVFHDLIS 142
I++L PS F L + S N I SL AN + +S
Sbjct: 134 QIRSLYLHPS--FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191
Query: 143 --------------LEELDLSQNVLTSIQYGTFS----------------------GMY- 165
LE LD+S N T G FS G +
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251
Query: 166 ---------------SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFN 210
S++ L L + L +F+ LK L L+L N+++ I F
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311
Query: 211 YFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYS 270
+L L LS N + L F L + + L +N+I I +F L+ L+ L L
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371
Query: 271 NNIQELH 277
N + +H
Sbjct: 372 NALTTIH 378
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 124 LSYNAIESLPANVF-HDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPP 182
LS+N I ++ A+ F SQ +I F + +L+ L L S++I L P
Sbjct: 31 LSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90
Query: 183 GIFDDLKYLDFLSLRNNRLS--FIRPGLFNYFKHLTFLELSENWISSLN-GDEFSQLTSL 239
F L +L L L LS ++ G F K LT L+LS+N I SL F +L SL
Sbjct: 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150
Query: 240 KELHLGQNYI 249
K + N I
Sbjct: 151 KSIDFSSNQI 160
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 98/183 (53%), Gaps = 7/183 (3%)
Query: 94 NLSTMDLSQNLI--KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN 151
+L +DLS+N + K S G L + LS+N + ++ +N F L LE LD +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS 406
Query: 152 VLTSI-QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL--SFIRPGL 208
L + ++ F + +L L + GIF+ L L+ L + N +F+ P +
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDI 465
Query: 209 FNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL 268
F ++LTFL+LS+ + L+ F+ L+SL+ L++ N ++++P G F L SL+K++L
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525
Query: 269 YSN 271
++N
Sbjct: 526 HTN 528
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 104/254 (40%), Gaps = 33/254 (12%)
Query: 153 LTSIQYGTFSGMY--SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFN 210
L + ++G F + SLKRL SN+ + DL L+FL L N LSF +
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQS 368
Query: 211 YF--KHLTFLELSENWISSLNGD---------------------EFSQLTSLKEL-HLGQ 246
F L +L+LS N + +++ + EFS SL+ L +L
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 247 NYIETIPA--GSFANLQSLEKLFLYSNNIQE-LHXXXXXXXXXXXXXXXXXXXXRYLDTK 303
++ T A G F L SLE L + N+ QE L
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 304 AFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANR 362
AF + L+ L + SN+L+ + L +L + L NPW C C I Y++RWL N
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 548
Query: 363 RKVWDSKPTCRGPG 376
+K S C G G
Sbjct: 549 QKEQGSA-KCSGSG 561
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 81/176 (46%), Gaps = 15/176 (8%)
Query: 69 YKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNA 128
Y+ EL K +P L ST NL DLS N ++ L S F L V+ LS
Sbjct: 12 YQCMELNFYK-----IPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCE 63
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
I+++ + L L L L+ N + S+ G FSG+ SL++L + L L
Sbjct: 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 189 KYLDFLSLRNNRL-SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELH 243
K L L++ +N + SF P F+ +L L+LS N I S+ T L+ LH
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI------YCTDLRVLH 173
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 8/163 (4%)
Query: 120 TVVQLSYNAIE----SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
V ++Y +E +P N+ S + LDLS N L + +F L+ L L
Sbjct: 6 VVPNITYQCMELNFYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62
Query: 176 RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQ 235
I + G + L +L L L N + + G F+ L L E ++SL
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 236 LTSLKELHLGQNYIETIPAGS-FANLQSLEKLFLYSNNIQELH 277
L +LKEL++ N I++ F+NL +LE L L SN IQ ++
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 19/195 (9%)
Query: 26 TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
T C + + ++P + +P + +DL N L L +F +L L L + + +
Sbjct: 11 TYQCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Query: 86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAI---RLTVVQLSYNAIESLPANVFHDLIS 142
+ S +LST+ L+ N I++L F G +L V+ + ++E+ P L +
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG---HLKT 125
Query: 143 LEELDLSQNVLTSIQYGT-FSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR- 200
L+EL+++ N++ S + FS + +L+ L L SN+I + DL+ L + L N
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI---YCTDLRVLHQMPLLNLSL 182
Query: 201 ------LSFIRPGLF 209
++FI+PG F
Sbjct: 183 DLSLNPMNFIQPGAF 197
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 30/217 (13%)
Query: 176 RINQLPPGIFDDLKYLDFLSLRNNRLSFIRP-GLFNYFKHLTFLELSENWISSLNGDEFS 234
++N++P I +Y L L NN + + G+F L + S N I+ + F
Sbjct: 22 KLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE 78
Query: 235 QLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXX 294
+ + E+ L N +E + F L+SL+ L L SN I
Sbjct: 79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-------------------- 118
Query: 295 XXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYM 354
+ +F + ++ L L N++ +A + L +L TL L NP++C+C + ++
Sbjct: 119 ----CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWL 174
Query: 355 ARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL 391
WLR ++++ P C+ P L ++D++ D
Sbjct: 175 GEWLR--KKRIVTGNPRCQKPYFLKEIPIQDVAIQDF 209
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQY-GTFSGMYSLKRLKLQSNRIN 178
T V S + +P ++ EL L+ N T ++ G F + L+++ +N+I
Sbjct: 14 TTVDCSNQKLNKIPEHIPQ---YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT 70
Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
+ G F+ ++ + L +NRL ++ +F + L L L N I+ + D F L+S
Sbjct: 71 DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130
Query: 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
++ L L N I T+ G+F L SL L L +N
Sbjct: 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
Query: 96 STMDLSQNLIKTLPST-FFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLT 154
+ + L+ N L +T FK +L + S N I + F + E+ L+ N L
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 155 SIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKH 214
++Q+ F G+ SLK L L+SNRI + F L + LSL +N+++ + PG F+
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 215 LTFLELSEN 223
L+ L L N
Sbjct: 155 LSTLNLLAN 163
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
Query: 72 TELKLRKNHLSELPGK-LFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE 130
EL+L N + L +F L ++ S N I + F+GA + + L+ N +E
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 131 SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKY 190
++ +F L SL+ L L N +T + +F G+ S++ L L N+I + PG FD L
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 191 LDFLSLRNN 199
L L+L N
Sbjct: 155 LSTLNLLAN 163
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
+R I+ N+++ + + AF G + E+ L N L + K+F +L T+ L N I
Sbjct: 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ + F G + ++ L N I ++ F L SL L+L N Y + G +
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWL 178
Query: 167 LKRLKLQSNRINQLP 181
K+ + N Q P
Sbjct: 179 RKKRIVTGNPRCQKP 193
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 7/229 (3%)
Query: 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS--EL 84
+ C + + +P IP ++L N+L +L F L +LT+L L N LS
Sbjct: 12 IRCNSKGLTSVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69
Query: 85 PGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPA-NVFHDLISL 143
+ T +L +DLS N + T+ S F G +L + ++ ++ + +VF L +L
Sbjct: 70 CSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128
Query: 144 EELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ-LPPGIFDDLKYLDFLSLRNNRLS 202
LD+S G F+G+ SL+ LK+ N + P IF +L+ L FL L +L
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 203 FIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIET 251
+ P FN L L +S N SL+ + L SL+ L N+I T
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 132/318 (41%), Gaps = 34/318 (10%)
Query: 72 TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
TE++ L+ +P + S L +L N +++LP F +LT + LS N +
Sbjct: 10 TEIRCNSKGLTSVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66
Query: 132 LPANVFHDL--ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPP-GIFDDL 188
D SL+ LDLS N + ++ F G+ L+ L Q + + Q+ +F L
Sbjct: 67 KGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125
Query: 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN-WISSLNGDEFSQLTSLKELHLGQN 247
+ L +L + + G+FN L L+++ N + + D F++L +L L L Q
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185
Query: 248 YIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEP 307
+E + +F +L SL+ L + NN L DT ++
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSL------------------------DTFPYKC 221
Query: 308 MLHLKKLQLDSNKLQYLATDSLSLLPN-LITLKLAKNPWHCDCAILYMARWLRANRRKVW 366
+ L+ L N + L P+ L L L +N + C C +W++ R+ +
Sbjct: 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 281
Query: 367 D-SKPTCRGPGNLGGKSV 383
+ + C P + G V
Sbjct: 282 EVERMECATPSDKQGMPV 299
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 138/349 (39%), Gaps = 62/349 (17%)
Query: 49 VIDLGINQLSTLSKDAFTGLYKLTELKLRKNHL--SELPGKLFISTINLSTMDLSQNLIK 106
++ L NQ L AF GL L L L + +L + L G F +L + L N IK
Sbjct: 83 ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142
Query: 107 TL-PSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI--------- 156
+ P++FF R V+ L++N ++S+ DL++ + + L+SI
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICE---EDLLNFQGKHFTLLRLSSITLQDMNEYW 199
Query: 157 ----QYGTFSGMYSLKRLKLQSNRINQ-LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNY 211
+ G S+ L L N + + FD + SL I +N
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL-------ILSNSYNM 252
Query: 212 ---FKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL 268
F H F + L + + +K L ++ I + F++ LE+L L
Sbjct: 253 GSSFGHTNFKDPDNFTFKGL------EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306
Query: 269 YSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDS 328
N I ++ D AF + HLK+L LD+N+L+ +
Sbjct: 307 AQNEINKI------------------------DDNAFWGLTHLKELALDTNQLKSVPDGI 342
Query: 329 LSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGPG 376
L +L + L NPW C C I Y++RWL N +K S C G G
Sbjct: 343 FDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS-AKCSGSG 390
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Query: 85 PGKLFISTINLSTMDLSQNL--IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLIS 142
PG S I + + +++ L + LP+ + V LS N+I L F L
Sbjct: 3 PGTSECSVIGYNAICINRGLHQVPELPA-------HVNYVDLSLNSIAELNETSFSRLQD 55
Query: 143 LEELDLSQNVLT-SIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
L+ L + Q I+ TF G+ SL LKL N+ QL G F+ L L+ L+L L
Sbjct: 56 LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL 115
Query: 202 SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI-PAGSFANL 260
+ L+G+ F LTSL+ L L N I+ I PA F N+
Sbjct: 116 DG----------------------AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153
Query: 261 QSLEKLFLYSNNIQEL 276
+ L L N ++ +
Sbjct: 154 RRFHVLDLTFNKVKSI 169
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 94/204 (46%), Gaps = 15/204 (7%)
Query: 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKD-AFTGLYKLTELKLRKNHLSELP 85
LSC KQ + +P Q +P ++DL N LS L + T L L L L NHL+ +
Sbjct: 23 LSCSKQQLPNVP--QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80
Query: 86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEE 145
+ F+ NL +DLS N + TL F L V+ L N I + N F D+ L++
Sbjct: 81 SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140
Query: 146 LDLSQNVLTSIQYGTFSGMYSLKR---LKLQSNRINQLPPGIFDDLKYL-----DFLSLR 197
L LSQN ++ L + L L SN++ +LP DL+ L + L L
Sbjct: 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP---LTDLQKLPAWVKNGLYLH 197
Query: 198 NNRLSFIRPGLFNYFKHLTFLELS 221
NN L L+ F H + +LS
Sbjct: 198 NNPLE-CDCKLYQLFSHWQYRQLS 220
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 23/166 (13%)
Query: 188 LKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQN 247
L L L L +N L+FI F +L +L+LS N + +L+ FS L +L+ L L N
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Query: 248 YIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEP 307
+I + +F ++ L+KL+L N I K
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL---------------------IKDGNK 161
Query: 308 MLHLKKLQLDSNKLQYLATDSLSLLPNLIT--LKLAKNPWHCDCAI 351
+ L L L SNKL+ L L LP + L L NP CDC +
Sbjct: 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 9/173 (5%)
Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFS 162
N+ ++LPS + + L+ LS E P L +L L LS N L I F
Sbjct: 32 NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTR----LTNLHSLLLSHNHLNFISSEAFV 85
Query: 163 GMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSE 222
+ +L+ L L SN ++ L +F DL+ L+ L L NN + + F L L LS+
Sbjct: 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145
Query: 223 NWISSLNGD---EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNN 272
N IS + + ++L L L L N ++ +P L + K LY +N
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229
+ Q+ R+ +P GI D + L L NN+++ + PG+F++ +L L + N ++++
Sbjct: 17 VNCQNIRLASVPAGIPTDKQRL---WLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP 73
Query: 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
F +LT L +L L N++++IP G+F NL+SL ++LY+N
Sbjct: 74 TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
T+V + S+PA + D + L L+ N +T ++ G F + +L++L SN++
Sbjct: 15 TLVNCQNIRLASVPAGIPTDK---QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71
Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
+P G+FD L L L L +N L I G F+ K LT + L N
Sbjct: 72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 27/136 (19%)
Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXX 296
T + L L N I + G F +L +L++L+ SN + +
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-------------------- 72
Query: 297 XRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMA 355
T F+ + L +L L+ N L+ + + L +L + L NPW C+C I+Y+
Sbjct: 73 ----PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR 128
Query: 356 RWLRANRRKV--WDSK 369
W+ + V WD K
Sbjct: 129 NWVADHTSIVMRWDGK 144
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYG 159
L+ N I L F + L + + N + ++P VF L L +LDL+ N L SI G
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99
Query: 160 TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRN 198
F + SL + L +N D + D + LRN
Sbjct: 100 AFDNLKSLTHIYLYNNPW---------DCECRDIMYLRN 129
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 43 IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ 102
IP D + + L NQ++ L F L L +L N L+ +P +F L+ +DL+
Sbjct: 31 IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90
Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYN 127
N +K++P F LT + L N
Sbjct: 91 NHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 73 ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL 132
L L N +++L +F +NL + + N + +P+ F +LT + L+ N ++S+
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 133 PANVFHDLISLEELDLSQN 151
P F +L SL + L N
Sbjct: 97 PRGAFDNLKSLTHIYLYNN 115
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 121/294 (41%), Gaps = 43/294 (14%)
Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFS 162
N I+ LP F+ LTV+ L N + SLP +FH+ L L +S N L I+ TF
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162
Query: 163 GMYSLKRLKLQSNRINQ----LPPGIFD-DLKY-----------LDFLSLRNNRLSFIRP 206
SL+ L+L SNR+ L P +F ++ Y ++ L +N ++ +R
Sbjct: 163 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR- 221
Query: 207 GLFNYFKHLTFLELSEN------WISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL 260
G N LT L+L N W+ + G L E+ L N +E I F +
Sbjct: 222 GPVNV--ELTILKLQHNNLTDTAWLLNYPG--------LVEVDLSYNELEKIMYHPFVKM 271
Query: 261 QSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPML-HLKKLQLDSN 319
Q LE+L++ +N + L+ L + +P L+ L LD N
Sbjct: 272 QRLERLYISNNRLVALN---LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 328
Query: 320 KLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCR 373
+ T LS L L L+ N W C+ A + R V D+ C+
Sbjct: 329 S---IVTLKLSTHHTLKNLTLSHNDWDCNSL---RALFRNVARPAVDDADQHCK 376
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%)
Query: 121 VVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQL 180
+V + + LPA + +E L+L+ + I F+ +++++L + N I L
Sbjct: 49 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 108
Query: 181 PPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLK 240
PP +F ++ L L L N LS + G+F+ LT L +S N + + D F TSL+
Sbjct: 109 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168
Query: 241 ELHLGQNYIETI 252
L L N + +
Sbjct: 169 NLQLSSNRLTHV 180
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 33/229 (14%)
Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
K + +++ + +LP + D + ++ L+L + ++ I F Y + L + N I
Sbjct: 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 107
Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXX 287
L F + L L L +N + ++P G F N L L + +NN++
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER------------ 155
Query: 288 XXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHC 347
++ F+ L+ LQL SN+L ++ LSL+P+L ++ N
Sbjct: 156 ------------IEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL-S 199
Query: 348 DCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDLCEGQW 396
AI L A+ +S RGP N+ ++ + ++L + W
Sbjct: 200 TLAIPIAVEELDASH----NSINVVRGPVNV-ELTILKLQHNNLTDTAW 243
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 32/197 (16%)
Query: 61 SKDAFTGLYKLT-----ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKG 115
++D + G +T + + + + +LP L S + ++L+ I+ + + F
Sbjct: 32 TQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY 91
Query: 116 AIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
A + + + +NAI LP +VF ++ L L L +N L+S
Sbjct: 92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-------------------- 131
Query: 176 RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQ 235
LP GIF + L LS+ NN L I F L L+LS N ++ + + S
Sbjct: 132 ----LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSL 184
Query: 236 LTSLKELHLGQNYIETI 252
+ SL ++ N + T+
Sbjct: 185 IPSLFHANVSYNLLSTL 201
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 126/300 (42%), Gaps = 55/300 (18%)
Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFS 162
N I+ LP F+ LTV+ L N + SLP +FH+ L L +S N L I+ TF
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168
Query: 163 GMYSLKRLKLQSNRINQ----LPPGIFD-DLKY-----------LDFLSLRNNRLSFIRP 206
SL+ L+L SNR+ L P +F ++ Y ++ L +N ++ +R
Sbjct: 169 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR- 227
Query: 207 GLFNYFKHLTFLELSEN------WISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL 260
G N LT L+L N W+ + G L E+ L N +E I F +
Sbjct: 228 GPVNV--ELTILKLQHNNLTDTAWLLNYPG--------LVEVDLSYNELEKIMYHPFVKM 277
Query: 261 QSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNK 320
Q LE+L++ +N + L+ + LD + +LH+++ Q ++
Sbjct: 278 QRLERLYISNNRLVALN-----------LYGQPIPTLKVLDL-SHNHLLHVERNQPQFDR 325
Query: 321 LQYLATD-------SLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCR 373
L+ L D LS L L L+ N W C+ A + R V D+ C+
Sbjct: 326 LENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNS---LRALFRNVARPAVDDADQHCK 382
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%)
Query: 121 VVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQL 180
+V + + LPA + +E L+L+ + I F+ +++++L + N I L
Sbjct: 55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL 114
Query: 181 PPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLK 240
PP +F ++ L L L N LS + G+F+ LT L +S N + + D F TSL+
Sbjct: 115 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174
Query: 241 ELHLGQNYIETI 252
L L N + +
Sbjct: 175 NLQLSSNRLTHV 186
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 24/149 (16%)
Query: 81 LSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDL 140
+ +LP L S + ++L+ I+ + + F A + + + +NAI LP +VF ++
Sbjct: 63 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122
Query: 141 ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR 200
L L L +N L+S LP GIF + L LS+ NN
Sbjct: 123 PLLTVLVLERNDLSS------------------------LPRGIFHNTPKLTTLSMSNNN 158
Query: 201 LSFIRPGLFNYFKHLTFLELSENWISSLN 229
L I F L L+LS N ++ ++
Sbjct: 159 LERIEDDTFQATTSLQNLQLSSNRLTHVD 187
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 32/211 (15%)
Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
K + +++ + +LP + D + ++ L+L + ++ I F Y + L + N I
Sbjct: 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 113
Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXX 287
L F + L L L +N + ++P G F N L L + +NN++
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER------------ 161
Query: 288 XXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHC 347
++ F+ L+ LQL SN+L ++ LSL+P+L ++ N
Sbjct: 162 ------------IEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL-S 205
Query: 348 DCAILYMARWLRANRRKVWDSKPTCRGPGNL 378
AI L A+ +S RGP N+
Sbjct: 206 TLAIPIAVEELDAS----HNSINVVRGPVNV 232
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Query: 149 SQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGL 208
S N+ +I ++ LKR + + R+ +P + D++ L L LR N + + L
Sbjct: 107 SDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHL 165
Query: 209 FNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL 268
F+ ++L +E N + + F ++ LK+L+L N ++++P G F L SL+K++L
Sbjct: 166 FDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWL 225
Query: 269 YSN 271
++N
Sbjct: 226 HTN 228
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 29/149 (19%)
Query: 51 DLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPS 110
+LG+N +++ L+ L + L+ +P L NLS ++L N
Sbjct: 109 NLGMN----ITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN------- 157
Query: 111 TFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRL 170
IE +P+++F DL +LE ++ N L + G F M LK+L
Sbjct: 158 ------------------IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQL 199
Query: 171 KLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
L SN++ +P GIFD L L + L N
Sbjct: 200 NLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 3/162 (1%)
Query: 216 TFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE 275
T + S+N ++ +L LK + IPA ++++L L L +N I+E
Sbjct: 102 TLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEE 160
Query: 276 LHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
+ R + F M LK+L L SN+L+ + L +L
Sbjct: 161 MPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSL 220
Query: 336 ITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGPG 376
+ L NPW C C I Y++RWL N +K S C G G
Sbjct: 221 QKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGSG 261
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 84/311 (27%), Positives = 130/311 (41%), Gaps = 24/311 (7%)
Query: 81 LSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDL 140
L+ +P L T + ++DLS N I + ++ + + L + L+ N I ++ + F L
Sbjct: 43 LNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99
Query: 141 ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQL-PPGIFDDLKYLDFLSLRNN 199
SLE LDLS N L+++ F + SL L L N L +F L L L + N
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV-GN 158
Query: 200 RLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE-----LHLGQNYIETIPA 254
+F + + F LTFLE E S L E L S++ LH+ Q+ +
Sbjct: 159 MDTFTKIQRKD-FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI---LLL 214
Query: 255 GSFANL-QSLEKLFLYSNNIQELH-XXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLK 312
F ++ S+E L L ++ H + D F+ M L
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274
Query: 313 K------LQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKV 365
+ L+ N+L+ + L +L + L NPW C C I Y++RWL N +K
Sbjct: 275 QISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE 334
Query: 366 WDSKPTCRGPG 376
S C G G
Sbjct: 335 QGS-AKCSGSG 344
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 111/258 (43%), Gaps = 33/258 (12%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
++ +DL N+++ +S L L L N ++ + F S +L +DLS N +
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESL-PANVFHDLISLEELDLSQ-NVLTSIQYGTFSGM 164
L S++FK LT + L N ++L ++F L L+ L + + T IQ F+G+
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173
Query: 165 YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENW 224
L+ L++ ++ + P ++ + L L + + + + LEL +
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233
Query: 225 ISSLNGDEFS-------------------------------QLTSLKELHLGQNYIETIP 253
+ + + E S Q++ L EL +N ++++P
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP 293
Query: 254 AGSFANLQSLEKLFLYSN 271
G F L SL+K++L++N
Sbjct: 294 DGIFDRLTSLQKIWLHTN 311
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 5/167 (2%)
Query: 171 KLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNG 230
K S +N +P G+ + +K LD L NNR+++I +L L L+ N I+++
Sbjct: 37 KGSSGSLNSIPSGLTEAVKSLD---LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93
Query: 231 DEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXX 290
D FS L SL+ L L NY+ + + F L SL L L N + L
Sbjct: 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153
Query: 291 XXXXXXXRY--LDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
+ + K F + L++L++D++ LQ SL + N+
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%)
Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
L L +NR++ + PG+F+ LT L+L N ++ L F +LT L +L L N +++I
Sbjct: 34 VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 253 PAGSFANLQSLEKLFLYSN 271
P G+F NL+SL ++L +N
Sbjct: 94 PRGAFDNLRSLTHIWLLNN 112
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
T V S ++ S+P + + + L L N +T ++ G F + L RL L +N++
Sbjct: 12 TTVDCSGKSLASVPTGI---PTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
LP G+FD L L LSL +N+L I G F+ + LT + L N
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
+ ++P G Q L+LY N I +L L F+ +
Sbjct: 21 LASVPTGIPTTTQ---VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77
Query: 309 LHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWL 358
L +L L+ N+L+ + + L +L + L NPW C C+ ILY++RW+
Sbjct: 78 TQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYLSRWI 128
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 72 TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
T + L+ +P + +T L D N I L F +LT + L N +
Sbjct: 12 TTVDCSGKSLASVPTGIPTTTQVLYLYD---NRITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
LPA VF L L +L L+ N L SI G F + SL + L +N
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 66 TGLYKLTE-LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL 124
TG+ T+ L L N +++L +F L+ +DL N + LP+ F +LT + L
Sbjct: 26 TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85
Query: 125 SYNAIESLPANVFHDLISLEEL 146
+ N ++S+P F +L SL +
Sbjct: 86 NDNQLKSIPRGAFDNLRSLTHI 107
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 34 MEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLF 89
+E FD++ + +DL NQL+ L F L +LT+L L N L +P F
Sbjct: 45 LEPGVFDRL--TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 98
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 116/252 (46%), Gaps = 38/252 (15%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-PGKLFISTINLSTMDLSQNLIK 106
+++D+ +N L LT L L N ++++ P K + NL+ ++LS N I
Sbjct: 86 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTIS 142
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ + G L + S N + L +L +LE LD+S N ++ I + + +
Sbjct: 143 DISA--LSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV--LAKLTN 196
Query: 167 LKRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
L+ L +N+I+ + P GI L LD LSL N+L I G +LT L+L+ N I
Sbjct: 197 LESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 251
Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIP--AG------------------SFANLQSLEK 265
S+L S LT L EL LG N I I AG +NL++L
Sbjct: 252 SNL--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 309
Query: 266 LFLYSNNIQELH 277
L LY NNI ++
Sbjct: 310 LTLYFNNISDIS 321
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 22/230 (9%)
Query: 50 IDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLP 109
++L N +S +S A +GL L +L N +++L K + L +D+S N + +
Sbjct: 134 LELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSDI- 188
Query: 110 STFFKGAIRLTVVQLSYNAIESL-PANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK 168
+ L + + N I + P + L +L+EL L+ N L I GT + + +L
Sbjct: 189 -SVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLT 242
Query: 169 RLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSL 228
L L +N+I+ L P L L L L N++S I P LT LEL+EN + +
Sbjct: 243 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 298
Query: 229 NGDEFSQLTSLKELHLGQNYIETI-PAGSFANLQSLEKLFLYSNNIQELH 277
S L +L L L N I I P S LQ +LF Y+N + ++
Sbjct: 299 --SPISNLKNLTYLTLYFNNISDISPVSSLTKLQ---RLFFYNNKVSDVS 343
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 110/272 (40%), Gaps = 56/272 (20%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-PGKLFISTINLSTM-DLSQNLI 105
+V L ++L S D L LT++ N L+++ P K NL+ + D+ N
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLK------NLTKLVDILMNNN 95
Query: 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMY 165
+ T LT + L N I + + +L +L L+LS N ++ I SG+
Sbjct: 96 QIADITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLT 151
Query: 166 SLKRLKLQSNRINQLPP--------------------GIFDDLKYLDFLSLRNNRLSFIR 205
SL++L SN++ L P + L L+ L NN++S I
Sbjct: 152 SLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT 211
Query: 206 P--------------------GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLG 245
P G +LT L+L+ N IS+L S LT L EL LG
Sbjct: 212 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLG 269
Query: 246 QNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
N I I A L +L L L N ++++
Sbjct: 270 ANQISNI--SPLAGLTALTNLELNENQLEDIS 299
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 116/252 (46%), Gaps = 38/252 (15%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-PGKLFISTINLSTMDLSQNLIK 106
+++D+ +N L LT L L N ++++ P K + NL+ ++LS N I
Sbjct: 86 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTIS 142
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ + G L + S N + L +L +LE LD+S N ++ I + + +
Sbjct: 143 DISA--LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV--LAKLTN 196
Query: 167 LKRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
L+ L +N+I+ + P GI L LD LSL N+L I G +LT L+L+ N I
Sbjct: 197 LESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 251
Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIP--AG------------------SFANLQSLEK 265
S+L S LT L EL LG N I I AG +NL++L
Sbjct: 252 SNL--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 309
Query: 266 LFLYSNNIQELH 277
L LY NNI ++
Sbjct: 310 LTLYFNNISDIS 321
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 110/272 (40%), Gaps = 56/272 (20%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-PGKLFISTINLSTM-DLSQNLI 105
+V L ++L S D L LT++ N L+++ P K NL+ + D+ N
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLK------NLTKLVDILMNNN 95
Query: 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMY 165
+ T LT + L N I + + +L +L L+LS N ++ I SG+
Sbjct: 96 QIADITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISA--LSGLT 151
Query: 166 SLKRLKLQSNRINQLPP--------------------GIFDDLKYLDFLSLRNNRLSFIR 205
SL++L SN++ L P + L L+ L NN++S I
Sbjct: 152 SLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT 211
Query: 206 P--------------------GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLG 245
P G +LT L+L+ N IS+L S LT L EL LG
Sbjct: 212 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLG 269
Query: 246 QNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
N I I A L +L L L N ++++
Sbjct: 270 ANQISNI--SPLAGLTALTNLELNENQLEDIS 299
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 50 IDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTL- 108
+DL NQ+S L+ +GL KLTELKL N +S + ++ L+ ++L++N ++ +
Sbjct: 244 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA--LTNLELNENQLEDIS 299
Query: 109 PSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK 168
P + K LT + L +N I + L L+ L S N ++ + + + + ++
Sbjct: 300 PISNLK---NLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNIN 352
Query: 169 RLKLQSNRINQLPP 182
L N+I+ L P
Sbjct: 353 WLSAGHNQISDLTP 366
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 116/252 (46%), Gaps = 38/252 (15%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-PGKLFISTINLSTMDLSQNLIK 106
+++D+ +N L LT L L N ++++ P K + NL+ ++LS N I
Sbjct: 86 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTIS 142
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ + G L + S N + L +L +LE LD+S N ++ I + + +
Sbjct: 143 DISA--LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV--LAKLTN 196
Query: 167 LKRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
L+ L +N+I+ + P GI L LD LSL N+L I G +LT L+L+ N I
Sbjct: 197 LESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 251
Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIP--AG------------------SFANLQSLEK 265
S+L S LT L EL LG N I I AG +NL++L
Sbjct: 252 SNL--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 309
Query: 266 LFLYSNNIQELH 277
L LY NNI ++
Sbjct: 310 LTLYFNNISDIS 321
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 22/230 (9%)
Query: 50 IDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLP 109
++L N +S +S A +GL L +L N +++L K + L +D+S N + +
Sbjct: 134 LELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL--KPLANLTTLERLDISSNKVSDI- 188
Query: 110 STFFKGAIRLTVVQLSYNAIESL-PANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK 168
+ L + + N I + P + L +L+EL L+ N L I GT + + +L
Sbjct: 189 -SVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLT 242
Query: 169 RLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSL 228
L L +N+I+ L P L L L L N++S I P LT LEL+EN + +
Sbjct: 243 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 298
Query: 229 NGDEFSQLTSLKELHLGQNYIETI-PAGSFANLQSLEKLFLYSNNIQELH 277
+ S L +L L L N I I P S LQ +LF Y+N + ++
Sbjct: 299 S--PISNLKNLTYLTLYFNNISDISPVSSLTKLQ---RLFFYNNKVSDVS 343
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 110/272 (40%), Gaps = 56/272 (20%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-PGKLFISTINLSTM-DLSQNLI 105
+V L ++L S D L LT++ N L+++ P K NL+ + D+ N
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLK------NLTKLVDILMNNN 95
Query: 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMY 165
+ T LT + L N I + + +L +L L+LS N ++ I SG+
Sbjct: 96 QIADITPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLT 151
Query: 166 SLKRLKLQSNRINQLPP--------------------GIFDDLKYLDFLSLRNNRLSFIR 205
SL++L SN++ L P + L L+ L NN++S I
Sbjct: 152 SLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT 211
Query: 206 P--------------------GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLG 245
P G +LT L+L+ N IS+L S LT L EL LG
Sbjct: 212 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLG 269
Query: 246 QNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
N I I A L +L L L N ++++
Sbjct: 270 ANQISNI--SPLAGLTALTNLELNENQLEDIS 299
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229
+ Q + +P GI + L L N+++ + PG+F+ LT+L L+ N +++L
Sbjct: 24 VNCQERSLASVPAGIPTTTQ---VLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALP 80
Query: 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
F +LT L L L N +++IP G F NL+SL ++L++N
Sbjct: 81 VGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
T V ++ S+PA + + + L L N +T ++ G F + L L L N++
Sbjct: 22 TTVNCQERSLASVPAGI---PTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA 78
Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
LP G+FD L L L+L N+L I G+F+ K LT + L N
Sbjct: 79 LPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 26 TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
T++C ++ + +P IP +V+ L INQ++ L F L +LT L L N L+ LP
Sbjct: 23 TVNCQERSLASVPAG--IPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALP 80
Query: 86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN 127
+F L+ + L N +K++P F LT + L N
Sbjct: 81 VGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 72 TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
T + ++ L+ +P + +T + L N I L F +LT + L+ N + +
Sbjct: 22 TTVNCQERSLASVPAGIPTTT---QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA 78
Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
LP VF L L L L N L SI G F + SL + L +N
Sbjct: 79 LPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
+ ++PAG Q L LY N I +L L F+ +
Sbjct: 31 LASVPAGIPTTTQVLH---LYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKL 87
Query: 309 LHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWL 358
L L L N+L+ + L +L + L NPW C+C+ ILY+ W+
Sbjct: 88 TKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDILYLKNWI 138
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
L L +N+++ + PG+F+ LT L+L N ++ L F +LT L +L L N +++I
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 253 PAGSFANLQSLEKLFLYSN 271
P G+F NL+SL ++L +N
Sbjct: 94 PRGAFDNLKSLTHIWLLNN 112
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
T V S ++ S+P + + + L L N +T ++ G F + L RL L +N++
Sbjct: 12 TTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
LP G+FD L L LSL +N+L I G F+ K LT + L N
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 26 TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
T+ C + + +P IP +V+ L NQ++ L F L +LT L L N L+ LP
Sbjct: 13 TVDCSGKSLASVPTG--IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 70
Query: 86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFH 138
+F L+ + L+ N +K++P F LT + L N + +++ +
Sbjct: 71 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILY 123
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
+ ++P G Q L+LY N I +L L F+ +
Sbjct: 21 LASVPTGIPTTTQ---VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77
Query: 309 LHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWL 358
L +L L+ N+L+ + + L +L + L NPW C C+ ILY++RW+
Sbjct: 78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 128
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 72 TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
T + L+ +P + +T L D N I L F +LT + L N +
Sbjct: 12 TTVDCSGKSLASVPTGIPTTTQVLYLYD---NQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
LPA VF L L +L L+ N L SI G F + SL + L +N
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 66 TGLYKLTE-LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL 124
TG+ T+ L L N +++L +F L+ +DL N + LP+ F +LT + L
Sbjct: 26 TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85
Query: 125 SYNAIESLPANVFHDLISLEEL 146
+ N ++S+P F +L SL +
Sbjct: 86 NDNQLKSIPRGAFDNLKSLTHI 107
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
L L +N+++ + PG+F+ LT L+L N ++ L F +LT L +L L N +++I
Sbjct: 42 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 101
Query: 253 PAGSFANLQSLEKLFLYSN 271
P G+F NL+SL ++L +N
Sbjct: 102 PRGAFDNLKSLTHIWLLNN 120
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
T V S ++ S+P + + + L L N +T ++ G F + L RL L +N++
Sbjct: 20 TTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
LP G+FD L L LSL +N+L I G F+ K LT + L N
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 26 TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
T+ C + + +P IP +V+ L NQ++ L F L +LT L L N L+ LP
Sbjct: 21 TVDCSGKSLASVPTG--IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP 78
Query: 86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFH 138
+F L+ + L+ N +K++P F LT + L N + +++ +
Sbjct: 79 AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILY 131
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
+ ++P G Q L+LY N I +L L F+ +
Sbjct: 29 LASVPTGIPTTTQ---VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 85
Query: 309 LHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWL 358
L +L L+ N+L+ + + L +L + L NPW C C+ ILY++RW+
Sbjct: 86 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 136
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 72 TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
T + L+ +P + +T L D N I L F +LT + L N +
Sbjct: 20 TTVDCSGKSLASVPTGIPTTTQVLYLYD---NQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
LPA VF L L +L L+ N L SI G F + SL + L +N
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 66 TGLYKLTE-LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL 124
TG+ T+ L L N +++L +F L+ +DL N + LP+ F +LT + L
Sbjct: 34 TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 93
Query: 125 SYNAIESLPANVFHDLISLEEL 146
+ N ++S+P F +L SL +
Sbjct: 94 NDNQLKSIPRGAFDNLKSLTHI 115
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 3/164 (1%)
Query: 90 ISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPA-NVFHDLISLEELDL 148
TI+L +DLS N + T+ S F G +L + ++ ++ + +VF L +L LD+
Sbjct: 394 FGTISLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452
Query: 149 SQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ-LPPGIFDDLKYLDFLSLRNNRLSFIRPG 207
S G F+G+ SL+ LK+ N + P IF +L+ L FL L +L + P
Sbjct: 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 512
Query: 208 LFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIET 251
FN L L +S N SL+ + L SL+ L N+I T
Sbjct: 513 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 97/184 (52%), Gaps = 8/184 (4%)
Query: 45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG-KLFISTINLSTMDLSQN 103
+ ++ +DL N + T+S + F GL +L L + ++L ++ +F+S NL +D+S
Sbjct: 397 ISLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 455
Query: 104 LIKTLPSTFFKGAIRLTVVQLSYNAI-ESLPANVFHDLISLEELDLSQNVLTSIQYGTFS 162
+ + F G L V++++ N+ E+ ++F +L +L LDLSQ L + F+
Sbjct: 456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 515
Query: 163 GMYSLKRLKLQSNR---INQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLE 219
+ SL+ L + N ++ P + L+ LD+ SL N+ ++ + L ++ L FL
Sbjct: 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY-SL-NHIMTSKKQELQHFPSSLAFLN 573
Query: 220 LSEN 223
L++N
Sbjct: 574 LTQN 577
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 69 YKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNA 128
Y+ EL K +P L ST NL DLS N ++ L S F L V+ LS
Sbjct: 36 YQCMELNFYK-----IPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCE 87
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
I+++ + L L L L+ N + S+ G FSG+ SL++L + L L
Sbjct: 88 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 147
Query: 189 KYLDFLSLRNNRL-SFIRPGLFNYFKHLTFLELSENWISSL 228
K L L++ +N + SF P F+ +L L+LS N I S+
Sbjct: 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 8/163 (4%)
Query: 120 TVVQLSYNAIE----SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
V ++Y +E +P N+ S + LDLS N L + +F L+ L L
Sbjct: 30 VVPNITYQCMELNFYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 86
Query: 176 RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQ 235
I + G + L +L L L N + + G F+ L L E ++SL
Sbjct: 87 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 146
Query: 236 LTSLKELHLGQNYIETIPAGS-FANLQSLEKLFLYSNNIQELH 277
L +LKEL++ N I++ F+NL +LE L L SN IQ ++
Sbjct: 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 19/195 (9%)
Query: 26 TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
T C + + ++P + +P + +DL N L L +F +L L L + + +
Sbjct: 35 TYQCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 92
Query: 86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAI---RLTVVQLSYNAIESLPANVFHDLIS 142
+ S +LST+ L+ N I++L F G +L V+ + ++E+ P L +
Sbjct: 93 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG---HLKT 149
Query: 143 LEELDLSQNVLTSIQYGT-FSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR- 200
L+EL+++ N++ S + FS + +L+ L L SN+I + DL+ L + L N
Sbjct: 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI---YCTDLRVLHQMPLLNLSL 206
Query: 201 ------LSFIRPGLF 209
++FI+PG F
Sbjct: 207 DLSLNPMNFIQPGAF 221
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 114/284 (40%), Gaps = 55/284 (19%)
Query: 139 DLISLEELDLSQNVLT-------------SIQY------------GTFSGMYSLKRLKLQ 173
DL SLE LDLS+N L+ S++Y F G+ L+ L Q
Sbjct: 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 428
Query: 174 SNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN-WISSLNGD 231
+ + Q+ +F L+ L +L + + G+FN L L+++ N + + D
Sbjct: 429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 488
Query: 232 EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXX 291
F++L +L L L Q +E + +F +L SL+ L + NN
Sbjct: 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS---------------- 532
Query: 292 XXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLP-NLITLKLAKNPWHCDCA 350
LDT ++ + L+ L N + L P +L L L +N + C C
Sbjct: 533 --------LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584
Query: 351 ILYMARWLRANRRKVWD-SKPTCRGPGNLGGKSVEDMSFDDLCE 393
+W++ R+ + + + C P + G V +S + C+
Sbjct: 585 HQSFLQWIKDQRQLLVEVERMECATPSDKQGMPV--LSLNITCQ 626
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 30/151 (19%)
Query: 153 LTSIQYGTFSGMY--SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFN 210
L + ++G F + SLKRL SN+ + DL L+FL L N LSF +
Sbjct: 335 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQS 392
Query: 211 YFK--HLTFLELSENWISSLNGD---------------------EFSQLTSLKEL-HLGQ 246
F L +L+LS N + +++ + EFS SL+ L +L
Sbjct: 393 DFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452
Query: 247 NYIETIPA--GSFANLQSLEKLFLYSNNIQE 275
++ T A G F L SLE L + N+ QE
Sbjct: 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 483
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 58/214 (27%)
Query: 170 LKLQSNRINQLPPGIFDDLK--YLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
++ + + LP GI D+ YLD N+ + + L NY KHLT ++LS N IS+
Sbjct: 15 VRCSNKGLKVLPKGIPRDVTELYLD-----GNQFTLVPKELSNY-KHLTLIDLSNNRIST 68
Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXX 287
L+ FS +T L L L N + IP
Sbjct: 69 LSNQSFSNMTQLLTLILSYNRLRCIPP--------------------------------- 95
Query: 288 XXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHC 347
+ F+ + L+ L L N + + + + L L L + NP +C
Sbjct: 96 ---------------RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140
Query: 348 DCAILYMARWLRANRRKVWDSKPTCRGPGNLGGK 381
DC + +++ W+++ ++ ++ C GPG + K
Sbjct: 141 DCNMQWLSDWVKSEYKEPGIAR--CAGPGEMADK 172
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 20/124 (16%)
Query: 120 TVVQLSYNAIESLPANVFHDLISL-----------EEL---------DLSQNVLTSIQYG 159
TVV+ S ++ LP + D+ L +EL DLS N ++++
Sbjct: 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQ 72
Query: 160 TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLE 219
+FS M L L L NR+ +PP FD LK L LSL N +S + G FN L+ L
Sbjct: 73 SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132
Query: 220 LSEN 223
+ N
Sbjct: 133 IGAN 136
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
LT++ LS N I +L F ++ L L LS N L I TF G+ SL+ L L N I+
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 179 QLPPGIFDDLKYLDFLSLRNNRL 201
+P G F+DL L L++ N L
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPL 138
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 71 LTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE 130
+TEL L N + +P +L + +L+ +DLS N I TL + F +L + LSYN +
Sbjct: 33 VTELYLDGNQFTLVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 131 SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
+P F L SL L L N ++ + G F+ + +L L + +N
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG 86
+ C + ++ LP + IP D+ + L NQ + + K+ + LT + L N +S L
Sbjct: 15 VRCSNKGLKVLP--KGIPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSN 71
Query: 87 KLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEEL 146
+ F + L T+ LS N ++ +P F G L ++ L N I +P F+DL +L L
Sbjct: 72 QSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131
Query: 147 DLSQNVL 153
+ N L
Sbjct: 132 AIGANPL 138
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 118/253 (46%), Gaps = 41/253 (16%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-PGKLFISTINLSTMDLSQNLIK 106
+++D+ +N L LT L L N ++++ P K + NL+ ++LS N I
Sbjct: 90 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTIS 146
Query: 107 TLPSTFFKGAIRLTVVQLSY-NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMY 165
+ + G L QLS+ N + L +L +LE LD+S N ++ I + +
Sbjct: 147 DISA--LSGLTSLQ--QLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISV--LAKLT 198
Query: 166 SLKRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENW 224
+L+ L +N+I+ + P GI L LD LSL N+L I G +LT L+L+ N
Sbjct: 199 NLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 253
Query: 225 ISSLNGDEFSQLTSLKELHLGQNYIETIP--AG------------------SFANLQSLE 264
IS+L S LT L EL LG N I I AG +NL++L
Sbjct: 254 ISNL--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 311
Query: 265 KLFLYSNNIQELH 277
L LY NNI ++
Sbjct: 312 YLTLYFNNISDIS 324
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 34/157 (21%)
Query: 50 IDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLP 109
+DL NQ+S L+ +GL KLTELKL N +S +
Sbjct: 247 LDLANNQISNLAP--LSGLTKLTELKLGANQISNI------------------------- 279
Query: 110 STFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKR 169
+ G LT ++L+ N +E + +L +L L L N ++ I S + L+R
Sbjct: 280 -SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 334
Query: 170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRP 206
L +N+++ + +L +++LS +N++S + P
Sbjct: 335 LFFANNKVSDVSS--LANLTNINWLSAGHNQISDLTP 369
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 118/253 (46%), Gaps = 41/253 (16%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-PGKLFISTINLSTMDLSQNLIK 106
+++D+ +N L LT L L N ++++ P K + NL+ ++LS N I
Sbjct: 91 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTIS 147
Query: 107 TLPSTFFKGAIRLTVVQLSY-NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMY 165
+ + G L QLS+ N + L +L +LE LD+S N ++ I + +
Sbjct: 148 DISA--LSGLTSLQ--QLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISV--LAKLT 199
Query: 166 SLKRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENW 224
+L+ L +N+I+ + P GI L LD LSL N+L I G +LT L+L+ N
Sbjct: 200 NLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 254
Query: 225 ISSLNGDEFSQLTSLKELHLGQNYIETIP--AG------------------SFANLQSLE 264
IS+L S LT L EL LG N I I AG +NL++L
Sbjct: 255 ISNL--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 312
Query: 265 KLFLYSNNIQELH 277
L LY NNI ++
Sbjct: 313 YLTLYFNNISDIS 325
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 47/89 (52%)
Query: 183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKEL 242
G+F L +L L L+ N+L+ I P F H+ L+L EN I ++ F L LK L
Sbjct: 48 GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107
Query: 243 HLGQNYIETIPAGSFANLQSLEKLFLYSN 271
+L N I + GSF +L SL L L SN
Sbjct: 108 NLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 73/199 (36%), Gaps = 56/199 (28%)
Query: 194 LSLRNNRLSFIRP-GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
L L +N L I GLF HL LEL N ++ + + F + ++EL LG+N I+ I
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93
Query: 253 PAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLK 312
F L L+ L LY N I
Sbjct: 94 SNKMFLGLHQLKTLNLYDNQI--------------------------------------- 114
Query: 313 KLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTC 372
+ S L +L +L LA NP++C+C + + A WLR ++ + C
Sbjct: 115 ---------SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLR--KKSLNGGAARC 163
Query: 373 RGPGNLGGKSVEDMSFDDL 391
P V D+ DL
Sbjct: 164 GAP-----SKVRDVQIKDL 177
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 96 STMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPAN-VFHDLISLEELDLSQNVLT 154
+T+D + +K +P + T + L+ N + + ++ +F L L +L+L +N LT
Sbjct: 11 TTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 155 SIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKH 214
I+ F G ++ L+L N+I ++ +F L L L+L +N++S + PG F +
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
Query: 215 LTFLELSEN 223
LT L L+ N
Sbjct: 128 LTSLNLASN 136
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 50 IDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLP 109
++L NQL+ + +AF G + EL+L +N + E+ K+F+ L T++L N I +
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 110 STFFKGAIRLTVVQLSYN 127
F+ LT + L+ N
Sbjct: 119 PGSFEHLNSLTSLNLASN 136
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 39/252 (15%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-PGKLFISTINLSTMDLSQNLIK 106
+++D+ +N L LT L L N ++++ P K + NL+ ++LS N I
Sbjct: 86 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTIS 142
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ + G L + + P +L +LE LD+S N ++ I + + +
Sbjct: 143 DISA--LSGLTSLQQLNFGNQVTDLKP---LANLTTLERLDISSNKVSDISV--LAKLTN 195
Query: 167 LKRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
L+ L +N+I+ + P GI L LD LSL N+L I G +LT L+L+ N I
Sbjct: 196 LESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 250
Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIP--AG------------------SFANLQSLEK 265
S+L S LT L EL LG N I I AG +NL++L
Sbjct: 251 SNL--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 308
Query: 266 LFLYSNNIQELH 277
L LY NNI ++
Sbjct: 309 LTLYFNNISDIS 320
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 68/139 (48%), Gaps = 12/139 (8%)
Query: 140 LISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
L +L+EL L+ N L I GT + + +L L L +N+I+ L P L L L L N
Sbjct: 215 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 270
Query: 200 RLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI-PAGSFA 258
++S I P LT LEL+EN + + S L +L L L N I I P S
Sbjct: 271 QISNISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISPVSSLT 326
Query: 259 NLQSLEKLFLYSNNIQELH 277
LQ +LF Y+N + ++
Sbjct: 327 KLQ---RLFFYNNKVSDVS 342
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 39/252 (15%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-PGKLFISTINLSTMDLSQNLIK 106
+++D+ +N L LT L L N ++++ P K + NL+ ++LS N I
Sbjct: 86 KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTIS 142
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ + G L + + P +L +LE LD+S N ++ I + + +
Sbjct: 143 DISA--LSGLTSLQQLNFGNQVTDLKP---LANLTTLERLDISSNKVSDISV--LAKLTN 195
Query: 167 LKRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
L+ L +N+I+ + P GI L LD LSL N+L I G +LT L+L+ N I
Sbjct: 196 LESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 250
Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIP--AG------------------SFANLQSLEK 265
S+L S LT L EL LG N I I AG +NL++L
Sbjct: 251 SNL--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 308
Query: 266 LFLYSNNIQELH 277
L LY NNI ++
Sbjct: 309 LTLYFNNISDIS 320
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 50 IDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTL- 108
+DL NQ+S L+ +GL KLTELKL N +S + ++ L+ ++L++N ++ +
Sbjct: 243 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA--LTNLELNENQLEDIS 298
Query: 109 PSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK 168
P + K LT + L +N I + L L+ L S N ++ + + + + ++
Sbjct: 299 PISNLK---NLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNIN 351
Query: 169 RLKLQSNRINQLPP 182
L N+I+ L P
Sbjct: 352 WLSAGHNQISDLTP 365
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 3/162 (1%)
Query: 92 TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPA-NVFHDLISLEELDLSQ 150
T +L +DLS N + T+ S F G +L + ++ ++ + +VF L +L LD+S
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 151 NVLTSIQYGTFSGMYSLKRLKLQSNRINQ-LPPGIFDDLKYLDFLSLRNNRLSFIRPGLF 209
G F+G+ SL+ LK+ N + P IF +L+ L FL L +L + P F
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490
Query: 210 NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIET 251
N L L +S N SL+ + L SL+ L N+I T
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 96/182 (52%), Gaps = 8/182 (4%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG-KLFISTINLSTMDLSQNLI 105
++ +DL N + T+S + F GL +L L + ++L ++ +F+S NL +D+S
Sbjct: 375 LKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 106 KTLPSTFFKGAIRLTVVQLSYNAI-ESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM 164
+ + F G L V++++ N+ E+ ++F +L +L LDLSQ L + F+ +
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 165 YSLKRLKLQSNR---INQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELS 221
SL+ L + N ++ P + L+ LD+ SL N+ ++ + L ++ L FL L+
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY-SL-NHIMTSKKQELQHFPSSLAFLNLT 551
Query: 222 EN 223
+N
Sbjct: 552 QN 553
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 69 YKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNA 128
Y+ EL K +P L ST NL DLS N ++ L S F L V+ LS
Sbjct: 12 YQCMELNFYK-----IPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCE 63
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
I+++ + L L L L+ N + S+ G FSG+ SL++L + L L
Sbjct: 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 189 KYLDFLSLRNNRL-SFIRPGLFNYFKHLTFLELSENWISSL 228
K L L++ +N + SF P F+ +L L+LS N I S+
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 8/163 (4%)
Query: 120 TVVQLSYNAIE----SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
V ++Y +E +P N+ S + LDLS N L + +F L+ L L
Sbjct: 6 VVPNITYQCMELNFYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62
Query: 176 RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQ 235
I + G + L +L L L N + + G F+ L L E ++SL
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 236 LTSLKELHLGQNYIETIPAGS-FANLQSLEKLFLYSNNIQELH 277
L +LKEL++ N I++ F+NL +LE L L SN IQ ++
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 38/206 (18%)
Query: 26 TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
T C + + ++P + +P + +DL N L L +F +L L L + + +
Sbjct: 11 TYQCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Query: 86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAI---RLTVVQLSYNAIESLPANVFHDLIS 142
+ S +LST+ L+ N I++L F G +L V+ + ++E+ P L +
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG---HLKT 125
Query: 143 LEELDLSQNVLTSIQYGT-FSGMYSLKRLKLQSNRI-----------NQLP--------- 181
L+EL+++ N++ S + FS + +L+ L L SN+I +Q+P
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 182 --------PGIFDDLKYLDFLSLRNN 199
PG F +++ L L+LRNN
Sbjct: 186 LNPMNFIQPGAFKEIR-LHKLTLRNN 210
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 114/284 (40%), Gaps = 55/284 (19%)
Query: 139 DLISLEELDLSQNVL-------------TSIQY------------GTFSGMYSLKRLKLQ 173
DL SLE LDLS+N L TS++Y F G+ L+ L Q
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404
Query: 174 SNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN-WISSLNGD 231
+ + Q+ +F L+ L +L + + G+FN L L+++ N + + D
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 232 EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXX 291
F++L +L L L Q +E + +F +L SL+ L + NN
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS---------------- 508
Query: 292 XXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLP-NLITLKLAKNPWHCDCA 350
LDT ++ + L+ L N + L P +L L L +N + C C
Sbjct: 509 --------LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560
Query: 351 ILYMARWLRANRRKVWD-SKPTCRGPGNLGGKSVEDMSFDDLCE 393
+W++ R+ + + + C P + G V +S + C+
Sbjct: 561 HQSFLQWIKDQRQLLVEVERMECATPSDKQGMPV--LSLNITCQ 602
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 30/151 (19%)
Query: 153 LTSIQYGTFSGMY--SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFN 210
L + ++G F + SLKRL SN+ + DL L+FL L N LSF +
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQS 368
Query: 211 YF--KHLTFLELSENWISSLNGD---------------------EFSQLTSLKEL-HLGQ 246
F L +L+LS N + +++ + EFS SL+ L +L
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 247 NYIETIPA--GSFANLQSLEKLFLYSNNIQE 275
++ T A G F L SLE L + N+ QE
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 83/374 (22%), Positives = 146/374 (39%), Gaps = 32/374 (8%)
Query: 32 QDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG----- 86
+D+ + + + ++L ++ S +S F +L EL L HL LP
Sbjct: 238 EDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGL 297
Query: 87 ----KLFISTINLSTM-DLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLI 141
KL +S + + +S +L + +G ++ + L +E L
Sbjct: 298 NLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVK--KLHLGVGCLEKLG-------- 347
Query: 142 SLEELDLSQNVLTSIQYGTFS--GMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
+L+ LDLS N + + + + L+ L L N L F + L+ L L
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 200 RLSFIRP-GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE--TIPAGS 256
RL P F L L L+ ++ + N + L L+ L+L N+ + TI +
Sbjct: 408 RLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTN 467
Query: 257 F-ANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKK-- 313
+ SLE L L S + + L + + + HLK
Sbjct: 468 LLQTVGSLEVLILSSCGLLSI---DQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIY 524
Query: 314 LQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDS-KPTC 372
L L +N + ++ L +L T+ L+ NP C C+ ++ W + N K+ S + TC
Sbjct: 525 LNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCSNIHFLTWYKENLHKLEGSEETTC 584
Query: 373 RGPGNLGGKSVEDM 386
P +L G + D+
Sbjct: 585 ANPPSLRGVKLSDV 598
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 87/379 (22%), Positives = 145/379 (38%), Gaps = 69/379 (18%)
Query: 26 TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
T +C + E+P +P ++ N L T+ F+ L LT L L + ++ +
Sbjct: 13 TYNCENLGLSEIP--DTLPNTTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIH 70
Query: 86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEE 145
F S LST+ L+ N + + T G L + L I +L H+L +LE
Sbjct: 71 EDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLES 130
Query: 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLD-----FLSLRNNR 200
L L N ++SI++ +LK L Q+N I+ + +D++ L+ L+ N
Sbjct: 131 LYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISR---EDMRSLEQAINLSLNFNGNN 187
Query: 201 LSFIRPGLFN--YFKHLTF----------------------------------------- 217
+ I G F+ F+ L F
Sbjct: 188 VKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKG 247
Query: 218 --------LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLY 269
L L E+ S ++ F T L+EL L +++ +P+G L L+KL L
Sbjct: 248 LCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSG-MKGLNLLKKLVLS 306
Query: 270 SNNIQELHXXXXXXXXXXXXXXXXXXXXR-YLDTKAFEPMLHLKKLQLDSNKLQYLATDS 328
N+ +L + +L E + +L+ L L N ++ A+D
Sbjct: 307 VNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIE--ASDC 364
Query: 329 LSL----LPNLITLKLAKN 343
SL L +L TL L+ N
Sbjct: 365 CSLQLKNLSHLQTLNLSHN 383
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 143/367 (38%), Gaps = 32/367 (8%)
Query: 39 FDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG------KLFIST 92
F+ + + + I+L ++ S LS F ++ EL L HL+ LP L
Sbjct: 247 FEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLV 306
Query: 93 INLSTMD-LSQNLIKTLPST---FFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
+N ++ D L Q + PS + KG +R + L +E L +L++LDL
Sbjct: 307 LNANSFDQLCQINAASFPSLRDLYIKGNMR--KLDLGTRCLEKLE--------NLQKLDL 356
Query: 149 SQNVLTSIQYGTFS--GMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRP 206
S + + + + L+ L L N L F + L+ L + L P
Sbjct: 357 SHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAP 416
Query: 207 -GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ---S 262
F L L LS + + N + L L+ L+L N + LQ S
Sbjct: 417 HSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGS 476
Query: 263 LEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLD--SNK 320
LE L L S N+ + L + + + HLK L L+ SN
Sbjct: 477 LEILILSSCNLLSI---DQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNN 533
Query: 321 LQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDS-KPTCRGPGNLG 379
++ + L L + L+ NP C C+ ++ W + N K+ DS + TC P +L
Sbjct: 534 IRIIPPHLLPALSQQSIINLSHNPLDCTCSNIHFITWYKENLHKLEDSEETTCANPPSLR 593
Query: 380 GKSVEDM 386
G + D+
Sbjct: 594 GVKLSDV 600
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 121/304 (39%), Gaps = 56/304 (18%)
Query: 26 TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
T +C + E+P +P V++ N L T+ F+ L L L L + ++ +
Sbjct: 15 TYNCENLGLREIP--DTLPNTTEVLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVH 72
Query: 86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEE 145
F S L+T+ L+ N + + T G L + L+ I +L H+L +LE
Sbjct: 73 EDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLES 132
Query: 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN--------------------------Q 179
L L N ++SI +LK L Q+N I+
Sbjct: 133 LHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNFNGNDIKG 192
Query: 180 LPPG-----IFDDLK-------YLDFLSLRNNRLSFIRPGLF-----NYFKHLTF----- 217
+ PG IF LK ++ F L+N+ L + G F Y TF
Sbjct: 193 IEPGAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSATFEGLCD 252
Query: 218 -----LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNN 272
+ L ++ S L+ F T ++EL L ++ +P+G + SL+KL L +N+
Sbjct: 253 MSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSG-IEGMNSLKKLVLNANS 311
Query: 273 IQEL 276
+L
Sbjct: 312 FDQL 315
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 5/167 (2%)
Query: 171 KLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNG 230
K S +N +P G+ + +K LD L NNR+++I +L L L+ N I+++
Sbjct: 11 KGSSGSLNSIPSGLTEAVKSLD---LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 67
Query: 231 DEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXX 290
D FS L SL+ L L NY+ + + F L SL L L N + L
Sbjct: 68 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 127
Query: 291 XXXXXXXRY--LDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
+ + K F + L++L++D++ LQ SL + N+
Sbjct: 128 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 174
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 33/193 (17%)
Query: 81 LSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDL 140
L+ +P L T + ++DLS N I + ++ + + L + L+ N I ++ + F L
Sbjct: 17 LNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 73
Query: 141 ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR 200
SLE LDLS N L+++ F + SL L L N L
Sbjct: 74 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL-------------------- 113
Query: 201 LSFIRPGLFNYFKHLTFLEL----SENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS 256
G + F HLT L++ + + + + +F+ LT L+EL + + +++ S
Sbjct: 114 ------GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 167
Query: 257 FANLQSLEKLFLY 269
++Q++ L L+
Sbjct: 168 LKSIQNVSHLILH 180
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 2/152 (1%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
++ +DL N+++ +S L L L N ++ + F S +L +DLS N +
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESL-PANVFHDLISLEELDL-SQNVLTSIQYGTFSGM 164
L S++FK LT + L N ++L ++F L L+ L + + + T IQ F+G+
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 147
Query: 165 YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSL 196
L+ L++ ++ + P ++ + L L
Sbjct: 148 TFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 179
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 28/92 (30%)
Query: 310 HLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN------------------------PW 345
LK+L + NKL L SLLP L+ LK+++N PW
Sbjct: 452 QLKELYISRNKLMTLP--DASLLPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
Query: 346 HCDCA-ILYMARWLRANRRKVWDSKPTCRGPG 376
C C I Y++RWL N +K S C G G
Sbjct: 510 DCSCPRIDYLSRWLNKNSQKEQGS-AKCSGSG 540
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL 104
V+++ + L N ++T+ +D+F+ L L L L N+LS L F +L+ ++L N
Sbjct: 50 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 109
Query: 105 IKTLPST-FFKGAIRLTVVQL-SYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFS 162
KTL T F +L ++++ + + + F L LEEL++ + L S + +
Sbjct: 110 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 169
Query: 163 GMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
+ ++ L L + L D ++ L LR+ L
Sbjct: 170 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 208
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 25/219 (11%)
Query: 65 FTGLYKLTELKLRKNHLSELPGKLFISTINLST-------MDLSQNLI--KTLPSTFFKG 115
+ LY LTE R ++ K+F+ LS +DLS+NL+ + L ++ +
Sbjct: 302 LSTLYSLTE---RVKRITVENSKVFLVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACED 358
Query: 116 A-IRLTVVQLSYNAIESL--PANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKL 172
A L + L N + SL L +L +D+S+N S+ T +K L L
Sbjct: 359 AWPSLQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMP-ETCQWPEKMKYLNL 417
Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDE 232
S RI+ + I L+ LD + N S P L L +S N + +L +
Sbjct: 418 SSTRIHSVTGCIPKTLEILDVSNNNLNLFSLNLP-------QLKELYISRNKLMTL--PD 468
Query: 233 FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
S L L L + +N ++++P G F L SL+K++L++N
Sbjct: 469 ASLLPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Query: 81 LSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDL 140
LS++P + ST N+ DLS N +K L S F L + LS IE++ +H L
Sbjct: 18 LSKVPDDIPSSTKNI---DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL 74
Query: 141 ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR 200
L L L+ N + S G+FSG+ SL+ L ++ L L L L++ +N
Sbjct: 75 HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 134
Query: 201 LSFIR-PGLFNYFKHLTFLELSENWISSLNGDE 232
+ + P F+ +L ++LS N+I ++ ++
Sbjct: 135 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 167
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 3/184 (1%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG-KLFISTINLSTMDLSQNLI 105
+R +DL N +S + F GL +L L + + L + F+S L +D+S
Sbjct: 373 LRHLDLSFNGAIIMSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 431
Query: 106 KTLPSTFFKGAIRLTVVQLSYNAI-ESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM 164
K F G L ++++ N+ ++ +NVF + +L LDLS+ L I +G F +
Sbjct: 432 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 491
Query: 165 YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENW 224
+ L+ L + N + L ++ L L L NR+ + L ++ K L F L+ N
Sbjct: 492 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 551
Query: 225 ISSL 228
++ +
Sbjct: 552 VACI 555
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 27/157 (17%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
+ LS+N ++ L + F + L+ LDLS+ + +I+ + G++ L L L N I
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE 241
PG F L SL N L E ++SL QL +LK+
Sbjct: 92 PGSFSGLT-----SLEN-------------------LVAVETKLASLESFPIGQLITLKK 127
Query: 242 LHLGQNYIET--IPAGSFANLQSLEKLFLYSNNIQEL 276
L++ N+I + +PA F+NL +L + L N IQ +
Sbjct: 128 LNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTI 163
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 27/180 (15%)
Query: 26 TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
T C Q + ++P D IP + IDL N L L +F+ +L L
Sbjct: 10 TYQCMDQKLSKVPDD--IPSSTKNIDLSFNPLKILKSYSFSNFSELQWL----------- 56
Query: 86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEE 145
DLS+ I+T+ + G L+ + L+ N I+S F L SLE
Sbjct: 57 -------------DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 103
Query: 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP-PGIFDDLKYLDFLSLRNNRLSFI 204
L + L S++ + +LK+L + N I+ P F +L L + L N + I
Sbjct: 104 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 163
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Query: 81 LSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDL 140
LS++P + ST N+ DLS N +K L S F L + LS IE++ +H L
Sbjct: 23 LSKVPDDIPSSTKNI---DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL 79
Query: 141 ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR 200
L L L+ N + S G+FSG+ SL+ L ++ L L L L++ +N
Sbjct: 80 HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139
Query: 201 LSFIR-PGLFNYFKHLTFLELSENWISSLNGDE 232
+ + P F+ +L ++LS N+I ++ ++
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 3/184 (1%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG-KLFISTINLSTMDLSQNLI 105
+R +DL N +S + F GL +L L + + L + F+S L +D+S
Sbjct: 378 LRHLDLSFNGAIIMSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436
Query: 106 KTLPSTFFKGAIRLTVVQLSYNAI-ESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM 164
K F G L ++++ N+ ++ +NVF + +L LDLS+ L I +G F +
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496
Query: 165 YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENW 224
+ L+ L + N + L ++ L L L NR+ + L ++ K L F L+ N
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556
Query: 225 ISSL 228
++ +
Sbjct: 557 VACI 560
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 27/157 (17%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
+ LS+N ++ L + F + L+ LDLS+ + +I+ + G++ L L L N I
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE 241
PG F L SL N L E ++SL QL +LK+
Sbjct: 97 PGSFSGLT-----SLEN-------------------LVAVETKLASLESFPIGQLITLKK 132
Query: 242 LHLGQNYIET--IPAGSFANLQSLEKLFLYSNNIQEL 276
L++ N+I + +PA F+NL +L + L N IQ +
Sbjct: 133 LNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTI 168
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 27/180 (15%)
Query: 26 TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
T C Q + ++P D IP + IDL N L L +F+ +L L
Sbjct: 15 TYQCMDQKLSKVPDD--IPSSTKNIDLSFNPLKILKSYSFSNFSELQWL----------- 61
Query: 86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEE 145
DLS+ I+T+ + G L+ + L+ N I+S F L SLE
Sbjct: 62 -------------DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108
Query: 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP-PGIFDDLKYLDFLSLRNNRLSFI 204
L + L S++ + +LK+L + N I+ P F +L L + L N + I
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 313 KLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWL--RANRRKVWDSKP 370
+L L N L + + LP L T L NPW CDC++ Y+ WL R R D +
Sbjct: 34 ELVLTGNNLTSVPPGAFDHLPQLRTAHLGANPWRCDCSLTYLRLWLEDRPERAPYRDLR- 92
Query: 371 TCRGPGNLGGKSVEDMSFDDL 391
C P L G+ + ++ D+L
Sbjct: 93 -CVAPPALRGRLLPYLAEDEL 112
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 47/211 (22%)
Query: 33 DMEELPFDQIIP--VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFI 90
++EE P + V + ++D N++ L +AF KLT+LKL N + E+P
Sbjct: 559 NLEEFPASASLQKXVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEEIPEDFCA 616
Query: 91 STINLSTMDLSQNLIKTLPSTF-------------------------------FKGAIRL 119
T + + S N +K +P+ F +KG I
Sbjct: 617 FTDQVEGLGFSHNKLKYIPNIFNAKSVYVXGSVDFSYNKIGSEGRNISCSXDDYKG-INA 675
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI-------QYGTFSGMYSLKRLKL 172
+ V LSYN I+ P +F + + LS N+ TSI + G + Y L + L
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLXTSIPENSLKPKDGNYKNTYLLTTIDL 735
Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSF 203
+ N++ L DD + L N +S+
Sbjct: 736 RFNKLTSLS----DDFRATTLPYLSNXDVSY 762
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 8/169 (4%)
Query: 77 RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
R + +P L T + ++DLS N I + + L V+ L + I ++ +
Sbjct: 39 RSRSFTSIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 95
Query: 137 FHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP-PGIFDDLKYLDFLS 195
F+ L SLE LDLS N L+S+ F + SLK L L N L +F +L L L
Sbjct: 96 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 155
Query: 196 LRN-NRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELH 243
+ N S IR F L LE+ SL + L S++++H
Sbjct: 156 IGNVETFSEIRRIDFAGLTSLNELEIKA---LSLRNYQSQSLKSIRDIH 201
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK 213
TSI G + M K L L N+I + G L L L+++R++ I F
Sbjct: 44 TSIPSGLTAAM---KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 100
Query: 214 HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS-FANLQSLEKL 266
L L+LS+N +SSL+ F L+SLK L+L N +T+ S F NL +L+ L
Sbjct: 101 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 154
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 33/243 (13%)
Query: 160 TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL--SFIR-PGLFNYFKHLT 216
+S + +KR+ ++++++ +P LK L+FL L N + +++ + L
Sbjct: 331 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 390
Query: 217 FLELSENWISSL--NGDEFSQLTSLKELHLGQNYIETIPAGS-------FANL------- 260
L LS+N + S+ G+ L +L L + +N +P F NL
Sbjct: 391 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV 450
Query: 261 ------QSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKL 314
Q+LE L + +NN+ + L + P+L + K+
Sbjct: 451 VKTCIPQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPDASLFPVLLVMKI 506
Query: 315 QLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCR 373
SN+L+ + L +L + L NPW C C I Y++RWL N +K S C
Sbjct: 507 A--SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCS 563
Query: 374 GPG 376
G G
Sbjct: 564 GSG 566
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 28/151 (18%)
Query: 71 LTELKLRKNHLSEL--PGKLFISTINLSTMDLSQNLIKTLPST-----------FFKGAI 117
L L L +NHL + G++ ++ NL+++D+S+N +P + I
Sbjct: 389 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 448
Query: 118 R---------LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK 168
R L V+ +S N ++S ++F L L+EL +S+N L ++ + + L
Sbjct: 449 RVVKTCIPQTLEVLDVSNNNLDSF--SLF--LPRLQELYISRNKLKTLPDASLFPV--LL 502
Query: 169 RLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
+K+ SN++ +P GIFD L L + L N
Sbjct: 503 VMKIASNQLKSVPDGIFDRLTSLQKIWLHTN 533
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 8/163 (4%)
Query: 45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL 104
+++V+ L ++++T+ DAF L L L L NHLS L F +L ++L N
Sbjct: 76 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 135
Query: 105 IKTLPST-FFKGAIRLTVVQL----SYNAIESLPANVFHDLISLEELDLSQNVLTSIQYG 159
+TL T F L +++ +++ I + F L SL EL++ L + Q
Sbjct: 136 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID---FAGLTSLNELEIKALSLRNYQSQ 192
Query: 160 TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202
+ + + L L + L D L + +L LR+ L+
Sbjct: 193 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 235
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 15/183 (8%)
Query: 94 NLSTMDLSQNLI--KTLPSTFFKGA-IRLTVVQLSYNAIESL--PANVFHDLISLEELDL 148
+L +DLS+NL+ + L ++ KGA L + LS N + S+ + L +L LD+
Sbjct: 361 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 420
Query: 149 SQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGL 208
S+N + + ++ L L S I + I L+ LD + NN L
Sbjct: 421 SRNTFHPMP-DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLD---VSNNNLD----SF 472
Query: 209 FNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL 268
+ L L +S N + +L + S L + + N ++++P G F L SL+K++L
Sbjct: 473 SLFLPRLQELYISRNKLKTL--PDASLFPVLLVMKIASNQLKSVPDGIFDRLTSLQKIWL 530
Query: 269 YSN 271
++N
Sbjct: 531 HTN 533
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 8/169 (4%)
Query: 77 RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
R + +P L T + ++DLS N I + + L V+ L + I ++ +
Sbjct: 13 RSRSFTSIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69
Query: 137 FHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP-PGIFDDLKYLDFLS 195
F+ L SLE LDLS N L+S+ F + SLK L L N L +F +L L L
Sbjct: 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129
Query: 196 LRN-NRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELH 243
+ N S IR F L LE+ SL + L S++++H
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKA---LSLRNYQSQSLKSIRDIH 175
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK 213
TSI G + M K L L N+I + G L L L+++R++ I F
Sbjct: 18 TSIPSGLTAAM---KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 74
Query: 214 HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS-FANLQSLEKL 266
L L+LS+N +SSL+ F L+SLK L+L N +T+ S F NL +L+ L
Sbjct: 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 99/243 (40%), Gaps = 33/243 (13%)
Query: 160 TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL--SFIR-PGLFNYFKHLT 216
+S + +KR+ ++++++ +P LK L+FL L N + +++ + L
Sbjct: 305 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364
Query: 217 FLELSENWISSL--NGDEFSQLTSLKELHLGQNYIETIPAGS-------FANL------- 260
L LS+N + S+ G+ L +L L + +N +P F NL
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV 424
Query: 261 ------QSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKL 314
Q+LE L + +NN+ + L + P+L + K+
Sbjct: 425 VKTCIPQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPDASLFPVLLVMKI 480
Query: 315 QLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCR 373
N+L+ + L +L + L NPW C C I Y++RWL N +K S C
Sbjct: 481 S--RNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCS 537
Query: 374 GPG 376
G G
Sbjct: 538 GSG 540
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 8/163 (4%)
Query: 45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL 104
+++V+ L ++++T+ DAF L L L L NHLS L F +L ++L N
Sbjct: 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109
Query: 105 IKTLPST-FFKGAIRLTVVQL----SYNAIESLPANVFHDLISLEELDLSQNVLTSIQYG 159
+TL T F L +++ +++ I + F L SL EL++ L + Q
Sbjct: 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID---FAGLTSLNELEIKALSLRNYQSQ 166
Query: 160 TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202
+ + + L L + L D L + +L LR+ L+
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 28/151 (18%)
Query: 71 LTELKLRKNHLSEL--PGKLFISTINLSTMDLSQNLIKTLPST-----------FFKGAI 117
L L L +NHL + G++ ++ NL+++D+S+N +P + I
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 422
Query: 118 R---------LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK 168
R L V+ +S N ++S ++F L L+EL +S+N L ++ + + L
Sbjct: 423 RVVKTCIPQTLEVLDVSNNNLDSF--SLF--LPRLQELYISRNKLKTLPDASLFPV--LL 476
Query: 169 RLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
+K+ N++ +P GIFD L L + L N
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 17/184 (9%)
Query: 94 NLSTMDLSQNLI--KTLPSTFFKGA-IRLTVVQLSYNAIESL--PANVFHDLISLEELDL 148
+L +DLS+NL+ + L ++ KGA L + LS N + S+ + L +L LD+
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394
Query: 149 SQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL-SFIRPG 207
S+N + + ++ L L S I + I L+ LD + NN L SF
Sbjct: 395 SRNTFHPMP-DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLD---VSNNNLDSF---S 447
Query: 208 LFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLF 267
LF L L +S N + +L + S L + + +N ++++P G F L SL+K++
Sbjct: 448 LF--LPRLQELYISRNKLKTL--PDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503
Query: 268 LYSN 271
L++N
Sbjct: 504 LHTN 507
>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain
pdb|3RFE|B Chain B, Crystal Structure Of Glycoprotein Gpib Ectodomain
Length = 130
Score = 45.1 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 35/79 (44%)
Query: 313 KLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTC 372
+L L N L L L LP L T L NPW CDC ++ + WL + C
Sbjct: 35 ELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRC 94
Query: 373 RGPGNLGGKSVEDMSFDDL 391
P L G+ + ++ D+L
Sbjct: 95 VAPPALRGRLLPYLAEDEL 113
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 8/134 (5%)
Query: 46 DIRVIDLGINQLSTLSKDA--FTGLYKLTELKLRKNHLSELPGKLFIS-TINLSTMDLSQ 102
++ + L +NQL LSK A T + L +L + +N +S K S T +L ++++S
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408
Query: 103 NLIKTLPSTFFKG-AIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTF 161
N+ L T F+ R+ V+ L N I+S+P V L +L+EL+++ N L S+ G F
Sbjct: 409 NI---LTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIF 464
Query: 162 SGMYSLKRLKLQSN 175
+ SL+++ L +N
Sbjct: 465 DRLTSLQKIWLHTN 478
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 97/236 (41%), Gaps = 37/236 (15%)
Query: 158 YGTFSGMYSLKRLKLQSNR-INQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLT 216
Y FS M ++K + R ++ L P +LDF NN L+ +F HLT
Sbjct: 296 YEIFSNM-NIKNFTVSGTRMVHMLCPSKISPFLHLDF---SNNLLT---DTVFENCGHLT 348
Query: 217 FLE---LSENWISSLN--GDEFSQLTSLKELHLGQNYIE-TIPAGSFANLQSLEKLFLYS 270
LE L N + L+ + +Q+ SL++L + QN + G + +SL L + S
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408
Query: 271 NNIQELHXXXXXXXXXXXXXXXXXXXXRYLD---------TKAFEPMLHLKKLQLDSNKL 321
N + + + LD K + L++L + SN+L
Sbjct: 409 NILTD------------TIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL 456
Query: 322 QYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGPG 376
+ + L +L + L NPW C C I Y++RWL N +K S C G G
Sbjct: 457 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS-AKCSGSG 511
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 83/188 (44%), Gaps = 52/188 (27%)
Query: 98 MDLSQNLIKTLPSTFFKGAIRLTVVQ---LSYNAIESLP--ANVFHDLISLEELDLSQNV 152
+D S NL L T F+ LT ++ L N ++ L A + + SL++LD+SQN
Sbjct: 329 LDFSNNL---LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN- 384
Query: 153 LTSIQY----GTFSGMYSLKRLKLQSNRINQ-----LPPGIFDDLKYLDFLSLRNNRLSF 203
S+ Y G S SL L + SN + LPP I
Sbjct: 385 --SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRI------------------- 423
Query: 204 IRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSL 263
L+L N I S+ + +L +L+EL++ N ++++P G F L SL
Sbjct: 424 ------------KVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSL 470
Query: 264 EKLFLYSN 271
+K++L++N
Sbjct: 471 QKIWLHTN 478
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 78 KNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVF 137
KN L +P L T + +++SQN I L ++ +L ++ +S+N I+ L +VF
Sbjct: 9 KNGLIHVPKDLSQKT---TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF 65
Query: 138 HDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP-PGIFDDLKYLDFLSL 196
LE LDLS N L I + +LK L L N + LP F ++ L FL L
Sbjct: 66 KFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122
Query: 197 RNNRL 201
L
Sbjct: 123 STTHL 127
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 298 RYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARW 357
R++ AF L +L L N L+ L+ ++ L +L L L+ NP HC CA+ ++ RW
Sbjct: 69 RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRW 127
Query: 358 LRANRRKVWDSKPTCRGPGNL 378
V + K C G G L
Sbjct: 128 EEEGLGGVPEQKLQCHGQGPL 148
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 67 GLYKLTELKLR-KNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLS 125
G LTEL + + HL L + L + + ++ ++ + F RL+ + LS
Sbjct: 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88
Query: 126 YNAIESLPANVFHDLISLEELDLSQNVL 153
+NA+ESL L SL+EL LS N L
Sbjct: 89 FNALESLSWKTVQGL-SLQELVLSGNPL 115
>pdb|4H09|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|C Chain C, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|D Chain D, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
pdb|4H09|E Chain E, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Eubven_01088) From Eubacterium Ventriosum Atcc
27560 At 2.50 A Resolution
Length = 379
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 57 LSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGA 116
++TL AF G L E+ + KN ++ + L + L T++ +KT+P G
Sbjct: 228 VTTLGDGAFYGXKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC 285
Query: 117 IRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN- 175
LT V +AIE+L VF D + L + L L +IQ +Y+ K K S
Sbjct: 286 SNLTKVVXDNSAIETLEPRVFXDCVKLSSVTL-PTALKTIQ------VYAFKNCKALSTI 338
Query: 176 ----RINQLPPGIFDD---LKYLDFLSLRNN 199
I + G F+ KY +LS NN
Sbjct: 339 SYPKSITLIESGAFEGSSITKYPTWLSKGNN 369
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Query: 80 HLSELPGKLFISTINLSTMDLSQNLIKTL--PSTFFKGAIRLTVVQLSYNAIESLPANVF 137
+L+ +P L T LS LSQN I L P F +R V++LS+N I SL +VF
Sbjct: 42 NLTHVPKDLPPRTKALS---LSQNSISELRMPDISFLSELR--VLRLSHNRIRSLDFHVF 96
Query: 138 HDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGI-FDDLKYLDFLSL 196
LE LD+S N L +I + M SL+ L L N + LP F +L L FL L
Sbjct: 97 LFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 10/148 (6%)
Query: 66 TGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKG----AIRLTV 121
+ L +L L L++N L K+ + T N+S+++ + +L S + A + V
Sbjct: 374 STLKRLQTLILQRNGLKNF-FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432
Query: 122 VQLSYNAIESLPANVFHDLI-SLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQL 180
+ LS N L +VF L ++ LDL N + SI + + +L+ L + SN++ +
Sbjct: 433 LNLSSNM---LTGSVFRCLPPKVKVLDLHNNRIMSIPKDV-THLQALQELNVASNQLKSV 488
Query: 181 PPGIFDDLKYLDFLSLRNNRLSFIRPGL 208
P G+FD L L ++ L +N PG+
Sbjct: 489 PDGVFDRLTSLQYIWLHDNPWDCTCPGI 516
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 144 EELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIF---DDLKYLDFLSLRNNR 200
+ L LSQN ++ ++ S + L+ L+L NRI L +F DL+YLD + +NR
Sbjct: 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD---VSHNR 111
Query: 201 LSFIRPGLFNYFKHLTFLELSENWISSLN-GDEFSQLTSLKELHLG 245
L I +H L+LS N L EF LT L L L
Sbjct: 112 LQNISCCPMASLRH---LDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 311 LKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDC-AILYMARWLRANRRKVWDSK 369
L++L + SN+L+ + L +L + L NPW C C I Y++ W+ + V +S
Sbjct: 475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSA 534
Query: 370 PT-------CRGPG 376
+ C G G
Sbjct: 535 GSVAPDSAKCSGSG 548
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 41 QIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLF 89
+ +P ++V+DL N++ ++ KD T L L EL + N L +P +F
Sbjct: 446 RCLPPKVKVLDLHNNRIMSIPKDV-THLQALQELNVASNQLKSVPDGVF 493
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 142 SLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
S+ L+LS N+LT + +K L L +NRI +P + L+ L L++ +N+L
Sbjct: 429 SILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMSIPKDV-THLQALQELNVASNQL 485
Query: 202 SFIRPGLFNYFKHLTFLELSEN-WISSLNGDEF 233
+ G+F+ L ++ L +N W + G +
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 14/125 (11%)
Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
L + LS+N I L DL LEEL +++N L ++ G S L RL L +N +
Sbjct: 65 LKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLN-GIPSA--CLSRLFLDNNELR 119
Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
I LK L+ LS+RNN+L I + + L L+L N I++ G LT
Sbjct: 120 DTDSLIH--LKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGG-----LTR 170
Query: 239 LKELH 243
LK+++
Sbjct: 171 LKKVN 175
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 33/119 (27%)
Query: 225 ISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXX 284
I SL G +F T+LKELHL N I + +L LE+L + N ++ L+
Sbjct: 53 IQSLAGMQF--FTNLKELHLSHNQISDL--SPLKDLTKLEELSVNRNRLKNLNGI----- 103
Query: 285 XXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
P L +L LD+N+L+ TDSL L NL L + N
Sbjct: 104 ----------------------PSACLSRLFLDNNELR--DTDSLIHLKNLEILSIRNN 138
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
Query: 39 FDQIIP-----VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP-------G 86
FD + P +++ I+L NQ+S K+ F+ L+ + L N L+E+P
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDEN 481
Query: 87 KLFISTINLSTMDLSQNLIKTLPSTFFKGAIR-LTVVQLSYNAIESLPA 134
+ F +T L+++DL N + L F + L + LSYN+ P
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT 530
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 84/220 (38%), Gaps = 40/220 (18%)
Query: 40 DQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMD 99
D + I++I +G N L T + T L K +L + ++L GKL
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVE--TSLQKXKKLGXLECLYNQLEGKL----------- 346
Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYG 159
P+ F I+L + L+YN I +PAN +E L + N L I
Sbjct: 347 ---------PA--FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI--- 392
Query: 160 TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLE 219
++ K + + S D Y + S+ + P F +++ +
Sbjct: 393 --PNIFDAKSVSVXSAI----------DFSYNEIGSVDGKNFDPLDPTPFKGI-NVSSIN 439
Query: 220 LSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFAN 259
LS N IS + FS + L ++L N + IP S +
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKD 479
>pdb|4GT6|A Chain A, Crystal Structure Of A Leucine Rich Cell Surface Protein
(Faepraa2165_01021) From Faecalibacterium Prausnitzii
A2-165 At 1.80 A Resolution
Length = 394
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
I LP +VF ISL+ +D+ + + T I F+G L+R+ + S+ + ++P F +
Sbjct: 299 ITELPESVFAGCISLKSIDIPEGI-TQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNC 356
Query: 189 KYLDFLSLRNNR 200
L+ + +R
Sbjct: 357 TALNNIEYSGSR 368
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 4/147 (2%)
Query: 55 NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL-IKTLPSTFF 113
N L ++ +AF L L L + + LP I ++ +D+ N+ I T+ F
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149
Query: 114 KG-AIRLTVVQLSYNAIESLPANVFHDLISLEELDLS-QNVLTSIQYGTFSGMYSLKRLK 171
G + ++ L+ N I+ + + F+ L+EL+LS N L + F G L
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILD 208
Query: 172 LQSNRINQLPPGIFDDLKYLDFLSLRN 198
+ RI+ LP ++LK L S N
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARSTYN 235
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI-SSLNGD 231
Q +++ ++P + + L F+ +L I+ G F+ F L +E+S+N + + D
Sbjct: 17 QESKVTEIPSDLPRNAIELRFVL---TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73
Query: 232 EFSQLTSLKELHLGQ-NYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
FS L L E+ + + N + I +F NL +L+ L + + I+ L
Sbjct: 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 52 LGINQLSTLSKDAFTGLYKLTELKLR-KNHLSELPGKLFISTINLSTMDLSQNLIKTLPS 110
L N + + AF G +L EL L N+L ELP +F +D+S+ I +LPS
Sbjct: 161 LNKNGIQEIHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219
Query: 111 TFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS 149
+ +L + +YN ++ LP L++L E L+
Sbjct: 220 YGLENLKKLR-ARSTYN-LKKLPT--LEKLVALMEASLT 254
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 101/248 (40%), Gaps = 37/248 (14%)
Query: 52 LGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPST 111
+G N+++ +S A L L EL L ++++S++ ++ + + NL P +
Sbjct: 95 IGTNKITDIS--ALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLS 152
Query: 112 FFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLK 171
G LTV + + + +L L L L+ N + I + + SL
Sbjct: 153 NXTGLNYLTVTESKVKDVTPIA-----NLTDLYSLSLNYNQIEDI--SPLASLTSLHYFT 205
Query: 172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGD 231
N+I + P + L+ L + NN+++ + P LT+LE+ N IS +N
Sbjct: 206 AYVNQITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA- 260
Query: 232 EFSQLTSLKELHLGQNYIETIPA-----------------GS-----FANLQSLEKLFLY 269
LT LK L++G N I I G+ L +L LFL
Sbjct: 261 -VKDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLS 319
Query: 270 SNNIQELH 277
N+I ++
Sbjct: 320 QNHITDIR 327
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN-WISSLNGD 231
Q +++ ++P + + L F+ +L I+ G F+ F L +E+S+N + + D
Sbjct: 17 QESKVTEIPSDLPRNAIELRFVL---TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73
Query: 232 EFSQLTSLKELHLGQ-NYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
FS L L E+ + + N + I +F NL +L+ L + + I+ L
Sbjct: 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
Query: 55 NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL-IKTLPSTFF 113
N L ++ +AF L L L + + LP I ++ +D+ N+ I T+ F
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149
Query: 114 KG-AIRLTVVQLSYNAIESLPANVFHDLISLEELDLS-QNVLTSIQYGTFSGMYSLKRLK 171
G + ++ L+ N I+ + F+ L+EL+LS N L + F G L
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILD 208
Query: 172 LQSNRINQLPPGIFDDLKYLDFLSLRN 198
+ RI+ LP ++LK L S N
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARSTYN 235
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 52 LGINQLSTLSKDAFTGLYKLTELKLR-KNHLSELPGKLFISTINLSTMDLSQNLIKTLPS 110
L N + + AF G +L EL L N+L ELP +F +D+S+ I +LPS
Sbjct: 161 LNKNGIQEIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
+DL Q+ +S + F + LT L L N L+ELP ++ + NL +DLS N + +
Sbjct: 227 HALDLSNLQIFNISANIFKYDF-LTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTS 284
Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL 153
LP+ +L N + +LP F +L +L+ L + N L
Sbjct: 285 LPAE-LGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPL 328
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 28/127 (22%)
Query: 118 RLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRI 177
++TV++++ NA+ SLP SLE LD N L+++ SLK L + +N++
Sbjct: 81 QITVLEITQNALISLPELP----ASLEYLDACDNRLSTLP----ELPASLKHLDVDNNQL 132
Query: 178 NQLP--PGIFDDLKY--------------LDFLSLRNNRLSFIRPGLFNYFKHLTFLELS 221
LP P + + + L+ LS+RNN+L+F+ P L + L L++S
Sbjct: 133 TXLPELPALLEYINADNNQLTXLPELPTSLEVLSVRNNQLTFL-PEL---PESLEALDVS 188
Query: 222 ENWISSL 228
N + SL
Sbjct: 189 TNLLESL 195
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 44 PVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG----KLFISTINLSTMD 99
P VI +GI Q+ L+ A Y + +L+L K ++ PG K+F S ++
Sbjct: 59 PSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIE 118
Query: 100 LSQNLIK 106
S ++K
Sbjct: 119 ASIKVVK 125
>pdb|3SB4|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
pdb|3SB4|B Chain B, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bt_1240) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.99 A Resolution
Length = 329
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE-ELDLSQNV 152
NL ++D+S+ T+P F L ++L +N ++++ VF + L L+L +V
Sbjct: 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASV 285
Query: 153 LTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDD 187
T+I++G F G +L+ + ++I L +F +
Sbjct: 286 -TAIEFGAFXGCDNLRYVLATGDKITTLGDELFGN 319
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%)
Query: 136 VFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLS 195
F + S+ LD+S N+L+ M L L L N I+ P DL+ L+ L
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686
Query: 196 LRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
L +N+L P + LT ++LS N +S
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 34/219 (15%)
Query: 36 ELPFDQIIPV-DIRVIDLGINQLST-----------------LSKDAFTGLYKLTELKLR 77
ELP D ++ + ++V+DL N+ S LS + F+G +
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392
Query: 78 KNHLSEL-------PGKLFISTINLS---TMDLSQN-LIKTLPSTFFKGAI-RLTVVQLS 125
KN L EL GK+ + N S ++ LS N L T+PS+ G++ +L ++L
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLW 450
Query: 126 YNAIES-LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGI 184
N +E +P + + + +LE L L N LT S +L + L +NR+ P
Sbjct: 451 LNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509
Query: 185 FDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
L+ L L L NN S P + L +L+L+ N
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 37/183 (20%)
Query: 47 IRVIDLGINQLSTLSKDAFT---GLYKLTELKLRKNHLSELPGKLFIS-TINLSTMDLSQ 102
+ V+DL N +S + + G +L L + N +S G + +S +NL +D+S
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS---GDVDVSRCVNLEFLDVSS 209
Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFS 162
N T +P D +L+ LD+S N L+ S
Sbjct: 210 NNFST-----------------------GIP--FLGDCSALQHLDISGNKLSGDFSRAIS 244
Query: 163 GMYSLKRLKLQSNR-INQLPPGIFDDLKYLDFLSLRNNRLSFIRPG-LFNYFKHLTFLEL 220
LK L + SN+ + +PP LK L +LSL N+ + P L LT L+L
Sbjct: 245 TCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301
Query: 221 SEN 223
S N
Sbjct: 302 SGN 304
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%)
Query: 136 VFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLS 195
F + S+ LD+S N+L+ M L L L N I+ P DL+ L+ L
Sbjct: 624 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 683
Query: 196 LRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
L +N+L P + LT ++LS N +S
Sbjct: 684 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 34/219 (15%)
Query: 36 ELPFDQIIPV-DIRVIDLGINQLST-----------------LSKDAFTGLYKLTELKLR 77
ELP D ++ + ++V+DL N+ S LS + F+G +
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 389
Query: 78 KNHLSEL-------PGKLFISTINLS---TMDLSQN-LIKTLPSTFFKGAI-RLTVVQLS 125
KN L EL GK+ + N S ++ LS N L T+PS+ G++ +L ++L
Sbjct: 390 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLW 447
Query: 126 YNAIES-LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGI 184
N +E +P + + + +LE L L N LT S +L + L +NR+ P
Sbjct: 448 LNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 506
Query: 185 FDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
L+ L L L NN S P + L +L+L+ N
Sbjct: 507 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 37/183 (20%)
Query: 47 IRVIDLGINQLSTLSKDAFT---GLYKLTELKLRKNHLSELPGKLFIS-TINLSTMDLSQ 102
+ V+DL N +S + + G +L L + N +S G + +S +NL +D+S
Sbjct: 150 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS---GDVDVSRCVNLEFLDVSS 206
Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFS 162
N T +P D +L+ LD+S N L+ S
Sbjct: 207 NNFST-----------------------GIP--FLGDCSALQHLDISGNKLSGDFSRAIS 241
Query: 163 GMYSLKRLKLQSNR-INQLPPGIFDDLKYLDFLSLRNNRLSFIRPG-LFNYFKHLTFLEL 220
LK L + SN+ + +PP LK L +LSL N+ + P L LT L+L
Sbjct: 242 TCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 298
Query: 221 SEN 223
S N
Sbjct: 299 SGN 301
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 31/150 (20%)
Query: 55 NQLSTLSKDAFTGLYKL-TELKLRKNHLSELPGKL--FISTINLSTMDLSQNLIKTLPST 111
N++S D++ KL T + + +N L+ GK+ + +NL+ +DLS+N+++ S
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLT---GKIPPTFANLNLAFVDLSRNMLEGDASV 215
Query: 112 FFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLK 171
F + L+ N++ L ++ LS+N L L
Sbjct: 216 LFGSDKNTQKIHLAKNSLA----------FDLGKVGLSKN---------------LNGLD 250
Query: 172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
L++NRI P LK+L L++ N L
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 70/177 (39%), Gaps = 29/177 (16%)
Query: 49 VIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFISTINLSTMDLSQN-LIK 106
+D N LS + + L L + N +S +P + ++M +S+N L
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+P TF + L V LS N +E + +F + +++ L++N L +
Sbjct: 189 KIPPTF--ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA----------FD 236
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
L ++ L N L+ L LRNNR+ P K L L +S N
Sbjct: 237 LGKVGLSKN---------------LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
>pdb|1YXI|A Chain A, R-State Amp Complex Reveals Initial Steps Of The
Quaternary Transition Of Fructose-1,6-Bisphosphatase
pdb|1YYZ|A Chain A, R-State Amp Complex Reveals Initial Steps Of The
Quaternary Transition Of Fructose-1,6-Bisphosphatase
pdb|1YZ0|A Chain A, R-State Amp Complex Reveals Initial Steps Of The
Quaternary Transition Of Fructose-1,6-Bisphosphatase
pdb|1YZ0|B Chain B, R-State Amp Complex Reveals Initial Steps Of The
Quaternary Transition Of Fructose-1,6-Bisphosphatase
Length = 337
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 11/132 (8%)
Query: 54 INQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN--LIKTLPST 111
+N L T K T + K L HL + G ++ + +D+ N +I L S+
Sbjct: 34 LNSLCTAVKAISTAVRKAGIL-----HLYGIAGSTNVTGDQVKKLDVLSNDLVINVLKSS 88
Query: 112 FFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLK 171
F A + V + NAI P ++ + LD S N+ + GT G+Y
Sbjct: 89 F---ATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTD 145
Query: 172 LQSNRINQLPPG 183
S + + L PG
Sbjct: 146 EPSEK-DALQPG 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,767,548
Number of Sequences: 62578
Number of extensions: 403170
Number of successful extensions: 1718
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 482
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)