Query psy12291
Match_columns 404
No_of_seqs 335 out of 3822
Neff 10.6
Searched_HMMs 29240
Date Fri Aug 16 23:34:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12291hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2id5_A Lingo-1, leucine rich r 100.0 7.4E-52 2.5E-56 396.2 31.5 372 13-388 2-373 (477)
2 4g8a_A TOLL-like receptor 4; l 100.0 7.8E-50 2.7E-54 395.7 36.6 377 15-395 24-628 (635)
3 3vq2_A TLR4, TOLL-like recepto 100.0 5.2E-47 1.8E-51 373.4 33.3 373 17-393 6-605 (606)
4 3v47_A TOLL-like receptor 5B a 100.0 1.3E-46 4.4E-51 357.9 30.6 358 13-376 3-438 (455)
5 3t6q_A CD180 antigen; protein- 100.0 8.2E-45 2.8E-49 357.7 34.5 341 46-388 255-603 (606)
6 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.1E-44 1.1E-48 350.0 35.7 364 16-392 26-560 (562)
7 1ziw_A TOLL-like receptor 3; i 100.0 2.3E-44 7.7E-49 359.2 29.4 374 24-397 250-676 (680)
8 3zyj_A Leucine-rich repeat-con 100.0 1.8E-43 6.1E-48 334.3 32.5 312 10-396 31-343 (440)
9 2z63_A TOLL-like receptor 4, v 100.0 2.9E-43 1E-47 344.3 32.8 357 17-376 2-561 (570)
10 3zyi_A Leucine-rich repeat-con 100.0 7.2E-43 2.5E-47 331.3 33.1 312 9-395 41-353 (452)
11 3j0a_A TOLL-like receptor 5; m 100.0 1E-42 3.5E-47 354.0 30.4 369 24-396 6-611 (844)
12 2z7x_B TOLL-like receptor 1, v 100.0 3E-42 1E-46 333.3 32.0 350 24-386 2-517 (520)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-41 4E-46 331.4 31.2 350 27-386 10-546 (549)
14 3t6q_A CD180 antigen; protein- 100.0 4E-40 1.4E-44 324.3 30.8 331 13-346 3-413 (606)
15 2z66_A Variable lymphocyte rec 100.0 3.2E-40 1.1E-44 297.2 25.0 298 14-387 1-303 (306)
16 3o6n_A APL1; leucine-rich repe 100.0 7.4E-40 2.5E-44 304.9 27.4 321 45-378 45-381 (390)
17 1ozn_A Reticulon 4 receptor; N 100.0 2.6E-38 8.7E-43 281.8 27.8 279 13-391 1-281 (285)
18 1xku_A Decorin; proteoglycan, 100.0 7.3E-38 2.5E-42 284.8 30.5 308 7-343 18-329 (330)
19 2ft3_A Biglycan; proteoglycan, 100.0 6.6E-38 2.3E-42 285.3 29.7 302 6-319 19-330 (332)
20 3oja_B Anopheles plasmodium-re 100.0 3.6E-38 1.2E-42 309.0 28.5 301 45-355 51-367 (597)
21 2id5_A Lingo-1, leucine rich r 100.0 1.4E-38 4.9E-43 304.2 24.9 330 22-352 32-362 (477)
22 1ziw_A TOLL-like receptor 3; i 100.0 7.5E-38 2.6E-42 312.1 29.6 323 18-344 2-364 (680)
23 2z80_A TOLL-like receptor 2, v 100.0 2.6E-38 8.8E-43 290.5 20.4 321 14-386 24-350 (353)
24 4fmz_A Internalin; leucine ric 100.0 2.6E-35 9E-40 269.9 29.5 302 22-345 44-345 (347)
25 3v47_A TOLL-like receptor 5B a 100.0 7.6E-36 2.6E-40 283.7 24.5 305 22-326 30-412 (455)
26 3rgz_A Protein brassinosteroid 100.0 1.2E-35 4.1E-40 299.2 24.8 330 23-354 201-559 (768)
27 2ft3_A Biglycan; proteoglycan, 100.0 5.6E-35 1.9E-39 265.9 26.7 288 46-344 34-331 (332)
28 1xku_A Decorin; proteoglycan, 100.0 3.6E-34 1.2E-38 260.4 28.9 269 70-348 32-308 (330)
29 3rgz_A Protein brassinosteroid 100.0 2.2E-35 7.4E-40 297.3 21.9 326 22-348 294-719 (768)
30 3o6n_A APL1; leucine-rich repe 100.0 5.9E-35 2E-39 271.8 22.9 316 23-350 46-378 (390)
31 4fmz_A Internalin; leucine ric 100.0 1.7E-33 6E-38 257.8 28.2 283 45-348 44-326 (347)
32 4eco_A Uncharacterized protein 100.0 2.9E-34 9.8E-39 282.9 24.5 318 22-347 206-601 (636)
33 1o6v_A Internalin A; bacterial 100.0 2.1E-33 7.1E-38 267.3 27.9 303 23-346 47-388 (466)
34 4eco_A Uncharacterized protein 100.0 6.5E-34 2.2E-38 280.4 24.8 323 22-351 249-631 (636)
35 1o6v_A Internalin A; bacterial 100.0 4.1E-33 1.4E-37 265.3 29.2 281 45-347 46-345 (466)
36 2z62_A TOLL-like receptor 4, v 100.0 2.3E-33 7.8E-38 248.6 24.3 263 17-376 2-267 (276)
37 4ecn_A Leucine-rich repeat pro 100.0 5.4E-33 1.8E-37 278.8 27.3 319 22-345 448-818 (876)
38 3oja_B Anopheles plasmodium-re 100.0 2.3E-33 8E-38 274.8 23.1 290 24-323 53-359 (597)
39 4ecn_A Leucine-rich repeat pro 100.0 1.2E-33 4E-38 283.7 20.3 277 63-344 442-787 (876)
40 3vq2_A TLR4, TOLL-like recepto 100.0 3.4E-32 1.2E-36 267.8 30.3 154 47-203 13-167 (606)
41 2o6q_A Variable lymphocyte rec 100.0 6.1E-32 2.1E-36 238.4 27.7 221 166-390 38-261 (270)
42 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.9E-32 2E-36 263.4 29.0 291 47-346 33-486 (562)
43 2z7x_B TOLL-like receptor 1, v 100.0 3.1E-32 1.1E-36 263.1 26.3 290 48-346 3-457 (520)
44 3bz5_A Internalin-J, INLJ; leu 100.0 4E-31 1.4E-35 249.9 32.8 295 22-347 42-353 (457)
45 3j0a_A TOLL-like receptor 5; m 100.0 4.8E-32 1.7E-36 275.6 26.1 295 48-346 7-375 (844)
46 2z63_A TOLL-like receptor 4, v 100.0 8.2E-32 2.8E-36 263.2 26.3 301 22-324 28-533 (570)
47 4g8a_A TOLL-like receptor 4; l 100.0 3.1E-31 1E-35 262.4 30.0 302 22-323 52-581 (635)
48 1p9a_G Platelet glycoprotein I 100.0 2.2E-31 7.5E-36 236.8 25.3 249 113-396 6-268 (290)
49 2z81_A CD282 antigen, TOLL-lik 100.0 4.3E-32 1.5E-36 263.9 18.8 292 50-345 10-422 (549)
50 3g06_A SSPH2 (leucine-rich rep 100.0 1.1E-30 3.9E-35 253.9 22.9 283 1-326 15-301 (622)
51 3bz5_A Internalin-J, INLJ; leu 100.0 1.8E-29 6.2E-34 238.5 30.5 274 45-347 42-332 (457)
52 1ogq_A PGIP-2, polygalacturona 100.0 9E-32 3.1E-36 242.3 12.2 253 69-348 50-306 (313)
53 1jl5_A Outer protein YOPM; leu 100.0 5.8E-29 2E-33 234.9 30.7 288 22-346 91-409 (454)
54 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-30 3.7E-35 235.3 17.8 262 23-296 37-302 (313)
55 2o6q_A Variable lymphocyte rec 100.0 2.4E-29 8.3E-34 221.8 25.0 211 15-227 9-219 (270)
56 1jl5_A Outer protein YOPM; leu 100.0 3.1E-28 1.1E-32 229.9 33.7 284 23-347 72-371 (454)
57 2xwt_C Thyrotropin receptor; s 100.0 3.7E-30 1.3E-34 222.8 18.8 225 12-247 2-236 (239)
58 2v9t_B SLIT homolog 2 protein 100.0 6.4E-30 2.2E-34 218.0 18.8 201 192-397 14-214 (220)
59 3g06_A SSPH2 (leucine-rich rep 100.0 3.2E-28 1.1E-32 236.7 31.3 258 46-347 41-298 (622)
60 3m19_A Variable lymphocyte rec 100.0 1.4E-28 5E-33 214.4 23.4 211 166-379 15-236 (251)
61 2v70_A SLIT-2, SLIT homolog 2 100.0 4.7E-29 1.6E-33 212.6 18.8 202 193-399 15-218 (220)
62 3o53_A Protein LRIM1, AGAP0063 100.0 7.4E-30 2.5E-34 230.4 11.3 248 70-355 11-259 (317)
63 3o53_A Protein LRIM1, AGAP0063 100.0 2.6E-30 8.7E-35 233.4 8.1 258 46-341 11-270 (317)
64 2z80_A TOLL-like receptor 2, v 100.0 4.7E-29 1.6E-33 228.8 15.2 257 23-299 53-315 (353)
65 4ay9_X Follicle-stimulating ho 100.0 6.5E-28 2.2E-32 220.6 18.8 248 14-271 2-256 (350)
66 3oja_A Leucine-rich immune mol 100.0 7.6E-29 2.6E-33 236.3 12.6 234 94-341 35-270 (487)
67 1wwl_A Monocyte differentiatio 100.0 1.4E-29 4.7E-34 228.1 4.3 250 64-346 38-309 (312)
68 3zyj_A Leucine-rich repeat-con 100.0 1.7E-26 5.9E-31 218.0 25.6 227 22-250 64-292 (440)
69 2xot_A Amphoterin-induced prot 100.0 9.7E-28 3.3E-32 220.4 16.5 229 168-402 21-258 (361)
70 3zyi_A Leucine-rich repeat-con 100.0 2.1E-26 7.1E-31 218.2 24.5 227 22-250 75-303 (452)
71 1z7x_W Ribonuclease inhibitor; 99.9 4.9E-30 1.7E-34 244.0 -1.3 325 23-347 29-412 (461)
72 3oja_A Leucine-rich immune mol 99.9 6.2E-28 2.1E-32 230.0 12.8 226 115-354 32-258 (487)
73 3m19_A Variable lymphocyte rec 99.9 1.6E-26 5.6E-31 201.3 19.4 188 13-202 3-192 (251)
74 1wwl_A Monocyte differentiatio 99.9 4.8E-29 1.6E-33 224.5 1.5 232 89-347 39-288 (312)
75 4fcg_A Uncharacterized protein 99.9 2.1E-26 7.2E-31 208.4 17.3 227 46-293 82-309 (328)
76 2z66_A Variable lymphocyte rec 99.9 8.1E-26 2.8E-30 203.1 20.8 228 22-274 28-261 (306)
77 2wfh_A SLIT homolog 2 protein 99.9 3.3E-26 1.1E-30 190.7 16.8 174 216-395 13-187 (193)
78 3rfs_A Internalin B, repeat mo 99.9 1.9E-25 6.7E-30 196.9 22.3 197 162-362 38-235 (272)
79 1p9a_G Platelet glycoprotein I 99.9 3.4E-25 1.1E-29 196.9 23.8 202 19-226 7-208 (290)
80 1z7x_W Ribonuclease inhibitor; 99.9 7.2E-29 2.5E-33 236.0 -0.1 323 24-346 5-383 (461)
81 1w8a_A SLIT protein; signaling 99.9 9.1E-26 3.1E-30 188.1 17.6 177 216-397 11-189 (192)
82 3e6j_A Variable lymphocyte rec 99.9 2.6E-25 8.9E-30 190.7 21.0 196 191-394 21-226 (229)
83 4fcg_A Uncharacterized protein 99.9 6.7E-26 2.3E-30 205.1 17.6 232 94-345 82-313 (328)
84 1ozn_A Reticulon 4 receptor; N 99.9 6.1E-26 2.1E-30 201.7 16.4 206 21-226 31-238 (285)
85 4ay9_X Follicle-stimulating ho 99.9 2.9E-26 9.8E-31 209.7 13.7 245 72-349 12-261 (350)
86 2xwt_C Thyrotropin receptor; s 99.9 1.5E-25 5.1E-30 193.8 15.3 205 105-343 23-236 (239)
87 3rfs_A Internalin B, repeat mo 99.9 5.3E-25 1.8E-29 194.1 17.6 177 92-272 40-216 (272)
88 2o6s_A Variable lymphocyte rec 99.9 7.6E-25 2.6E-29 185.2 17.1 189 14-213 1-189 (208)
89 1h6u_A Internalin H; cell adhe 99.9 5E-25 1.7E-29 197.7 14.8 211 74-302 24-234 (308)
90 2v9t_B SLIT homolog 2 protein 99.9 6.7E-24 2.3E-28 180.7 18.4 164 11-178 2-165 (220)
91 2xot_A Amphoterin-induced prot 99.9 3.6E-24 1.2E-28 196.6 15.4 187 12-202 10-202 (361)
92 1h6u_A Internalin H; cell adhe 99.9 1.2E-23 4.2E-28 188.6 18.1 210 51-278 25-234 (308)
93 2z62_A TOLL-like receptor 4, v 99.9 3.2E-23 1.1E-27 183.3 19.9 205 22-227 28-238 (276)
94 3goz_A Leucine-rich repeat-con 99.9 3.7E-25 1.3E-29 203.4 5.1 254 50-323 3-298 (362)
95 3goz_A Leucine-rich repeat-con 99.9 4.2E-25 1.4E-29 203.0 5.3 267 74-361 3-311 (362)
96 2v70_A SLIT-2, SLIT homolog 2 99.9 6.3E-23 2.1E-27 174.6 17.3 162 13-178 4-166 (220)
97 4glp_A Monocyte differentiatio 99.9 4.1E-23 1.4E-27 185.6 14.0 135 118-252 92-239 (310)
98 4glp_A Monocyte differentiatio 99.9 4E-23 1.4E-27 185.7 12.7 224 118-346 65-307 (310)
99 4fdw_A Leucine rich hypothetic 99.9 1.6E-21 5.5E-26 180.4 23.4 265 67-344 111-381 (401)
100 4fdw_A Leucine rich hypothetic 99.9 2.6E-21 8.8E-26 179.0 22.8 266 45-323 113-384 (401)
101 3cvr_A Invasion plasmid antige 99.9 1.1E-22 3.7E-27 195.5 13.9 178 94-299 60-244 (571)
102 3sb4_A Hypothetical leucine ri 99.9 1.9E-23 6.6E-28 189.3 8.0 284 46-340 26-328 (329)
103 2o6s_A Variable lymphocyte rec 99.9 4.1E-21 1.4E-25 162.2 21.3 171 192-365 10-181 (208)
104 2ast_B S-phase kinase-associat 99.9 2.2E-23 7.6E-28 189.7 4.1 254 46-329 48-313 (336)
105 2ast_B S-phase kinase-associat 99.9 1.9E-23 6.5E-28 190.2 3.1 244 95-347 49-307 (336)
106 2ca6_A RAN GTPase-activating p 99.9 8E-24 2.7E-28 196.3 0.6 254 89-362 28-333 (386)
107 3g39_A Variable lymphocyte rec 99.9 2.3E-21 8E-26 157.9 15.1 150 238-394 10-166 (170)
108 3e6j_A Variable lymphocyte rec 99.9 7.4E-21 2.5E-25 162.9 18.5 158 16-178 15-172 (229)
109 2o6r_A Variable lymphocyte rec 99.9 1.5E-20 5.2E-25 154.4 17.1 164 215-386 9-173 (177)
110 2ca6_A RAN GTPase-activating p 99.9 3.9E-23 1.3E-27 191.7 0.8 243 63-325 26-319 (386)
111 3sb4_A Hypothetical leucine ri 99.9 6.6E-22 2.3E-26 179.2 8.9 262 44-316 48-328 (329)
112 2r9u_A Variable lymphocyte rec 99.8 1.8E-20 6.2E-25 153.1 14.9 149 239-394 14-172 (174)
113 1h6t_A Internalin B; cell adhe 99.8 2.2E-20 7.5E-25 166.0 15.9 188 74-301 29-216 (291)
114 3cvr_A Invasion plasmid antige 99.8 8.6E-20 2.9E-24 175.5 20.7 186 70-283 60-252 (571)
115 1h6t_A Internalin B; cell adhe 99.8 1.8E-20 6E-25 166.6 13.9 190 47-252 26-215 (291)
116 2wfh_A SLIT homolog 2 protein 99.8 6.7E-20 2.3E-24 152.4 15.8 137 13-154 3-139 (193)
117 2o6r_A Variable lymphocyte rec 99.8 1.5E-19 5E-24 148.5 16.2 138 14-155 1-138 (177)
118 3ogk_B Coronatine-insensitive 99.8 4.4E-22 1.5E-26 195.2 -0.4 126 23-149 113-251 (592)
119 1w8a_A SLIT protein; signaling 99.8 1.8E-19 6.2E-24 149.8 15.3 138 13-154 1-139 (192)
120 1m9s_A Internalin B; cell inva 99.8 8.7E-20 3E-24 177.3 15.0 199 70-284 22-220 (605)
121 1m9s_A Internalin B; cell inva 99.8 1E-19 3.4E-24 176.8 15.2 195 47-257 23-217 (605)
122 4fs7_A Uncharacterized protein 99.8 2E-18 7E-23 160.2 23.2 276 57-343 59-376 (394)
123 3ogk_B Coronatine-insensitive 99.8 6.1E-22 2.1E-26 194.2 -1.4 298 45-345 164-525 (592)
124 2p1m_B Transport inhibitor res 99.8 5.7E-22 1.9E-26 194.5 -3.1 298 45-345 105-518 (594)
125 2p1m_B Transport inhibitor res 99.8 5.9E-22 2E-26 194.3 -3.2 298 45-345 66-493 (594)
126 1xeu_A Internalin C; cellular 99.8 1E-19 3.4E-24 159.2 9.5 148 187-347 39-186 (263)
127 2ifg_A High affinity nerve gro 99.8 1.4E-18 4.8E-23 158.6 14.6 137 240-379 11-149 (347)
128 1xeu_A Internalin C; cellular 99.8 8.1E-19 2.8E-23 153.4 11.4 172 116-302 18-189 (263)
129 4gt6_A Cell surface protein; l 99.8 7.5E-17 2.6E-21 149.6 25.2 287 47-344 66-368 (394)
130 4ezg_A Putative uncharacterize 99.8 1.7E-18 5.8E-23 144.7 11.6 149 189-345 44-193 (197)
131 4ezg_A Putative uncharacterize 99.8 2.9E-18 9.8E-23 143.3 12.1 108 186-297 85-193 (197)
132 4fs7_A Uncharacterized protein 99.8 1E-16 3.5E-21 148.7 22.4 293 33-338 58-393 (394)
133 3g39_A Variable lymphocyte rec 99.7 2.8E-17 9.5E-22 133.6 12.8 115 13-131 2-116 (170)
134 2r9u_A Variable lymphocyte rec 99.7 5.9E-17 2E-21 132.1 13.6 117 12-132 4-120 (174)
135 4gt6_A Cell surface protein; l 99.7 2.4E-15 8.3E-20 139.5 25.2 308 23-344 65-389 (394)
136 3rfe_A Platelet glycoprotein I 99.7 3.3E-17 1.1E-21 126.0 8.4 108 288-398 11-123 (130)
137 4h09_A Hypothetical leucine ri 99.7 6.1E-15 2.1E-19 136.2 24.7 282 46-340 47-340 (379)
138 1dce_A Protein (RAB geranylger 99.7 2.9E-19 1E-23 172.6 -5.6 122 214-340 442-567 (567)
139 1dce_A Protein (RAB geranylger 99.7 1.6E-20 5.6E-25 181.3 -14.6 122 190-316 442-567 (567)
140 2ell_A Acidic leucine-rich nuc 99.7 1.1E-16 3.8E-21 130.1 9.8 137 43-182 22-164 (168)
141 2ell_A Acidic leucine-rich nuc 99.7 1.8E-16 6.1E-21 128.8 10.2 93 233-325 67-163 (168)
142 4h09_A Hypothetical leucine ri 99.6 2.5E-14 8.5E-19 132.0 23.0 267 65-343 42-320 (379)
143 2je0_A Acidic leucine-rich nuc 99.6 4.2E-16 1.4E-20 123.9 8.1 127 213-341 17-148 (149)
144 1a9n_A U2A', U2A'; complex (nu 99.6 5.4E-16 1.8E-20 126.9 8.9 133 209-345 15-152 (176)
145 4b8c_D Glucose-repressible alc 99.6 1.3E-16 4.3E-21 158.9 5.3 178 158-345 217-403 (727)
146 4b8c_D Glucose-repressible alc 99.6 1.4E-16 4.8E-21 158.6 5.4 191 45-247 173-369 (727)
147 2je0_A Acidic leucine-rich nuc 99.6 1.2E-15 4.2E-20 121.2 9.7 125 165-292 17-147 (149)
148 1a9n_A U2A', U2A'; complex (nu 99.6 2.6E-15 8.8E-20 122.9 9.8 135 161-298 15-153 (176)
149 2ifg_A High affinity nerve gro 99.5 3.7E-14 1.3E-18 129.3 12.6 114 14-131 1-117 (347)
150 1ds9_A Outer arm dynein; leuci 99.5 5.5E-17 1.9E-21 135.6 -9.4 113 232-349 43-156 (198)
151 1ds9_A Outer arm dynein; leuci 99.4 3.1E-15 1.1E-19 124.9 -6.0 152 188-346 17-185 (198)
152 3un9_A NLR family member X1; l 99.3 3.8E-14 1.3E-18 129.7 -4.3 116 214-329 127-259 (372)
153 3un9_A NLR family member X1; l 99.3 1.3E-13 4.4E-18 126.2 -2.0 158 189-346 72-252 (372)
154 2ra8_A Uncharacterized protein 98.9 8.8E-10 3E-14 100.0 4.1 64 260-323 251-321 (362)
155 2ra8_A Uncharacterized protein 98.7 1.1E-08 3.8E-13 92.8 3.8 133 209-345 168-319 (362)
156 3rfe_A Platelet glycoprotein I 98.6 6.3E-08 2.1E-12 74.0 7.2 66 13-82 1-68 (130)
157 1io0_A Tropomodulin; LRR prote 98.5 3E-08 1E-12 81.2 1.6 114 233-346 32-164 (185)
158 1io0_A Tropomodulin; LRR prote 98.4 6.7E-08 2.3E-12 79.1 1.9 115 209-323 32-165 (185)
159 3e4g_A ATP synthase subunit S, 98.4 2.3E-07 7.9E-12 74.0 4.0 93 36-128 52-150 (176)
160 3e4g_A ATP synthase subunit S, 98.3 1.5E-07 5.3E-12 75.1 1.8 86 262-347 62-153 (176)
161 3rw6_A Nuclear RNA export fact 98.2 8.1E-07 2.8E-11 76.4 4.1 41 260-300 169-211 (267)
162 3rw6_A Nuclear RNA export fact 98.0 2.5E-06 8.5E-11 73.4 3.9 63 235-298 168-233 (267)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00027 9.1E-09 57.4 5.2 111 235-345 39-169 (197)
164 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00035 1.2E-08 56.8 4.3 114 209-322 37-170 (197)
165 2lz0_A Uncharacterized protein 93.6 0.2 6.8E-06 35.5 6.4 43 106-149 9-51 (100)
166 2lz0_A Uncharacterized protein 92.8 0.27 9.3E-06 34.8 6.0 47 56-103 7-53 (100)
167 4b2u_A S67; toxin, ICK; NMR {S 21.8 47 0.0016 17.0 1.4 13 19-31 23-35 (36)
No 1
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.4e-52 Score=396.18 Aligned_cols=372 Identities=28% Similarity=0.417 Sum_probs=343.4
Q ss_pred CCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCC
Q psy12291 13 CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIST 92 (404)
Q Consensus 13 ~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 92 (404)
.||..|.|....+.++|.+.+++.+|.. ++.++++|++++|.++.+.+..|.++++|++|++++|.+..+.+..|.++
T Consensus 2 ~Cp~~C~C~~~~~~v~c~~~~l~~ip~~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 79 (477)
T 2id5_A 2 GCPPRCECSAQDRAVLCHRKRFVAVPEG--IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL 79 (477)
T ss_dssp CCSTTCEEETTTTEEECCSCCCSSCCSC--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCCCeECCCCCEEEeCCCCcCcCCCC--CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCC
Confidence 5899999998889999999999999986 78899999999999999999999999999999999999999988889999
Q ss_pred CCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEec
Q psy12291 93 INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKL 172 (404)
Q Consensus 93 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 172 (404)
++|++|++++|.++.++...|.++++|++|++++|.+..+.+..|..+++|+.|++++|.+..+.+..|.++++|++|++
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence 99999999999999999988999999999999999999998888999999999999999999999889999999999999
Q ss_pred cCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCccc
Q psy12291 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252 (404)
Q Consensus 173 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 252 (404)
++|.++.+++..|..+++|+.|++++|.+..+.+..+..+++|+.|++++|......+.......+|+.|++++|.+..+
T Consensus 160 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp ESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred CCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence 99999999988889999999999999999999888999999999999999876554434444556999999999999999
Q ss_pred CcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCC
Q psy12291 253 PAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLL 332 (404)
Q Consensus 253 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 332 (404)
+...+..+++|+.|++++|.++.++...|..+++|++|++++|+++.+.+..|..+++|+.|+|++|+++.+++..+..+
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence 98789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEccCCccccccCcHHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCCCC
Q psy12291 333 PNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSF 388 (404)
Q Consensus 333 ~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~~~ 388 (404)
++|+.|++++|||.|||.+.|+.+|... ..+.....+|++|..++|+.+.++..
T Consensus 320 ~~L~~L~l~~N~l~c~c~~~~~~~~~~~--~~~~~~~~~C~~p~~~~g~~l~~~~~ 373 (477)
T 2id5_A 320 GNLETLILDSNPLACDCRLLWVFRRRWR--LNFNRQQPTCATPEFVQGKEFKDFPD 373 (477)
T ss_dssp GGCCEEECCSSCEECSGGGHHHHTTTTS--SCCTTCCCBEEESGGGTTCBGGGSCS
T ss_pred cccCEEEccCCCccCccchHhHHhhhhc--cccCccCceeCCchHHcCCchhhCcc
Confidence 9999999999999999999988876532 22333478999999999999998764
No 2
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.8e-50 Score=395.69 Aligned_cols=377 Identities=25% Similarity=0.381 Sum_probs=303.7
Q ss_pred CCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCC
Q psy12291 15 EGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTIN 94 (404)
Q Consensus 15 ~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 94 (404)
+..|.|......++|.+.+++.||.+ +|.++++||+++|+|+.+.+.+|.++++|++|+|++|+|+.+++++|.++++
T Consensus 24 ~~~c~~~~~~~~~~c~~~~l~~vP~~--lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~ 101 (635)
T 4g8a_A 24 WEPCVEVVPNITYQCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 101 (635)
T ss_dssp -CCSEEEETTTEEECTTSCCSSCCSS--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCCccccCCCCEEECCCCCcCccCCC--CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCC
Confidence 35688877778899999999999987 8999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccc-cccccCCccCcEEecc
Q psy12291 95 LSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQ 173 (404)
Q Consensus 95 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~ 173 (404)
|++|+|++|+++.+++..|.++++|++|++++|.++.++...|+++++|++|++++|.+..+. +..+..+++|++|+++
T Consensus 102 L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 102 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp CCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 999999999999999999999999999999999999999988999999999999999988754 4567788899999998
Q ss_pred CCCCCCCCCCccCC------------------------------------------------------------------
Q psy12291 174 SNRINQLPPGIFDD------------------------------------------------------------------ 187 (404)
Q Consensus 174 ~~~l~~~~~~~~~~------------------------------------------------------------------ 187 (404)
+|.++.+.+..|..
T Consensus 182 ~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 261 (635)
T 4g8a_A 182 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 261 (635)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred CccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence 88765432211110
Q ss_pred --------------------------------------------------------------------------------
Q psy12291 188 -------------------------------------------------------------------------------- 187 (404)
Q Consensus 188 -------------------------------------------------------------------------------- 187 (404)
T Consensus 262 ~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 341 (635)
T 4g8a_A 262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 341 (635)
T ss_dssp TTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEES
T ss_pred ccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhccccccc
Confidence
Q ss_pred ----------------------------CCCCCeEecCCCcCccc-----------------------------------
Q psy12291 188 ----------------------------LKYLDFLSLRNNRLSFI----------------------------------- 204 (404)
Q Consensus 188 ----------------------------l~~L~~L~l~~~~~~~~----------------------------------- 204 (404)
+++|+.+++++|.+...
T Consensus 342 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~ 421 (635)
T 4g8a_A 342 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQ 421 (635)
T ss_dssp SCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTT
T ss_pred CcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccccccc
Confidence 01122222222111000
Q ss_pred ---------------CCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCC-cccCcccccCCCCCcEEEC
Q psy12291 205 ---------------RPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYI-ETIPAGSFANLQSLEKLFL 268 (404)
Q Consensus 205 ---------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~~~~~~~~~l~~L~~L~L 268 (404)
....+..+++++.++++.|.+....+..+..+++|+.|++++|.+ ..+.+..+..+++|+.|+|
T Consensus 422 L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~L 501 (635)
T 4g8a_A 422 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501 (635)
T ss_dssp CCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEEC
Confidence 001112223333333344444444444455667778888888764 3445557888999999999
Q ss_pred cCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCC-CCCcEEEccCCcccc
Q psy12291 269 YSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLL-PNLITLKLAKNPWHC 347 (404)
Q Consensus 269 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~l~l~~Np~~C 347 (404)
++|+++.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+++++++..+..+ ++|+.|++++|||.|
T Consensus 502 s~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999989888 689999999999999
Q ss_pred ccCcHHHHHHHHhccCcccCC-CCeeCCCCCCCCCcccCCCCcCCCCcc
Q psy12291 348 DCAILYMARWLRANRRKVWDS-KPTCRGPGNLGGKSVEDMSFDDLCEGQ 395 (404)
Q Consensus 348 ~c~~~~~~~~~~~~~~~~~~~-~~~C~~p~~l~~~~l~~~~~~~~C~~~ 395 (404)
||++.||.+|+++....+.+. .++|++|+.++|+++.+++. .|+-.
T Consensus 582 ~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~~~--~C~~~ 628 (635)
T 4g8a_A 582 TCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNI--TCQMT 628 (635)
T ss_dssp SGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGCCC--CC---
T ss_pred cCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeeecc--CCCCC
Confidence 999999999999877665443 78999999999999999964 47643
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.2e-47 Score=373.35 Aligned_cols=373 Identities=25% Similarity=0.361 Sum_probs=270.9
Q ss_pred CceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCC
Q psy12291 17 PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLS 96 (404)
Q Consensus 17 ~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 96 (404)
.|.|......++|.+.+++.+|.. ++.++++|++++|.++.+.+.+|.++++|++|++++|.+.++++..|.++++|+
T Consensus 6 ~c~~~~~~~~~~c~~~~l~~ip~~--~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~ 83 (606)
T 3vq2_A 6 PCIEVVPNITYQCMDQKLSKVPDD--IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83 (606)
T ss_dssp CCEEEETTTEEECTTSCCSSCCTT--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CceecCCCCceEccCCCcccCCCC--CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence 477766678999999999999986 778999999999999999888899999999999999999999888889999999
Q ss_pred EEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccc-cccccCCccCcEEeccCC
Q psy12291 97 TMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQSN 175 (404)
Q Consensus 97 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~ 175 (404)
+|++++|.++.+++..|.++++|++|++++|.++.+++..++++++|++|++++|.+.... +..+.++++|++|++++|
T Consensus 84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred EeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 9999999999887777889999999999999888877666777778888888777776533 455666666666666665
Q ss_pred CCCCCCCCc-----------------------------------------------------------------------
Q psy12291 176 RINQLPPGI----------------------------------------------------------------------- 184 (404)
Q Consensus 176 ~l~~~~~~~----------------------------------------------------------------------- 184 (404)
.++.+++..
T Consensus 164 ~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243 (606)
T ss_dssp CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred cceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence 544322110
Q ss_pred --------------------------------------------------------------------------------
Q psy12291 185 -------------------------------------------------------------------------------- 184 (404)
Q Consensus 185 -------------------------------------------------------------------------------- 184 (404)
T Consensus 244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp 323 (606)
T 3vq2_A 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP 323 (606)
T ss_dssp SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC
T ss_pred CCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccc
Confidence
Q ss_pred ----------------------cCCCCCCCeEecCCCcCc----------------------------------------
Q psy12291 185 ----------------------FDDLKYLDFLSLRNNRLS---------------------------------------- 202 (404)
Q Consensus 185 ----------------------~~~l~~L~~L~l~~~~~~---------------------------------------- 202 (404)
+..+++|++|++++|.++
T Consensus 324 ~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 324 TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH 403 (606)
T ss_dssp CCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCE
T ss_pred cCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCe
Confidence 011223334444433322
Q ss_pred ---------ccCC-CccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcc-cCcccccCCCCCcEEECcCC
Q psy12291 203 ---------FIRP-GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIET-IPAGSFANLQSLEKLFLYSN 271 (404)
Q Consensus 203 ---------~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~L~~n 271 (404)
...+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.. +.+..+..+++|+.|++++|
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence 1111 233344445555555555554444556666677777777776665 23446777888888888888
Q ss_pred CccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCC-CCcEEEccCCccccccC
Q psy12291 272 NIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLP-NLITLKLAKNPWHCDCA 350 (404)
Q Consensus 272 ~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~l~l~~Np~~C~c~ 350 (404)
.++.+.+..|..+++|++|++++|+++.+.+..+..+++|+.|++++|+++.++.. +..++ +|+.+++++|||.|+|+
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCCCCSST
T ss_pred cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCcccCCc
Confidence 88888888888899999999999999998888899999999999999999988776 77776 69999999999999999
Q ss_pred cHHHHHHHHhccCcccCC-CCeeCCCCCCCCCcccCCCCcCCCC
Q psy12291 351 ILYMARWLRANRRKVWDS-KPTCRGPGNLGGKSVEDMSFDDLCE 393 (404)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~-~~~C~~p~~l~~~~l~~~~~~~~C~ 393 (404)
+.|+.+|++.....+.+. ..+|++|+.++|+++.++.... |+
T Consensus 563 ~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~~-c~ 605 (606)
T 3vq2_A 563 HQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNST-CY 605 (606)
T ss_dssp THHHHTTTTTSSSSBSSGGGCCCC--------------------
T ss_pred cHHHHHHHHcCcccccCCccceeCCChHhCCCEeeeccccc-CC
Confidence 999999998876655443 7899999999999999998654 64
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-46 Score=357.95 Aligned_cols=358 Identities=28% Similarity=0.427 Sum_probs=309.9
Q ss_pred CCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCc-ccCcccccC
Q psy12291 13 CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFIS 91 (404)
Q Consensus 13 ~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~ 91 (404)
-|+..|.|. ...++|.+.+++.+|. ++.++++|++++|.+..+.+..|.++++|++|++++|.+. .+++..|..
T Consensus 3 p~~~~c~~~--~~~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~ 77 (455)
T 3v47_A 3 PGTSECSVI--GYNAICINRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG 77 (455)
T ss_dssp ----CCEEE--TTEEECCSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTT
T ss_pred CccceeEEE--ccccCcCCCCcccCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccc
Confidence 467778876 4679999999999997 7789999999999999998899999999999999999987 787888999
Q ss_pred CCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCc--CCCccCCCCCCCCEEECCCCccccccccc-ccCCccCc
Q psy12291 92 TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES--LPANVFHDLISLEELDLSQNVLTSIQYGT-FSGMYSLK 168 (404)
Q Consensus 92 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-l~~l~~L~ 168 (404)
+++|++|++++|.++.+++..|.++++|++|++++|.++. .....|..+++|++|++++|.+..+.+.. +.++++|+
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 9999999999999999877779999999999999999986 34455888999999999999999887665 78999999
Q ss_pred EEeccCCCCCCCCCCccCCC----------------------------------CCCCeEecCCCcCcccCCCcc-----
Q psy12291 169 RLKLQSNRINQLPPGIFDDL----------------------------------KYLDFLSLRNNRLSFIRPGLF----- 209 (404)
Q Consensus 169 ~L~l~~~~l~~~~~~~~~~l----------------------------------~~L~~L~l~~~~~~~~~~~~~----- 209 (404)
+|++++|.++.+.+..+..+ ++|++|++++|.++...+..+
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 237 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence 99999999988766544433 568888888886643211111
Q ss_pred --------------------------------C--CCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcc
Q psy12291 210 --------------------------------N--YFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAG 255 (404)
Q Consensus 210 --------------------------------~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 255 (404)
. ..++|+.|++++|.+....+..+..+++|++|++++|.+..+++.
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 317 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence 0 125799999999999988888899999999999999999999887
Q ss_pred cccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCC
Q psy12291 256 SFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335 (404)
Q Consensus 256 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 335 (404)
.+..+++|+.|++++|.++.+.+..|..+++|++|++++|+++.+.+..+..+++|++|++++|+++++++..+..+++|
T Consensus 318 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 89999999999999999999988899999999999999999999989999999999999999999999999888999999
Q ss_pred cEEEccCCccccccC-cHHHHHHHHhccCcccCCCCeeCCCC
Q psy12291 336 ITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGPG 376 (404)
Q Consensus 336 ~~l~l~~Np~~C~c~-~~~~~~~~~~~~~~~~~~~~~C~~p~ 376 (404)
+.|++++||+.|+|+ +.|+.+|+....... .....|++|+
T Consensus 398 ~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~-~~~~~c~~~~ 438 (455)
T 3v47_A 398 QKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE-QGSAKCSGSG 438 (455)
T ss_dssp CEEECCSSCBCCCTTTTHHHHHHHHHTTTTE-ESCCBBTTTC
T ss_pred cEEEccCCCcccCCCcchHHHHHHHhCccce-eeeeeecCCC
Confidence 999999999999998 778899998765543 2357898864
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.2e-45 Score=357.71 Aligned_cols=341 Identities=25% Similarity=0.375 Sum_probs=309.5
Q ss_pred CeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEcc
Q psy12291 46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLS 125 (404)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 125 (404)
.++.|++++|.+..+.+..|.++++|++|++++|+++.+|.. +..+++|++|++++|.++.+++..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 578888888899888888899999999999999999988875 5889999999999999999877778999999999999
Q ss_pred CCCCC-cCCCccCCCCCCCCEEECCCCcccccc--cccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCc
Q psy12291 126 YNAIE-SLPANVFHDLISLEELDLSQNVLTSIQ--YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202 (404)
Q Consensus 126 ~n~l~-~~~~~~~~~l~~L~~L~l~~~~l~~~~--~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 202 (404)
+|.+. .++...+..+++|+.|++++|.+.... +..+..+++|++|++++|.+..+++..|..+++|++|++++|.+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 99887 677777889999999999999998876 667889999999999999999998888999999999999999998
Q ss_pred ccCC-CccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCccc--C-cccccCCCCCcEEECcCCCcccccc
Q psy12291 203 FIRP-GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI--P-AGSFANLQSLEKLFLYSNNIQELHA 278 (404)
Q Consensus 203 ~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~--~-~~~~~~l~~L~~L~L~~n~l~~~~~ 278 (404)
...+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+... + ...+..+++|+.|++++|.++.+.+
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 7654 4488999999999999999998888899999999999999998762 2 2468889999999999999999988
Q ss_pred ccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHHHHHHH
Q psy12291 279 GTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWL 358 (404)
Q Consensus 279 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~~~~~ 358 (404)
..|..+++|++|++++|+++.+.+..+..++.| .|++++|+++++++..+..+++|+.+++++|||.|+|...|+..|+
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~ 572 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY 572 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHH
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHH
Confidence 899999999999999999999999999999999 9999999999999988999999999999999999999999999999
Q ss_pred HhccCcccCC-CCeeCCCCCCCCCcccCCCC
Q psy12291 359 RANRRKVWDS-KPTCRGPGNLGGKSVEDMSF 388 (404)
Q Consensus 359 ~~~~~~~~~~-~~~C~~p~~l~~~~l~~~~~ 388 (404)
+.....+... ..+|++|+.++|+++.+++.
T Consensus 573 ~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~ 603 (606)
T 3t6q_A 573 KENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603 (606)
T ss_dssp HHCGGGEECGGGCBEEESGGGTTCBGGGCCC
T ss_pred HhCcccccCCCCCeeCCchHhCCCeeeeeec
Confidence 9876555443 78999999999999999964
No 6
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.1e-44 Score=350.04 Aligned_cols=364 Identities=21% Similarity=0.311 Sum_probs=286.9
Q ss_pred CCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCC
Q psy12291 16 GPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINL 95 (404)
Q Consensus 16 ~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L 95 (404)
..|.|... +.++|.+++++.+|.. ++.++++|++++|.+..+.+.+|.++++|++|++++|+++++++..|..+++|
T Consensus 26 ~~~~~~~~-~~l~ls~~~L~~ip~~--~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 26 TPFSNELE-SMVDYSNRNLTHVPKD--LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp -------C-CEEECTTSCCCSCCTT--SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred cccccCCC-cEEEcCCCCCccCCCC--CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence 34555554 8999999999999986 66899999999999999999999999999999999999999998889999999
Q ss_pred CEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCC-CccCCCCCCCCEEECCCCcccccccccccCC----------
Q psy12291 96 STMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP-ANVFHDLISLEELDLSQNVLTSIQYGTFSGM---------- 164 (404)
Q Consensus 96 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l---------- 164 (404)
++|++++|.++.+|.. .+++|++|++++|.++.++ +..|.++++|++|++++|.+.......+..+
T Consensus 103 ~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 103 EYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp CEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEES
T ss_pred CEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecc
Confidence 9999999999999875 7999999999999999876 3678889999999999987754221111111
Q ss_pred -----------------------------------------c--------------------------------------
Q psy12291 165 -----------------------------------------Y-------------------------------------- 165 (404)
Q Consensus 165 -----------------------------------------~-------------------------------------- 165 (404)
+
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 0
Q ss_pred -----------------cCcEEeccCCCCC-CCCCCcc------------------------------------------
Q psy12291 166 -----------------SLKRLKLQSNRIN-QLPPGIF------------------------------------------ 185 (404)
Q Consensus 166 -----------------~L~~L~l~~~~l~-~~~~~~~------------------------------------------ 185 (404)
+|++|++++|.++ .++...|
T Consensus 260 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence 2333333333333 2222211
Q ss_pred ----------CCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCCh--hhhcCCCCCcEEECCCCCCcc-c
Q psy12291 186 ----------DDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNG--DEFSQLTSLKELHLGQNYIET-I 252 (404)
Q Consensus 186 ----------~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~-~ 252 (404)
..+++|++|++++|.++...+..+..+++|++|++++|.+..++. ..+..+++|++|++++|.+.. +
T Consensus 340 ~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp SSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred CCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 556778888888888887667778888888888888888887653 457788888888888888887 7
Q ss_pred CcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCC
Q psy12291 253 PAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLL 332 (404)
Q Consensus 253 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 332 (404)
+...+..+++|+.|++++|.+++..+..+. ++|++|++++|+++.++...+ .+++|++|++++|+++.++...+..+
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l 496 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRL 496 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTC
T ss_pred ChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcC
Confidence 776777888888888888888754433322 699999999999998877666 89999999999999999988778899
Q ss_pred CCCcEEEccCCccccccCcHHHHH-HHHhccCccc-------CCCCeeCCCCCCCCCcccCCCCcCCC
Q psy12291 333 PNLITLKLAKNPWHCDCAILYMAR-WLRANRRKVW-------DSKPTCRGPGNLGGKSVEDMSFDDLC 392 (404)
Q Consensus 333 ~~L~~l~l~~Np~~C~c~~~~~~~-~~~~~~~~~~-------~~~~~C~~p~~l~~~~l~~~~~~~~C 392 (404)
++|+.|++++|||.|+|++.|+.+ |.......+. ....+|++ +|+++.++...+.|
T Consensus 497 ~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~----~g~~l~~~~c~~~~ 560 (562)
T 3a79_B 497 TSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG----SGKPVRSIICPTLV 560 (562)
T ss_dssp TTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS----SCCCTTTCCCC---
T ss_pred CCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC----CCcEeeeecCCCCC
Confidence 999999999999999999999976 9877665543 23678988 78999988655544
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.3e-44 Score=359.18 Aligned_cols=374 Identities=24% Similarity=0.334 Sum_probs=235.1
Q ss_pred CceEEecCCCCCccCCCC-CCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCc---------ccCcccccCCC
Q psy12291 24 IHTLSCWKQDMEELPFDQ-IIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS---------ELPGKLFISTI 93 (404)
Q Consensus 24 ~~~~~~~~~~l~~ip~~~-~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~---------~~~~~~~~~~~ 93 (404)
.+.++..++.++.++... ....++++|++++|.+..+.+..|.++++|+.|+++++... .+....|..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 444555555554444321 12234555555555555444444444444444444433211 12222345555
Q ss_pred CCCEEeCCCCCCcccCccccCCCCCCcEEEccCC----------------------------CCCcCCCccCCCCCCCCE
Q psy12291 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN----------------------------AIESLPANVFHDLISLEE 145 (404)
Q Consensus 94 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n----------------------------~l~~~~~~~~~~l~~L~~ 145 (404)
+|++|++++|.+..+++..|.++++|++|++++| .++.+.+..|..+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 6666666666666555555555555555555444 333333444555556666
Q ss_pred EECCCCcccc-cccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCc--ccCCCccCCCCCCCEEECCC
Q psy12291 146 LDLSQNVLTS-IQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS--FIRPGLFNYFKHLTFLELSE 222 (404)
Q Consensus 146 L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~ 222 (404)
|++++|.+.. +....+.++++|++|++++|.+..+.+..|..+++|+.|++++|.+. ...+..+..+++|++|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 6666665543 33345555666666666666666555556666666666666666654 33456678889999999999
Q ss_pred CcCCCCChhhhcCCCCCcEEECCCCCCcccCc--------ccccCCCCCcEEECcCCCccccccccccCCCCCCeeeccc
Q psy12291 223 NWISSLNGDEFSQLTSLKELHLGQNYIETIPA--------GSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN 294 (404)
Q Consensus 223 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 294 (404)
|.+..+++..+..+++|++|++++|.+..++. ..+..+++|+.|++++|.++.++...|.++++|++|++++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence 99999888889999999999999999887633 2367889999999999999999888899999999999999
Q ss_pred ccccccCccccCCCCCCcEEeCCCCCCcccCccccc-CCCCCcEEEccCCccccccCc-HHHHHHHHhccCcccC--CCC
Q psy12291 295 NLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLS-LLPNLITLKLAKNPWHCDCAI-LYMARWLRANRRKVWD--SKP 370 (404)
Q Consensus 295 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~l~l~~Np~~C~c~~-~~~~~~~~~~~~~~~~--~~~ 370 (404)
|+++.+++..|..+++|+.|++++|+++++++..+. .+++|+.+++++|||.|||+. .||..|+......+.+ ..+
T Consensus 570 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~ 649 (680)
T 1ziw_A 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC-----------
T ss_pred CCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCcccccccCCc
Confidence 999999999999999999999999999999988777 789999999999999999996 8999998766554433 367
Q ss_pred eeCCCCCCCCCcccCCCCcCCCCcccc
Q psy12291 371 TCRGPGNLGGKSVEDMSFDDLCEGQWA 397 (404)
Q Consensus 371 ~C~~p~~l~~~~l~~~~~~~~C~~~~~ 397 (404)
+|++|+.++|+++.+++....|+.+..
T Consensus 650 ~C~~p~~~~g~~l~~~~~~~~~~~~~~ 676 (680)
T 1ziw_A 650 LCNTPPHYHGFPVRLFDTSSCKDSAHH 676 (680)
T ss_dssp ---------------------------
T ss_pred EECCchHHCCCcccccChhhcCCCccC
Confidence 999999999999999998876554443
No 8
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=1.8e-43 Score=334.31 Aligned_cols=312 Identities=27% Similarity=0.541 Sum_probs=227.1
Q ss_pred CCCCCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccc
Q psy12291 10 WYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLF 89 (404)
Q Consensus 10 w~~~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 89 (404)
....||..|.|......++|.+.+++.+|.. ++.+++.|++++|++..+.+..|.++++|++|+|++|.+..++...|
T Consensus 31 ~~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~ 108 (440)
T 3zyj_A 31 SAQTCPSVCSCSNQFSKVICVRKNLREVPDG--ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF 108 (440)
T ss_dssp --CCCCSSSEECTTSCEEECCSCCCSSCCSC--CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGG
T ss_pred ccccCCCCCEeCCCCCEEEeCCCCcCcCCCC--CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhc
Confidence 4457899999998889999999999999986 77889999999999988888888888888888888888888887777
Q ss_pred cCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcE
Q psy12291 90 ISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKR 169 (404)
Q Consensus 90 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~ 169 (404)
..+++|++|++++|.++.+++..|..+++|++|++++|.++.++...|..+++|+.|++++|
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~------------------ 170 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL------------------ 170 (440)
T ss_dssp TTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC------------------
T ss_pred cCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC------------------
Confidence 88888888888888877777766666677777776666666655555555555555554432
Q ss_pred EeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCC
Q psy12291 170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYI 249 (404)
Q Consensus 170 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 249 (404)
+.+..++...|..+++|++|+++ +|.+
T Consensus 171 -----~~l~~i~~~~~~~l~~L~~L~L~------------------------------------------------~n~l 197 (440)
T 3zyj_A 171 -----KRLSYISEGAFEGLSNLRYLNLA------------------------------------------------MCNL 197 (440)
T ss_dssp -----TTCCEECTTTTTTCSSCCEEECT------------------------------------------------TSCC
T ss_pred -----CCcceeCcchhhcccccCeecCC------------------------------------------------CCcC
Confidence 11222222222323333333333 2222
Q ss_pred cccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccc
Q psy12291 250 ETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSL 329 (404)
Q Consensus 250 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 329 (404)
..++. +..+++|+.|+|++|.++.+.+..|.++++|++|++++|+++.+.+..|..+++|+.|+|++|+++.++...+
T Consensus 198 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 198 REIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp SSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred ccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 22221 3445566666666666666666667777777777777788877777788888899999999999999888888
Q ss_pred cCCCCCcEEEccCCccccccCcHHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCCCCcCC-CCccc
Q psy12291 330 SLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL-CEGQW 396 (404)
Q Consensus 330 ~~l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~~~~~~-C~~~~ 396 (404)
..+++|+.|+|++|||.|||.+.|+..|++...........+|++|+.++|+.+.+++...+ |..+.
T Consensus 276 ~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~C~~P~ 343 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPV 343 (440)
T ss_dssp SSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----CCSCCCCCC
T ss_pred ccccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhhhccCCCCc
Confidence 99999999999999999999999999999876443333468899999999999999987776 86543
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-43 Score=344.28 Aligned_cols=357 Identities=29% Similarity=0.427 Sum_probs=281.7
Q ss_pred CceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCC
Q psy12291 17 PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLS 96 (404)
Q Consensus 17 ~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 96 (404)
.|.|......++|.+.+++.+|.. +|.++++|++++|.++.+.+.+|.++++|++|++++|++.++++..|.++++|+
T Consensus 2 ~c~~~~~~~~~~c~~~~l~~ip~~--l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~ 79 (570)
T 2z63_A 2 PCVEVVPNITYQCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79 (570)
T ss_dssp CSEEEETTTEEECCSSCCSSCCSS--SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CccccCCCcEEEeCCCCccccCCC--ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCC
Confidence 577877788999999999999985 788999999999999999888999999999999999999999988899999999
Q ss_pred EEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccc-cccccCCccCcEEeccCC
Q psy12291 97 TMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQSN 175 (404)
Q Consensus 97 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~ 175 (404)
+|++++|.++.+++..|.++++|++|++++|.++.++...+.++++|++|++++|.+..+. +..+.++++|++|++++|
T Consensus 80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred EEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence 9999999999988878888999999999998888887766778888888888888777643 456666777777777666
Q ss_pred CCCCCCCCc-----------------------------------------------------------------------
Q psy12291 176 RINQLPPGI----------------------------------------------------------------------- 184 (404)
Q Consensus 176 ~l~~~~~~~----------------------------------------------------------------------- 184 (404)
.++.+++..
T Consensus 160 ~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred ccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 543321110
Q ss_pred --------------------------------------c-----------------------------------------
Q psy12291 185 --------------------------------------F----------------------------------------- 185 (404)
Q Consensus 185 --------------------------------------~----------------------------------------- 185 (404)
+
T Consensus 240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l 319 (570)
T 2z63_A 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319 (570)
T ss_dssp CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSC
T ss_pred chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCccccc
Confidence 0
Q ss_pred ------------------------CCCCCCCeEecCCCcCcccC--CCc-----------------------cCCCCCCC
Q psy12291 186 ------------------------DDLKYLDFLSLRNNRLSFIR--PGL-----------------------FNYFKHLT 216 (404)
Q Consensus 186 ------------------------~~l~~L~~L~l~~~~~~~~~--~~~-----------------------~~~l~~L~ 216 (404)
..+++|++|++++|.++... +.. +..+++|+
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~ 399 (570)
T 2z63_A 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399 (570)
T ss_dssp CBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCC
Confidence 11233444444444333221 111 33445555
Q ss_pred EEECCCCcCCCCCh-hhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCcc-ccccccccCCCCCCeeeccc
Q psy12291 217 FLELSENWISSLNG-DEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQ-ELHAGTFAGLTNLTALFLNN 294 (404)
Q Consensus 217 ~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~l~~ 294 (404)
.|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. ...+..+..+++|++|++++
T Consensus 400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479 (570)
T ss_dssp EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC
Confidence 55665555555433 35667788888888888887777667888899999999999887 33456788899999999999
Q ss_pred ccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHHHH-HHHHhccCcccCCCCeeC
Q psy12291 295 NLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMA-RWLRANRRKVWDSKPTCR 373 (404)
Q Consensus 295 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~~-~~~~~~~~~~~~~~~~C~ 373 (404)
|+++.+.+..+..+++|++|++++|+++++++..+..+++|+.|++++||+.|+|+..|+. .|+......+.+.. .|+
T Consensus 480 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~-~C~ 558 (570)
T 2z63_A 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCS 558 (570)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCC-BBT
T ss_pred CccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCch-hhC
Confidence 9999998889999999999999999999999888999999999999999999999999888 99998766655444 999
Q ss_pred CCC
Q psy12291 374 GPG 376 (404)
Q Consensus 374 ~p~ 376 (404)
+|+
T Consensus 559 ~~~ 561 (570)
T 2z63_A 559 GSG 561 (570)
T ss_dssp TTC
T ss_pred CCC
Confidence 983
No 10
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=7.2e-43 Score=331.29 Aligned_cols=312 Identities=29% Similarity=0.543 Sum_probs=230.1
Q ss_pred CCCCCCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCccc
Q psy12291 9 SWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL 88 (404)
Q Consensus 9 ~w~~~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 88 (404)
++...||..|.|......++|.+.+++.+|.. ++.++++|++++|++..+.+..|.++++|+.|++++|.+..+++..
T Consensus 41 ~~~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 118 (452)
T 3zyi_A 41 AGPQNCPSVCSCSNQFSKVVCTRRGLSEVPQG--IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA 118 (452)
T ss_dssp ---CCCCTTSEECSSSCEEECCSSCCSSCCSC--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred CCcCCCCCCCEECCCCcEEEECCCCcCccCCC--CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh
Confidence 34558899999998889999999999999976 7788999999999999888888888888888888888888888777
Q ss_pred ccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCc
Q psy12291 89 FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK 168 (404)
Q Consensus 89 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 168 (404)
|.++++|++|++++|.++.+++..|.++++|++|++++|.++.++...|..+++|+.|++++|
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~----------------- 181 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL----------------- 181 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC-----------------
T ss_pred ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC-----------------
Confidence 888888888888888888887777777777777777777777666655666666666655542
Q ss_pred EEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCC
Q psy12291 169 RLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY 248 (404)
Q Consensus 169 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 248 (404)
+.+..++...|..+++|++|++++|.
T Consensus 182 ------~~l~~i~~~~~~~l~~L~~L~L~~n~------------------------------------------------ 207 (452)
T 3zyi_A 182 ------KKLEYISEGAFEGLFNLKYLNLGMCN------------------------------------------------ 207 (452)
T ss_dssp ------TTCCEECTTTTTTCTTCCEEECTTSC------------------------------------------------
T ss_pred ------CCccccChhhccCCCCCCEEECCCCc------------------------------------------------
Confidence 12222222223333333333333332
Q ss_pred CcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCccc
Q psy12291 249 IETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDS 328 (404)
Q Consensus 249 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 328 (404)
+..++. +..+++|+.|++++|.++.+.+..|.++++|++|++++|+++.+.+..|..+++|+.|+|++|+++.++...
T Consensus 208 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 208 IKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp CSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred cccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 222211 334455556666666666665666666777777777777777777777788888888888888888888888
Q ss_pred ccCCCCCcEEEccCCccccccCcHHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCCCCcCC-CCcc
Q psy12291 329 LSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL-CEGQ 395 (404)
Q Consensus 329 ~~~l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~~~~~~-C~~~ 395 (404)
+..+++|+.|++++|||.|||.+.|+..|+++..........+|++|+.++|+.+.+++...+ |..+
T Consensus 286 ~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~P 353 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAP 353 (452)
T ss_dssp STTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSCCGGGCCCCCC
T ss_pred hccccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhccchhhccchhhhcccCc
Confidence 889999999999999999999999999999876443323367999999999999999987765 8654
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-42 Score=354.01 Aligned_cols=369 Identities=26% Similarity=0.394 Sum_probs=225.5
Q ss_pred CceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCC-cCcccCcccccCCCCCCEEeCCC
Q psy12291 24 IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKN-HLSELPGKLFISTINLSTMDLSQ 102 (404)
Q Consensus 24 ~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~ 102 (404)
...++|.+.+++.+|. .|.++++|++++|.|+.+.+.+|.++++|++|++++| .+..+++..|.++++|++|++++
T Consensus 6 ~~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp TEEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred ceEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 4688999999999986 7778999999998888877666777777777777666 34455555566666666666666
Q ss_pred CCCcccCccccCCCCCCcEEEccCCCCCcC--CCccCCCCCCCCEEECCCCccccccc-ccccCCccCcEEeccCC----
Q psy12291 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESL--PANVFHDLISLEELDLSQNVLTSIQY-GTFSGMYSLKRLKLQSN---- 175 (404)
Q Consensus 103 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~---- 175 (404)
|.+..+++..|.++++|++|++++|.++.. ....|.++++|++|++++|.+....+ ..|+++++|++|++++|
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 666665555555555566655555555431 12224444444444444444433322 12333333333333333
Q ss_pred --------------------------------------------------------------------------------
Q psy12291 176 -------------------------------------------------------------------------------- 175 (404)
Q Consensus 176 -------------------------------------------------------------------------------- 175 (404)
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence
Q ss_pred ----------------------------------CCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECC
Q psy12291 176 ----------------------------------RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELS 221 (404)
Q Consensus 176 ----------------------------------~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 221 (404)
.+..+++..|..+++|+.|++++|.++.+.+..+..+++|++|+++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 2222222333344444455555554444444445555555555555
Q ss_pred CCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCcccc-------------------------
Q psy12291 222 ENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL------------------------- 276 (404)
Q Consensus 222 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------------- 276 (404)
+|.+..+.+..+..+++|+.|++++|.+..++...|..+++|+.|++++|.++.+
T Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~ 402 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT 402 (844)
T ss_dssp SCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTT
T ss_pred CCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccc
Confidence 5555554444455555555555555555444444444444444444444433221
Q ss_pred ---------------------------------------c------------------------------cccccCCCCC
Q psy12291 277 ---------------------------------------H------------------------------AGTFAGLTNL 287 (404)
Q Consensus 277 ---------------------------------------~------------------------------~~~~~~~~~L 287 (404)
. +..|.++++|
T Consensus 403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L 482 (844)
T 3j0a_A 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482 (844)
T ss_dssp CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE
T ss_pred cceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccc
Confidence 1 0124455677
Q ss_pred CeeecccccccccCccccCCCCCCcEEeCCCCCCcccCccccc-------------------CCCCCcEEEccCCccccc
Q psy12291 288 TALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLS-------------------LLPNLITLKLAKNPWHCD 348 (404)
Q Consensus 288 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------------------~l~~L~~l~l~~Np~~C~ 348 (404)
++|+|++|+++.+++..|..+++|+.|+|++|+++++++..+. .+++|+.+++++|||.|+
T Consensus 483 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICE 562 (844)
T ss_dssp ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCS
T ss_pred cEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecCCCcccc
Confidence 7777777777777777788888899999999888887765432 245788899999999999
Q ss_pred cCcHHHHHHHHhccCcccC--CCCeeCCCCCCCCCcccCCCCcCCCCccc
Q psy12291 349 CAILYMARWLRANRRKVWD--SKPTCRGPGNLGGKSVEDMSFDDLCEGQW 396 (404)
Q Consensus 349 c~~~~~~~~~~~~~~~~~~--~~~~C~~p~~l~~~~l~~~~~~~~C~~~~ 396 (404)
|++.||..|+......+.. ...+|++|+.++|.++.+++. ..|....
T Consensus 563 c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~-~~C~~~~ 611 (844)
T 3j0a_A 563 CELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLST-EGCDEEE 611 (844)
T ss_dssp SSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCC-CCC----
T ss_pred cccHHHHHHHHhcCcccccccccCccCCchhhCCCccccCcc-ccCCchh
Confidence 9999999999876655433 368999999999999999876 4587543
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-42 Score=333.30 Aligned_cols=350 Identities=23% Similarity=0.330 Sum_probs=268.3
Q ss_pred CceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCC
Q psy12291 24 IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN 103 (404)
Q Consensus 24 ~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 103 (404)
.+.++|++++++.+|.. ++.++++|++++|.+..+.+.+|.++++|++|++++|+++++.+..|..+++|++|++++|
T Consensus 2 ~~~l~ls~n~l~~ip~~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 2 EFLVDRSKNGLIHVPKD--LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CCEEECTTSCCSSCCCS--CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred cceEecCCCCccccccc--ccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 36799999999999976 5589999999999999998889999999999999999999998888899999999999999
Q ss_pred CCcccCccccCCCCCCcEEEccCCCCCcCC-CccCCCCCCCCEEECCCCcccccc-------------------------
Q psy12291 104 LIKTLPSTFFKGAIRLTVVQLSYNAIESLP-ANVFHDLISLEELDLSQNVLTSIQ------------------------- 157 (404)
Q Consensus 104 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~------------------------- 157 (404)
.++.+|.. .+++|++|++++|.++.++ +..|+++++|++|++++|.+....
T Consensus 80 ~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 80 KLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp CCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred ceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccc
Confidence 99988875 7899999999999998754 356788888888888887764311
Q ss_pred cccccC--------------------------C-----------------------------------------------
Q psy12291 158 YGTFSG--------------------------M----------------------------------------------- 164 (404)
Q Consensus 158 ~~~l~~--------------------------l----------------------------------------------- 164 (404)
+..+.. +
T Consensus 157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 236 (520)
T 2z7x_B 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236 (520)
T ss_dssp TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH
T ss_pred cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH
Confidence 111111 0
Q ss_pred ----------ccCcEEeccCCCCC-CCCCCc-------------------------------------------------
Q psy12291 165 ----------YSLKRLKLQSNRIN-QLPPGI------------------------------------------------- 184 (404)
Q Consensus 165 ----------~~L~~L~l~~~~l~-~~~~~~------------------------------------------------- 184 (404)
++|++|++++|.++ .++...
T Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~ 316 (520)
T 2z7x_B 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316 (520)
T ss_dssp HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccc
Confidence 13444444444433 222211
Q ss_pred ---cCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCCh--hhhcCCCCCcEEECCCCCCcc-cCccccc
Q psy12291 185 ---FDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNG--DEFSQLTSLKELHLGQNYIET-IPAGSFA 258 (404)
Q Consensus 185 ---~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~-~~~~~~~ 258 (404)
+..+++|++|++++|.++...+..+..+++|++|++++|.+..++. ..+..+++|++|++++|.+.. ++...+.
T Consensus 317 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 1455667777777777776556667777777777777777775432 456777777788887777776 6665567
Q ss_pred CCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEE
Q psy12291 259 NLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITL 338 (404)
Q Consensus 259 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 338 (404)
.+++|+.|++++|.+++..+..+. ++|++|++++|+++.++...+ .+++|++|++++|+++.++...+..+++|+.|
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEE
Confidence 777888888888877654433332 689999999999998866555 88999999999999999988778899999999
Q ss_pred EccCCccccccCcHHH-HHHHHhccCcccCCCCeeCCCCCCCCCcccCC
Q psy12291 339 KLAKNPWHCDCAILYM-ARWLRANRRKVWDSKPTCRGPGNLGGKSVEDM 386 (404)
Q Consensus 339 ~l~~Np~~C~c~~~~~-~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~ 386 (404)
++++|||.|+|.+.|+ ..|+...... .....+|++| |+++.++
T Consensus 474 ~l~~N~~~c~c~~~~~~~~~~~~~~~~-~~~~~~C~~p----~~~~~~~ 517 (520)
T 2z7x_B 474 WLHTNPWDCSCPRIDYLSRWLNKNSQK-EQGSAKCSGS----GKPVRSI 517 (520)
T ss_dssp ECCSSCBCCCHHHHHHHHHHHHHTTTT-EESCCBBTTT----CCBGGGC
T ss_pred ECcCCCCcccCCchHHHHHHHHhcccc-CCCCCCcCCc----ccchhhh
Confidence 9999999999999999 8999887654 2357899999 4455544
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-41 Score=331.40 Aligned_cols=350 Identities=24% Similarity=0.409 Sum_probs=244.8
Q ss_pred EEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCc
Q psy12291 27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106 (404)
Q Consensus 27 ~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~ 106 (404)
++|.+++++.+|.. ++..+++|++++|.++.+.+.+|.++++|++|++++|++..+++..|..+++|++|++++|.++
T Consensus 10 c~~~~~~l~~ip~~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 10 CDGRSRSFTSIPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp EECTTSCCSSCCSC--CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EECCCCcccccccc--CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 46677788888875 5567888888888888877777888888888888888888887777788888888888888888
Q ss_pred ccCccccCCCCCCcEEEccCCCCCcCC-CccCCCCCCCCEEECCCCc-ccccccccccCCccCcEEeccCCCCCCCCCCc
Q psy12291 107 TLPSTFFKGAIRLTVVQLSYNAIESLP-ANVFHDLISLEELDLSQNV-LTSIQYGTFSGMYSLKRLKLQSNRINQLPPGI 184 (404)
Q Consensus 107 ~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 184 (404)
.+++..|.++++|++|++++|.++.++ +..+.++++|++|++++|. +..+.+..+.++++|++|++++|.+++..+..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 887777778888888888888777543 2345667777777777665 44444344444444444444444433221111
Q ss_pred c-------------------------------------------------------------------------------
Q psy12291 185 F------------------------------------------------------------------------------- 185 (404)
Q Consensus 185 ~------------------------------------------------------------------------------- 185 (404)
+
T Consensus 168 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 247 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247 (549)
T ss_dssp TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGG
T ss_pred hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHh
Confidence 1
Q ss_pred --------------------------------------------------------------------------------
Q psy12291 186 -------------------------------------------------------------------------------- 185 (404)
Q Consensus 186 -------------------------------------------------------------------------------- 185 (404)
T Consensus 248 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~ 327 (549)
T 2z81_A 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327 (549)
T ss_dssp GGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCH
T ss_pred hhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCH
Confidence
Q ss_pred ---CCCCCCCeEecCCCcCcccC---CCccCCCCCCCEEECCCCcCCCCCh--hhhcCCCCCcEEECCCCCCcccCcccc
Q psy12291 186 ---DDLKYLDFLSLRNNRLSFIR---PGLFNYFKHLTFLELSENWISSLNG--DEFSQLTSLKELHLGQNYIETIPAGSF 257 (404)
Q Consensus 186 ---~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~~~~~~~ 257 (404)
..+++|++|++++|.+.+.. ...+..+++|++|++++|.+..++. ..+..+++|++|++++|.+..+|. .+
T Consensus 328 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~ 406 (549)
T 2z81_A 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SC 406 (549)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS-CC
T ss_pred HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCCh-hh
Confidence 12344444555554444321 1124455666666666666665542 346677778888888887777765 45
Q ss_pred cCCCCCcEEECcCCCcccccccc-----------------ccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCC
Q psy12291 258 ANLQSLEKLFLYSNNIQELHAGT-----------------FAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNK 320 (404)
Q Consensus 258 ~~l~~L~~L~L~~n~l~~~~~~~-----------------~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 320 (404)
..+++|+.|++++|.++.++... +..+++|++|++++|+++.++.. ..+++|++|++++|+
T Consensus 407 ~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~--~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 407 QWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDA--SLFPVLLVMKISRNQ 484 (549)
T ss_dssp CCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCG--GGCTTCCEEECCSSC
T ss_pred cccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCc--ccCccCCEEecCCCc
Confidence 66677777777777766554321 12578899999999999887653 457899999999999
Q ss_pred CcccCcccccCCCCCcEEEccCCccccccC-cHHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCC
Q psy12291 321 LQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDM 386 (404)
Q Consensus 321 l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~-~~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~ 386 (404)
++++++..+..+++|+.|++++|||.|+|+ +.|+.+|+...... ......|++| |++++++
T Consensus 485 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~~~~-~~~~~~C~~~----~~~~~~~ 546 (549)
T 2z81_A 485 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK-EQGSAKCSGS----GKPVRSI 546 (549)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHCTTT-EESCCBBTTT----CCBGGGC
T ss_pred cCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhcccc-cCCCCeECCC----Ccchhhc
Confidence 999999889999999999999999999999 56777899877654 3357899987 5666653
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4e-40 Score=324.33 Aligned_cols=331 Identities=27% Similarity=0.333 Sum_probs=247.1
Q ss_pred CCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCC
Q psy12291 13 CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIST 92 (404)
Q Consensus 13 ~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 92 (404)
.|+..|.|......++|.+.+++.+|.. +|..+++|++++|.++.+.+.+|.++++|++|++++|++..+.+..|.++
T Consensus 3 ~~~~~C~~~~~~~~~~c~~~~l~~iP~~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 80 (606)
T 3t6q_A 3 SSDQKCIEKEVNKTYNCENLGLNEIPGT--LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ 80 (606)
T ss_dssp ---CCCEEEETTTEEECTTSCCSSCCTT--SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTC
T ss_pred cccCceecccCCceEECCCCCcccCcCC--CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCc
Confidence 4577899988888999999999999986 78899999999999999999999999999999999999999988889999
Q ss_pred CCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEec
Q psy12291 93 INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKL 172 (404)
Q Consensus 93 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l 172 (404)
++|++|++++|.+..+++..|.++++|++|++++|.++.+++..+.++++|++|++++|.+..+....+..+++|++|++
T Consensus 81 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 160 (606)
T 3t6q_A 81 HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEEC
T ss_pred cccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEc
Confidence 99999999999999988878999999999999999999887777888999999999999988876556666888888888
Q ss_pred cCCCCCCCCCCccCCCCCCC--eEecCCCcCcccCC--------------------------------------------
Q psy12291 173 QSNRINQLPPGIFDDLKYLD--FLSLRNNRLSFIRP-------------------------------------------- 206 (404)
Q Consensus 173 ~~~~l~~~~~~~~~~l~~L~--~L~l~~~~~~~~~~-------------------------------------------- 206 (404)
++|.++.+++..|..+++|+ .|++++|.+..+.+
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~ 240 (606)
T 3t6q_A 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240 (606)
T ss_dssp CSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCC
T ss_pred ccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccc
Confidence 88888877666666667666 66666666554433
Q ss_pred -------------------------------CccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcc
Q psy12291 207 -------------------------------GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAG 255 (404)
Q Consensus 207 -------------------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 255 (404)
..+..+++|++|++++|.+..++ ..+..+++|++|++++|.+..+++.
T Consensus 241 ~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp CCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC-SSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred cccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCC-hhhcccccCCEEECccCCcCcCchh
Confidence 33444555555555555555443 2345555555555555555555444
Q ss_pred cccCCCCCcEEECcCCCcc-ccccccccCCCCCCeeecccccccccC--ccccCCCCCCcEEeCCCCCCcccCcccccCC
Q psy12291 256 SFANLQSLEKLFLYSNNIQ-ELHAGTFAGLTNLTALFLNNNLLRYLD--TKAFEPMLHLKKLQLDSNKLQYLATDSLSLL 332 (404)
Q Consensus 256 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 332 (404)
.+..+++|+.|++++|.+. .++...+..+++|++|++++|+++.+. +..+..+++|++|++++|++.++++..+..+
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 399 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence 4555555566666555554 344444566666666666666666554 4456666677777777777766666666667
Q ss_pred CCCcEEEccCCccc
Q psy12291 333 PNLITLKLAKNPWH 346 (404)
Q Consensus 333 ~~L~~l~l~~Np~~ 346 (404)
++|+.|++++|.+.
T Consensus 400 ~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 400 PQLELLDLAFTRLK 413 (606)
T ss_dssp TTCSEEECTTCCEE
T ss_pred ccCCeEECCCCcCC
Confidence 77777777776653
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=100.00 E-value=3.2e-40 Score=297.19 Aligned_cols=298 Identities=25% Similarity=0.421 Sum_probs=208.9
Q ss_pred CCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccC--cccccC
Q psy12291 14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP--GKLFIS 91 (404)
Q Consensus 14 ~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~ 91 (404)
||..|.|. ...++|.+.+++.+|.. .+.++++|++++|.++.++...|.++++|++|++++|.+..+. +..+..
T Consensus 1 CP~~C~C~--~~~l~c~~~~l~~ip~~--~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 76 (306)
T 2z66_A 1 CPSRCSCS--GTEIRCNSKGLTSVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76 (306)
T ss_dssp CCTTCEEE--TTEEECCSSCCSSCCSC--CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS
T ss_pred CcCCCeeC--CCEEEcCCCCcccCCCC--CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc
Confidence 78999997 46899999999999986 6778999999999999888877889999999999999887553 234456
Q ss_pred CCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEe
Q psy12291 92 TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLK 171 (404)
Q Consensus 92 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~ 171 (404)
+++|++|++++|.+..++.. +..+++|++|++++|.++.++.. ..+..+++|++|+
T Consensus 77 ~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~-----------------------~~~~~l~~L~~L~ 132 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF-----------------------SVFLSLRNLIYLD 132 (306)
T ss_dssp CSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESSTTT-----------------------TTTTTCTTCCEEE
T ss_pred ccccCEEECCCCccccChhh-cCCCCCCCEEECCCCcccccccc-----------------------hhhhhccCCCEEE
Confidence 78888888888888777654 55666777777766666554430 2334444555555
Q ss_pred ccCCCCCCCCCCccCCCCCCCeEecCCCcCcc-cCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCc
Q psy12291 172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLSF-IRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE 250 (404)
Q Consensus 172 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 250 (404)
+++|.+..+.+..+..+++|++|++++|.+.. ..+ .
T Consensus 133 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------------~------------------- 169 (306)
T 2z66_A 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------------------------D------------------- 169 (306)
T ss_dssp CTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC------------------------S-------------------
T ss_pred CCCCcCCccchhhcccCcCCCEEECCCCccccccch------------------------h-------------------
Confidence 55555444443334444444445444444332 111 1
Q ss_pred ccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCccccc
Q psy12291 251 TIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLS 330 (404)
Q Consensus 251 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 330 (404)
.+..+++|+.|++++|.++.+.+..+..+++|++|++++|+++.++...+..+++|+.|++++|++++..+..+.
T Consensus 170 -----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 170 -----IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp -----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred -----HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 223334444444444444444444455555666666666666666555666777888888888888887777777
Q ss_pred CCC-CCcEEEccCCccccccCcHHHHHHHHhccCcccC-CCCeeCCCCCCCCCcccCCC
Q psy12291 331 LLP-NLITLKLAKNPWHCDCAILYMARWLRANRRKVWD-SKPTCRGPGNLGGKSVEDMS 387 (404)
Q Consensus 331 ~l~-~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~-~~~~C~~p~~l~~~~l~~~~ 387 (404)
.++ +|+.|++++||+.|+|...|+.+|++..+..... ...+|+.|+.++|+++.+++
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~ 303 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN 303 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGGGCC
T ss_pred hhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceeeeec
Confidence 774 8999999999999999999999999987655443 37899999999999999884
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.4e-40 Score=304.90 Aligned_cols=321 Identities=25% Similarity=0.354 Sum_probs=245.9
Q ss_pred CCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEc
Q psy12291 45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL 124 (404)
Q Consensus 45 ~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 124 (404)
.+++.|+++++.++.++...|.++++|++|++++|.+..+++..|..+++|++|++++|.++.+++..|.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 46778888888887777777777788888888888888777777777888888888888887777777777888888888
Q ss_pred cCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCC----------------C
Q psy12291 125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDD----------------L 188 (404)
Q Consensus 125 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~----------------l 188 (404)
++|.++.++...|..+++|++|++++|.+..+.+..+.++++|++|++++|.++.++...+.. .
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~ 204 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 204 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCC
Confidence 888888777777777778888888888777777777777778888888887777664322211 2
Q ss_pred CCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEEC
Q psy12291 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL 268 (404)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L 268 (404)
++|+.|++++|.+..++. ...++|+.|++++|.+... ..+..+++|++|++++|.+..+.+..+..+++|+.|++
T Consensus 205 ~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp SSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred CcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence 345555666665555432 2346899999999988876 46889999999999999999987778999999999999
Q ss_pred cCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccc
Q psy12291 269 YSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCD 348 (404)
Q Consensus 269 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~ 348 (404)
++|.++.++. .+..+++|++|++++|+++.++.. +..+++|+.|++++|+++.++ +..+++|+.|++++|||.|+
T Consensus 280 ~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 280 SNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCcCcccCc-ccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccch
Confidence 9999998854 456789999999999999988543 567889999999999999885 66789999999999999999
Q ss_pred cCcHHHHHHHHhccCcccCCCCeeCCCCCC
Q psy12291 349 CAILYMARWLRANRRKVWDSKPTCRGPGNL 378 (404)
Q Consensus 349 c~~~~~~~~~~~~~~~~~~~~~~C~~p~~l 378 (404)
|...++..|.+.. +......|..|...
T Consensus 355 ~~~~~~~~~~~~~---~~~~~~~c~~~~~~ 381 (390)
T 3o6n_A 355 SLRALFRNVARPA---VDDADQHCKIDYQL 381 (390)
T ss_dssp HHHHHTTTCCTTT---BCCCCSCCCTTCEE
T ss_pred hHHHHHHHHHhhc---ccccCceecccccc
Confidence 8655444333221 22235667765443
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=100.00 E-value=2.6e-38 Score=281.75 Aligned_cols=279 Identities=33% Similarity=0.526 Sum_probs=189.0
Q ss_pred CCCCCceecCCC-ceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccC
Q psy12291 13 CCEGPCRCRPEI-HTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIS 91 (404)
Q Consensus 13 ~~~~~c~c~~~~-~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 91 (404)
.||..|.|..+. ..++|.+++++.+|.. .+.++++|++++|.++.+.+..|.++++|++|++++|.+.++.+..|..
T Consensus 1 ~CP~~C~C~~~~~~~~~c~~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 78 (285)
T 1ozn_A 1 PCPGACVCYNEPKVTTSCPQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78 (285)
T ss_dssp CCCTTCEEECSSSCEEECCSSCCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CcCCCceECCCCCeEEEcCcCCcccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence 389999998765 7899999999999975 6778888888888888887777777778888888777777776666667
Q ss_pred CCCCCEEeCCCCC-CcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEE
Q psy12291 92 TINLSTMDLSQNL-IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRL 170 (404)
Q Consensus 92 ~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 170 (404)
+++|++|++++|. ++.+++..|..++ +|++|++++|.+..+.+..+.++++|++|
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLG------------------------RLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCT------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCc------------------------CCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 7777777777765 6655544444444 44444444444333222223333333333
Q ss_pred eccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCc
Q psy12291 171 KLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE 250 (404)
Q Consensus 171 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 250 (404)
++++|.++.+++ ..+..+++|++|++++|.+.
T Consensus 135 ~l~~n~l~~~~~------------------------------------------------~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 135 YLQDNALQALPD------------------------------------------------DTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp ECCSSCCCCCCT------------------------------------------------TTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcccccCH------------------------------------------------hHhccCCCccEEECCCCccc
Confidence 333333222221 11222333333444443333
Q ss_pred ccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCccccc
Q psy12291 251 TIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLS 330 (404)
Q Consensus 251 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 330 (404)
.++. ..|..+++|++|++++|+++.+.+..+..+++|+.|++++|.++++++..+.
T Consensus 167 ~~~~------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 222 (285)
T 1ozn_A 167 SVPE------------------------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222 (285)
T ss_dssp EECT------------------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT
T ss_pred ccCH------------------------HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcc
Confidence 3333 3344445555555555555555556666777888888888888888877788
Q ss_pred CCCCCcEEEccCCccccccCcHHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCCCCcCC
Q psy12291 331 LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL 391 (404)
Q Consensus 331 ~l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~~~~~~ 391 (404)
.+++|+.|++++|||.|+|...|+..|++..... .....|+.|+.++|+.+.++...++
T Consensus 223 ~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~--~~~~~c~~p~~l~g~~l~~l~~~~l 281 (285)
T 1ozn_A 223 PLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGS--SSEVPCSLPQRLAGRDLKRLAANDL 281 (285)
T ss_dssp TCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSE--ECCCBEEESGGGTTCBGGGSCGGGS
T ss_pred cCcccCEEeccCCCccCCCCcHHHHHHHHhcccc--cCccccCCchHhCCcChhhcCHHHh
Confidence 8999999999999999999999999999886532 3578899999999999999988776
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=7.3e-38 Score=284.80 Aligned_cols=308 Identities=25% Similarity=0.417 Sum_probs=228.5
Q ss_pred CCCCCCCCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCc
Q psy12291 7 EDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG 86 (404)
Q Consensus 7 ~~~w~~~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 86 (404)
...|...||..|.|. .+.++|.+.+++.+|.. .+..+++|++++|.++.+.+..|.++++|++|++++|.+..+.+
T Consensus 18 i~~~~~~cp~~c~c~--l~~l~~~~~~l~~lp~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (330)
T 1xku_A 18 IEPMGPVCPFRCQCH--LRVVQCSDLGLEKVPKD--LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93 (330)
T ss_dssp ----CCCCCTTCEEE--TTEEECTTSCCCSCCCS--CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT
T ss_pred cccccCCCCCCCcCC--CeEEEecCCCccccCcc--CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH
Confidence 556888899999885 68899999999999976 67799999999999999988889999999999999999999988
Q ss_pred ccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccc--cccccccCC
Q psy12291 87 KLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTS--IQYGTFSGM 164 (404)
Q Consensus 87 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~l~~l 164 (404)
..|..+++|++|++++|.++.+|...+ ++|++|++++|.++.++...|.++++|+.|++++|.+.. ..+..+.++
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 170 (330)
T 1xku_A 94 GAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170 (330)
T ss_dssp TTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred HHhcCCCCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC
Confidence 888999999999999999999887644 689999999999998888878889999999999998864 556677888
Q ss_pred ccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEEC
Q psy12291 165 YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHL 244 (404)
Q Consensus 165 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 244 (404)
++|++|++++|.++.++...+ ++|++|++++|.++.+.+..+..+++|++|++++|.+..+++..+..+++|++|++
T Consensus 171 ~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 171 KKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247 (330)
T ss_dssp TTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred CCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence 888999998888887776442 67777777777777766666677777777777777766666556666666777777
Q ss_pred CCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcc-
Q psy12291 245 GQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQY- 323 (404)
Q Consensus 245 ~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~- 323 (404)
++|.+..++. .+..+++|+.|++++|.++.++...|.... .....+.++.|++++|.+..
T Consensus 248 ~~N~l~~lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 248 NNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp CSSCCSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGG
T ss_pred CCCcCccCCh-hhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCccccc
Confidence 7666666654 355566666666666666666555443210 00012455556666665543
Q ss_pred -cCcccccCCCCCcEEEccCC
Q psy12291 324 -LATDSLSLLPNLITLKLAKN 343 (404)
Q Consensus 324 -~~~~~~~~l~~L~~l~l~~N 343 (404)
+++..+..+++++.+++++|
T Consensus 309 ~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 309 EIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GSCGGGGTTCCCGGGEEC---
T ss_pred ccCccccccccceeEEEeccc
Confidence 44455555666666666655
No 19
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=6.6e-38 Score=285.25 Aligned_cols=302 Identities=25% Similarity=0.435 Sum_probs=228.6
Q ss_pred CCCCCCCCCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccC
Q psy12291 6 KEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85 (404)
Q Consensus 6 ~~~~w~~~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 85 (404)
....|...||..|.|. .+.++|.+++++.+|.. .+.++++|++++|.+..+.+.+|.++++|++|++++|+++.+.
T Consensus 19 lp~~~~~~cp~~c~c~--l~~l~~~~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 94 (332)
T 2ft3_A 19 LPPTYSAMCPFGCHCH--LRVVQCSDLGLKAVPKE--ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH 94 (332)
T ss_dssp ------CCCCSSCEEE--TTEEECCSSCCSSCCSC--CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCcccCCCCCCCccc--CCEEECCCCCccccCCC--CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC
Confidence 3446777899999885 68899999999999986 5679999999999999998888999999999999999999998
Q ss_pred cccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccc--cccccccC
Q psy12291 86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTS--IQYGTFSG 163 (404)
Q Consensus 86 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~l~~ 163 (404)
+..|..+++|++|++++|.++.+|...+ ++|++|++++|.++.++...|.++++|+.|++++|.+.. ..+..+..
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 171 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS
T ss_pred HhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC
Confidence 8889999999999999999999987654 799999999999999988888899999999999998864 55566777
Q ss_pred CccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEE
Q psy12291 164 MYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELH 243 (404)
Q Consensus 164 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 243 (404)
+ +|++|++++|.++.++...+ ++|++|++++|.++.+.+..+..+++|++|++++|.+..+++..+..+++|++|+
T Consensus 172 l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 247 (332)
T 2ft3_A 172 L-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247 (332)
T ss_dssp C-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred C-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEE
Confidence 6 89999999998888776543 6788888888888777767777777777777777777777666677777777777
Q ss_pred CCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCC------CCCCeeeccccccc--ccCccccCCCCCCcEEe
Q psy12291 244 LGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGL------TNLTALFLNNNLLR--YLDTKAFEPMLHLKKLQ 315 (404)
Q Consensus 244 l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~------~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~ 315 (404)
+++|.+..++. .+..+++|+.|++++|.++.++...|... +.|+.|++++|.+. .+.+..|..+++|+.++
T Consensus 248 L~~N~l~~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~ 326 (332)
T 2ft3_A 248 LDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326 (332)
T ss_dssp CCSSCCCBCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred CCCCcCeecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence 77777776665 35666777777777777776666555432 33444444444443 23333444444444444
Q ss_pred CCCC
Q psy12291 316 LDSN 319 (404)
Q Consensus 316 l~~n 319 (404)
+++|
T Consensus 327 l~~n 330 (332)
T 2ft3_A 327 FGNY 330 (332)
T ss_dssp C---
T ss_pred cccc
Confidence 4433
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.6e-38 Score=308.96 Aligned_cols=301 Identities=25% Similarity=0.354 Sum_probs=237.0
Q ss_pred CCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEc
Q psy12291 45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL 124 (404)
Q Consensus 45 ~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 124 (404)
.+++.++++++.+..+++..|.++++|+.|++++|.+..+++..|..+++|++|++++|.++.+++..|.++++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 46778888888887777777777788888888888888777777778888888888888888777777777888888888
Q ss_pred cCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccC----------------CC
Q psy12291 125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFD----------------DL 188 (404)
Q Consensus 125 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~----------------~l 188 (404)
++|.++.++...|.++++|+.|++++|.+..+.+..|.++++|+.|++++|.++.++...+. ..
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~ 210 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 210 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCC
Confidence 88888877777777788888888888888777777777788888888888877766532221 12
Q ss_pred CCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEEC
Q psy12291 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL 268 (404)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L 268 (404)
++|+.|++++|.+..++.. ..++|+.|++++|.+... ..+..+++|+.|++++|.+..+++..+..+++|+.|+|
T Consensus 211 ~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 285 (597)
T 3oja_B 211 IAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285 (597)
T ss_dssp TTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred chhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEEC
Confidence 3345555555555544332 235789999999988875 56889999999999999999987778999999999999
Q ss_pred cCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccc
Q psy12291 269 YSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCD 348 (404)
Q Consensus 269 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~ 348 (404)
++|.++.++. .+..+++|++|+|++|.++.++. .+..+++|+.|+|++|.+..++ +..+++|+.|++++|||.|+
T Consensus 286 s~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~-~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 286 SNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TTSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGG-GHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCCCCCc-ccccCCCCcEEECCCCCCCccCc-ccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 9999999854 45678999999999999998754 4567899999999999999885 56789999999999999999
Q ss_pred cCcHHHH
Q psy12291 349 CAILYMA 355 (404)
Q Consensus 349 c~~~~~~ 355 (404)
|...|+.
T Consensus 361 ~~~~~~~ 367 (597)
T 3oja_B 361 SLRALFR 367 (597)
T ss_dssp HHHHHTT
T ss_pred hHHHHHH
Confidence 8544433
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=304.15 Aligned_cols=330 Identities=25% Similarity=0.299 Sum_probs=293.2
Q ss_pred CCCceEEecCCCCCccCCCC-CCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeC
Q psy12291 22 PEIHTLSCWKQDMEELPFDQ-IIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDL 100 (404)
Q Consensus 22 ~~~~~~~~~~~~l~~ip~~~-~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 100 (404)
...+.++..++.++.++... ....++++|++++|.+..+.+.+|.++++|++|++++|.+..++...|..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 45789999999999987543 33468999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCC
Q psy12291 101 SQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQL 180 (404)
Q Consensus 101 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~ 180 (404)
++|.+..+++..|..+++|++|++++|.+..+....|.++++|+.|++++|.+..+....+.++++|+.|++++|.+..+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 99999999888899999999999999999999888899999999999999999999888899999999999999999999
Q ss_pred CCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCC
Q psy12291 181 PPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL 260 (404)
Q Consensus 181 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l 260 (404)
++..|..+++|+.|++++|......+.......+|+.|++++|.+..++...+..+++|+.|++++|.+..++...+..+
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 98889999999999999987655444444455699999999999999998889999999999999999999998889999
Q ss_pred CCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEc
Q psy12291 261 QSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKL 340 (404)
Q Consensus 261 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 340 (404)
++|+.|++++|.++.+.+..|.++++|++|++++|+++.++...|..+++|+.|++++|.+..-.. ..........+.+
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~-~~~~~~~~~~~~~ 350 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR-LLWVFRRRWRLNF 350 (477)
T ss_dssp TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG-GHHHHTTTTSSCC
T ss_pred ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc-hHhHHhhhhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999875322 1111223344567
Q ss_pred cCCccccccCcH
Q psy12291 341 AKNPWHCDCAIL 352 (404)
Q Consensus 341 ~~Np~~C~c~~~ 352 (404)
.++...|.++..
T Consensus 351 ~~~~~~C~~p~~ 362 (477)
T 2id5_A 351 NRQQPTCATPEF 362 (477)
T ss_dssp TTCCCBEEESGG
T ss_pred CccCceeCCchH
Confidence 788888987653
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.5e-38 Score=312.14 Aligned_cols=323 Identities=29% Similarity=0.396 Sum_probs=275.5
Q ss_pred ceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCE
Q psy12291 18 CRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLST 97 (404)
Q Consensus 18 c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 97 (404)
|.|. ...++|.+.+++.+|.. ++.++++|++++|.++.+.+..|.++++|++|++++|.+.++++..|.++++|++
T Consensus 2 C~~~--~~~~~cs~~~L~~ip~~--~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 77 (680)
T 1ziw_A 2 CTVS--HEVADCSHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV 77 (680)
T ss_dssp --CB--SSEEECCSSCCSSCCSC--SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCE
T ss_pred ceeE--CCeeECCCCCccccccc--cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCE
Confidence 5565 46899999999999976 6789999999999999999989999999999999999999999888999999999
Q ss_pred EeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCC
Q psy12291 98 MDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRI 177 (404)
Q Consensus 98 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l 177 (404)
|++++|.++.+++..|.++++|++|++++|.++.+++..|.++++|++|++++|.+....+..+.++++|++|++++|.+
T Consensus 78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred EECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 99999999999998899999999999999999999988899999999999999999988888899999999999999999
Q ss_pred CCCCCCccC--CCCCCCeEecCCCcCcccCCCccCCC---------------------------CCCCEEECCCCcCCCC
Q psy12291 178 NQLPPGIFD--DLKYLDFLSLRNNRLSFIRPGLFNYF---------------------------KHLTFLELSENWISSL 228 (404)
Q Consensus 178 ~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l---------------------------~~L~~L~l~~~~~~~~ 228 (404)
+.+++..+. .+++|+.|++++|.++.+.+..+..+ ++|+.|++++|.+...
T Consensus 158 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 237 (680)
T 1ziw_A 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237 (680)
T ss_dssp CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc
Confidence 888765443 45889999999998887766655433 5677788888888777
Q ss_pred ChhhhcCCCC--CcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeeccccccc--------
Q psy12291 229 NGDEFSQLTS--LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLR-------- 298 (404)
Q Consensus 229 ~~~~~~~l~~--L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~-------- 298 (404)
.+.++..++. |+.|++++|.+..+++..+..+++|+.|++++|.+..+.+..|.++++|++|++++|...
T Consensus 238 ~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l 317 (680)
T 1ziw_A 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317 (680)
T ss_dssp CTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------C
T ss_pred ChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccc
Confidence 7777776654 999999999888888777888899999999999888888778888888888888876433
Q ss_pred -ccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCc
Q psy12291 299 -YLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344 (404)
Q Consensus 299 -~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np 344 (404)
.+....|..+++|++|++++|.++++++..+..+++|+.|++++|.
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 3333467778888888888888888887778888888888888775
No 23
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.6e-38 Score=290.47 Aligned_cols=321 Identities=22% Similarity=0.379 Sum_probs=234.7
Q ss_pred CCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCC
Q psy12291 14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTI 93 (404)
Q Consensus 14 ~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 93 (404)
++..|.|+.. ..++|.+++++.+|.. .+.++++|++++|.++.+.+..|.++++|++|++++|+++++++..|..++
T Consensus 24 ~~~~~~C~~~-~~c~~~~~~l~~iP~~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 24 NQASLSCDRN-GICKGSSGSLNSIPSG--LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp ---CCEECTT-SEEECCSTTCSSCCTT--CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CccCCCCCCC-eEeeCCCCCccccccc--ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 4567777764 4589999999999986 667899999999999999888899999999999999999998888889999
Q ss_pred CCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCC-ccCCCCCCCCEEECCCC-cccccccccccCCccCcEEe
Q psy12291 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPA-NVFHDLISLEELDLSQN-VLTSIQYGTFSGMYSLKRLK 171 (404)
Q Consensus 94 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~ 171 (404)
+|++|++++|.++.+++..|.++++|++|++++|.++.++. ..|..+++|+.|++++| .+..+.+..+.++++|++|+
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 99999999999999988878889999999999998888876 56777788888888777 46666556666666666666
Q ss_pred ccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcc
Q psy12291 172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIET 251 (404)
Q Consensus 172 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 251 (404)
+++|.++.+.+..+..+++|++|+++ +|.+..++...+..+++|+.|++++|.+..
T Consensus 181 l~~n~l~~~~~~~l~~l~~L~~L~l~------------------------~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 181 IDASDLQSYEPKSLKSIQNVSHLILH------------------------MKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEE------------------------CSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred CCCCCcCccCHHHHhccccCCeecCC------------------------CCccccchhhhhhhcccccEEECCCCcccc
Confidence 66666665544444555555555554 444444443334445666666666666655
Q ss_pred cCccccc---CCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCccc
Q psy12291 252 IPAGSFA---NLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDS 328 (404)
Q Consensus 252 ~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 328 (404)
++...+. ..+.++.++++++. ++++.+..+ +..+..+++|+.|++++|+++.++...
T Consensus 237 ~~~~~l~~~~~~~~l~~l~L~~~~-------------------l~~~~l~~l-~~~l~~l~~L~~L~Ls~N~l~~i~~~~ 296 (353)
T 2z80_A 237 FHFSELSTGETNSLIKKFTFRNVK-------------------ITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPDGI 296 (353)
T ss_dssp CCCC------CCCCCCEEEEESCB-------------------CCHHHHHHH-HHHHHTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccccccccccccchhhcccccccc-------------------ccCcchhhh-HHHHhcccCCCEEECCCCCCCccCHHH
Confidence 4432211 12233333333322 222333333 345677889999999999999998877
Q ss_pred ccCCCCCcEEEccCCccccccC-cHHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCC
Q psy12291 329 LSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDM 386 (404)
Q Consensus 329 ~~~l~~L~~l~l~~Np~~C~c~-~~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~ 386 (404)
+..+++|+.|++++|||.|+|+ +.|+..|+......+ .....|++| |++++++
T Consensus 297 ~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~-~~~~~C~~p----~~~l~~~ 350 (353)
T 2z80_A 297 FDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE-QGSAKCSGS----GKPVRSI 350 (353)
T ss_dssp TTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTE-ESCCBBTTT----CCBGGGC
T ss_pred HhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccC-CCCcccCCC----CCcceee
Confidence 8899999999999999999997 889999999887665 347899998 4566554
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.6e-35 Score=269.93 Aligned_cols=302 Identities=22% Similarity=0.341 Sum_probs=261.6
Q ss_pred CCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCC
Q psy12291 22 PEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLS 101 (404)
Q Consensus 22 ~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 101 (404)
+..+.+++.++.+..+|.. ....++++|++++|.++.+.+ +.++++|++|++++|.+..++ .|..+++|++|+++
T Consensus 44 ~~L~~L~l~~~~i~~~~~~-~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGI-EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLN 118 (347)
T ss_dssp TTCSEEECCSSCCCCCTTG-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECT
T ss_pred ccccEEEEeCCccccchhh-hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECc
Confidence 4578899999999988753 345689999999999988865 899999999999999999875 37899999999999
Q ss_pred CCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCC
Q psy12291 102 QNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181 (404)
Q Consensus 102 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 181 (404)
+|.+..+++ +..+++|+.|++++|........ +..+++|+.|++++|.+..... +..+++|++|++++|.+..++
T Consensus 119 ~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 119 EDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp TSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCG
T ss_pred CCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccc
Confidence 999998876 88899999999999954433332 6788999999999999887764 778899999999999998877
Q ss_pred CCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCC
Q psy12291 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ 261 (404)
Q Consensus 182 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~ 261 (404)
+ +..+++|+.+++++|.+....+ +..+++|++|++++|.+...++ +..+++|++|++++|.+..++ .+..++
T Consensus 194 ~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~ 265 (347)
T 4fmz_A 194 P--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLT 265 (347)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCT
T ss_pred c--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhcCC
Confidence 6 6788999999999999887654 7788999999999999988764 888999999999999998874 478899
Q ss_pred CCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEcc
Q psy12291 262 SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLA 341 (404)
Q Consensus 262 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 341 (404)
+|+.|++++|.+++++ .+..+++|++|++++|+++...+..+..+++|++|++++|+++++++ +..+++|+.|+++
T Consensus 266 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 266 KLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp TCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred CcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence 9999999999999884 47889999999999999999888889999999999999999999876 7889999999999
Q ss_pred CCcc
Q psy12291 342 KNPW 345 (404)
Q Consensus 342 ~Np~ 345 (404)
+|++
T Consensus 342 ~N~i 345 (347)
T 4fmz_A 342 NQVI 345 (347)
T ss_dssp CC--
T ss_pred hhcc
Confidence 9986
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.6e-36 Score=283.69 Aligned_cols=305 Identities=26% Similarity=0.352 Sum_probs=263.3
Q ss_pred CCCceEEecCCCCCccCCC-CCCCCCeeEEEcCCCCCc-ccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEe
Q psy12291 22 PEIHTLSCWKQDMEELPFD-QIIPVDIRVIDLGINQLS-TLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMD 99 (404)
Q Consensus 22 ~~~~~~~~~~~~l~~ip~~-~~~~~~l~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 99 (404)
+..+.++..++.++.++.. .....++++|++++|.+. .+.+..|.++++|++|++++|++..+.+..|..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 4578999999999988543 344568999999999986 67778899999999999999999999888899999999999
Q ss_pred CCCCCCcc--cCccccCCCCCCcEEEccCCCCCcCCCc-cCCCCCCCCEEECCCCcccccccccccC-------------
Q psy12291 100 LSQNLIKT--LPSTFFKGAIRLTVVQLSYNAIESLPAN-VFHDLISLEELDLSQNVLTSIQYGTFSG------------- 163 (404)
Q Consensus 100 l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~------------- 163 (404)
+++|.++. .....|..+++|++|++++|.++.+.+. .+.++++|+.|++++|.+....+..+..
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 99999986 3344588999999999999999988554 4788999999999999988776554443
Q ss_pred ---------------------CccCcEEeccCCCCCCCCCC-------------------------------------cc
Q psy12291 164 ---------------------MYSLKRLKLQSNRINQLPPG-------------------------------------IF 185 (404)
Q Consensus 164 ---------------------l~~L~~L~l~~~~l~~~~~~-------------------------------------~~ 185 (404)
+++|++|++++|.++...+. .+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 35788888888876531110 01
Q ss_pred C--CCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCC
Q psy12291 186 D--DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSL 263 (404)
Q Consensus 186 ~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L 263 (404)
. ..++|++|++++|.+....+..+..+++|++|++++|.+..+++..+..+++|++|++++|.+..+++..+..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 1 12589999999999999988999999999999999999999988899999999999999999999988889999999
Q ss_pred cEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCc
Q psy12291 264 EKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT 326 (404)
Q Consensus 264 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 326 (404)
+.|++++|.++.+.+..|..+++|++|++++|+++.++...+..+++|++|++++|+++.-.+
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999988899999999999999999999999899999999999999999986543
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-35 Score=299.17 Aligned_cols=330 Identities=23% Similarity=0.182 Sum_probs=252.0
Q ss_pred CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCC
Q psy12291 23 EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ 102 (404)
Q Consensus 23 ~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 102 (404)
..+.++..++.+...++......++++|++++|.+....+..|.++++|++|++++|.+.+..+.. .+++|++|++++
T Consensus 201 ~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~ 278 (768)
T 3rgz_A 201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAE 278 (768)
T ss_dssp TCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCS
T ss_pred cCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcC
Confidence 467778887777664443444567888888888888777777888888888888888777433322 566677777777
Q ss_pred CCCc-ccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCccc-ccccccccCCccCcEEeccCCCCCCC
Q psy12291 103 NLIK-TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLT-SIQYGTFSGMYSLKRLKLQSNRINQL 180 (404)
Q Consensus 103 n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~~~l~~~ 180 (404)
|.++ .+|...+..+++|++|++++|.++...+..|..+++|+.|++++|.+. .++...+.++++|++|++++|.+++.
T Consensus 279 n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~ 358 (768)
T 3rgz_A 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358 (768)
T ss_dssp SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcc
Confidence 7665 455543333477777777777776555555666777777777777665 33333366666666666666655422
Q ss_pred CC-------------------------CccCC--CCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhh
Q psy12291 181 PP-------------------------GIFDD--LKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEF 233 (404)
Q Consensus 181 ~~-------------------------~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 233 (404)
.+ ..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+
T Consensus 359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 438 (768)
T 3rgz_A 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438 (768)
T ss_dssp CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH
Confidence 11 11222 5667777777777776777788889999999999999988777889
Q ss_pred cCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcE
Q psy12291 234 SQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKK 313 (404)
Q Consensus 234 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 313 (404)
..+++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|+++...+..+..+++|++
T Consensus 439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence 99999999999999998666667888999999999999999877888999999999999999999887888999999999
Q ss_pred EeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHHH
Q psy12291 314 LQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYM 354 (404)
Q Consensus 314 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~ 354 (404)
|++++|++++..+..+..+++|+.|++++|++.+.++..++
T Consensus 519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 99999999987788899999999999999999887765443
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.6e-35 Score=265.93 Aligned_cols=288 Identities=24% Similarity=0.379 Sum_probs=252.2
Q ss_pred CeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEcc
Q psy12291 46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLS 125 (404)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 125 (404)
.++.++++++.++.++.. + .++|+.|++++|.+..+++..|..+++|++|++++|.++.+++..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~-~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKE-I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSC-C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCC-C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 588999999999887643 3 3689999999999999988889999999999999999999988889999999999999
Q ss_pred CCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCC--CCCCccCCCCCCCeEecCCCcCcc
Q psy12291 126 YNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ--LPPGIFDDLKYLDFLSLRNNRLSF 203 (404)
Q Consensus 126 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~ 203 (404)
+|.++.++...+ ++|++|++++|.+..+.+..|.++++|++|++++|.++. +.+..+..+ +|++|++++|.++.
T Consensus 111 ~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 999999887654 799999999999999988889999999999999999964 666677777 99999999999988
Q ss_pred cCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccC
Q psy12291 204 IRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAG 283 (404)
Q Consensus 204 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 283 (404)
++.... ++|++|++++|.+...++..+..+++|+.|++++|.+..+++..+..+++|+.|++++|.++.++. .+..
T Consensus 187 l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~l~~ 262 (332)
T 2ft3_A 187 IPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-GLPD 262 (332)
T ss_dssp CCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT-TGGG
T ss_pred cCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh-hhhc
Confidence 765432 789999999999999988889999999999999999999988788999999999999999998865 4788
Q ss_pred CCCCCeeecccccccccCccccCCC------CCCcEEeCCCCCCc--ccCcccccCCCCCcEEEccCCc
Q psy12291 284 LTNLTALFLNNNLLRYLDTKAFEPM------LHLKKLQLDSNKLQ--YLATDSLSLLPNLITLKLAKNP 344 (404)
Q Consensus 284 ~~~L~~L~l~~n~i~~~~~~~~~~l------~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~l~l~~Np 344 (404)
+++|++|++++|+++.++...|... +.|+.|++++|.+. .+++..+..+++|+.+++++|.
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 9999999999999999988777653 67899999999988 6778888899999999999874
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.6e-34 Score=260.42 Aligned_cols=269 Identities=26% Similarity=0.360 Sum_probs=168.0
Q ss_pred CCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECC
Q psy12291 70 KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS 149 (404)
Q Consensus 70 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 149 (404)
+++.++++++.++.+|... .+++++|++++|.++.+++..|.++++|++|++++|.++.+.+..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 3444555554444444322 2344555555555555544444555555555555555554444444455555555555
Q ss_pred CCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcc--cCCCccCCCCCCCEEECCCCcCCC
Q psy12291 150 QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSF--IRPGLFNYFKHLTFLELSENWISS 227 (404)
Q Consensus 150 ~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~ 227 (404)
+|.+..++...+ ++|++|++++|.++.+++..|..+++|++|++++|.+.. ..+..+..+++|++|++++|.+..
T Consensus 109 ~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 555444432221 355555555555555554445555555555555555532 334455566666666666666665
Q ss_pred CChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCC
Q psy12291 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEP 307 (404)
Q Consensus 228 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 307 (404)
++... .++|++|++++|.+..+++..+..+++|+.|++++|.++.+++..+..+++|++|++++|+++.++. .+..
T Consensus 186 l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~l~~ 261 (330)
T 1xku_A 186 IPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLAD 261 (330)
T ss_dssp CCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-TTTT
T ss_pred CCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh-hhcc
Confidence 54322 2577888888888877766677778888888888888888777777788888888888888887643 4677
Q ss_pred CCCCcEEeCCCCCCcccCcccccC------CCCCcEEEccCCccccc
Q psy12291 308 MLHLKKLQLDSNKLQYLATDSLSL------LPNLITLKLAKNPWHCD 348 (404)
Q Consensus 308 l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~l~l~~Np~~C~ 348 (404)
+++|++|++++|++++++...+.. .+.++.+++.+||+.+.
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence 888888888888888887766643 37889999999998653
No 29
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-35 Score=297.28 Aligned_cols=326 Identities=24% Similarity=0.228 Sum_probs=239.6
Q ss_pred CCCceEEecCCCCC-ccCCCCCCCCCeeEEEcCCCCCc-ccChhhcCCCCCCCEEEccCCcCc-ccCcccccC-------
Q psy12291 22 PEIHTLSCWKQDME-ELPFDQIIPVDIRVIDLGINQLS-TLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFIS------- 91 (404)
Q Consensus 22 ~~~~~~~~~~~~l~-~ip~~~~~~~~l~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~------- 91 (404)
+..+.++..++.+. .+|.......++++|++++|.+. .++...|.++++|++|++++|.+. .++.. +..
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~ 372 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLT 372 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcE
Confidence 34677888877776 34433334457888888888876 555555788888888888888776 33322 222
Q ss_pred --------------------CCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCC
Q psy12291 92 --------------------TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN 151 (404)
Q Consensus 92 --------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~ 151 (404)
+++|++|++++|.++...+..+.++++|++|++++|.++...+..+..+++|+.|++++|
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 344555555555555433344666777777777777776555555677777777777777
Q ss_pred cccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChh
Q psy12291 152 VLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGD 231 (404)
Q Consensus 152 ~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 231 (404)
.+....+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+.
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence 77766666777777788888888877766666677778888888888887777677777788888888888888766667
Q ss_pred hhcCCCCCcEEECCCCCCc-ccCcc-------------------------------------------------------
Q psy12291 232 EFSQLTSLKELHLGQNYIE-TIPAG------------------------------------------------------- 255 (404)
Q Consensus 232 ~~~~l~~L~~L~l~~~~l~-~~~~~------------------------------------------------------- 255 (404)
.+..+++|+.|++++|.+. .+|..
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence 7778888888888887665 22221
Q ss_pred --------------cccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCC
Q psy12291 256 --------------SFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKL 321 (404)
Q Consensus 256 --------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 321 (404)
.+..+++|+.|++++|.+++..+..++.++.|++|+|++|+++...+..+..+++|+.|+|++|++
T Consensus 613 ~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp SCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred cccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 123356788888888888877777888899999999999999877788888899999999999999
Q ss_pred cccCcccccCCCCCcEEEccCCccccc
Q psy12291 322 QYLATDSLSLLPNLITLKLAKNPWHCD 348 (404)
Q Consensus 322 ~~~~~~~~~~l~~L~~l~l~~Np~~C~ 348 (404)
++..+..+..+++|+.|++++|++...
T Consensus 693 ~g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 693 DGRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp EECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred cCcCChHHhCCCCCCEEECcCCccccc
Confidence 988788888999999999999988643
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.9e-35 Score=271.82 Aligned_cols=316 Identities=21% Similarity=0.283 Sum_probs=264.0
Q ss_pred CCceEEecCCCCCccCCCC-CCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCC
Q psy12291 23 EIHTLSCWKQDMEELPFDQ-IIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLS 101 (404)
Q Consensus 23 ~~~~~~~~~~~l~~ip~~~-~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 101 (404)
..+.++..++.++.+|... ....++++|++++|.+..+.+.+|.++++|++|++++|.+..+++..|..+++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 3567788888888888642 123579999999999999998899999999999999999999999889999999999999
Q ss_pred CCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccC----------------Cc
Q psy12291 102 QNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSG----------------MY 165 (404)
Q Consensus 102 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~----------------l~ 165 (404)
+|.++.++...|..+++|++|++++|.++.+++..|..+++|+.|++++|.+..+....+.. .+
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 205 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI 205 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCS
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCC
Confidence 99999999988899999999999999999998888999999999999999988765433322 23
Q ss_pred cCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECC
Q psy12291 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLG 245 (404)
Q Consensus 166 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 245 (404)
+|++|++++|.+..++.. ..++|+.|++++|.++.. ..+..+++|++|++++|.+..+.+..+..+++|++|+++
T Consensus 206 ~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 206 AVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280 (390)
T ss_dssp SCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred cceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence 456666666666665543 347899999999999875 468889999999999999999888889999999999999
Q ss_pred CCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccC
Q psy12291 246 QNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLA 325 (404)
Q Consensus 246 ~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 325 (404)
+|.+..++. .+..+++|+.|++++|.++.++.. +..+++|++|++++|+++.++ +..+++|+.|++++|++....
T Consensus 281 ~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 281 NNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp SSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH
T ss_pred CCcCcccCc-ccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchh
Confidence 999999876 457789999999999999988653 677899999999999999885 567789999999999998643
Q ss_pred cccccCCCCCcEEEccCCccccccC
Q psy12291 326 TDSLSLLPNLITLKLAKNPWHCDCA 350 (404)
Q Consensus 326 ~~~~~~l~~L~~l~l~~Np~~C~c~ 350 (404)
.. .-+..+....+.+++..|.+.
T Consensus 356 ~~--~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 356 LR--ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp HH--HHTTTCCTTTBCCCCSCCCTT
T ss_pred HH--HHHHHHHhhcccccCceeccc
Confidence 22 223344444567888888754
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.7e-33 Score=257.82 Aligned_cols=283 Identities=22% Similarity=0.333 Sum_probs=253.8
Q ss_pred CCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEc
Q psy12291 45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL 124 (404)
Q Consensus 45 ~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 124 (404)
.++++|+++++.+..+. .+..+++|++|++++|++.+++. |..+++|++|++++|.++.++. +..+++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred ccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCchH--HcCCCcCCEEEC
Confidence 47999999999998875 48889999999999999999877 7899999999999999998864 889999999999
Q ss_pred cCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCccc
Q psy12291 125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204 (404)
Q Consensus 125 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 204 (404)
++|.+..++. +..+++|+.|++++|...... ..+..+++|++|++++|.+..++. +..+++|+.|++++|.+..+
T Consensus 118 ~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 118 NEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp TTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred cCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence 9999998876 778999999999999544433 348889999999999999988765 68899999999999999877
Q ss_pred CCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCC
Q psy12291 205 RPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGL 284 (404)
Q Consensus 205 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 284 (404)
.+ +..+++|+.+++++|.+....+ +..+++|++|++++|.+..++. +..+++|+.|++++|.++.++ .+..+
T Consensus 193 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l 264 (347)
T 4fmz_A 193 SP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDL 264 (347)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTC
T ss_pred cc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhcC
Confidence 55 7889999999999999988764 7889999999999999998876 788999999999999999874 58889
Q ss_pred CCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccc
Q psy12291 285 TNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCD 348 (404)
Q Consensus 285 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~ 348 (404)
++|++|++++|+++.+ ..+..+++|+.|++++|+++..++..+..+++|+.|++++|++...
T Consensus 265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 9999999999999987 4578899999999999999999888899999999999999998653
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.9e-34 Score=282.88 Aligned_cols=318 Identities=21% Similarity=0.266 Sum_probs=201.7
Q ss_pred CCCceEEecCCCCCc------------------cCCCCC--CCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCc-
Q psy12291 22 PEIHTLSCWKQDMEE------------------LPFDQI--IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNH- 80 (404)
Q Consensus 22 ~~~~~~~~~~~~l~~------------------ip~~~~--~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~- 80 (404)
+..+.++..++.++. +|.... ...++++|++++|.+.+..+..|.++++|++|++++|+
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 457888999998988 888766 56789999999998887777888899999999999997
Q ss_pred Ccc--cCcccccCC------CCCCEEeCCCCCCcccCc-cccCCCCCCcEEEccCCCCC-cCCCccCCCCCCCCEEECCC
Q psy12291 81 LSE--LPGKLFIST------INLSTMDLSQNLIKTLPS-TFFKGAIRLTVVQLSYNAIE-SLPANVFHDLISLEELDLSQ 150 (404)
Q Consensus 81 l~~--~~~~~~~~~------~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~ 150 (404)
+++ +|.. +..+ ++|++|++++|.++.+|. ..+..+++|++|++++|.++ .++ .+..+++|+.|++++
T Consensus 286 l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 286 ISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAY 362 (636)
T ss_dssp SCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCS
T ss_pred CccccchHH-HHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCC
Confidence 775 5543 3333 788888888888887776 24778888888888888888 666 466777778888877
Q ss_pred CcccccccccccCCcc-CcEEeccCCCCCCCCCCccCCC--CCCCeEecCCCcCcccCCCccC-------CCCCCCEEEC
Q psy12291 151 NVLTSIQYGTFSGMYS-LKRLKLQSNRINQLPPGIFDDL--KYLDFLSLRNNRLSFIRPGLFN-------YFKHLTFLEL 220 (404)
Q Consensus 151 ~~l~~~~~~~l~~l~~-L~~L~l~~~~l~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l 220 (404)
|.+..++ ..+.++++ |++|++++|.++.++.. +..+ ++|++|++++|.+....+..+. .+++|++|++
T Consensus 363 N~l~~lp-~~l~~l~~~L~~L~Ls~N~l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 363 NQITEIP-ANFCGFTEQVENLSFAHNKLKYIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp SEEEECC-TTSEEECTTCCEEECCSSCCSSCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred Ccccccc-HhhhhhcccCcEEEccCCcCcccchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 7777444 34666666 77777777777766542 3332 2566666666666555444444 4455666666
Q ss_pred CCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCC-------CCcEEECcCCCccccccccc-cCCCCCCeeec
Q psy12291 221 SENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ-------SLEKLFLYSNNIQELHAGTF-AGLTNLTALFL 292 (404)
Q Consensus 221 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~l 292 (404)
++|.+..++...+..+++|++|++++|.+..++...+.... +|+.|++++|.++.++...+ ..+++|++|++
T Consensus 441 s~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~L 520 (636)
T 4eco_A 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520 (636)
T ss_dssp CSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEEC
T ss_pred cCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEEC
Confidence 66655555544444455555555555555544443332221 44555555554444433222 24444444444
Q ss_pred ccccccc-----------------------------cCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCC
Q psy12291 293 NNNLLRY-----------------------------LDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343 (404)
Q Consensus 293 ~~n~i~~-----------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~N 343 (404)
++|+++. ..+..+..+++|++|++++|+++.++.... ++|+.|++++|
T Consensus 521 s~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N 597 (636)
T 4eco_A 521 SYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDN 597 (636)
T ss_dssp CSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC---TTCCEEECCSC
T ss_pred CCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh---CcCCEEECcCC
Confidence 4444444 334444455555666666665555544311 55666666666
Q ss_pred cccc
Q psy12291 344 PWHC 347 (404)
Q Consensus 344 p~~C 347 (404)
|+.|
T Consensus 598 ~l~~ 601 (636)
T 4eco_A 598 PNIS 601 (636)
T ss_dssp TTCE
T ss_pred CCcc
Confidence 6654
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.1e-33 Score=267.34 Aligned_cols=303 Identities=28% Similarity=0.420 Sum_probs=179.6
Q ss_pred CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCC
Q psy12291 23 EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ 102 (404)
Q Consensus 23 ~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 102 (404)
..+.+++.+.+++.+|.. ....++++|++++|.+..+.+ +.++++|++|++++|.+..+++ |..+++|++|++++
T Consensus 47 ~l~~L~l~~~~i~~l~~~-~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGV-EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 121 (466)
T ss_dssp TCCEEECCSSCCCCCTTG-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred cccEEecCCCCCccCcch-hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCC
Confidence 466777777777777642 234578888888887777654 7777788888888887777765 67777788888887
Q ss_pred CCCcccCccccCCCCCCcEEEccCCCCCcCCC-------------------ccCCCCCCCCEEECCCCcccccccccccC
Q psy12291 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPA-------------------NVFHDLISLEELDLSQNVLTSIQYGTFSG 163 (404)
Q Consensus 103 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------------------~~~~~l~~L~~L~l~~~~l~~~~~~~l~~ 163 (404)
|.++.+++ +..+++|++|++++|.+..++. ..+..+++|+.|++++|.+..+. .+..
T Consensus 122 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~ 197 (466)
T 1o6v_A 122 NQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS--VLAK 197 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG--GGGG
T ss_pred CCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh--hhcc
Confidence 77777665 6677777777777766554331 11455667777777777766553 3566
Q ss_pred CccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEE
Q psy12291 164 MYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELH 243 (404)
Q Consensus 164 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 243 (404)
+++|++|++++|.+..+++ +..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+...++ +..+++|+.|+
T Consensus 198 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 271 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 271 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred CCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEE
Confidence 6677777777776665544 34556666666666655543 234455555555555555554432 44555555555
Q ss_pred CCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCc--------------------c
Q psy12291 244 LGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDT--------------------K 303 (404)
Q Consensus 244 l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~--------------------~ 303 (404)
+++|.+..+++ +..+++|+.|++++|.++++++ +..+++|++|++++|+++.+.+ .
T Consensus 272 l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 347 (466)
T 1o6v_A 272 LGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS 347 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred CCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCch
Confidence 55555554443 4444555555555555444433 3444444444444444444332 2
Q ss_pred ccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccc
Q psy12291 304 AFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWH 346 (404)
Q Consensus 304 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~ 346 (404)
.+..+++|+.|++++|+++++.+ +..+++|+.|++++|+|.
T Consensus 348 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 348 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 34444555555555555554443 444555555555555543
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.5e-34 Score=280.36 Aligned_cols=323 Identities=19% Similarity=0.246 Sum_probs=220.8
Q ss_pred CCCceEEecCCCCC-ccCCCCCCCCCeeEEEcCCCC-Ccc-cChhhcCCC------CCCCEEEccCCcCcccCc-ccccC
Q psy12291 22 PEIHTLSCWKQDME-ELPFDQIIPVDIRVIDLGINQ-LST-LSKDAFTGL------YKLTELKLRKNHLSELPG-KLFIS 91 (404)
Q Consensus 22 ~~~~~~~~~~~~l~-~ip~~~~~~~~l~~L~l~~~~-i~~-~~~~~~~~~------~~L~~L~l~~~~l~~~~~-~~~~~ 91 (404)
+..+.++..++.+. .+|.......++++|++++|. ++. ..+..+.++ ++|++|++++|+++.+|. ..|..
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~ 328 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTT
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhcc
Confidence 45777777777653 455444444567777777776 664 333334333 566666666666665554 23455
Q ss_pred CCCCCEEeCCCCCCc-ccC----------------------ccccCCCCC-CcEEEccCCCCCcCCCccCCCC--CCCCE
Q psy12291 92 TINLSTMDLSQNLIK-TLP----------------------STFFKGAIR-LTVVQLSYNAIESLPANVFHDL--ISLEE 145 (404)
Q Consensus 92 ~~~L~~L~l~~n~l~-~~~----------------------~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l--~~L~~ 145 (404)
+++|++|++++|.++ .+| .. +..+++ |++|++++|.++.++.. +... ++|+.
T Consensus 329 l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~-~~~~~l~~L~~ 406 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHNKLKYIPNI-FDAKSVSVMSA 406 (636)
T ss_dssp CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSSCCSSCCSC-CCTTCSSCEEE
T ss_pred CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHh-hhhhcccCcEEEccCCcCcccchh-hhhcccCccCE
Confidence 566666666666555 444 33 444555 66666666666655542 2332 25666
Q ss_pred EECCCCccccccccccc-------CCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCC-----
Q psy12291 146 LDLSQNVLTSIQYGTFS-------GMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK----- 213 (404)
Q Consensus 146 L~l~~~~l~~~~~~~l~-------~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~----- 213 (404)
|++++|.+....+..+. .+++|++|++++|.++.++...+..+++|++|++++|.++.++...+....
T Consensus 407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486 (636)
T ss_dssp EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence 66666666665555555 566888888888888888877777788899999999988877665555443
Q ss_pred --CCCEEECCCCcCCCCChhhhc--CCCCCcEEECCCCCCcccCcccccCCCCCcEEEC------cCCCccccccccccC
Q psy12291 214 --HLTFLELSENWISSLNGDEFS--QLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL------YSNNIQELHAGTFAG 283 (404)
Q Consensus 214 --~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L------~~n~l~~~~~~~~~~ 283 (404)
+|+.|++++|.+..++. .+. .+++|++|++++|.+..+|. .+..+++|+.|++ ++|.+....+..+..
T Consensus 487 l~~L~~L~Ls~N~l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 487 TYLLTSIDLRFNKLTKLSD-DFRATTLPYLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp GGGCCEEECCSSCCCBCCG-GGSTTTCTTCCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred cCCccEEECcCCcCCccCh-hhhhccCCCcCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 89999999999987664 454 88999999999999998776 5678999999999 456677666778889
Q ss_pred CCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccC--CCCCcEEEccCCccccccCc
Q psy12291 284 LTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSL--LPNLITLKLAKNPWHCDCAI 351 (404)
Q Consensus 284 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~l~l~~Np~~C~c~~ 351 (404)
+++|++|++++|+++.++.... ++|+.|++++|++..++...+.. ...+..+........++|+.
T Consensus 565 l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~ 631 (636)
T 4eco_A 565 CPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631 (636)
T ss_dssp CSSCCEEECCSSCCCBCCSCCC---TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGG
T ss_pred CCCCCEEECCCCcCCccCHhHh---CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCcc
Confidence 9999999999999988876533 79999999999999876433221 12344555555555566653
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.1e-33 Score=265.28 Aligned_cols=281 Identities=25% Similarity=0.378 Sum_probs=246.0
Q ss_pred CCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEc
Q psy12291 45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL 124 (404)
Q Consensus 45 ~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 124 (404)
.+++.|+++++.+..++ .+..+++|++|++++|.+..+++ |..+++|++|++++|.+..+++ +.++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 47999999999998875 47889999999999999999886 7899999999999999998887 889999999999
Q ss_pred cCCCCCcCCCccCCCCCCCCEEECCCCccccccc-------------------ccccCCccCcEEeccCCCCCCCCCCcc
Q psy12291 125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQY-------------------GTFSGMYSLKRLKLQSNRINQLPPGIF 185 (404)
Q Consensus 125 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-------------------~~l~~l~~L~~L~l~~~~l~~~~~~~~ 185 (404)
++|.++.++. +..+++|++|++++|.+..+.. ..+.++++|+.|++++|.+..++. +
T Consensus 120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--l 195 (466)
T 1o6v_A 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--L 195 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG--G
T ss_pred CCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh--h
Confidence 9999998876 7889999999999998765432 235677899999999999988753 6
Q ss_pred CCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcE
Q psy12291 186 DDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEK 265 (404)
Q Consensus 186 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 265 (404)
..+++|++|++++|.+....+ +..+++|+.|++++|.+..++ .+..+++|+.|++++|.+..+++ +..+++|+.
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 269 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCccccchh--hhcCCCCCE
Confidence 889999999999999987755 678999999999999998874 67899999999999999998875 788999999
Q ss_pred EECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCcc
Q psy12291 266 LFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW 345 (404)
Q Consensus 266 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~ 345 (404)
|++++|.++.+++ +..+++|++|++++|+++.+++ +..+++|+.|++++|+++++++ +..+++|+.|++++|++
T Consensus 270 L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 270 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCC
T ss_pred EECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCcc
Confidence 9999999999876 7889999999999999998765 6788999999999999988765 56777888888887776
Q ss_pred cc
Q psy12291 346 HC 347 (404)
Q Consensus 346 ~C 347 (404)
..
T Consensus 344 ~~ 345 (466)
T 1o6v_A 344 SD 345 (466)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 36
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=100.00 E-value=2.3e-33 Score=248.55 Aligned_cols=263 Identities=28% Similarity=0.489 Sum_probs=177.6
Q ss_pred CceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCC
Q psy12291 17 PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLS 96 (404)
Q Consensus 17 ~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 96 (404)
.|.|......++|.+.++..+|.. ++.++++|++++|.++.+.+..|.++++|++|++++|++..++...|..+++|+
T Consensus 2 ~C~~~~~~~~~~c~~~~l~~ip~~--l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 79 (276)
T 2z62_A 2 PCVEVVPNITYQCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79 (276)
T ss_dssp CSEEEETTTEEECTTSCCSSCCSS--SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CceeccCCceEEecCCCccccCCC--CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCC
Confidence 577776677899999999999986 678899999999999988887888889999999999988888887788888888
Q ss_pred EEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCC
Q psy12291 97 TMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNR 176 (404)
Q Consensus 97 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 176 (404)
+|++++|.++.+++..|.++++|++|++++|.+..++...+..+++|++|++++|.
T Consensus 80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------------------------ 135 (276)
T 2z62_A 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL------------------------ 135 (276)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC------------------------
T ss_pred EEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc------------------------
Confidence 88888888887776667777777777777777666555445555555555555544
Q ss_pred CCCCC-CCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcc
Q psy12291 177 INQLP-PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAG 255 (404)
Q Consensus 177 l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 255 (404)
++.+. +..+..+++|++|++++|+++. +++..+..+++|+
T Consensus 136 l~~~~l~~~~~~l~~L~~L~Ls~N~l~~------------------------~~~~~~~~l~~L~--------------- 176 (276)
T 2z62_A 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQS------------------------IYCTDLRVLHQMP--------------- 176 (276)
T ss_dssp CCCCCCCGGGGGCTTCCEEECCSSCCCE------------------------ECGGGGHHHHTCT---------------
T ss_pred cceecCchhhccCCCCCEEECCCCCCCc------------------------CCHHHhhhhhhcc---------------
Confidence 43322 1222333333333333332222 2111121111111
Q ss_pred cccCCCCCc-EEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCC
Q psy12291 256 SFANLQSLE-KLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPN 334 (404)
Q Consensus 256 ~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 334 (404)
.+. .|++++| +++.+++..+.. .+|+.|++++|+++.++...+..+++
T Consensus 177 ------~l~l~L~ls~n------------------------~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~ 225 (276)
T 2z62_A 177 ------LLNLSLDLSLN------------------------PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTS 225 (276)
T ss_dssp ------TCCEEEECCSS------------------------CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred ------ccceeeecCCC------------------------cccccCccccCC-CcccEEECCCCceeecCHhHhccccc
Confidence 111 3344444 333333333332 26777777888888877777888999
Q ss_pred CcEEEccCCccccccC-cHHHHHHHHhccCcccCCCCeeCCCC
Q psy12291 335 LITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGPG 376 (404)
Q Consensus 335 L~~l~l~~Np~~C~c~-~~~~~~~~~~~~~~~~~~~~~C~~p~ 376 (404)
|+.|++++|||.|+|+ +.|+..|+...... ......|..|+
T Consensus 226 L~~L~l~~N~~~c~c~~l~~l~~~~~~~~~~-~~~~~~C~~~~ 267 (276)
T 2z62_A 226 LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK-EQGSAKCSGSG 267 (276)
T ss_dssp CCEEECCSSCBCCCTTTTHHHHHHHHHTGGG-BCSCCBBTTTC
T ss_pred ccEEEccCCcccccCCchHHHHHHHHhcccc-cCCCceeeCCC
Confidence 9999999999999996 78899999876544 33467899874
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.4e-33 Score=278.83 Aligned_cols=319 Identities=17% Similarity=0.201 Sum_probs=207.1
Q ss_pred CCCceEEecCCCCCc------------------cCCCCC--CCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCc-
Q psy12291 22 PEIHTLSCWKQDMEE------------------LPFDQI--IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNH- 80 (404)
Q Consensus 22 ~~~~~~~~~~~~l~~------------------ip~~~~--~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~- 80 (404)
+..+.++..++.++. +|.... ...+|++|++++|.+....+..|.++++|+.|++++|+
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 457889999999998 888765 56789999999999877777889999999999999997
Q ss_pred Ccc--cCcc------cccCCCCCCEEeCCCCCCcccCc-cccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCC
Q psy12291 81 LSE--LPGK------LFISTINLSTMDLSQNLIKTLPS-TFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN 151 (404)
Q Consensus 81 l~~--~~~~------~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~ 151 (404)
++. +|.. .+..+++|++|++++|.++.+|. ..+.++++|+.|++++|.++.++ .|..+++|+.|++++|
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYN 605 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSS
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCC
Confidence 775 5542 23455689999999999998886 34888999999999999998777 5788889999999999
Q ss_pred cccccccccccCCcc-CcEEeccCCCCCCCCCCccCCCC--CCCeEecCCCcCcccCCCcc---C--CCCCCCEEECCCC
Q psy12291 152 VLTSIQYGTFSGMYS-LKRLKLQSNRINQLPPGIFDDLK--YLDFLSLRNNRLSFIRPGLF---N--YFKHLTFLELSEN 223 (404)
Q Consensus 152 ~l~~~~~~~l~~l~~-L~~L~l~~~~l~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~---~--~l~~L~~L~l~~~ 223 (404)
.+..++ ..+..+++ |+.|++++|.++.++. .+..++ +|+.|++++|.+.+..+... . ..++|+.|++++|
T Consensus 606 ~l~~lp-~~l~~l~~~L~~L~Ls~N~L~~lp~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 606 QIEEIP-EDFCAFTDQVEGLGFSHNKLKYIPN-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp CCSCCC-TTSCEECTTCCEEECCSSCCCSCCS-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred ccccch-HHHhhccccCCEEECcCCCCCcCch-hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 888554 45777777 9999999988887664 344443 37777777776654332211 1 2235566666666
Q ss_pred cCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCC-------CCCcEEECcCCCccccccccc-cCCCCCCeeecccc
Q psy12291 224 WISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL-------QSLEKLFLYSNNIQELHAGTF-AGLTNLTALFLNNN 295 (404)
Q Consensus 224 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l-------~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~l~~n 295 (404)
.+..++...+..+++|+.|++++|.+..++...+... ++|+.|+|++|.++.++...+ ..+++|+.|+|++|
T Consensus 684 ~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N 763 (876)
T 4ecn_A 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN 763 (876)
T ss_dssp CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSS
T ss_pred cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCC
Confidence 6555554444455555555555555555554333222 155555555555554443222 24555555555555
Q ss_pred cccccCccccCCCCCCcEEeCCC------CCCcccCcccccCCCCCcEEEccCCcc
Q psy12291 296 LLRYLDTKAFEPMLHLKKLQLDS------NKLQYLATDSLSLLPNLITLKLAKNPW 345 (404)
Q Consensus 296 ~i~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~l~l~~Np~ 345 (404)
+++.+ +..+..+++|+.|+|++ |++.+..+..+..+++|+.|+|++|++
T Consensus 764 ~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 764 CFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 55554 22233444555554433 333333333444444444444444444
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.3e-33 Score=274.83 Aligned_cols=290 Identities=22% Similarity=0.299 Sum_probs=248.7
Q ss_pred CceEEecCCCCCccCCCCC-CCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCC
Q psy12291 24 IHTLSCWKQDMEELPFDQI-IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ 102 (404)
Q Consensus 24 ~~~~~~~~~~l~~ip~~~~-~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 102 (404)
.+.++..++.+..+|...+ ...++++|++++|.+..+.+..|.++++|+.|++++|.+..+++..|..+++|++|++++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 132 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence 4567777777778876421 135799999999999999988999999999999999999999999999999999999999
Q ss_pred CCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccC----------------Ccc
Q psy12291 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSG----------------MYS 166 (404)
Q Consensus 103 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~----------------l~~ 166 (404)
|.++.+|+..|.++++|++|++++|.++.+++..|..+++|+.|++++|.+..+....+.. .++
T Consensus 133 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~ 212 (597)
T 3oja_B 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA 212 (597)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTT
T ss_pred CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCch
Confidence 9999999988899999999999999999999888999999999999999988765433322 234
Q ss_pred CcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCC
Q psy12291 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQ 246 (404)
Q Consensus 167 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 246 (404)
|+.|++++|.+..++... .++|+.|++++|.++.. ..+..+++|+.|++++|.+..+.+..+..+++|+.|++++
T Consensus 213 L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 213 VEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp CSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred hheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 556666666666555433 36899999999999874 5688899999999999999999888999999999999999
Q ss_pred CCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcc
Q psy12291 247 NYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQY 323 (404)
Q Consensus 247 ~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 323 (404)
|.+..++. .+..+++|+.|+|++|.++.++. .+..+++|++|++++|.++.++ +..+++|+.|++++|.+..
T Consensus 288 N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~-~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 288 NRLVALNL-YGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SCCCEEEC-SSSCCTTCCEEECCSSCCCCCGG-GHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCc-ccccCCCCcEEECCCCCCCccCc-ccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 99999876 45678999999999999998865 4678899999999999999875 5667899999999999875
No 39
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-33 Score=283.65 Aligned_cols=277 Identities=19% Similarity=0.191 Sum_probs=173.8
Q ss_pred hhcCCCCCCCEEEccCCcCcc------------------cCccc-ccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEE
Q psy12291 63 DAFTGLYKLTELKLRKNHLSE------------------LPGKL-FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQ 123 (404)
Q Consensus 63 ~~~~~~~~L~~L~l~~~~l~~------------------~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 123 (404)
..|.++++|+.|+|++|.+++ +|... |..+++|++|++++|.+....+..|.++++|+.|+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 457778888888888888887 66553 33788888888888875543334477777888888
Q ss_pred ccCCC-CCc--CCCc------cCCCCCCCCEEECCCCccccccc-ccccCCccCcEEeccCCCCCCCCCCccCCCCCCCe
Q psy12291 124 LSYNA-IES--LPAN------VFHDLISLEELDLSQNVLTSIQY-GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF 193 (404)
Q Consensus 124 l~~n~-l~~--~~~~------~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~ 193 (404)
+++|. ++. +|.. .+..+++|+.|++++|.+..++. ..+.++++|+.|++++|.++.++ .|..+++|+.
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~ 599 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTD 599 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESE
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceE
Confidence 88776 653 3321 23445577777777777774442 25667777777777777777655 4667777777
Q ss_pred EecCCCcCcccCCCccCCCCC-CCEEECCCCcCCCCChhhhcCC-------------------------------CCCcE
Q psy12291 194 LSLRNNRLSFIRPGLFNYFKH-LTFLELSENWISSLNGDEFSQL-------------------------------TSLKE 241 (404)
Q Consensus 194 L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l-------------------------------~~L~~ 241 (404)
|++++|.+..+ +..+..+++ |+.|++++|.+..++ ..+..+ ++|+.
T Consensus 600 L~Ls~N~l~~l-p~~l~~l~~~L~~L~Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 600 LKLDYNQIEEI-PEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp EECCSSCCSCC-CTTSCEECTTCCEEECCSSCCCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred EECcCCccccc-hHHHhhccccCCEEECcCCCCCcCc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 77777776643 334556666 777777766666443 222222 24555
Q ss_pred EECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCC-------CCCCeeecccccccccCcccc-CCCCCCcE
Q psy12291 242 LHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGL-------TNLTALFLNNNLLRYLDTKAF-EPMLHLKK 313 (404)
Q Consensus 242 L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-------~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~ 313 (404)
|++++|.+..++...+..+++|+.|+|++|.++.++...+... ++|++|+|++|+++.++.... ..+++|+.
T Consensus 678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~ 757 (876)
T 4ecn_A 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN 757 (876)
T ss_dssp EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCE
T ss_pred EEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCE
Confidence 5555555555555444456666666666666666655444332 266667777666665543332 35666777
Q ss_pred EeCCCCCCcccCcccccCCCCCcEEEccCCc
Q psy12291 314 LQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344 (404)
Q Consensus 314 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np 344 (404)
|+|++|++++++. .+..+++|+.|+|++|+
T Consensus 758 L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 758 MDVSYNCFSSFPT-QPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp EECCSSCCSSCCC-GGGGCTTCCEEECCCCB
T ss_pred EEeCCCCCCccch-hhhcCCCCCEEECCCCC
Confidence 7777777666533 35566677777776655
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.4e-32 Score=267.76 Aligned_cols=154 Identities=25% Similarity=0.294 Sum_probs=138.7
Q ss_pred eeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccC
Q psy12291 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSY 126 (404)
Q Consensus 47 l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 126 (404)
-++++.+++.++.++.. +. +++++|++++|.++++++..|.++++|++|++++|.++.+++..|.++++|++|++++
T Consensus 13 ~~~~~c~~~~l~~ip~~-~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDD-IP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TTEEECTTSCCSSCCTT-SC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEccCCCcccCCCC-CC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 35789999999988753 33 7899999999999999998899999999999999999999888899999999999999
Q ss_pred CCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCC-CCccCCCCCCCeEecCCCcCcc
Q psy12291 127 NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP-PGIFDDLKYLDFLSLRNNRLSF 203 (404)
Q Consensus 127 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~ 203 (404)
|.++.+++..|.++++|++|++++|.+..+.+..+.++++|++|++++|.+..+. +..|..+++|++|++++|.++.
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 9999998888999999999999999999998888999999999999999998643 5668899999999998886553
No 41
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=100.00 E-value=6.1e-32 Score=238.38 Aligned_cols=221 Identities=35% Similarity=0.604 Sum_probs=161.7
Q ss_pred cCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECC
Q psy12291 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLG 245 (404)
Q Consensus 166 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 245 (404)
++++|++++|.++.+++..|..+++|++|++++|.++.+++..|..+++|++|++++|.+..+++..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 34444444444444444444444455555555554444444444555555666666666665555566667777777777
Q ss_pred CCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccC
Q psy12291 246 QNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLA 325 (404)
Q Consensus 246 ~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 325 (404)
+|.+..+++..+..+++|+.|++++|.++.++...|..+++|++|++++|+++.+++..|..+++|++|++++|+++.++
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 77777777767777888888888888888887777888889999999999998888888888999999999999999999
Q ss_pred cccccCCCCCcEEEccCCccccccC-cHHHHHHHHhccCc-ccC-CCCeeCCCCCCCCCcccCCCCcC
Q psy12291 326 TDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRK-VWD-SKPTCRGPGNLGGKSVEDMSFDD 390 (404)
Q Consensus 326 ~~~~~~l~~L~~l~l~~Np~~C~c~-~~~~~~~~~~~~~~-~~~-~~~~C~~p~~l~~~~l~~~~~~~ 390 (404)
+..+..+++|+.|++++|||.|+|. +.|+..|+...... +.. ....|+.+ |+.+.++...+
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~~~~~~~~~~~~~C~~~----~~~~~~~~~~~ 261 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEKG----GKAVLEITEKD 261 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHHHHHHTTCSSTTCCBBSSS----CSBGGGCCTTT
T ss_pred HHHhccccCCCEEEecCCCeeCCCccHHHHHHHHHhhccccccCccccccCCC----CeEeEEecchh
Confidence 8888999999999999999999998 78999999876543 222 25778753 67788887666
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.9e-32 Score=263.40 Aligned_cols=291 Identities=23% Similarity=0.236 Sum_probs=231.4
Q ss_pred eeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccC
Q psy12291 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSY 126 (404)
Q Consensus 47 l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 126 (404)
.+++++++++++.++.. +. ++|++|++++|.+.++++..|..+++|++|++++|.++.+++..|.++++|++|++++
T Consensus 33 ~~~l~ls~~~L~~ip~~-~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKD-LP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCSCCTT-SC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCccCCCC-CC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 48999999999988654 32 7999999999999999988899999999999999999999888899999999999999
Q ss_pred CCCCcCCCccCCCCCCCCEEECCCCcccccc-cccccCCccCcEEeccCCCCCCCCCCccCCC-----------------
Q psy12291 127 NAIESLPANVFHDLISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQSNRINQLPPGIFDDL----------------- 188 (404)
Q Consensus 127 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l----------------- 188 (404)
|.++.++.. .+++|++|++++|.+..++ +..|.++++|++|++++|.++......+..+
T Consensus 110 N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 110 NRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp SCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSS
T ss_pred CcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeeccccccccc
Confidence 999999875 6899999999999999876 4688999999999999998764321111111
Q ss_pred ----------------------------------C---------------------------------------------
Q psy12291 189 ----------------------------------K--------------------------------------------- 189 (404)
Q Consensus 189 ----------------------------------~--------------------------------------------- 189 (404)
+
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~ 266 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH
T ss_pred CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHH
Confidence 0
Q ss_pred ----------CCCeEecCCCcCcccCCCcc--------------------------------------------------
Q psy12291 190 ----------YLDFLSLRNNRLSFIRPGLF-------------------------------------------------- 209 (404)
Q Consensus 190 ----------~L~~L~l~~~~~~~~~~~~~-------------------------------------------------- 209 (404)
+|++|++++|.+.+..+..+
T Consensus 267 ~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~ 346 (562)
T 3a79_B 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346 (562)
T ss_dssp HHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc
Confidence 23333333333331111111
Q ss_pred ---CCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCc--ccccCCCCCcEEECcCCCccc-cccccccC
Q psy12291 210 ---NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA--GSFANLQSLEKLFLYSNNIQE-LHAGTFAG 283 (404)
Q Consensus 210 ---~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~ 283 (404)
..+++|++|++++|.+....+..+..+++|+.|++++|.+..++. ..+..+++|+.|++++|.++. ++...+..
T Consensus 347 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 426 (562)
T 3a79_B 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426 (562)
T ss_dssp CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC
Confidence 566788888888888888766778888888899998888887653 357788888999999888887 77777888
Q ss_pred CCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccc
Q psy12291 284 LTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWH 346 (404)
Q Consensus 284 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~ 346 (404)
+++|++|++++|+++...+..+. ++|+.|++++|+++.++...+ .+++|+.|++++|.+.
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLK 486 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCC
T ss_pred cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCC
Confidence 88899999998888754333332 689999999999998877655 8999999999999875
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.1e-32 Score=263.11 Aligned_cols=290 Identities=24% Similarity=0.289 Sum_probs=218.3
Q ss_pred eEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCC
Q psy12291 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN 127 (404)
Q Consensus 48 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 127 (404)
++|++++|+++.++.. +. ++|++|++++|.+.++++..|..+++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 6799999999988654 43 89999999999999999888999999999999999999998778999999999999999
Q ss_pred CCCcCCCccCCCCCCCCEEECCCCcccccc-cccccCCccCcEEeccCCCCCCC-------------------------C
Q psy12291 128 AIESLPANVFHDLISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQSNRINQL-------------------------P 181 (404)
Q Consensus 128 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~l~~~-------------------------~ 181 (404)
.++.++.. .+++|++|++++|.+..+. +..++++++|++|++++|.++.. .
T Consensus 80 ~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 80 KLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp CCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred ceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccc
Confidence 99988875 6899999999999998753 46788899999999888876421 1
Q ss_pred CCccCCC-------------------------------------------------------------------------
Q psy12291 182 PGIFDDL------------------------------------------------------------------------- 188 (404)
Q Consensus 182 ~~~~~~l------------------------------------------------------------------------- 188 (404)
+..+..+
T Consensus 157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 236 (520)
T 2z7x_B 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236 (520)
T ss_dssp TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH
T ss_pred cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH
Confidence 1112221
Q ss_pred ----------CCCCeEecCCCcCcccCCCcc-------------------------------------------------
Q psy12291 189 ----------KYLDFLSLRNNRLSFIRPGLF------------------------------------------------- 209 (404)
Q Consensus 189 ----------~~L~~L~l~~~~~~~~~~~~~------------------------------------------------- 209 (404)
++|++|++++|.+.+..+..+
T Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~ 316 (520)
T 2z7x_B 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316 (520)
T ss_dssp HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccc
Confidence 145555555555442222222
Q ss_pred ----CCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCc--ccccCCCCCcEEECcCCCccc-ccccccc
Q psy12291 210 ----NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA--GSFANLQSLEKLFLYSNNIQE-LHAGTFA 282 (404)
Q Consensus 210 ----~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L~~n~l~~-~~~~~~~ 282 (404)
..+++|++|++++|.+....+..+..+++|++|++++|.+..++. ..+..+++|+.|++++|.++. ++...+.
T Consensus 317 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 456677777777777777555667777777777777777775432 346677777788887777777 6666677
Q ss_pred CCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccc
Q psy12291 283 GLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWH 346 (404)
Q Consensus 283 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~ 346 (404)
.+++|++|++++|+++...+..+. ++|+.|++++|+++.++.... .+++|+.|++++|++.
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLK 457 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCC
T ss_pred cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCC
Confidence 777788888887777654443332 678888888888887766544 7888888888888775
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4e-31 Score=249.87 Aligned_cols=295 Identities=20% Similarity=0.241 Sum_probs=245.5
Q ss_pred CCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCC
Q psy12291 22 PEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLS 101 (404)
Q Consensus 22 ~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 101 (404)
+..+.+++.++.++.+|. .....++++|++++|.++.++ +.++++|++|++++|.+++++ |..+++|++|+++
T Consensus 42 ~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD 114 (457)
T ss_dssp TTCCEEECCSSCCCCCTT-GGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECC
T ss_pred CCCCEEEccCCCcccChh-hcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCcCCEEECC
Confidence 457899999999999873 334568999999999999873 889999999999999999885 6889999999999
Q ss_pred CCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCc-ccccccccccCCccCcEEeccCCCCCCC
Q psy12291 102 QNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNV-LTSIQYGTFSGMYSLKRLKLQSNRINQL 180 (404)
Q Consensus 102 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~~~l~~~ 180 (404)
+|.++.++ +..+++|++|++++|.++.++ +..+++|+.|++++|. +..+ .+..+++|+.|++++|.++.+
T Consensus 115 ~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 115 TNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp SSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCC
T ss_pred CCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCcccee
Confidence 99999885 788999999999999999874 6788999999999994 4444 477889999999999999997
Q ss_pred CCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCC
Q psy12291 181 PPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL 260 (404)
Q Consensus 181 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l 260 (404)
+ +..+++|+.|++++|.++.+ .+..+++|++|++++|.+..++ +..+++|+.|++++|.+..++. ..+
T Consensus 186 ~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~---~~l 253 (457)
T 3bz5_A 186 D---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDV---STL 253 (457)
T ss_dssp C---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCC---TTC
T ss_pred c---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCH---HHC
Confidence 6 67889999999999999876 3788999999999999999875 7788999999999999998874 355
Q ss_pred CCCcEEECcCCCcccccc--------ccccCCCCCCeeecccccccc--------cCccccCCCCCCcEEeCCCCCCccc
Q psy12291 261 QSLEKLFLYSNNIQELHA--------GTFAGLTNLTALFLNNNLLRY--------LDTKAFEPMLHLKKLQLDSNKLQYL 324 (404)
Q Consensus 261 ~~L~~L~L~~n~l~~~~~--------~~~~~~~~L~~L~l~~n~i~~--------~~~~~~~~l~~L~~L~l~~n~l~~~ 324 (404)
++|+.|++++|.++.+.. ..++.+++|++|++++|.... +..-.+..+++|++|++++|+++++
T Consensus 254 ~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l 333 (457)
T 3bz5_A 254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL 333 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC
T ss_pred CCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc
Confidence 667766666666654432 124567999999999986322 1112356778999999999999997
Q ss_pred CcccccCCCCCcEEEccCCcccc
Q psy12291 325 ATDSLSLLPNLITLKLAKNPWHC 347 (404)
Q Consensus 325 ~~~~~~~l~~L~~l~l~~Np~~C 347 (404)
+ +..+++|+.|++++|.+..
T Consensus 334 ~---l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 334 D---VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp C---CTTCTTCSEEECCSSCCCB
T ss_pred c---cccCCcCcEEECCCCCCCC
Confidence 3 7889999999999999863
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-32 Score=275.62 Aligned_cols=295 Identities=24% Similarity=0.306 Sum_probs=248.1
Q ss_pred eEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCC-CCcccCccccCCCCCCcEEEccC
Q psy12291 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN-LIKTLPSTFFKGAIRLTVVQLSY 126 (404)
Q Consensus 48 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~ 126 (404)
+..+.++++++.++. -.++|++|+|++|.++.+.+..|.++++|++|++++| .+..+++..|.++++|++|++++
T Consensus 7 ~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 568889999998874 3478999999999999998888999999999999999 56678778899999999999999
Q ss_pred CCCCcCCCccCCCCCCCCEEECCCCcccccc--cccccCCccCcEEeccCCCCCCCCC-CccCCCCCCCeEecCCCcCcc
Q psy12291 127 NAIESLPANVFHDLISLEELDLSQNVLTSIQ--YGTFSGMYSLKRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRLSF 203 (404)
Q Consensus 127 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~--~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~ 203 (404)
|.+..+.+..|.++++|++|++++|.+.... ...+.++++|++|++++|.++.+.. ..|..+++|++|++++|.++.
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9999998888999999999999999998643 3348899999999999999988754 568999999999999998765
Q ss_pred cCCCccCC--------------------------CC------CCCEEECCCCcCCCCChhhh------------------
Q psy12291 204 IRPGLFNY--------------------------FK------HLTFLELSENWISSLNGDEF------------------ 233 (404)
Q Consensus 204 ~~~~~~~~--------------------------l~------~L~~L~l~~~~~~~~~~~~~------------------ 233 (404)
..+..+.. ++ .|+.|++++|.+....+..+
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 43332221 12 27777777775543222111
Q ss_pred ------------------cC--CCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecc
Q psy12291 234 ------------------SQ--LTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLN 293 (404)
Q Consensus 234 ------------------~~--l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 293 (404)
.+ .++|+.|++++|.+..+++..+..+++|+.|++++|.++.+.+..|.++++|++|+++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 11 2578899999998888887788899999999999999999988889999999999999
Q ss_pred cccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccc
Q psy12291 294 NNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWH 346 (404)
Q Consensus 294 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~ 346 (404)
+|+++.+.+..|..+++|+.|++++|.+..+++..+..+++|+.|++++|.+.
T Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp SCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 99999988888999999999999999999998888888999999999998864
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.2e-32 Score=263.20 Aligned_cols=301 Identities=23% Similarity=0.328 Sum_probs=225.2
Q ss_pred CCCceEEecCCCCCccCCCC-CCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeC
Q psy12291 22 PEIHTLSCWKQDMEELPFDQ-IIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDL 100 (404)
Q Consensus 22 ~~~~~~~~~~~~l~~ip~~~-~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 100 (404)
+..+.++..++.++.++... ....++++|++++|.+..+.+.+|.++++|++|++++|.+..+++..|..+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 34677888888888776542 23457888888888888887777888888888888888888777777777778888888
Q ss_pred CCCCCcccCccccCCCCCCcEEEccCCCCCcCC-CccCCCCCCCCEEECCCCccccccccc-------------------
Q psy12291 101 SQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP-ANVFHDLISLEELDLSQNVLTSIQYGT------------------- 160 (404)
Q Consensus 101 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~------------------- 160 (404)
++|.++.++...+.++++|++|++++|.++.+. +..|.++++|++|++++|.+..+.+..
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 877777776655777777777777777766543 344566666666666666443221100
Q ss_pred --------------------------------------------------------------------------------
Q psy12291 161 -------------------------------------------------------------------------------- 160 (404)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (404)
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence
Q ss_pred ----------c-----------------------------------------------------------------cCCc
Q psy12291 161 ----------F-----------------------------------------------------------------SGMY 165 (404)
Q Consensus 161 ----------l-----------------------------------------------------------------~~l~ 165 (404)
+ ..++
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCC
Confidence 0 1123
Q ss_pred cCcEEeccCCCCCC--------------------------CCCCccCCCCCCCeEecCCCcCcccCC-CccCCCCCCCEE
Q psy12291 166 SLKRLKLQSNRINQ--------------------------LPPGIFDDLKYLDFLSLRNNRLSFIRP-GLFNYFKHLTFL 218 (404)
Q Consensus 166 ~L~~L~l~~~~l~~--------------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L 218 (404)
+|++|++++|.++. +++. +..+++|++|++++|.+....+ ..+..+++|++|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 33444444443332 2222 4456667777777776665544 568889999999
Q ss_pred ECCCCcCCCCChhhhcCCCCCcEEECCCCCCc--ccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeeccccc
Q psy12291 219 ELSENWISSLNGDEFSQLTSLKELHLGQNYIE--TIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNL 296 (404)
Q Consensus 219 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 296 (404)
++++|.+....+..+..+++|++|++++|.+. .++ ..+..+++|+.|++++|.++++.+..|..+++|++|++++|+
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccch-hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 99999999888888999999999999999987 355 478899999999999999999988899999999999999999
Q ss_pred ccccCccccCCCCCCcEEeCCCCCCccc
Q psy12291 297 LRYLDTKAFEPMLHLKKLQLDSNKLQYL 324 (404)
Q Consensus 297 i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 324 (404)
++.+++..+..+++|+.|++++|.+..-
T Consensus 506 l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 506 LKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 9999988999999999999999998864
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.1e-31 Score=262.37 Aligned_cols=302 Identities=23% Similarity=0.283 Sum_probs=250.0
Q ss_pred CCCceEEecCCCCCccCCCCC-CCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeC
Q psy12291 22 PEIHTLSCWKQDMEELPFDQI-IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDL 100 (404)
Q Consensus 22 ~~~~~~~~~~~~l~~ip~~~~-~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 100 (404)
...+.++.+++.++.+|...+ ...+|++|++++|.|+.+.+++|.++++|++|+|++|+++.++...|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 357899999999999987543 3468999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCccccCCCCCCcEEEccCCCCCcCC-CccCCCCCCCCEEECCCCccccccccccc-----------------
Q psy12291 101 SQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP-ANVFHDLISLEELDLSQNVLTSIQYGTFS----------------- 162 (404)
Q Consensus 101 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~l~----------------- 162 (404)
++|.++.+++..|.++++|++|++++|.++.+. +..+..+++|++|++++|.+..+.+..+.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 999999999988999999999999999998764 45567789999999988765432211100
Q ss_pred --------------------------------------------------------------------------------
Q psy12291 163 -------------------------------------------------------------------------------- 162 (404)
Q Consensus 163 -------------------------------------------------------------------------------- 162 (404)
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence
Q ss_pred -----------------------------------------------------------------------------CCc
Q psy12291 163 -----------------------------------------------------------------------------GMY 165 (404)
Q Consensus 163 -----------------------------------------------------------------------------~l~ 165 (404)
.++
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 012
Q ss_pred cCcEEeccCCCCCC--------------------------------------------------CCCCccCCCCCCCeEe
Q psy12291 166 SLKRLKLQSNRINQ--------------------------------------------------LPPGIFDDLKYLDFLS 195 (404)
Q Consensus 166 ~L~~L~l~~~~l~~--------------------------------------------------~~~~~~~~l~~L~~L~ 195 (404)
+|+.|+++.|.+.. .+...|..+++++.++
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ 451 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence 23333333332210 0112234456677777
Q ss_pred cCCCcCcccCCCccCCCCCCCEEECCCCcCC-CCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCcc
Q psy12291 196 LRNNRLSFIRPGLFNYFKHLTFLELSENWIS-SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQ 274 (404)
Q Consensus 196 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~ 274 (404)
++.|.+....+..+..++.++.|++++|.+. ...+..|..+++|++|++++|++..+++..|..+++|+.|+|++|+|+
T Consensus 452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~ 531 (635)
T 4g8a_A 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531 (635)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence 7777788888888899999999999999743 455677899999999999999999999889999999999999999999
Q ss_pred ccccccccCCCCCCeeecccccccccCccccCCC-CCCcEEeCCCCCCcc
Q psy12291 275 ELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPM-LHLKKLQLDSNKLQY 323 (404)
Q Consensus 275 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~ 323 (404)
.+++.+|.++++|++|+|++|+++.+.+..+..+ ++|+.|+|++|.+..
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 9999999999999999999999999999999887 689999999999874
No 48
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=100.00 E-value=2.2e-31 Score=236.81 Aligned_cols=249 Identities=26% Similarity=0.354 Sum_probs=180.5
Q ss_pred cCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCC
Q psy12291 113 FKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLD 192 (404)
Q Consensus 113 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 192 (404)
++++++++.++++++.++.++.... ++++.|++++|.+..+.+..|.++++|++|++++|.++.++.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 5567777788888777777776542 4677777777777776666677777777777777766655432 3444455
Q ss_pred eEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCC
Q psy12291 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNN 272 (404)
Q Consensus 193 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~ 272 (404)
+|++ ++|.+..++ ..+..+++|++|++++|+++.+++..|..+++|+.|++++|.
T Consensus 81 ~L~L------------------------s~N~l~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 81 TLDL------------------------SHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp EEEC------------------------CSSCCSSCC-CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred EEEC------------------------CCCcCCcCc-hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 5544 444444443 245566777777777777777777677788888888888888
Q ss_pred ccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcH
Q psy12291 273 IQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAIL 352 (404)
Q Consensus 273 l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~ 352 (404)
++.++...|..+++|++|++++|+++.++...|..+++|+.|++++|+++.++.. +...++|+.+++++|||.|+|.+.
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~-~~~~~~L~~l~L~~Np~~C~c~~~ 214 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPWLCNCEIL 214 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCBCCSGGGH
T ss_pred CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh-hcccccCCeEEeCCCCccCcCccH
Confidence 8888777788888888899988888888888888889999999999999988765 445679999999999999999999
Q ss_pred HHHHHHHhccCccc--------------CCCCeeCCCCCCCCCcccCCCCcCCCCccc
Q psy12291 353 YMARWLRANRRKVW--------------DSKPTCRGPGNLGGKSVEDMSFDDLCEGQW 396 (404)
Q Consensus 353 ~~~~~~~~~~~~~~--------------~~~~~C~~p~~l~~~~l~~~~~~~~C~~~~ 396 (404)
|+.+|+++....++ ....+|.++. +.++..... ..|+...
T Consensus 215 ~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~---~~~v~~~~~-~~C~~~~ 268 (290)
T 1p9a_G 215 YFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSD---KFPVYKYPG-KGCPTLG 268 (290)
T ss_dssp HHHHHHHHTGGGBCCCCTTCCCSSCCCCGGGSBBTTCT---TCBGGGCCC-TTCCC--
T ss_pred HHHHHHHhCcccceeeccccccccccCCCCcCEeeCCC---CCceEecCc-CCCCCCC
Confidence 99999987654332 1146677654 556666543 3475543
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.3e-32 Score=263.93 Aligned_cols=292 Identities=20% Similarity=0.234 Sum_probs=213.9
Q ss_pred EEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCC
Q psy12291 50 IDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAI 129 (404)
Q Consensus 50 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 129 (404)
.+.+++.++.++.. +. ++|++|++++|+++++++..|..+++|++|++++|.++.+++..|.++++|++|++++|.+
T Consensus 10 c~~~~~~l~~ip~~-~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSG-LT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCSSCCSC-CC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcccccccc-CC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 67888889888754 32 7899999999999999888899999999999999999999988899999999999999999
Q ss_pred CcCCCccCCCCCCCCEEECCCCcccccc-cccccCCccCcEEeccCCC-CCCCCCCccCCCCCCCeEecCCCcCcccCCC
Q psy12291 130 ESLPANVFHDLISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQSNR-INQLPPGIFDDLKYLDFLSLRNNRLSFIRPG 207 (404)
Q Consensus 130 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 207 (404)
+.+++..|.++++|++|++++|.+..+. +..+.++++|++|++++|. +..+++..|..+++|++|++++|.++...+.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 9999888899999999999999998753 4578899999999999998 6778877889999999999999999876666
Q ss_pred ccCCC------------------------CCCCEEECCCCcCCCCCh---hhh---------------------------
Q psy12291 208 LFNYF------------------------KHLTFLELSENWISSLNG---DEF--------------------------- 233 (404)
Q Consensus 208 ~~~~l------------------------~~L~~L~l~~~~~~~~~~---~~~--------------------------- 233 (404)
.+..+ ++|++|++++|.+...+. ...
T Consensus 167 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence 66554 455555555555544210 000
Q ss_pred ------------------------------------------------------------cCCCCCcEEECCCCCCcccC
Q psy12291 234 ------------------------------------------------------------SQLTSLKELHLGQNYIETIP 253 (404)
Q Consensus 234 ------------------------------------------------------------~~l~~L~~L~l~~~~l~~~~ 253 (404)
...++|+.|++++|.+..+|
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip 326 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCC
T ss_pred hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCC
Confidence 00112333334444444344
Q ss_pred cccccCCCCCcEEECcCCCcccccc---ccccCCCCCCeeecccccccccCc--cccCCCCCCcEEeCCCCCCcccCccc
Q psy12291 254 AGSFANLQSLEKLFLYSNNIQELHA---GTFAGLTNLTALFLNNNLLRYLDT--KAFEPMLHLKKLQLDSNKLQYLATDS 328 (404)
Q Consensus 254 ~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~ 328 (404)
...+..+++|+.|++++|.+.+..+ ..++.+++|++|++++|+++.++. ..+..+++|++|++++|+++.++. .
T Consensus 327 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~ 405 (549)
T 2z81_A 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-S 405 (549)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS-C
T ss_pred HHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCCh-h
Confidence 3333456677777777777665321 235566777777777777766543 446666777777777777776654 3
Q ss_pred ccCCCCCcEEEccCCcc
Q psy12291 329 LSLLPNLITLKLAKNPW 345 (404)
Q Consensus 329 ~~~l~~L~~l~l~~Np~ 345 (404)
+..+++|+.|++++|.+
T Consensus 406 ~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 406 CQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp CCCCTTCCEEECTTSCC
T ss_pred hcccccccEEECCCCCc
Confidence 45566666666666654
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.97 E-value=1.1e-30 Score=253.89 Aligned_cols=283 Identities=23% Similarity=0.245 Sum_probs=191.9
Q ss_pred CcccCCCCCCCC---CCCCCceecC-CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEc
Q psy12291 1 WIKSDKEDSWYR---CCEGPCRCRP-EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKL 76 (404)
Q Consensus 1 ~~~~~~~~~w~~---~~~~~c~c~~-~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 76 (404)
|.....+..|.. .||..|.|.. ..+.++|.+++++.+|.. ++.++++|++++|.++.++. .+++|++|++
T Consensus 15 W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~~lp~~--l~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L 88 (622)
T 3g06_A 15 WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDC--LPAHITTLVIPDNNLTSLPA----LPPELRTLEV 88 (622)
T ss_dssp HHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCSCCCSC--CCTTCSEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred HHhcCCcchhccccccCcccccccCCCCcEEEecCCCcCccChh--hCCCCcEEEecCCCCCCCCC----cCCCCCEEEc
Confidence 444444455532 3445566654 378899999999999876 55789999999999887764 5688899999
Q ss_pred cCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCccccc
Q psy12291 77 RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI 156 (404)
Q Consensus 77 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~ 156 (404)
++|+++.++. .+++|++|++++|.++.++. .+++|+.|++++|.++.++.. +++|++|++++|.+..+
T Consensus 89 s~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 89 SGNQLTSLPV----LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASL 156 (622)
T ss_dssp CSCCCSCCCC----CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCC----CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCc
Confidence 9998888876 56888899999988888876 467888888888888887653 36788888888877765
Q ss_pred ccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCC
Q psy12291 157 QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQL 236 (404)
Q Consensus 157 ~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 236 (404)
+. ...+|+.|++++|.++.++ ..+++|+.|++++|.++.++. .+++|+.|++++|.+..++. .+
T Consensus 157 ~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~----~~ 220 (622)
T 3g06_A 157 PA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA----LP 220 (622)
T ss_dssp CC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC----CC
T ss_pred CC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC----CC
Confidence 42 2457778888888777766 234677777777777765432 23566666666666665542 23
Q ss_pred CCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeC
Q psy12291 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQL 316 (404)
Q Consensus 237 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 316 (404)
++|+.|++++|.++.++ ..+++|+.|++++|.++.++. .+++|++|++++|+++.++ ..+..+++|+.|+|
T Consensus 221 ~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp-~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCC-GGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCC-HHHhhccccCEEEe
Confidence 55666666666666555 234566666666666665543 3455666666666666553 33555566666666
Q ss_pred CCCCCcccCc
Q psy12291 317 DSNKLQYLAT 326 (404)
Q Consensus 317 ~~n~l~~~~~ 326 (404)
++|.+++..+
T Consensus 292 ~~N~l~~~~~ 301 (622)
T 3g06_A 292 EGNPLSERTL 301 (622)
T ss_dssp CSCCCCHHHH
T ss_pred cCCCCCCcCH
Confidence 6666655443
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.8e-29 Score=238.55 Aligned_cols=274 Identities=23% Similarity=0.240 Sum_probs=228.5
Q ss_pred CCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEc
Q psy12291 45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL 124 (404)
Q Consensus 45 ~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 124 (404)
..+++|++++|.+++++ .+..+++|++|++++|++++++ +..+++|++|++++|.++.++ +..+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCcCCEEEC
Confidence 57999999999999874 6899999999999999999985 688999999999999999885 789999999999
Q ss_pred cCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCC-CCCCCCCccCCCCCCCeEecCCCcCcc
Q psy12291 125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNR-INQLPPGIFDDLKYLDFLSLRNNRLSF 203 (404)
Q Consensus 125 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~~~ 203 (404)
++|.++.++ +..+++|+.|++++|.+..+. +..+++|++|++++|. +..+ .+..+++|++|++++|.++.
T Consensus 114 ~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 114 DTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccce
Confidence 999999875 678999999999999998863 7788999999999994 4444 26788999999999999998
Q ss_pred cCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccC
Q psy12291 204 IRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAG 283 (404)
Q Consensus 204 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 283 (404)
++ +..+++|+.|++++|.+..++ +..+++|+.|++++|.+..++ +..+++|+.|++++|.++.++.. .
T Consensus 185 l~---l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~---~ 252 (457)
T 3bz5_A 185 LD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVS---T 252 (457)
T ss_dssp CC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCT---T
T ss_pred ec---cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHH---H
Confidence 64 788999999999999999873 788999999999999999986 67889999999999999998754 4
Q ss_pred CCCCCeeecccccccccCc--------cccCCCCCCcEEeCCCCCCcc-cCc-------ccccCCCCCcEEEccCCcccc
Q psy12291 284 LTNLTALFLNNNLLRYLDT--------KAFEPMLHLKKLQLDSNKLQY-LAT-------DSLSLLPNLITLKLAKNPWHC 347 (404)
Q Consensus 284 ~~~L~~L~l~~n~i~~~~~--------~~~~~l~~L~~L~l~~n~l~~-~~~-------~~~~~l~~L~~l~l~~Np~~C 347 (404)
+++|+.|++++|+++.+.. -.+..+++|+.|++++|...+ ++. -.+..+++|+.|++++|.+..
T Consensus 253 l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 253 LSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred CCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence 4555555555554443321 124567999999999996433 211 125667899999999998754
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=9e-32 Score=242.30 Aligned_cols=253 Identities=18% Similarity=0.195 Sum_probs=175.7
Q ss_pred CCCCEEEccCCcCcc--cCcccccCCCCCCEEeCCC-CCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCE
Q psy12291 69 YKLTELKLRKNHLSE--LPGKLFISTINLSTMDLSQ-NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEE 145 (404)
Q Consensus 69 ~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 145 (404)
.+++.|+++++.+.+ ..+..|..+++|++|++++ |.+....+..|..+++|++|++++|.++...+..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 468899999998885 3344578888899999985 7776444444778888888888888887554555677778888
Q ss_pred EECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCC-CCCeEecCCCcCcccCCCccCCCCCCCEEECCCCc
Q psy12291 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLK-YLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENW 224 (404)
Q Consensus 146 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 224 (404)
|++++|.+....+..+..+++|++|++++|.+++..+..+..++ +|++|++++|.++..
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-------------------- 189 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-------------------- 189 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE--------------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc--------------------
Confidence 88888777765556666677777777777766633333344444 555555555554433
Q ss_pred CCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccc
Q psy12291 225 ISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKA 304 (404)
Q Consensus 225 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 304 (404)
.+..+..+. |+.|++++|.+....+..+..+++|+.|++++|.++...+. +..+++|++|++++|+++...+..
T Consensus 190 ----~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 190 ----IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp ----CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred ----CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence 334444444 66666666666655555666677777777777777655443 566778888888888887666677
Q ss_pred cCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccc
Q psy12291 305 FEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCD 348 (404)
Q Consensus 305 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~ 348 (404)
+..+++|++|++++|++++..+.. ..+++|+.+++.+||+.|+
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 777888888888888887654443 6788888999999998886
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=5.8e-29 Score=234.85 Aligned_cols=288 Identities=26% Similarity=0.343 Sum_probs=173.1
Q ss_pred CCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCC
Q psy12291 22 PEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLS 101 (404)
Q Consensus 22 ~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 101 (404)
+..+.++..++.++.+|. .+.++++|++++|.+..+... .++|++|++++|++++++ .|..+++|++|+++
T Consensus 91 ~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVD 161 (454)
T ss_dssp TTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECC
T ss_pred CCCCEEEccCCcCCcccc---ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc--ccCCCCCCCEEECC
Confidence 346667777777777664 235677777777776654321 157888888888888877 27788888888888
Q ss_pred CCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCC
Q psy12291 102 QNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181 (404)
Q Consensus 102 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 181 (404)
+|.++.+|.. ..+|++|++++|.++.++. +.++++|+.|++++|.+..++.. .++|++|++++|.+..++
T Consensus 162 ~N~l~~lp~~----~~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp 231 (454)
T 1jl5_A 162 NNSLKKLPDL----PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELP 231 (454)
T ss_dssp SSCCSCCCCC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCC
T ss_pred CCcCcccCCC----cccccEEECcCCcCCcCcc--ccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCccc
Confidence 8888877653 3478888888888887763 67788888888888877765421 247788888888777666
Q ss_pred CCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCccc-----
Q psy12291 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS----- 256 (404)
Q Consensus 182 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~----- 256 (404)
. +..+++|++|++++|+++.++. ..++|++|++++|.+..++. .+++|++|++++|.+..++...
T Consensus 232 ~--~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l~~l~~~~~~L~~ 301 (454)
T 1jl5_A 232 E--LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSGLSELPPNLYY 301 (454)
T ss_dssp C--CTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSEESCCCTTCCE
T ss_pred c--cCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCc----ccCcCCEEECcCCccCcccCcCCcCCE
Confidence 3 6777778888888777766532 23667777777777766542 1256666666666665543210
Q ss_pred ----------ccCC-CCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccC
Q psy12291 257 ----------FANL-QSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLA 325 (404)
Q Consensus 257 ----------~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 325 (404)
+..+ ++|+.|++++|.++.++. .+++|++|++++|+++.++. .+++|++|++++|++++++
T Consensus 302 L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~ 373 (454)
T 1jl5_A 302 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFP 373 (454)
T ss_dssp EECCSSCCSEECCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC
T ss_pred EECcCCcCCcccCCcCcCCEEECCCCccccccc----cCCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCC
Confidence 0011 355555555555555432 13556666666666655543 2456666666666665522
Q ss_pred --cccccCC-------------CCCcEEEccCCccc
Q psy12291 326 --TDSLSLL-------------PNLITLKLAKNPWH 346 (404)
Q Consensus 326 --~~~~~~l-------------~~L~~l~l~~Np~~ 346 (404)
+..+..+ ++|+.|++++|++.
T Consensus 374 ~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 374 DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp CCCTTCCEEECCC-----------------------
T ss_pred CChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 2233333 55666666666654
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.1e-30 Score=235.28 Aligned_cols=262 Identities=18% Similarity=0.182 Sum_probs=200.3
Q ss_pred CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcc--cChhhcCCCCCCCEEEccC-CcCcccCcccccCCCCCCEEe
Q psy12291 23 EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLST--LSKDAFTGLYKLTELKLRK-NHLSELPGKLFISTINLSTMD 99 (404)
Q Consensus 23 ~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~ 99 (404)
.+..|.|.... ....+++|+++++.+.+ ..+..|.++++|++|++++ |.+.+..+..|..+++|++|+
T Consensus 37 ~w~gv~C~~~~---------~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~ 107 (313)
T 1ogq_A 37 TWLGVLCDTDT---------QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107 (313)
T ss_dssp CSTTEEECCSS---------SCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEE
T ss_pred CCcceEeCCCC---------CCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEE
Confidence 47889996421 23479999999999987 5667899999999999995 888865566689999999999
Q ss_pred CCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCc-cCcEEeccCCCCC
Q psy12291 100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMY-SLKRLKLQSNRIN 178 (404)
Q Consensus 100 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~-~L~~L~l~~~~l~ 178 (404)
+++|.++...+..|..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..++ +|++|++++|.++
T Consensus 108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 999999855555688999999999999999966666678899999999999999877778888887 9999999999998
Q ss_pred CCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCccccc
Q psy12291 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA 258 (404)
Q Consensus 179 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 258 (404)
+..+..+..++ |++|++++|.++...+..+..+++|+.|++++|.+....+. +..+++|++|++++|.+....+..+.
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHh
Confidence 76666677776 88899988888877777777777777777777777655433 55566666666666666643333555
Q ss_pred CCCCCcEEECcCCCccccccccccCCCCCCeeeccccc
Q psy12291 259 NLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNL 296 (404)
Q Consensus 259 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 296 (404)
.+++|+.|++++|.+++..+.. ..+++|+++++++|.
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 6666666666666665433322 445555666665554
No 55
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.97 E-value=2.4e-29 Score=221.75 Aligned_cols=211 Identities=35% Similarity=0.581 Sum_probs=180.8
Q ss_pred CCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCC
Q psy12291 15 EGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTIN 94 (404)
Q Consensus 15 ~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 94 (404)
+..|.|.+..+.++|.+++++.+|.. ++.++++|++++|.+..+.+.+|.++++|++|++++|.++.++...|..+++
T Consensus 9 ~~~C~c~~~~~~l~~~~~~l~~ip~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~ 86 (270)
T 2o6q_A 9 GGVCSCNNNKNSVDCSSKKLTAIPSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86 (270)
T ss_dssp TCSBEEETTTTEEECTTSCCSSCCSC--CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTT
T ss_pred CCCCEeCCCCCEEEccCCCCCccCCC--CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCC
Confidence 46799998899999999999999976 6788999999999999998888999999999999999999999988899999
Q ss_pred CCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccC
Q psy12291 95 LSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQS 174 (404)
Q Consensus 95 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~ 174 (404)
|++|++++|.++.+++..|..+++|++|++++|.++.++...|..+++|+.|++++|.+..+....|..+++|++|++++
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence 99999999999999888888899999999999999988888888888888888888888888777778888888888888
Q ss_pred CCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCC
Q psy12291 175 NRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227 (404)
Q Consensus 175 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 227 (404)
|.++.+++..|..+++|++|++++|.++.+++..+..+++|+.|++++|.+..
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 88888877777777778888877777777666666666677777777666543
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=3.1e-28 Score=229.87 Aligned_cols=284 Identities=24% Similarity=0.286 Sum_probs=233.8
Q ss_pred CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCC
Q psy12291 23 EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ 102 (404)
Q Consensus 23 ~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 102 (404)
..+.+++.+++++.+|. .+.++++|++++|.+++++. .+++|++|++++|++.+++.. .++|++|++++
T Consensus 72 ~l~~L~l~~~~l~~lp~---~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~ 140 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPE---LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSN 140 (454)
T ss_dssp TCSEEECTTSCCSCCCS---CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCS
T ss_pred CCCEEEecCCccccCCC---CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcC
Confidence 36889999999999987 56799999999999998753 247999999999999987642 37899999999
Q ss_pred CCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCC
Q psy12291 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPP 182 (404)
Q Consensus 103 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~ 182 (404)
|.++.+|. |.++++|++|++++|.++.++.. ..+|++|++++|.+..++ .+.++++|++|++++|.+++++.
T Consensus 141 n~l~~lp~--~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~ 212 (454)
T 1jl5_A 141 NQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPD 212 (454)
T ss_dssp SCCSSCCC--CTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCC
T ss_pred CCCCCCcc--cCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCC
Confidence 99999883 89999999999999999987753 359999999999999875 58899999999999999998775
Q ss_pred CccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCC
Q psy12291 183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQS 262 (404)
Q Consensus 183 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~ 262 (404)
. .++|++|++++|.++.++ .+..+++|++|++++|.+..++. .+++|+.|++++|.+..++.. +++
T Consensus 213 ~----~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~~----~~~ 278 (454)
T 1jl5_A 213 L----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPEL----PQS 278 (454)
T ss_dssp C----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCCC----CTT
T ss_pred C----cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCcc----cCc
Confidence 3 268999999999998665 38899999999999999988763 347999999999999987752 367
Q ss_pred CcEEECcCCCccccccc---------------cccCC-CCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCc
Q psy12291 263 LEKLFLYSNNIQELHAG---------------TFAGL-TNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT 326 (404)
Q Consensus 263 L~~L~L~~n~l~~~~~~---------------~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 326 (404)
|+.|++++|.++.++.. .+..+ ++|++|++++|+++.++.. +++|+.|++++|+++.++.
T Consensus 279 L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~L~~N~l~~lp~ 354 (454)
T 1jl5_A 279 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPE 354 (454)
T ss_dssp CCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC
T ss_pred CCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc----CCcCCEEECCCCccccccc
Confidence 88888888877764321 01122 4777777777777765432 4788999999999888766
Q ss_pred ccccCCCCCcEEEccCCcccc
Q psy12291 327 DSLSLLPNLITLKLAKNPWHC 347 (404)
Q Consensus 327 ~~~~~l~~L~~l~l~~Np~~C 347 (404)
.+++|+.|++++|++..
T Consensus 355 ----~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 355 ----LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp ----CCTTCCEEECCSSCCSS
T ss_pred ----hhhhccEEECCCCCCCc
Confidence 46889999999999866
No 57
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.97 E-value=3.7e-30 Score=222.83 Aligned_cols=225 Identities=21% Similarity=0.395 Sum_probs=179.1
Q ss_pred CCCCCCceecC-CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCc-CcccCcccc
Q psy12291 12 RCCEGPCRCRP-EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNH-LSELPGKLF 89 (404)
Q Consensus 12 ~~~~~~c~c~~-~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~ 89 (404)
.|||..|.|.. ....++|.+ ++.+|. .+.++++|++++|+++.+.+..|.++++|++|++++|. ++.++...|
T Consensus 2 ~~cp~~C~C~~~~~~~v~c~~--l~~ip~---~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f 76 (239)
T 2xwt_C 2 GCSSPPCECHQEEDFRVTCKD--IQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF 76 (239)
T ss_dssp -CCSSSCSEEECSTTEEEECS--CSSCCC---CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTE
T ss_pred CCCCCCCeeCCCCcceeEccC--ccccCC---CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHc
Confidence 57899999988 777889987 999997 67799999999999999998889999999999999997 999998889
Q ss_pred cCCCCCCEEeCCC-CCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCC---EEECCCC-cccccccccccCC
Q psy12291 90 ISTINLSTMDLSQ-NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE---ELDLSQN-VLTSIQYGTFSGM 164 (404)
Q Consensus 90 ~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~l~~~-~l~~~~~~~l~~l 164 (404)
..+++|++|++++ |.++.+++..|.++++|++|++++|.++.++. |..+++|+ .|++++| .+..+.+..|.++
T Consensus 77 ~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l 154 (239)
T 2xwt_C 77 YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154 (239)
T ss_dssp ESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT
T ss_pred CCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccch
Confidence 9999999999998 99999998889999999999999999988876 67777777 8888888 7887777777778
Q ss_pred ccCc-EEeccCCCCCCCCCCccCCCCCCCeEecCCCc-CcccCCCccCCC-CCCCEEECCCCcCCCCChhhhcCCCCCcE
Q psy12291 165 YSLK-RLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR-LSFIRPGLFNYF-KHLTFLELSENWISSLNGDEFSQLTSLKE 241 (404)
Q Consensus 165 ~~L~-~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 241 (404)
++|+ .|++++|.++.++...|.. ++|+.|++++|+ ++.+++..|..+ ++|+.|++++|.+..++.. .+++|+.
T Consensus 155 ~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~ 230 (239)
T 2xwt_C 155 CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKE 230 (239)
T ss_dssp BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSE
T ss_pred hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCce
Confidence 8888 8888888877777666655 667777777773 666655556555 5666666666655555432 3345555
Q ss_pred EECCCC
Q psy12291 242 LHLGQN 247 (404)
Q Consensus 242 L~l~~~ 247 (404)
|+++++
T Consensus 231 L~l~~~ 236 (239)
T 2xwt_C 231 LIARNT 236 (239)
T ss_dssp EECTTC
T ss_pred eeccCc
Confidence 555443
No 58
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.97 E-value=6.4e-30 Score=217.98 Aligned_cols=201 Identities=31% Similarity=0.503 Sum_probs=160.8
Q ss_pred CeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCC
Q psy12291 192 DFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271 (404)
Q Consensus 192 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n 271 (404)
+.++++++.++.++... .++++.|++++|.+..+++..|..+++|+.|++++|.+..+.+..|..+++|+.|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34455555555443321 145666677777666666666777778888888888888776667888888888888888
Q ss_pred CccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCc
Q psy12291 272 NIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAI 351 (404)
Q Consensus 272 ~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~ 351 (404)
.++.++...|.++++|++|+|++|+++.+.+..|..+++|+.|+|++|+++.+++..+..+++|+.|++++|||.|||.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 88888888888889999999999999998888899999999999999999999988899999999999999999999999
Q ss_pred HHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCCCCcCCCCcccc
Q psy12291 352 LYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDLCEGQWA 397 (404)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~~~~~~C~~~~~ 397 (404)
.|+..|+...... ....+|++|+.++|+.+.+++.+++...+.+
T Consensus 171 ~~l~~~l~~~~~~--~~~~~C~~P~~l~g~~l~~l~~~~~~c~~~~ 214 (220)
T 2v9t_B 171 KWLADYLHTNPIE--TSGARCTSPRRLANKRIGQIKSKKFRCSAAA 214 (220)
T ss_dssp HHHHHHHHHCCCB--CSCCBEEESGGGTTCBGGGSCGGGCCC----
T ss_pred HHHHHHHHhCCCC--ccCCCcCCchHHcCCchhhCCHHHCcCcccc
Confidence 9999999876533 3478999999999999999999998443333
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.97 E-value=3.2e-28 Score=236.68 Aligned_cols=258 Identities=27% Similarity=0.279 Sum_probs=225.8
Q ss_pred CeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEcc
Q psy12291 46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLS 125 (404)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 125 (404)
+++.|+++++.++.++.. +. ++|+.|++++|.++.++. .+++|++|++++|.++.+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~-l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDC-LP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSC-CC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChh-hC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECc
Confidence 589999999999988643 33 799999999999999887 47899999999999999887 67899999999
Q ss_pred CCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccC
Q psy12291 126 YNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR 205 (404)
Q Consensus 126 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 205 (404)
+|.++.++. .+++|+.|++++|.+..++. .+++|++|++++|.++.++. .+++|+.|++++|.++.++
T Consensus 110 ~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 110 SNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp SCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC
T ss_pred CCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc
Confidence 999999877 46799999999999988764 24799999999999998874 3478999999999999875
Q ss_pred CCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCC
Q psy12291 206 PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLT 285 (404)
Q Consensus 206 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 285 (404)
..+++|+.|++++|.+..++. .+++|+.|++++|.+..++. .+++|+.|++++|.++.++ ..++
T Consensus 178 ----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp----~~l~ 241 (622)
T 3g06_A 178 ----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP----VLPS 241 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC----CCCT
T ss_pred ----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC----CCCC
Confidence 457899999999999998763 34799999999999998875 2489999999999999986 4568
Q ss_pred CCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCcccc
Q psy12291 286 NLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHC 347 (404)
Q Consensus 286 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C 347 (404)
+|++|++++|+++.++. .+++|+.|+|++|+++.++. .+..+++|+.|++++|++..
T Consensus 242 ~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~-~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 242 ELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCG-GGGGSCTTCEEECCSCCCCH
T ss_pred cCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCH-HHhhccccCEEEecCCCCCC
Confidence 99999999999998876 56899999999999998865 58899999999999999964
No 60
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.97 E-value=1.4e-28 Score=214.36 Aligned_cols=211 Identities=32% Similarity=0.552 Sum_probs=182.1
Q ss_pred cCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECC
Q psy12291 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLG 245 (404)
Q Consensus 166 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 245 (404)
..++++++++.++.+|.... ++++.|++++|.++.+.+..+..+++|++|++++|.+..+++..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45678888888888776532 578888888888888877778888889999999998888887788889999999999
Q ss_pred CCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccC
Q psy12291 246 QNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLA 325 (404)
Q Consensus 246 ~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 325 (404)
+|.+..++...+..+++|+.|++++|.++.++...|..+++|++|++++|+++.+++..|..+++|++|+|++|+++.++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 99999988878889999999999999999998888899999999999999999998888999999999999999999999
Q ss_pred cccccCCCCCcEEEccCCccccc-cCcHHHHHHHHhccCcccC----------CCCeeCCCCCCC
Q psy12291 326 TDSLSLLPNLITLKLAKNPWHCD-CAILYMARWLRANRRKVWD----------SKPTCRGPGNLG 379 (404)
Q Consensus 326 ~~~~~~l~~L~~l~l~~Np~~C~-c~~~~~~~~~~~~~~~~~~----------~~~~C~~p~~l~ 379 (404)
+..+..+++|+.|++++|+|.|+ |.+.|+..|+......+.+ ....|+.+..++
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 236 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDGKVVR 236 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTSCBGG
T ss_pred HHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCCcEEe
Confidence 98899999999999999999999 9999999999877554422 246677654443
No 61
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.96 E-value=4.7e-29 Score=212.61 Aligned_cols=202 Identities=25% Similarity=0.488 Sum_probs=163.1
Q ss_pred eEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCC-hhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCC
Q psy12291 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN-GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271 (404)
Q Consensus 193 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n 271 (404)
.++++++.++.++... .+.+++|++++|.+..++ ...|..+++|++|++++|.+..+++..|..+++|+.|+|++|
T Consensus 15 ~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4555555554443211 234566666666666653 245678888888888888888888778888999999999999
Q ss_pred CccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCc
Q psy12291 272 NIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAI 351 (404)
Q Consensus 272 ~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~ 351 (404)
.++.+++..|.++++|++|+|++|+++.+.+..|..+++|+.|+|++|+++++++..+..+++|+.|++++|||.|+|.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 99999888899999999999999999999888999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCCCCcCC-CCcccccc
Q psy12291 352 LYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL-CEGQWASM 399 (404)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~~~~~~-C~~~~~~~ 399 (404)
.|+..|+..... ......|+.|..++|+++.+++...+ |..+.+.+
T Consensus 172 ~~l~~~~~~~~~--~~~~~~C~~P~~l~g~~l~~l~~~~~~~~~~~~~~ 218 (220)
T 2v70_A 172 AWLGEWLRKKRI--VTGNPRCQKPYFLKEIPIQDVAIQDFTCDDAHHHH 218 (220)
T ss_dssp HHHHHHHHHSCC--BCCCCEEEESGGGTTEEGGGSCGGGCCCCC-----
T ss_pred HHHHHHHHhcCc--cccCCccCCChHHCCCChhhCCHHHcccccccccC
Confidence 999999987543 23578999999999999999998886 66555443
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=7.4e-30 Score=230.38 Aligned_cols=248 Identities=23% Similarity=0.279 Sum_probs=166.6
Q ss_pred CCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECC
Q psy12291 70 KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS 149 (404)
Q Consensus 70 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 149 (404)
.++..+++.+.+...+...+..+++|++|++++|.++.+++..|..+++|++|++++|.++.+++ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34555666666666655666666677777777777777766667777777777777777665544 5566677777777
Q ss_pred CCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCC
Q psy12291 150 QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229 (404)
Q Consensus 150 ~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 229 (404)
+|.+..+.. .++|++|++++|.++.++.. .+++|++|++++|.+..+.
T Consensus 89 ~n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~---------------------------~~~~L~~L~l~~N~l~~~~ 136 (317)
T 3o53_A 89 NNYVQELLV-----GPSIETLHAANNNISRVSCS---------------------------RGQGKKNIYLANNKITMLR 136 (317)
T ss_dssp SSEEEEEEE-----CTTCCEEECCSSCCSEEEEC---------------------------CCSSCEEEECCSSCCCSGG
T ss_pred CCccccccC-----CCCcCEEECCCCccCCcCcc---------------------------ccCCCCEEECCCCCCCCcc
Confidence 666654431 24555555555555444322 1344556666666665555
Q ss_pred hhhhcCCCCCcEEECCCCCCcccCcccc-cCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCC
Q psy12291 230 GDEFSQLTSLKELHLGQNYIETIPAGSF-ANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPM 308 (404)
Q Consensus 230 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l 308 (404)
+..+..+++|++|++++|.+..++...+ ..+++|+.|++++|.++.++.. ..+++|++|++++|+++.+++. +..+
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~-~~~l 213 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE-FQSA 213 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGG-GGGG
T ss_pred chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCCcchhh-hccc
Confidence 5556666677777777777766554333 3567777777777777776432 3478888888888888877655 6777
Q ss_pred CCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHHHH
Q psy12291 309 LHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMA 355 (404)
Q Consensus 309 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~~ 355 (404)
++|+.|++++|+++.++. .+..+++|+.|++++|++.|+|...++.
T Consensus 214 ~~L~~L~L~~N~l~~l~~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 214 AGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp TTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred CcccEEECcCCcccchhh-HhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 888899999998888765 4778889999999999999886554444
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=2.6e-30 Score=233.41 Aligned_cols=258 Identities=19% Similarity=0.207 Sum_probs=181.0
Q ss_pred CeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEcc
Q psy12291 46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLS 125 (404)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 125 (404)
.++..+++.+.+.......+..+++|++|++++|++..+++..|..+++|++|++++|.++.+++ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 46777888888887777777888899999999999999998889999999999999999988776 8899999999999
Q ss_pred CCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccC
Q psy12291 126 YNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR 205 (404)
Q Consensus 126 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 205 (404)
+|.++.++. .++|+.|++++|.+..+.... +++|++|++++|.++.+++..+..+++|++|++++|.++.+.
T Consensus 89 ~n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQELLV-----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEEEE-----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccccC-----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 999987663 379999999999998876544 568999999999999887766777777888888777776654
Q ss_pred CCcc-CCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCC
Q psy12291 206 PGLF-NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGL 284 (404)
Q Consensus 206 ~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 284 (404)
+..+ ..+++|++|++++|.+.. ++. ...+++|+.|++++|.++.+++. +..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l 213 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYD------------------------VKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSA 213 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCE------------------------EEC--CCCCTTCCEEECCSSCCCEECGG-GGGG
T ss_pred HHHHhhccCcCCEEECCCCcCcc------------------------ccc--ccccccCCEEECCCCcCCcchhh-hccc
Confidence 4433 234555555555555444 432 11244555555555555554433 4445
Q ss_pred CCCCeeecccccccccCccccCCCCCCcEEeCCCCCCc-ccCcccccCCCCCcEEEcc
Q psy12291 285 TNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQ-YLATDSLSLLPNLITLKLA 341 (404)
Q Consensus 285 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~l~l~ 341 (404)
++|++|++++|+++.++. .+..+++|+.|++++|++. ...+..+..+++|+.+++.
T Consensus 214 ~~L~~L~L~~N~l~~l~~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 214 AGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CcccEEECcCCcccchhh-HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 555555555555555432 3445555555555555555 3333444455555555544
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.7e-29 Score=228.79 Aligned_cols=257 Identities=20% Similarity=0.264 Sum_probs=199.5
Q ss_pred CCceEEecCCCCCccCCC-CCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCC
Q psy12291 23 EIHTLSCWKQDMEELPFD-QIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLS 101 (404)
Q Consensus 23 ~~~~~~~~~~~l~~ip~~-~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 101 (404)
..+.++..++.++.+|.. .....++++|++++|.++.+.+.+|.++++|++|++++|+++.++...|..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 567899999999999874 3345689999999999999988899999999999999999999999888999999999999
Q ss_pred CCCCcccCc-cccCCCCCCcEEEccCC-CCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCC
Q psy12291 102 QNLIKTLPS-TFFKGAIRLTVVQLSYN-AIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179 (404)
Q Consensus 102 ~n~l~~~~~-~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~ 179 (404)
+|.++.++. ..|..+++|++|++++| .+..++...|.++++|+.|++++|.+....+..+..+++|++|++++|.++.
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 999999988 67999999999999999 5888888888999999999999999999988899999999999999999988
Q ss_pred CCCCccCCCCCCCeEecCCCcCcccCCCccC---CCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCccc
Q psy12291 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFN---YFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS 256 (404)
Q Consensus 180 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 256 (404)
++...+..+++|+.|++++|.++......+. ....++.+++..+.+.. +.+..++. .
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~-------------------~~l~~l~~-~ 272 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD-------------------ESLFQVMK-L 272 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH-------------------HHHHHHHH-H
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC-------------------cchhhhHH-H
Confidence 7766666688999999999988765443222 22334444444433322 11112222 3
Q ss_pred ccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccc
Q psy12291 257 FANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRY 299 (404)
Q Consensus 257 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~ 299 (404)
+..+++|+.|++++|.++.++...|..+++|++|++++|.+..
T Consensus 273 l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 4455566666666666665555555556666666666665543
No 65
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.96 E-value=6.5e-28 Score=220.65 Aligned_cols=248 Identities=22% Similarity=0.332 Sum_probs=194.2
Q ss_pred CC-CCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCc-ccCcccccC
Q psy12291 14 CE-GPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFIS 91 (404)
Q Consensus 14 ~~-~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~ 91 (404)
|| +.|+|.. +.++|.++++++||.+ +|.++++|++++|+|+.+++++|.++++|++|+|++|++. .++..+|.+
T Consensus 2 Cp~~~C~C~~--~~v~C~~~~Lt~iP~~--l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~ 77 (350)
T 4ay9_X 2 CHHRICHCSN--RVFLCQESKVTEIPSD--LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN 77 (350)
T ss_dssp CCCSSSEEET--TEEEEESTTCCSCCTT--CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS
T ss_pred CCCCccEeeC--CEEEecCCCCCccCcC--cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc
Confidence 45 4599974 6899999999999986 6889999999999999999999999999999999999974 688888999
Q ss_pred CCCCCE-EeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCC-CcccccccccccCCc-cCc
Q psy12291 92 TINLST-MDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQ-NVLTSIQYGTFSGMY-SLK 168 (404)
Q Consensus 92 ~~~L~~-L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~l~~l~-~L~ 168 (404)
++++++ +.++.|+++.+++..|..+++|++|++++|.++.++...+....++..|++.+ +.+..+....|..+. .++
T Consensus 78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~ 157 (350)
T 4ay9_X 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 157 (350)
T ss_dssp CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred chhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhh
Confidence 988876 56667899999988899999999999999999998887776777788888855 577777777777664 588
Q ss_pred EEeccCCCCCCCCCCccCCCCCCCeEecC-CCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCC
Q psy12291 169 RLKLQSNRINQLPPGIFDDLKYLDFLSLR-NNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQN 247 (404)
Q Consensus 169 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 247 (404)
.|++++|.++.+++..|. ..+|+.+.+. +|.++.+++..|..+++|++|++++|.++.++...+. +|+.|.+.++
T Consensus 158 ~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~ 233 (350)
T 4ay9_X 158 ILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARST 233 (350)
T ss_dssp EEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTC
T ss_pred hhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccC
Confidence 889999888888877764 3568888876 4667777777777777777777777777777654443 4444444333
Q ss_pred -CCcccCcccccCCCCCcEEECcCC
Q psy12291 248 -YIETIPAGSFANLQSLEKLFLYSN 271 (404)
Q Consensus 248 -~l~~~~~~~~~~l~~L~~L~L~~n 271 (404)
.+..+|. +..+++|+.+++.++
T Consensus 234 ~~l~~lP~--l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 234 YNLKKLPT--LEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCCCCC--TTTCCSCCEEECSCH
T ss_pred CCcCcCCC--chhCcChhhCcCCCC
Confidence 4455553 556666777666543
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=7.6e-29 Score=236.30 Aligned_cols=234 Identities=22% Similarity=0.260 Sum_probs=113.7
Q ss_pred CCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEecc
Q psy12291 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQ 173 (404)
Q Consensus 94 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 173 (404)
+|++|++++|.++.+++..|..+++|++|++++|.++.+++ +..+++|+.|++++|.+..+++ .++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 45555555555555544445555555555555555544333 4455555555555555544332 1455555555
Q ss_pred CCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhc-CCCCCcEEECCCCCCccc
Q psy12291 174 SNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFS-QLTSLKELHLGQNYIETI 252 (404)
Q Consensus 174 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~~ 252 (404)
+|.++.+++. .+++|+.|++++|.++...+..+..+++|++|++++|.+....+..+. .+++|+.|++++|.+..+
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 5555554432 234455555555555554444444455555555555555544433333 455555555555555554
Q ss_pred CcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCc-ccCcccccC
Q psy12291 253 PAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQ-YLATDSLSL 331 (404)
Q Consensus 253 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~ 331 (404)
+. ...+++|+.|+|++|.++.+++. +..+++|+.|++++|+++.++. .+..+++|+.|++++|.+. +..+..+..
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred cc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccch-hhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 33 22345555555555555554443 4444555555555555544422 2344444455555544444 122223334
Q ss_pred CCCCcEEEcc
Q psy12291 332 LPNLITLKLA 341 (404)
Q Consensus 332 l~~L~~l~l~ 341 (404)
++.++.+++.
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 4444444443
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.4e-29 Score=228.08 Aligned_cols=250 Identities=18% Similarity=0.151 Sum_probs=151.3
Q ss_pred hcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcc--cCcccc------CCCCCCcEEEccCCCCCc-CCC
Q psy12291 64 AFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT--LPSTFF------KGAIRLTVVQLSYNAIES-LPA 134 (404)
Q Consensus 64 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~------~~~~~L~~L~l~~n~l~~-~~~ 134 (404)
.+.+.++|+.|++++|.+ .+|...... |++|++++|.++. ++.... .++++|++|++++|.++. ++.
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 356667888888998888 777654322 8888888888754 333211 157888899998888874 444
Q ss_pred ccC-CCCCCCCEEECCCCcccccccccccCC-----ccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCccc---C
Q psy12291 135 NVF-HDLISLEELDLSQNVLTSIQYGTFSGM-----YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI---R 205 (404)
Q Consensus 135 ~~~-~~l~~L~~L~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~---~ 205 (404)
..| ..+++|++|++++|.+... +..+..+ ++|++|++++|.++.+++..|..+++|++|++++|++.+. +
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 332 7788888888888888877 4555555 7888888888888887777777777888888877775432 1
Q ss_pred -CCccCCCCCCCEEECCCCcCCCCC---hhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccc
Q psy12291 206 -PGLFNYFKHLTFLELSENWISSLN---GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTF 281 (404)
Q Consensus 206 -~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 281 (404)
...+..+++|++|++++|.+..++ ...+..+++|++|++++|.+....+ ...+
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------------------~~~~ 249 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-----------------------APSC 249 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-----------------------CSCC
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-----------------------hhhh
Confidence 111245555666666655555322 1222344455555555554444331 1223
Q ss_pred cCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccc
Q psy12291 282 AGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWH 346 (404)
Q Consensus 282 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~ 346 (404)
..+++|++|++++|+++.++...+ ++|++|++++|++++++. +..+++|+.|++++|++.
T Consensus 250 ~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTT
T ss_pred hhcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCC
Confidence 334455555555555554433222 455555555555555532 455556666666666553
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=217.98 Aligned_cols=227 Identities=24% Similarity=0.389 Sum_probs=193.8
Q ss_pred CCCceEEecCCCCCccCCCCC-CCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeC
Q psy12291 22 PEIHTLSCWKQDMEELPFDQI-IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDL 100 (404)
Q Consensus 22 ~~~~~~~~~~~~l~~ip~~~~-~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 100 (404)
+..+.++..++.++.++...+ ...+++.|++++|.+..+.+.+|.++++|++|++++|+++.++...|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 346789999999999886532 3468999999999999999999999999999999999999999988999999999999
Q ss_pred CCCCCcccCccccCCCCCCcEEEccC-CCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCC
Q psy12291 101 SQNLIKTLPSTFFKGAIRLTVVQLSY-NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179 (404)
Q Consensus 101 ~~n~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~ 179 (404)
++|.++.+++..|..+++|++|++++ +.+..++...|.++++|+.|++++|.+..++ .+..+++|+.|++++|.++.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCc
Confidence 99999999998899999999999998 5677788888889999999999999888765 46778888888888888888
Q ss_pred CCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCc
Q psy12291 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE 250 (404)
Q Consensus 180 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 250 (404)
+++..|..+++|+.|++++|.++.+.+..|..+++|+.|++++|.++.+++..+..+++|+.|++++|.+.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 87777888888888888888888777777777777777777777777777666777777777777777553
No 69
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.95 E-value=9.7e-28 Score=220.37 Aligned_cols=229 Identities=26% Similarity=0.399 Sum_probs=180.5
Q ss_pred cEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccC-CCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCC
Q psy12291 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFN-YFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQ 246 (404)
Q Consensus 168 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 246 (404)
+.++++++.++.+|.... +.++.|++++|.++.+.+..+. .+++|+.|++++|.+..+++..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 567777777777765432 4577788888887777777676 788888888888888888777788888899999999
Q ss_pred CCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCcccc---CCCCCCcEEeCCCCCCcc
Q psy12291 247 NYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAF---EPMLHLKKLQLDSNKLQY 323 (404)
Q Consensus 247 ~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~---~~l~~L~~L~l~~n~l~~ 323 (404)
|.+..++...|..+++|+.|+|++|.++.+.+..|.++++|++|+|++|+++.++...| ..+++|+.|+|++|+++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99888888788889999999999999999888889999999999999999999888777 568999999999999999
Q ss_pred cCcccccCCCC--CcEEEccCCccccccCcHHH-HHHHHhccCccc--CCCCeeCCCCCCCCCcccCCCCcCCCCccccc
Q psy12291 324 LATDSLSLLPN--LITLKLAKNPWHCDCAILYM-ARWLRANRRKVW--DSKPTCRGPGNLGGKSVEDMSFDDLCEGQWAS 398 (404)
Q Consensus 324 ~~~~~~~~l~~--L~~l~l~~Np~~C~c~~~~~-~~~~~~~~~~~~--~~~~~C~~p~~l~~~~l~~~~~~~~C~~~~~~ 398 (404)
++...+..++. ++.|+|.+|||.|||.+.|+ ..|.......+. ....+|++|+.+.+ +..+. ...|......
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~--~~~~~-~~~C~~~~~~ 254 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHN--IFSLD-FFNCSEYKES 254 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHHTTGGGCEEESSSCCEE--GGGCC-CTTCCSCCCC
T ss_pred cCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchhccCcCCEeCCChHHcC--ccccc-cccCCCcccc
Confidence 99888888887 48899999999999999986 568765543332 23789999987754 33333 2338876655
Q ss_pred cccc
Q psy12291 399 MVKL 402 (404)
Q Consensus 399 ~~~~ 402 (404)
.+.+
T Consensus 255 ~v~v 258 (361)
T 2xot_A 255 AWEA 258 (361)
T ss_dssp CCEE
T ss_pred Ccee
Confidence 5443
No 70
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.1e-26 Score=218.19 Aligned_cols=227 Identities=27% Similarity=0.394 Sum_probs=191.0
Q ss_pred CCCceEEecCCCCCccCCCC-CCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeC
Q psy12291 22 PEIHTLSCWKQDMEELPFDQ-IIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDL 100 (404)
Q Consensus 22 ~~~~~~~~~~~~l~~ip~~~-~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 100 (404)
+..+.++..+++++.++... ....+++.|++++|.+..+.+..|.++++|++|+|++|+++.++...|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 35789999999999986653 33468999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCccccCCCCCCcEEEccC-CCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCC
Q psy12291 101 SQNLIKTLPSTFFKGAIRLTVVQLSY-NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179 (404)
Q Consensus 101 ~~n~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~ 179 (404)
++|.++.++...|..+++|+.|++++ +.+..++...|.++++|+.|++++|.+..++ .+..+++|+.|++++|.++.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcc
Confidence 99999999998899999999999998 6677888888888999999999999888764 46677888888888888888
Q ss_pred CCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCc
Q psy12291 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE 250 (404)
Q Consensus 180 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 250 (404)
+++..|..+++|+.|++++|.++.+.+..+..+++|+.|++++|.+..+++..+..+++|+.|++++|.+.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 77777777888888888888777777777777777777777777777776666666777777777776543
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=4.9e-30 Score=244.04 Aligned_cols=325 Identities=22% Similarity=0.215 Sum_probs=222.4
Q ss_pred CCceEEecCCCCCc-----cCCCCCCCCCeeEEEcCCCCCcccChhhc-CCCC----CCCEEEccCCcCcccC----ccc
Q psy12291 23 EIHTLSCWKQDMEE-----LPFDQIIPVDIRVIDLGINQLSTLSKDAF-TGLY----KLTELKLRKNHLSELP----GKL 88 (404)
Q Consensus 23 ~~~~~~~~~~~l~~-----ip~~~~~~~~l~~L~l~~~~i~~~~~~~~-~~~~----~L~~L~l~~~~l~~~~----~~~ 88 (404)
..+.++..++.+.. ++......+++++|++++|.+.......+ ..++ +|++|++++|+++... +..
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 46677777777763 22221123468888888888766443333 2344 5888888888877432 455
Q ss_pred ccCCCCCCEEeCCCCCCcccCc-----cccCCCCCCcEEEccCCCCCcCC----CccCCCCCCCCEEECCCCcccccccc
Q psy12291 89 FISTINLSTMDLSQNLIKTLPS-----TFFKGAIRLTVVQLSYNAIESLP----ANVFHDLISLEELDLSQNVLTSIQYG 159 (404)
Q Consensus 89 ~~~~~~L~~L~l~~n~l~~~~~-----~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~~~l~~~~~~ 159 (404)
|..+++|++|++++|.++.... ..+...++|++|++++|.++... ...+..+++|++|++++|.+......
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 188 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence 6778888888888887764322 22334567888888888777543 23345567888888888887655443
Q ss_pred ccc-----CCccCcEEeccCCCCCCCC----CCccCCCCCCCeEecCCCcCcccC-----CCccCCCCCCCEEECCCCcC
Q psy12291 160 TFS-----GMYSLKRLKLQSNRINQLP----PGIFDDLKYLDFLSLRNNRLSFIR-----PGLFNYFKHLTFLELSENWI 225 (404)
Q Consensus 160 ~l~-----~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~ 225 (404)
.+. ..++|++|++++|.++... +..+..+++|++|++++|.++... +..+..+++|++|++++|.+
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l 268 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 332 2558888888888887632 233456788999999998876532 23344678899999999988
Q ss_pred CCCC----hhhhcCCCCCcEEECCCCCCcccCcccc-----cCCCCCcEEECcCCCcccccc----ccccCCCCCCeeec
Q psy12291 226 SSLN----GDEFSQLTSLKELHLGQNYIETIPAGSF-----ANLQSLEKLFLYSNNIQELHA----GTFAGLTNLTALFL 292 (404)
Q Consensus 226 ~~~~----~~~~~~l~~L~~L~l~~~~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~l 292 (404)
+... +..+..+++|++|++++|.+.......+ ...++|+.|++++|.++.... ..+..+++|++|++
T Consensus 269 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 348 (461)
T 1z7x_W 269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348 (461)
T ss_dssp CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEEC
T ss_pred CHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEc
Confidence 7642 3455668899999999998864432222 233689999999998887532 34556799999999
Q ss_pred ccccccccCccccC-----CCCCCcEEeCCCCCCcc----cCcccccCCCCCcEEEccCCcccc
Q psy12291 293 NNNLLRYLDTKAFE-----PMLHLKKLQLDSNKLQY----LATDSLSLLPNLITLKLAKNPWHC 347 (404)
Q Consensus 293 ~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~l~l~~Np~~C 347 (404)
++|+++......+. ..++|++|++++|.++. ..+..+..+++|+.|++++|++..
T Consensus 349 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred cCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 99998876543332 26799999999999885 224456678999999999998754
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=6.2e-28 Score=230.00 Aligned_cols=226 Identities=25% Similarity=0.304 Sum_probs=199.6
Q ss_pred CCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeE
Q psy12291 115 GAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFL 194 (404)
Q Consensus 115 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 194 (404)
.+++|+.|++++|.++.+++..|..+++|+.|++++|.+....+ +..+++|++|++++|.++.+++. ++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~-----~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-----PSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC-----TTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC-----CCcCEE
Confidence 45689999999999999998889999999999999999987664 88999999999999999887642 789999
Q ss_pred ecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCccccc-CCCCCcEEECcCCCc
Q psy12291 195 SLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA-NLQSLEKLFLYSNNI 273 (404)
Q Consensus 195 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~L~~n~l 273 (404)
++++|.++.+++. .+++|+.|++++|.+....+..+..+++|+.|++++|.+..+++..+. .+++|+.|+|++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999987654 457899999999999999888899999999999999999987665564 789999999999999
Q ss_pred cccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHH
Q psy12291 274 QELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILY 353 (404)
Q Consensus 274 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~ 353 (404)
+.++. ...+++|++|+|++|+++.+++. +..+++|+.|++++|.+++++.. +..+++|+.|++++|++.|++...+
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCcCcchHHH
Confidence 98854 34589999999999999998776 77889999999999999998764 7889999999999999999865443
Q ss_pred H
Q psy12291 354 M 354 (404)
Q Consensus 354 ~ 354 (404)
+
T Consensus 258 ~ 258 (487)
T 3oja_A 258 F 258 (487)
T ss_dssp H
T ss_pred H
Confidence 3
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.95 E-value=1.6e-26 Score=201.34 Aligned_cols=188 Identities=35% Similarity=0.574 Sum_probs=160.5
Q ss_pred CCCCC--ceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCccccc
Q psy12291 13 CCEGP--CRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFI 90 (404)
Q Consensus 13 ~~~~~--c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 90 (404)
.||.. |.|.+..+.++|.+++++.+|.. ++.+++.|++++|.+..+.+..|.++++|++|++++|.+..+++..|.
T Consensus 3 ~Cp~~~gC~C~~~~~~l~~~~~~l~~~p~~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 80 (251)
T 3m19_A 3 TCETVTGCTCNEGKKEVDCQGKSLDSVPSG--IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80 (251)
T ss_dssp -CHHHHSSEEEGGGTEEECTTCCCSSCCSC--CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cCCCCCceEcCCCCeEEecCCCCccccCCC--CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence 35555 99988888999999999999986 678999999999999999888899999999999999999999988889
Q ss_pred CCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEE
Q psy12291 91 STINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRL 170 (404)
Q Consensus 91 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 170 (404)
.+++|++|++++|.++.+++..|..+++|++|++++|.++.++...|..+++|+.|++++|.+..+.+..|..+++|++|
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 99999999999999999988888889999999999999888888777888888888888888887777777777788888
Q ss_pred eccCCCCCCCCCCccCCCCCCCeEecCCCcCc
Q psy12291 171 KLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202 (404)
Q Consensus 171 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 202 (404)
++++|.++.+++..|..+++|+.|++++|.+.
T Consensus 161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 88888877777766677777777777776654
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4.8e-29 Score=224.55 Aligned_cols=232 Identities=16% Similarity=0.117 Sum_probs=152.8
Q ss_pred ccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcC--CCccC------CCCCCCCEEECCCCccccccccc
Q psy12291 89 FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL--PANVF------HDLISLEELDLSQNVLTSIQYGT 160 (404)
Q Consensus 89 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~------~~l~~L~~L~l~~~~l~~~~~~~ 160 (404)
+...++|++|++++|.+ .+|...... |+.|++++|.+..+ +.... .++++|++|++++|.+....+..
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45566788888888888 777653322 67777777766432 21110 03455666666665555433333
Q ss_pred c--cCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCC
Q psy12291 161 F--SGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238 (404)
Q Consensus 161 l--~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 238 (404)
+ ..+++|++|++++|.+++++ ..+..+. ...+++|++|++++|.+..+++..+..+++
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~-------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRD-AWLAELQ-------------------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSS-SHHHHHH-------------------TTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred HHHhcCCCccEEEccCCCCcchh-HHHHHHH-------------------HhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 2 45555555555555555442 2222220 001256677777777766666666777777
Q ss_pred CcEEECCCCCCccc---C-cccccCCCCCcEEECcCCCcccc---ccccccCCCCCCeeecccccccccCc-cccCCCCC
Q psy12291 239 LKELHLGQNYIETI---P-AGSFANLQSLEKLFLYSNNIQEL---HAGTFAGLTNLTALFLNNNLLRYLDT-KAFEPMLH 310 (404)
Q Consensus 239 L~~L~l~~~~l~~~---~-~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~ 310 (404)
|++|++++|.+... + ...+..+++|+.|++++|.++.+ ....+..+++|++|++++|+++...+ ..+..+++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 77777777775432 1 11236788999999999988843 33556678999999999999998763 56677899
Q ss_pred CcEEeCCCCCCcccCcccccCCCCCcEEEccCCcccc
Q psy12291 311 LKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHC 347 (404)
Q Consensus 311 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C 347 (404)
|++|++++|+++.++.... ++|+.|++++|.+.-
T Consensus 255 L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 255 LNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDR 288 (312)
T ss_dssp CCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCS
T ss_pred CCEEECCCCccChhhhhcc---CCceEEECCCCCCCC
Confidence 9999999999998876543 899999999999854
No 75
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.1e-26 Score=208.44 Aligned_cols=227 Identities=22% Similarity=0.247 Sum_probs=102.2
Q ss_pred CeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEcc
Q psy12291 46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLS 125 (404)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 125 (404)
.++.|++++|.+..++. .+.++++|++|++++|.+..+|.. |..+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCSSCCS-CGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEE
T ss_pred ceeEEEccCCCchhcCh-hhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECC
Confidence 46666666666665533 344566666666666666655432 35566666666666666655543 5556666666666
Q ss_pred CCCCC-cCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCccc
Q psy12291 126 YNAIE-SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204 (404)
Q Consensus 126 ~n~l~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 204 (404)
+|.+. .++.. +.. ..+ ...+.++++|++|++++|.++.++.. +..+++|++|++++|.++.+
T Consensus 159 ~n~~~~~~p~~-~~~------~~~---------~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 159 ACPELTELPEP-LAS------TDA---------SGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp EETTCCCCCSC-SEE------EC----------CCCEEESTTCCEEEEEEECCCCCCGG-GGGCTTCCEEEEESSCCCCC
T ss_pred CCCCccccChh-Hhh------ccc---------hhhhccCCCCCEEECcCCCcCcchHh-hcCCCCCCEEEccCCCCCcC
Confidence 54332 22221 111 000 01233344555555555555444322 34444444444444444433
Q ss_pred CCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCC
Q psy12291 205 RPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGL 284 (404)
Q Consensus 205 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 284 (404)
++ .+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+
T Consensus 222 ~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 222 GP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred ch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 22 23334444444444443333333333344444444444433322222223334444444444433333323333333
Q ss_pred CCCCeeecc
Q psy12291 285 TNLTALFLN 293 (404)
Q Consensus 285 ~~L~~L~l~ 293 (404)
++|+.+++.
T Consensus 301 ~~L~~l~l~ 309 (328)
T 4fcg_A 301 PANCIILVP 309 (328)
T ss_dssp CTTCEEECC
T ss_pred cCceEEeCC
Confidence 333333333
No 76
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=8.1e-26 Score=203.06 Aligned_cols=228 Identities=22% Similarity=0.276 Sum_probs=169.7
Q ss_pred CCCceEEecCCCCCccCCCC-CCCCCeeEEEcCCCCCcccC--hhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEE
Q psy12291 22 PEIHTLSCWKQDMEELPFDQ-IIPVDIRVIDLGINQLSTLS--KDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTM 98 (404)
Q Consensus 22 ~~~~~~~~~~~~l~~ip~~~-~~~~~l~~L~l~~~~i~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 98 (404)
+..+.++..++.++.+|... ....++++|++++|.+..+. +..+.++++|++|++++|.+..++.. |..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCCEE
Confidence 46789999999999999764 34568999999999998653 45667899999999999999988765 6889999999
Q ss_pred eCCCCCCcccCc-cccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccc-cccccccCCccCcEEeccCCC
Q psy12291 99 DLSQNLIKTLPS-TFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTS-IQYGTFSGMYSLKRLKLQSNR 176 (404)
Q Consensus 99 ~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~ 176 (404)
++++|.++.++. ..+..+++|++|++++|.+..+....+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 999999998876 568899999999999999988877778888899999999888775 445566777777777777777
Q ss_pred CCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCccc
Q psy12291 177 INQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS 256 (404)
Q Consensus 177 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 256 (404)
++.+++..+..+++|++|++++|.++.+.+..+ ..+++|++|++++|.+....+..
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------------------------~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY------------------------KCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG------------------------TTCTTCCEEECTTSCCCBCSSSS
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhc------------------------cCcccCCEeECCCCCCcccCHHH
Confidence 776665556666666666666665555444344 44455555555555555444444
Q ss_pred ccCCC-CCcEEECcCCCcc
Q psy12291 257 FANLQ-SLEKLFLYSNNIQ 274 (404)
Q Consensus 257 ~~~l~-~L~~L~L~~n~l~ 274 (404)
+..++ +|+.|++++|.++
T Consensus 243 ~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCCCTTCCEEECTTCCEE
T ss_pred HHhhhccCCEEEccCCCee
Confidence 44442 5666666666554
No 77
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.3e-26 Score=190.68 Aligned_cols=174 Identities=24% Similarity=0.469 Sum_probs=150.0
Q ss_pred CEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccc
Q psy12291 216 TFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNN 295 (404)
Q Consensus 216 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 295 (404)
+.++++++.+..++.. + .++|++|++++|.+..++. .+..+++|+.|+|++|.++.+++.+|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCC-C--CCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 5677777777776642 2 2578899999999988884 7888999999999999999998888999999999999999
Q ss_pred cccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHHHHHHHHhccCcccCCCCeeCCC
Q psy12291 296 LLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGP 375 (404)
Q Consensus 296 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~p 375 (404)
+++.+++..|..+++|+.|+|++|+++.++...+..+++|+.|++++|||.|||.+.|+..|+..... .....+|++|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~--~~~~~~C~~P 166 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYK--EPGIARCAGP 166 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSC--CCSCCBEEES
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccC--CCCCcCcCCc
Confidence 99999999999999999999999999999998899999999999999999999999999999987532 2246799999
Q ss_pred CCCCCCcccCCCCcCC-CCcc
Q psy12291 376 GNLGGKSVEDMSFDDL-CEGQ 395 (404)
Q Consensus 376 ~~l~~~~l~~~~~~~~-C~~~ 395 (404)
+.++|+.+.+++.+.+ |...
T Consensus 167 ~~l~g~~l~~~~~~~~~~~~~ 187 (193)
T 2wfh_A 167 GEMADKLLLTTPSKKFTCAAA 187 (193)
T ss_dssp GGGTTCBTTTSCGGGCCC---
T ss_pred hHHCCCCcccCChHHeeehhh
Confidence 9999999999998776 5443
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=1.9e-25 Score=196.89 Aligned_cols=197 Identities=32% Similarity=0.543 Sum_probs=160.6
Q ss_pred cCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcE
Q psy12291 162 SGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE 241 (404)
Q Consensus 162 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 241 (404)
..+++|+.|++.++.+..++. +..+++|++|++++|.++.+ ..+..+++|++|++++|.+..+++..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 344566666666666665443 45666777777777766654 24667778888888888888777777788888888
Q ss_pred EECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCC
Q psy12291 242 LHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKL 321 (404)
Q Consensus 242 L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 321 (404)
|++++|.+..+++..+..+++|+.|++++|.++.+++..|..+++|++|++++|+++.+++..+..+++|++|++++|++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 88888888888877788889999999999999988888888899999999999999998888889999999999999999
Q ss_pred cccCcccccCCCCCcEEEccCCccccccC-cHHHHHHHHhcc
Q psy12291 322 QYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANR 362 (404)
Q Consensus 322 ~~~~~~~~~~l~~L~~l~l~~Np~~C~c~-~~~~~~~~~~~~ 362 (404)
+++++..+..+++|+.|++++|||.|+|+ +.++..|.....
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS 235 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTG
T ss_pred CccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCC
Confidence 99998888999999999999999999997 667777776543
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=3.4e-25 Score=196.89 Aligned_cols=202 Identities=31% Similarity=0.412 Sum_probs=165.1
Q ss_pred eecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEE
Q psy12291 19 RCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTM 98 (404)
Q Consensus 19 ~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 98 (404)
.+.+..+.++|.+++++.+|.. ++.+++.|++++|.+..+.+..|.++++|+.|++++|.++.++.. ..+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~--~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSC--CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCC--CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 3345688999999999999976 678999999999999999888999999999999999999988764 678999999
Q ss_pred eCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCC
Q psy12291 99 DLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178 (404)
Q Consensus 99 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 178 (404)
++++|.++.+|.. +..+++|++|++++|.++.+++..|.++++|+.|++++|.+..+.+..|..+++|+.|++++|.++
T Consensus 83 ~Ls~N~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCCcCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 9999999988864 678889999999999998888877888888888888888888887777777888888888888888
Q ss_pred CCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCC
Q psy12291 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226 (404)
Q Consensus 179 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 226 (404)
.+++..|..+++|+.|++++|+++.++.. +...++|+.+++++|.+.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~-~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCBC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCccChh-hcccccCCeEEeCCCCcc
Confidence 88777777777777777777777755433 333445666666655543
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=7.2e-29 Score=236.00 Aligned_cols=323 Identities=18% Similarity=0.165 Sum_probs=215.1
Q ss_pred CceEEecCCCCCccCCCC--CCCCCeeEEEcCCCCCcccC----hhhcCCCCCCCEEEccCCcCcccCc-ccccCCC---
Q psy12291 24 IHTLSCWKQDMEELPFDQ--IIPVDIRVIDLGINQLSTLS----KDAFTGLYKLTELKLRKNHLSELPG-KLFISTI--- 93 (404)
Q Consensus 24 ~~~~~~~~~~l~~ip~~~--~~~~~l~~L~l~~~~i~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~--- 93 (404)
.+.++..++.+...+... ...+++++|++++|.++... +..+..+++|++|++++|.+.+... ..+..++
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 84 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 84 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCC
Confidence 455666666666543221 12246888888888876432 3446667888888888888775332 2223344
Q ss_pred -CCCEEeCCCCCCcccC----ccccCCCCCCcEEEccCCCCCcCCC-----ccCCCCCCCCEEECCCCcccccc----cc
Q psy12291 94 -NLSTMDLSQNLIKTLP----STFFKGAIRLTVVQLSYNAIESLPA-----NVFHDLISLEELDLSQNVLTSIQ----YG 159 (404)
Q Consensus 94 -~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~~~l~~~~----~~ 159 (404)
+|++|++++|.++... +..+..+++|++|++++|.++.... ..+...++|++|++++|.+.... +.
T Consensus 85 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 85 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 6888888888877422 3447778888888888887764221 22333567888888888777644 23
Q ss_pred cccCCccCcEEeccCCCCCCCCCCccC-----CCCCCCeEecCCCcCcccC----CCccCCCCCCCEEECCCCcCCCCCh
Q psy12291 160 TFSGMYSLKRLKLQSNRINQLPPGIFD-----DLKYLDFLSLRNNRLSFIR----PGLFNYFKHLTFLELSENWISSLNG 230 (404)
Q Consensus 160 ~l~~l~~L~~L~l~~~~l~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~ 230 (404)
.+..+++|++|++++|.++......+. ..++|++|++++|.++... +..+..+++|++|++++|.+.....
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 455567888888888887643322221 2457888888888877532 3445567888888888887765432
Q ss_pred -----hhhcCCCCCcEEECCCCCCcccC----cccccCCCCCcEEECcCCCcccccccccc-----CCCCCCeeeccccc
Q psy12291 231 -----DEFSQLTSLKELHLGQNYIETIP----AGSFANLQSLEKLFLYSNNIQELHAGTFA-----GLTNLTALFLNNNL 296 (404)
Q Consensus 231 -----~~~~~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~ 296 (404)
..+..+++|++|++++|.++... ...+..+++|+.|++++|.+.+.....+. ..++|++|++++|.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 22235778888888888887632 12455678889999988888765443332 23688999999888
Q ss_pred ccccCc----cccCCCCCCcEEeCCCCCCcccCcccccC-----CCCCcEEEccCCccc
Q psy12291 297 LRYLDT----KAFEPMLHLKKLQLDSNKLQYLATDSLSL-----LPNLITLKLAKNPWH 346 (404)
Q Consensus 297 i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~l~l~~Np~~ 346 (404)
++.... ..+..+++|++|++++|.+++.....+.. .++|+.|++++|.+.
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 876542 44556788999999999888765443332 678999999988764
No 81
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.94 E-value=9.1e-26 Score=188.07 Aligned_cols=177 Identities=25% Similarity=0.492 Sum_probs=153.3
Q ss_pred CEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcc-cccCCCCCcEEECcCCCccccccccccCCCCCCeeeccc
Q psy12291 216 TFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAG-SFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN 294 (404)
Q Consensus 216 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 294 (404)
+.++++++.+..++.. +. .+|++|++++|.+..++.. .+..+++|+.|+|++|.++.+.+..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~-~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSC-CC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccC-CC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 5677777777776642 22 3788999999998888763 578899999999999999999888899999999999999
Q ss_pred ccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHHHHHHHHhccCcccCCCCeeCC
Q psy12291 295 NLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRG 374 (404)
Q Consensus 295 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~ 374 (404)
|+++.+++..|..+++|++|+|++|+++++.+..+..+++|+.|++++|||.|+|.+.|+..|++..... .....|++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~--~~~~~C~~ 165 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLN--GGAARCGA 165 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCS--GGGCBBCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCC--CCCCCCCC
Confidence 9999999888999999999999999999998888999999999999999999999999999999876432 24688999
Q ss_pred CCCCCCCcccCCCCcCC-CCcccc
Q psy12291 375 PGNLGGKSVEDMSFDDL-CEGQWA 397 (404)
Q Consensus 375 p~~l~~~~l~~~~~~~~-C~~~~~ 397 (404)
|+.++|+.+.++...++ |.+..+
T Consensus 166 P~~l~~~~l~~l~~~~~~C~~~~~ 189 (192)
T 1w8a_A 166 PSKVRDVQIKDLPHSEFKCSSENS 189 (192)
T ss_dssp STTTTTSBGGGSCTTTCCCCCC--
T ss_pred ChHHcCCChhhCcHhhcCcCCCCC
Confidence 99999999999998887 876543
No 82
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.94 E-value=2.6e-25 Score=190.69 Aligned_cols=196 Identities=29% Similarity=0.489 Sum_probs=154.1
Q ss_pred CCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcC
Q psy12291 191 LDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYS 270 (404)
Q Consensus 191 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~ 270 (404)
-+.++.+++.++.++... .++|++|++++|.+..+.+..|..+++|++|++++|.+..++...|..+++|+.|+|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 344555555555544322 25677777777777777666777788888888888888888777778888888888888
Q ss_pred CCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccC
Q psy12291 271 NNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA 350 (404)
Q Consensus 271 n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~ 350 (404)
|.++.++...|..+++|++|++++|+++.++ ..+..+++|+.|++++|+++.++...+..+++|+.|++++|||.|+|.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8888888878888899999999999988774 445788999999999999999998889999999999999999999996
Q ss_pred -cHHHHHHHHhccCcc---------cCCCCeeCCCCCCCCCcccCCCCcCCCCc
Q psy12291 351 -ILYMARWLRANRRKV---------WDSKPTCRGPGNLGGKSVEDMSFDDLCEG 394 (404)
Q Consensus 351 -~~~~~~~~~~~~~~~---------~~~~~~C~~p~~l~~~~l~~~~~~~~C~~ 394 (404)
+.++..|+......+ ......|++| |.++.+++....|..
T Consensus 177 ~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~----~~~~~~~~~~~~~~~ 226 (229)
T 3e6j_A 177 DIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGT----NTPVRAVTEASTSPS 226 (229)
T ss_dssp GGHHHHHHHHHCGGGEEEESSSEEECTTCSBBTTT----CCBGGGCCGGGCBTT
T ss_pred hhHHHHHHHHhCccccccccCcccCCCCcCccCCC----CccceeccccccCcc
Confidence 889999998765433 1226789886 678888887777643
No 83
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=6.7e-26 Score=205.13 Aligned_cols=232 Identities=18% Similarity=0.197 Sum_probs=109.1
Q ss_pred CCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEecc
Q psy12291 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQ 173 (404)
Q Consensus 94 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 173 (404)
++++|++++|.++.+|+. +..+++|++|++++|.++.++.. +..+++|++|++++|.+..+ +..+.++++|++|+++
T Consensus 82 ~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccC-cHHHhcCcCCCEEECC
Confidence 344444444444444433 22344444444444444433321 23444444444444444433 2334444555555555
Q ss_pred CCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccC
Q psy12291 174 SNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIP 253 (404)
Q Consensus 174 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 253 (404)
+|.+.+..+..+.. ..+ ...+..+++|++|++++|.+..++ ..+..+++|++|++++|.+..++
T Consensus 159 ~n~~~~~~p~~~~~------~~~---------~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~l~ 222 (328)
T 4fcg_A 159 ACPELTELPEPLAS------TDA---------SGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALG 222 (328)
T ss_dssp EETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCCCC
T ss_pred CCCCccccChhHhh------ccc---------hhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCcCc
Confidence 54332222111111 000 011233444555555555444333 23455555555555555555554
Q ss_pred cccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCC
Q psy12291 254 AGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLP 333 (404)
Q Consensus 254 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 333 (404)
. .+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|+|++|.+.+..+..+..++
T Consensus 223 ~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 223 P-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp G-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred h-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence 4 345555555555555555544444555555566666655555444444455556666666666555554445555566
Q ss_pred CCcEEEccCCcc
Q psy12291 334 NLITLKLAKNPW 345 (404)
Q Consensus 334 ~L~~l~l~~Np~ 345 (404)
+++.+++..|.+
T Consensus 302 ~L~~l~l~~~~~ 313 (328)
T 4fcg_A 302 ANCIILVPPHLQ 313 (328)
T ss_dssp TTCEEECCGGGS
T ss_pred CceEEeCCHHHH
Confidence 666666554433
No 84
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=6.1e-26 Score=201.71 Aligned_cols=206 Identities=28% Similarity=0.376 Sum_probs=165.8
Q ss_pred cCCCceEEecCCCCCccCCCC-CCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCc-CcccCcccccCCCCCCEE
Q psy12291 21 RPEIHTLSCWKQDMEELPFDQ-IIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNH-LSELPGKLFISTINLSTM 98 (404)
Q Consensus 21 ~~~~~~~~~~~~~l~~ip~~~-~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L 98 (404)
.+..+.++..++.++.++... ....++++|++++|.+..+.+.+|.++++|++|++++|. +..+++..|..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 346789999999999998653 234689999999999999988899999999999999997 999988889999999999
Q ss_pred eCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCC
Q psy12291 99 DLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178 (404)
Q Consensus 99 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 178 (404)
++++|.++.+++..|.++++|++|++++|.++.++...|..+++|+.|++++|.+..+....+.++++|++|++++|.++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 99999999998888889999999999999998888777788888888888888888777666777777777777777777
Q ss_pred CCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCC
Q psy12291 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226 (404)
Q Consensus 179 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 226 (404)
.+.+..|..+++|+.|++++|.++.+++..+..+++|+.|++++|.+.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 666555666666666666666665555444555555555555555544
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.94 E-value=2.9e-26 Score=209.73 Aligned_cols=245 Identities=25% Similarity=0.322 Sum_probs=161.9
Q ss_pred CEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCC-cCCCccCCCCCCCCE-EECC
Q psy12291 72 TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE-SLPANVFHDLISLEE-LDLS 149 (404)
Q Consensus 72 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~-L~l~ 149 (404)
++++.++++++++|... .+++++|++++|+|+.+++.+|.++++|++|+|++|.+. .++..+|.++++++. +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45666777777777654 346777777777777777766777777777777777653 355566666666554 3444
Q ss_pred CCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCC
Q psy12291 150 QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229 (404)
Q Consensus 150 ~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 229 (404)
+|.+..+.+..|.++++|++|++++|.+..+++..+....++..+++.+ .+.+..++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~-----------------------~~~i~~l~ 145 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD-----------------------NINIHTIE 145 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES-----------------------CTTCCEEC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcc-----------------------cccccccc
Confidence 5666666666666666666666666666665554444444444444432 12344444
Q ss_pred hhhhcCCC-CCcEEECCCCCCcccCcccccCCCCCcEEECc-CCCccccccccccCCCCCCeeecccccccccCccccCC
Q psy12291 230 GDEFSQLT-SLKELHLGQNYIETIPAGSFANLQSLEKLFLY-SNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEP 307 (404)
Q Consensus 230 ~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 307 (404)
...|..+. .++.|++++|+++.++...+. ..+|+.|++. +|.++.++..+|.++++|++|++++|+|+.++...+.
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~- 223 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE- 223 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT-
T ss_pred ccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc-
Confidence 44444443 577788888888888775553 4678888886 4778888888888888888999988888888776665
Q ss_pred CCCCcEEeCCC-CCCcccCcccccCCCCCcEEEccCCcccccc
Q psy12291 308 MLHLKKLQLDS-NKLQYLATDSLSLLPNLITLKLAKNPWHCDC 349 (404)
Q Consensus 308 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c 349 (404)
+|+.|.+.+ +.++.++. +..+++|+.+++. ||++|.|
T Consensus 224 --~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~-~~~~c~~ 261 (350)
T 4ay9_X 224 --NLKKLRARSTYNLKKLPT--LEKLVALMEASLT-YPSHCCA 261 (350)
T ss_dssp --TCCEEECTTCTTCCCCCC--TTTCCSCCEEECS-CHHHHHH
T ss_pred --cchHhhhccCCCcCcCCC--chhCcChhhCcCC-CCccccc
Confidence 445555444 45777764 7788999999985 7888855
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.93 E-value=1.5e-25 Score=193.84 Aligned_cols=205 Identities=23% Similarity=0.428 Sum_probs=128.0
Q ss_pred CcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCc-ccccccccccCCccCcEEeccC-CCCCCCCC
Q psy12291 105 IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNV-LTSIQYGTFSGMYSLKRLKLQS-NRINQLPP 182 (404)
Q Consensus 105 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~ 182 (404)
++.+|. + .++|++|++++|.++.++...|.++++|+.|++++|. +..+.+..|.++++|++|++++ |.++.+++
T Consensus 23 l~~ip~--~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 555554 2 2366677777776666666666666666666666665 6666655666666666666665 66666665
Q ss_pred CccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCc---EEECCCC-CCcccCccccc
Q psy12291 183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLK---ELHLGQN-YIETIPAGSFA 258 (404)
Q Consensus 183 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~l~~~~~~~~~ 258 (404)
..|..+++|++|++++|.++.+ +. +..+++|+ +|++++| .+..++...|.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~l------------------------p~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~ 152 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMF------------------------PD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSC------------------------CC--CTTCCBCCSEEEEEEESCTTCCEECTTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCccc------------------------cc--cccccccccccEEECCCCcchhhcCccccc
Confidence 5555556666666655555443 21 33444444 6666666 66666655566
Q ss_pred CCCCCc-EEECcCCCccccccccccCCCCCCeeeccccc-ccccCccccCCC-CCCcEEeCCCCCCcccCcccccCCCCC
Q psy12291 259 NLQSLE-KLFLYSNNIQELHAGTFAGLTNLTALFLNNNL-LRYLDTKAFEPM-LHLKKLQLDSNKLQYLATDSLSLLPNL 335 (404)
Q Consensus 259 ~l~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L 335 (404)
.+++|+ .|++++|.++.++...|.. ++|++|++++|+ ++.+++..|..+ ++|+.|++++|+++.++.. .+++|
T Consensus 153 ~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L 228 (239)
T 2xwt_C 153 GLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHL 228 (239)
T ss_dssp TTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTC
T ss_pred chhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccC
Confidence 666666 6666666666666555555 667777777773 666666666666 6777777777777766654 45667
Q ss_pred cEEEccCC
Q psy12291 336 ITLKLAKN 343 (404)
Q Consensus 336 ~~l~l~~N 343 (404)
+.|++.++
T Consensus 229 ~~L~l~~~ 236 (239)
T 2xwt_C 229 KELIARNT 236 (239)
T ss_dssp SEEECTTC
T ss_pred ceeeccCc
Confidence 77777654
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=5.3e-25 Score=194.08 Aligned_cols=177 Identities=32% Similarity=0.494 Sum_probs=81.5
Q ss_pred CCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEe
Q psy12291 92 TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLK 171 (404)
Q Consensus 92 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~ 171 (404)
+++|+.|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|++++|.+..+.+..+.++++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 4444555555554444432 334444444544444444432 233444444444444444444444444444444444
Q ss_pred ccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcc
Q psy12291 172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIET 251 (404)
Q Consensus 172 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 251 (404)
+++|.++.+++..|..+++|++|++++|.++.+++..+..+++|++|++++|.+..+++..+..+++|++|++++|.+..
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 44444444444444444444444444444444443334444444444444444444443334444445555555444444
Q ss_pred cCcccccCCCCCcEEECcCCC
Q psy12291 252 IPAGSFANLQSLEKLFLYSNN 272 (404)
Q Consensus 252 ~~~~~~~~l~~L~~L~L~~n~ 272 (404)
+++..+..+++|+.|++++|.
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred cCHHHHhCCcCCCEEEccCCC
Confidence 444444444455555554443
No 88
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.93 E-value=7.6e-25 Score=185.21 Aligned_cols=189 Identities=31% Similarity=0.475 Sum_probs=162.6
Q ss_pred CCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCC
Q psy12291 14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTI 93 (404)
Q Consensus 14 ~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 93 (404)
||..|.|. +..++|.+.+++.+|.. .+.++++|++++|.++.+.+..|.++++|++|++++|++..++...|..++
T Consensus 1 Cp~~C~C~--~~~v~c~~~~l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 76 (208)
T 2o6s_A 1 CPSRCSCS--GTTVECYSQGRTSVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76 (208)
T ss_dssp CCTTCEEE--TTEEECCSSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CcCCCEEC--CCEEEecCCCccCCCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC
Confidence 78999996 57899999999999976 677999999999999999888899999999999999999999988889999
Q ss_pred CCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEecc
Q psy12291 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQ 173 (404)
Q Consensus 94 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 173 (404)
+|++|++++|.++.+++..|..+++|++|++++|.++.++...|..+++|+.|++++|.+..+....+..+++|++|+++
T Consensus 77 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence 99999999999999988888899999999999999998888878888899999999998888877778888888999888
Q ss_pred CCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCC
Q psy12291 174 SNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK 213 (404)
Q Consensus 174 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 213 (404)
+|.+. ..+++|++|++..|.+++..+..++.++
T Consensus 157 ~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 157 DNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp SCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CCCee-------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 88553 3456778888887777766555555443
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.92 E-value=5e-25 Score=197.70 Aligned_cols=211 Identities=24% Similarity=0.369 Sum_probs=165.3
Q ss_pred EEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcc
Q psy12291 74 LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL 153 (404)
Q Consensus 74 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 153 (404)
+.+..+.+.++.. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|+.|++++|.+
T Consensus 24 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 24 IAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred HHhCCCCcCceec--HHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC
Confidence 3445555554322 2457789999999999988874 7788999999999999888876 77888999999999988
Q ss_pred cccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhh
Q psy12291 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEF 233 (404)
Q Consensus 154 ~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 233 (404)
..+. .+..+++|++|++++|.++.+++ +..+++|++|++++|.++.+.+ +..+++|+.|++++|.+..+++ +
T Consensus 98 ~~~~--~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l 169 (308)
T 1h6u_A 98 KNVS--AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--L 169 (308)
T ss_dssp SCCG--GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred CCch--hhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--h
Confidence 8764 57788889999999988888764 6788888888888888877654 6777888888888888877654 7
Q ss_pred cCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCc
Q psy12291 234 SQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDT 302 (404)
Q Consensus 234 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 302 (404)
..+++|+.|++++|.+..++. +..+++|+.|++++|.++.+++ +..+++|++|++++|.++..+.
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence 778888888888888877765 6677888888888888887763 6777888888888888776544
No 90
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.92 E-value=6.7e-24 Score=180.67 Aligned_cols=164 Identities=30% Similarity=0.519 Sum_probs=136.6
Q ss_pred CCCCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCccccc
Q psy12291 11 YRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFI 90 (404)
Q Consensus 11 ~~~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 90 (404)
...||..|.|.. ..++|.+++++.+|.. ++.+++.|++++|.|..+.+..|.++++|+.|++++|++..+.+..|.
T Consensus 2 ~~~CP~~C~C~~--~~v~c~~~~l~~iP~~--l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~ 77 (220)
T 2v9t_B 2 SLHCPAACTCSN--NIVDCRGKGLTEIPTN--LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 77 (220)
T ss_dssp CCCSCTTSEEET--TEEECTTSCCSSCCSS--CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CCCCCCCCEECC--CEEEcCCCCcCcCCCc--cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh
Confidence 346899999974 6899999999999986 678899999999999999888899999999999999999988888888
Q ss_pred CCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEE
Q psy12291 91 STINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRL 170 (404)
Q Consensus 91 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 170 (404)
.+++|++|++++|.++.+++..|.++++|++|++++|.++.+++..|..+++|+.|++++|.+..+.+..|..+++|+.|
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 88999999999998888888878888888888888888888777777777777777777777777766666666677777
Q ss_pred eccCCCCC
Q psy12291 171 KLQSNRIN 178 (404)
Q Consensus 171 ~l~~~~l~ 178 (404)
++++|.+.
T Consensus 158 ~L~~N~~~ 165 (220)
T 2v9t_B 158 HLAQNPFI 165 (220)
T ss_dssp ECCSSCEE
T ss_pred EeCCCCcC
Confidence 77666543
No 91
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.91 E-value=3.6e-24 Score=196.61 Aligned_cols=187 Identities=32% Similarity=0.455 Sum_probs=164.1
Q ss_pred CCCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcC-CCCCCCEEEccCCcCcccCccccc
Q psy12291 12 RCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFT-GLYKLTELKLRKNHLSELPGKLFI 90 (404)
Q Consensus 12 ~~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~ 90 (404)
..||..|.|.. +.++|.+++++.+|.. ++..++.|++++|.|+.+.+..|. ++++|+.|+|++|+|..+++..|.
T Consensus 10 ~~Cp~~C~C~~--~~l~c~~~~l~~iP~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 85 (361)
T 2xot_A 10 VSCPANCLCAS--NILSCSKQQLPNVPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV 85 (361)
T ss_dssp TTCCTTCEEET--TEEECCSSCCSSCCSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT
T ss_pred CCCCCCCEECC--CEEEeCCCCcCccCcc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc
Confidence 36899999974 6899999999999986 778899999999999999888887 999999999999999999988899
Q ss_pred CCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccc---cCCccC
Q psy12291 91 STINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTF---SGMYSL 167 (404)
Q Consensus 91 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l---~~l~~L 167 (404)
.+++|++|++++|.++.+++..|.++++|++|+|++|.++.+.+..|.++++|+.|++++|.+..++...| ..+++|
T Consensus 86 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence 99999999999999999998889999999999999999999988888999999999999999998887766 567889
Q ss_pred cEEeccCCCCCCCCCCccCCCCC--CCeEecCCCcCc
Q psy12291 168 KRLKLQSNRINQLPPGIFDDLKY--LDFLSLRNNRLS 202 (404)
Q Consensus 168 ~~L~l~~~~l~~~~~~~~~~l~~--L~~L~l~~~~~~ 202 (404)
+.|++++|.++.++...+..++. ++.|++.+|.+.
T Consensus 166 ~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 99999999888887666666665 377888877654
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=1.2e-23 Score=188.65 Aligned_cols=210 Identities=26% Similarity=0.394 Sum_probs=157.0
Q ss_pred EcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCC
Q psy12291 51 DLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE 130 (404)
Q Consensus 51 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 130 (404)
.+..+.+..+. .+..+++|++|+++++.+..++. +..+++|++|++++|.++.+++ +..+++|++|++++|.++
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC
Confidence 34444444421 23456778888888888887763 5677888888888888887776 777888888888888887
Q ss_pred cCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccC
Q psy12291 131 SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFN 210 (404)
Q Consensus 131 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 210 (404)
.++. +..+++|+.|++++|.+..+. .+..+++|++|++++|.++.+++ +..+++|+.|++++|.++.+.+ +.
T Consensus 99 ~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~ 170 (308)
T 1h6u_A 99 NVSA--IAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LA 170 (308)
T ss_dssp CCGG--GTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred Cchh--hcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hc
Confidence 7653 667788888888888877765 37777888888888888877665 6777888888888888776654 77
Q ss_pred CCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCcccccc
Q psy12291 211 YFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHA 278 (404)
Q Consensus 211 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 278 (404)
.+++|+.|++++|.+..+++ +..+++|++|++++|.+..+++ +..+++|+.|++++|.++..+.
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence 78888888888888877653 6777888888888888877764 6778888888888888776654
No 93
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.2e-23 Score=183.27 Aligned_cols=205 Identities=23% Similarity=0.291 Sum_probs=171.4
Q ss_pred CCCceEEecCCCCCccCCCC-CCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeC
Q psy12291 22 PEIHTLSCWKQDMEELPFDQ-IIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDL 100 (404)
Q Consensus 22 ~~~~~~~~~~~~l~~ip~~~-~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 100 (404)
+..+.++..++.++.++... ....++++|++++|.+..+.+..|.++++|++|++++|.+..++...|..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45889999999999998743 33468999999999999999889999999999999999999999888999999999999
Q ss_pred CCCCCcccCccccCCCCCCcEEEccCCCCCcCC-CccCCCCCCCCEEECCCCcccccccccccCCccCc----EEeccCC
Q psy12291 101 SQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP-ANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK----RLKLQSN 175 (404)
Q Consensus 101 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~----~L~l~~~ 175 (404)
++|.+..+++..+..+++|++|++++|.++.+. +..+..+++|+.|++++|.+..+.+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 999999998877999999999999999998864 55678899999999999999988777777666666 7888888
Q ss_pred CCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCC
Q psy12291 176 RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227 (404)
Q Consensus 176 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 227 (404)
.++.+++..+.. .+|+.|++++|.++.+++..+..+++|+.|++++|.+..
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 888777766543 367777777777777666666667777777777766653
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=3.7e-25 Score=203.38 Aligned_cols=254 Identities=19% Similarity=0.240 Sum_probs=125.4
Q ss_pred EEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCc----ccccCCC-CCCEEeCCCCCCcccCccccCCC-----CCC
Q psy12291 50 IDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG----KLFISTI-NLSTMDLSQNLIKTLPSTFFKGA-----IRL 119 (404)
Q Consensus 50 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~-----~~L 119 (404)
++++.|++.+..+..+...++|++|++++|.++..+. ..|..++ +|++|++++|.++......+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666666555555555557777777777666665 4555566 66777777666665544333332 555
Q ss_pred cEEEccCCCCCcCCCcc----CCCC-CCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCC-CCCCCe
Q psy12291 120 TVVQLSYNAIESLPANV----FHDL-ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDD-LKYLDF 193 (404)
Q Consensus 120 ~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~-l~~L~~ 193 (404)
++|++++|.++...... +..+ ++|+.|++++|.+.......+.. .+.. .++|++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L~~ 142 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASITS 142 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTCCE
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCceeE
Confidence 55555555555433221 1222 44555555555444433322211 0111 124444
Q ss_pred EecCCCcCcccCC----CccCCCC-CCCEEECCCCcCCCCChhhh----cCC-CCCcEEECCCCCCcccCcc----cccC
Q psy12291 194 LSLRNNRLSFIRP----GLFNYFK-HLTFLELSENWISSLNGDEF----SQL-TSLKELHLGQNYIETIPAG----SFAN 259 (404)
Q Consensus 194 L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~l~~~~l~~~~~~----~~~~ 259 (404)
|++++|.++.... ..+...+ +|++|++++|.+.......+ ... ++|++|++++|.+...... .+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 4444444432111 1112222 55566666665555443322 233 3666666666666552211 1222
Q ss_pred -CCCCcEEECcCCCcccccc----ccccCCCCCCeeecccccccccCcc-------ccCCCCCCcEEeCCCCCCcc
Q psy12291 260 -LQSLEKLFLYSNNIQELHA----GTFAGLTNLTALFLNNNLLRYLDTK-------AFEPMLHLKKLQLDSNKLQY 323 (404)
Q Consensus 260 -l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~~-------~~~~l~~L~~L~l~~n~l~~ 323 (404)
.++|+.|+|++|.+++.+. ..+..+++|++|++++|.+..+... .+..+++|+.|++++|++..
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 3466666666666665544 2234556666666666664444332 23344444455555554443
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=4.2e-25 Score=202.99 Aligned_cols=267 Identities=17% Similarity=0.193 Sum_probs=168.3
Q ss_pred EEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCc----cccCCCC-CCcEEEccCCCCCcCCCccCCCCCCCCEEEC
Q psy12291 74 LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPS----TFFKGAI-RLTVVQLSYNAIESLPANVFHDLISLEELDL 148 (404)
Q Consensus 74 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 148 (404)
+.++.+.+.+..+..+...++|++|++++|.++..+. ..|..++ +|++|++++|.++......+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-------- 74 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI-------- 74 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH--------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH--------
Confidence 3455555554444433444445555555555555544 3344444 45555555554444332222221
Q ss_pred CCCcccccccccccC-CccCcEEeccCCCCCCCCCCc----cCCC-CCCCeEecCCCcCcccCCCc----cCC-CCCCCE
Q psy12291 149 SQNVLTSIQYGTFSG-MYSLKRLKLQSNRINQLPPGI----FDDL-KYLDFLSLRNNRLSFIRPGL----FNY-FKHLTF 217 (404)
Q Consensus 149 ~~~~l~~~~~~~l~~-l~~L~~L~l~~~~l~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~ 217 (404)
+.. .++|++|++++|.++...... +..+ ++|++|++++|.++...... +.. .++|++
T Consensus 75 ------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 75 ------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp ------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred ------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 001 145555555555554433321 2222 56666666666665544322 333 369999
Q ss_pred EECCCCcCCCCChhh----hcCCC-CCcEEECCCCCCcccCccc----ccCC-CCCcEEECcCCCccccccc----cccC
Q psy12291 218 LELSENWISSLNGDE----FSQLT-SLKELHLGQNYIETIPAGS----FANL-QSLEKLFLYSNNIQELHAG----TFAG 283 (404)
Q Consensus 218 L~l~~~~~~~~~~~~----~~~l~-~L~~L~l~~~~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~----~~~~ 283 (404)
|++++|.+....... +..++ +|++|++++|.+....... +..+ ++|+.|+|++|.+++.... .+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 999999998665443 34555 9999999999998776533 3445 5999999999999984332 3333
Q ss_pred -CCCCCeeecccccccccCc----cccCCCCCCcEEeCCCCCCcccCcc-------cccCCCCCcEEEccCCccccccCc
Q psy12291 284 -LTNLTALFLNNNLLRYLDT----KAFEPMLHLKKLQLDSNKLQYLATD-------SLSLLPNLITLKLAKNPWHCDCAI 351 (404)
Q Consensus 284 -~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~l~l~~Np~~C~c~~ 351 (404)
.++|++|+|++|+++..+. ..+..+++|+.|++++|.+..+... .+..+++|+.|++++|++... ..
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~-~~ 301 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS-HS 301 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG-GC
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc-ch
Confidence 4699999999999998766 4457789999999999997666553 456778899999999998765 34
Q ss_pred HHHHHHHHhc
Q psy12291 352 LYMARWLRAN 361 (404)
Q Consensus 352 ~~~~~~~~~~ 361 (404)
..+..+++..
T Consensus 302 ~~~~~~l~~~ 311 (362)
T 3goz_A 302 IPISNLIREL 311 (362)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHC
Confidence 4555666554
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.90 E-value=6.3e-23 Score=174.65 Aligned_cols=162 Identities=26% Similarity=0.463 Sum_probs=132.5
Q ss_pred CCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccCh-hhcCCCCCCCEEEccCCcCcccCcccccC
Q psy12291 13 CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSK-DAFTGLYKLTELKLRKNHLSELPGKLFIS 91 (404)
Q Consensus 13 ~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 91 (404)
.||..|.|.. +.++|.++.++.+|.. ++..++.|++++|.++.+.+ ..|.++++|+.|++++|+++.+++..|..
T Consensus 4 ~CP~~C~C~~--~~l~~s~n~l~~iP~~--~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~ 79 (220)
T 2v70_A 4 ACPEKCRCEG--TTVDCSNQKLNKIPEH--IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG 79 (220)
T ss_dssp CCCTTCEEET--TEEECCSSCCSSCCSC--CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CCCCCCEECC--CEeEeCCCCcccCccC--CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC
Confidence 6899999985 5899999999999976 67788999999999988843 55788888999999998888888878888
Q ss_pred CCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEe
Q psy12291 92 TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLK 171 (404)
Q Consensus 92 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~ 171 (404)
+++|++|++++|.++.+++..|.++++|++|++++|.++.+++..|..+++|+.|++++|.+..+.+..|..+++|+.|+
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 88888888888888888887788888888888888888877777777777777777777777777666677777777777
Q ss_pred ccCCCCC
Q psy12291 172 LQSNRIN 178 (404)
Q Consensus 172 l~~~~l~ 178 (404)
+++|.+.
T Consensus 160 L~~N~l~ 166 (220)
T 2v70_A 160 LLANPFN 166 (220)
T ss_dssp CCSCCEE
T ss_pred ecCcCCc
Confidence 7776554
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=4.1e-23 Score=185.63 Aligned_cols=135 Identities=16% Similarity=0.029 Sum_probs=61.6
Q ss_pred CCcEEEccCCCCCcCCCccC--CCCCCCCEEECCCCccccccc----ccccCCccCcEEeccCCCCCCCCCCccCCCCCC
Q psy12291 118 RLTVVQLSYNAIESLPANVF--HDLISLEELDLSQNVLTSIQY----GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYL 191 (404)
Q Consensus 118 ~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L 191 (404)
+|++|++++|.+....+..+ ..+++|++|++++|.+....+ ..+..+++|++|++++|.+..+++..|..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34444444444443333222 344444444444444443211 122345566666666666665555555556666
Q ss_pred CeEecCCCcCcc---cC-CCccCCCCCCCEEECCCCcCCCCChh---hhcCCCCCcEEECCCCCCccc
Q psy12291 192 DFLSLRNNRLSF---IR-PGLFNYFKHLTFLELSENWISSLNGD---EFSQLTSLKELHLGQNYIETI 252 (404)
Q Consensus 192 ~~L~l~~~~~~~---~~-~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~l~~~ 252 (404)
++|++++|++.. +. ...+..+++|++|++++|.++.++.. .+..+++|++|++++|.+...
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 666666665432 11 11123444455555555544433211 123444555555555554444
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=4e-23 Score=185.69 Aligned_cols=224 Identities=19% Similarity=0.078 Sum_probs=178.4
Q ss_pred CCcEEEccCCCCCcCCC---ccCCCCCCCCEEECCCCcccccccccc--cCCccCcEEeccCCCCCCCCC----CccCCC
Q psy12291 118 RLTVVQLSYNAIESLPA---NVFHDLISLEELDLSQNVLTSIQYGTF--SGMYSLKRLKLQSNRINQLPP----GIFDDL 188 (404)
Q Consensus 118 ~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~~~l~~~~~~~l--~~l~~L~~L~l~~~~l~~~~~----~~~~~l 188 (404)
.++.+.+.++.+..... ..+..+++|++|++++|.+....+..+ ..+++|++|++++|.++...+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 45556665555432100 001234679999999999998877777 889999999999999986433 234568
Q ss_pred CCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCC---C-hhhhcCCCCCcEEECCCCCCcccCcc---cccCCC
Q psy12291 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSL---N-GDEFSQLTSLKELHLGQNYIETIPAG---SFANLQ 261 (404)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~-~~~~~~l~~L~~L~l~~~~l~~~~~~---~~~~l~ 261 (404)
++|++|++++|.+..+.+..+..+++|++|++++|.+... + ...+..+++|++|++++|.++.++.. .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 9999999999999999888999999999999999987642 1 12346789999999999999866542 356789
Q ss_pred CCcEEECcCCCccccccccccCC---CCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEE
Q psy12291 262 SLEKLFLYSNNIQELHAGTFAGL---TNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITL 338 (404)
Q Consensus 262 ~L~~L~L~~n~l~~~~~~~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 338 (404)
+|++|++++|.++.+.+..+..+ ++|++|++++|+++.++...+ ++|++|++++|++++++. +..+++|+.|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L 299 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAPQ--PDELPEVDNL 299 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCCC--TTSCCCCSCE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCch--hhhCCCccEE
Confidence 99999999999999865555555 799999999999998865443 799999999999999854 6788999999
Q ss_pred EccCCccc
Q psy12291 339 KLAKNPWH 346 (404)
Q Consensus 339 ~l~~Np~~ 346 (404)
++++|++.
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 99999984
No 99
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.89 E-value=1.6e-21 Score=180.43 Aligned_cols=265 Identities=16% Similarity=0.266 Sum_probs=217.3
Q ss_pred CCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEE
Q psy12291 67 GLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEEL 146 (404)
Q Consensus 67 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 146 (404)
.+..++.+.+.+ .++.|+..+|.++ +|+.+.+..+ ++.++..+|.++ +|+.+.+.. .++.+...+|.++++|+.+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 346777777765 4778888888875 6888888766 788888888774 688888876 6778888888888888888
Q ss_pred ECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCC
Q psy12291 147 DLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226 (404)
Q Consensus 147 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 226 (404)
++..|.+..+...+|. ..+|+.+.+..+ +..++..+|..+++|+.+.+..+ ++.+....|.+ .+|+.+.+. +.+.
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 8888888888888887 578888888744 78888888888888888888764 66677777777 788888884 4567
Q ss_pred CCChhhhcCCCCCcEEECCCCCCc-----ccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccC
Q psy12291 227 SLNGDEFSQLTSLKELHLGQNYIE-----TIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLD 301 (404)
Q Consensus 227 ~~~~~~~~~l~~L~~L~l~~~~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 301 (404)
.+...+|.++++|+.+.+.++.+. .++...|..+++|+.+.+. +.++.+...+|.++++|+.+.|.. .++.++
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPA-NVTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECT-TCCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECc-cccEEc
Confidence 777788889999999998887665 6888889999999999998 568999999999999999999955 488999
Q ss_pred ccccCCCCCCcEEeCCCCCCcccCcccccCCC-CCcEEEccCCc
Q psy12291 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLSLLP-NLITLKLAKNP 344 (404)
Q Consensus 302 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~l~l~~Np 344 (404)
..+|..+ +|+.+++.+|.+..+....+..++ +++.|++-.+.
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 9999999 999999999999999888888885 78899887654
No 100
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.88 E-value=2.6e-21 Score=179.04 Aligned_cols=266 Identities=16% Similarity=0.247 Sum_probs=228.7
Q ss_pred CCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEc
Q psy12291 45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL 124 (404)
Q Consensus 45 ~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 124 (404)
..++.+.+.. .++.+...+|.+. +|+.+.+..+ +..++..+|.++ +|+.+.+.. .++.++..+|.++.+|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 3455666654 5778888889886 7999999876 889999999885 699999986 788999899999999999999
Q ss_pred cCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCccc
Q psy12291 125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204 (404)
Q Consensus 125 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 204 (404)
..|.++.++...|. ..+|+.+.+.. .+..+...+|.++++|+.+.+..+ ++.+...+|.. .+|+.+.+ .+.++.+
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEE
Confidence 99999999999887 58999999985 488888899999999999999874 78888888988 78999999 4567788
Q ss_pred CCCccCCCCCCCEEECCCCcCC-----CCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccc
Q psy12291 205 RPGLFNYFKHLTFLELSENWIS-----SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAG 279 (404)
Q Consensus 205 ~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 279 (404)
....|..+++|+.+.+.++.+. .++..+|.++++|+.+.+. +.+..++...|..+++|+.+.+.. .++.+...
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPA-NVTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECT-TCCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECc-cccEEcHH
Confidence 8889999999999999887665 5777889999999999999 458999998999999999999955 48899999
Q ss_pred cccCCCCCCeeecccccccccCccccCCCC-CCcEEeCCCCCCcc
Q psy12291 280 TFAGLTNLTALFLNNNLLRYLDTKAFEPML-HLKKLQLDSNKLQY 323 (404)
Q Consensus 280 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~ 323 (404)
+|.++ +|+.+++++|.+..+....|..++ +++.|.+..+.+..
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHH
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHHH
Confidence 99999 999999999999999888898884 78889887766443
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=1.1e-22 Score=195.53 Aligned_cols=178 Identities=26% Similarity=0.394 Sum_probs=109.8
Q ss_pred CCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEecc
Q psy12291 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQ 173 (404)
Q Consensus 94 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 173 (404)
+|++|++++|.++.+|... +++|++|++++|.++.++ ..+++|+.|++++|.+..++. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECC
Confidence 7888888888888887754 367888888888888777 235678888888887777554 443 77777777
Q ss_pred CCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccC
Q psy12291 174 SNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIP 253 (404)
Q Consensus 174 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 253 (404)
+|.++.++. .+++|+.|++++|.++.++. .+++|++|++++|.++.++. +. ++|+.|++++|.++.+|
T Consensus 129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 129 NNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp SSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCC
T ss_pred CCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchh
Confidence 777777665 35667777777777665433 34566666666666665543 33 55666666666655555
Q ss_pred cccccCCCCC-------cEEECcCCCccccccccccCCCCCCeeecccccccc
Q psy12291 254 AGSFANLQSL-------EKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRY 299 (404)
Q Consensus 254 ~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~ 299 (404)
. +.. +| +.|+|++|.|+.++...+ .+++|++|+|++|.++.
T Consensus 197 ~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~-~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 197 A--VPV--RNHHSEETEIFFRCRENRITHIPENIL-SLDPTCTIILEDNPLSS 244 (571)
T ss_dssp C--CC----------CCEEEECCSSCCCCCCGGGG-GSCTTEEEECCSSSCCH
T ss_pred h--HHH--hhhcccccceEEecCCCcceecCHHHh-cCCCCCEEEeeCCcCCC
Confidence 4 221 33 455555555544433222 24444444444444443
No 102
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=1.9e-23 Score=189.33 Aligned_cols=284 Identities=15% Similarity=0.102 Sum_probs=199.5
Q ss_pred CeeEEEcCCCCCcccChhhcCC-CCCCCEEEccCCcCc--ccCcccccCCCCCCEEeCCCCCCcccCccccCC-------
Q psy12291 46 DIRVIDLGINQLSTLSKDAFTG-LYKLTELKLRKNHLS--ELPGKLFISTINLSTMDLSQNLIKTLPSTFFKG------- 115 (404)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~~~-~~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------- 115 (404)
+++.|.++++ +.......+.. +++|+.|+|++|++. ......+ +.++.+.+..+ .++..+|.+
T Consensus 26 ~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~---~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 26 SITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN---FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT---EECTTTTEEEETTEEE
T ss_pred ceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccc---ccCHHHhccccccccc
Confidence 5777877753 22222223333 677888888888887 4433332 22444444444 566677777
Q ss_pred -CCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCC----CCCCCCCCccCCCCC
Q psy12291 116 -AIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN----RINQLPPGIFDDLKY 190 (404)
Q Consensus 116 -~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~----~l~~~~~~~~~~l~~ 190 (404)
+++|+.+++.. .++.++..+|.++++|+.|++++|.+..+...+|.++.++..+..... ....+....|..+..
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 88888888888 788888888888888888888888888888888887776666665552 233445555655666
Q ss_pred CC-eEecCCCcC-cccCCCccCCCCCCCEEECCCCcCCCCChhhh-cCCCCCcEEECCCCCCcccCcccccCCCCCcEEE
Q psy12291 191 LD-FLSLRNNRL-SFIRPGLFNYFKHLTFLELSENWISSLNGDEF-SQLTSLKELHLGQNYIETIPAGSFANLQSLEKLF 267 (404)
Q Consensus 191 L~-~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 267 (404)
|+ .+.+..... .......-....++..+.+.+.- .......+ ..+++|+.+++++|.+..++...|..+++|+.++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 65 344432211 00000001123455666665542 11111122 2378999999999999999999999999999999
Q ss_pred CcCCCccccccccccCCCCCC-eeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEc
Q psy12291 268 LYSNNIQELHAGTFAGLTNLT-ALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKL 340 (404)
Q Consensus 268 L~~n~l~~~~~~~~~~~~~L~-~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 340 (404)
+.+| ++.++..+|.++++|+ .+++.+ .++.++..+|..+++|+.+++++|.++.++.+.|..+++|+.++.
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9987 9999999999999999 999988 899999999999999999999999999999999999999998864
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=4.1e-21 Score=162.17 Aligned_cols=171 Identities=33% Similarity=0.552 Sum_probs=137.2
Q ss_pred CeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCC
Q psy12291 192 DFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271 (404)
Q Consensus 192 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n 271 (404)
+.++.+++.++.++.. ..+++++|++++|.+..+++..+..+++|++|++++|.+..++...+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 3445555555444322 2346777777777777776666777888888888888888887777788888999999988
Q ss_pred CccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccC-
Q psy12291 272 NIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA- 350 (404)
Q Consensus 272 ~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~- 350 (404)
.++.++...|..+++|++|++++|+++.+++..+..+++|+.|++++|+++++++..+..+++|+.|++++|+|.|+|+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 166 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 166 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCC
Confidence 8888888778889999999999999998888888899999999999999999988888999999999999999999997
Q ss_pred cHHHHHHHHhccCcc
Q psy12291 351 ILYMARWLRANRRKV 365 (404)
Q Consensus 351 ~~~~~~~~~~~~~~~ 365 (404)
+.++..|.......+
T Consensus 167 l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 167 IRYLSEWINKHSGVV 181 (208)
T ss_dssp THHHHHHHHHCTTTB
T ss_pred HHHHHHHHHhCCcee
Confidence 677777877655444
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2.2e-23 Score=189.73 Aligned_cols=254 Identities=16% Similarity=0.145 Sum_probs=127.2
Q ss_pred CeeEEEcCCCCCcccChhhcCCC--CCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCccc-CccccCCCCCCcEE
Q psy12291 46 DIRVIDLGINQLSTLSKDAFTGL--YKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTL-PSTFFKGAIRLTVV 122 (404)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L 122 (404)
..++++++++.+. +..+..+ ++++.|++++|.+.+..... ..+++|++|++++|.++.. .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3566666666554 2334444 56677777776666555443 3566677777766665532 22235566666666
Q ss_pred EccCCCCCcCCCccCCCCCCCCEEECCCC-ccccc-ccccccCCccCcEEeccCC-CCCCC-CCCccCCCC-CCCeEecC
Q psy12291 123 QLSYNAIESLPANVFHDLISLEELDLSQN-VLTSI-QYGTFSGMYSLKRLKLQSN-RINQL-PPGIFDDLK-YLDFLSLR 197 (404)
Q Consensus 123 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~l~~l~~L~~L~l~~~-~l~~~-~~~~~~~l~-~L~~L~l~ 197 (404)
++++|.++......+..+++|++|++++| .+... .+..+.++++|++|++++| .++.. .+..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 66666655333333445566666666666 34431 1122444555555655555 44431 111223344 44444444
Q ss_pred CCcCcccCCCccCCCCCCCEEECCCCcCC-CCChhhhcCCCCCcEEECCCCC-CcccCcccccCCCCCcEEECcCCC-cc
Q psy12291 198 NNRLSFIRPGLFNYFKHLTFLELSENWIS-SLNGDEFSQLTSLKELHLGQNY-IETIPAGSFANLQSLEKLFLYSNN-IQ 274 (404)
Q Consensus 198 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~L~~n~-l~ 274 (404)
+|.+ .++ ...+..+..+++|++|++++|. ++......+..+++|+.|++++|. +.
T Consensus 204 ~~~~----------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 204 GYRK----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp SCGG----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred CCcc----------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 4421 222 1111233445556666666555 333222244555666666666653 22
Q ss_pred ccccccccCCCCCCeeecccccccccCccccCCC-CCCcEEeCCCCCCcccCcccc
Q psy12291 275 ELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPM-LHLKKLQLDSNKLQYLATDSL 329 (404)
Q Consensus 275 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~ 329 (404)
......+..+++|++|++++| ++ .+.+..+ ..++.|++++|+++++.+..+
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred HHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCcc
Confidence 222224555666666666666 22 2222222 234555566666666555433
No 105
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.9e-23 Score=190.16 Aligned_cols=244 Identities=17% Similarity=0.150 Sum_probs=161.4
Q ss_pred CCEEeCCCCCCcccCccccCCC--CCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCccccc-ccccccCCccCcEEe
Q psy12291 95 LSTMDLSQNLIKTLPSTFFKGA--IRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI-QYGTFSGMYSLKRLK 171 (404)
Q Consensus 95 L~~L~l~~n~l~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~ 171 (404)
++.++++++.+. +..+..+ ++++.|++++|.+....... ..+++|++|++++|.+... .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 555555555444 1223333 45666666666655544443 3456666777766665543 233455666777777
Q ss_pred ccCCCCCCCCCCccCCCCCCCeEecCCC-cCccc-CCCccCCCCCCCEEECCCC-cCCCC-ChhhhcCCC-CCcEEECCC
Q psy12291 172 LQSNRINQLPPGIFDDLKYLDFLSLRNN-RLSFI-RPGLFNYFKHLTFLELSEN-WISSL-NGDEFSQLT-SLKELHLGQ 246 (404)
Q Consensus 172 l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~l~~ 246 (404)
+++|.++...+..+..+++|++|++++| .++.. .+..+..+++|++|++++| .++.. .+..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 7777665444444566777777777777 45531 2334567788899999888 77653 235577889 999999999
Q ss_pred CC--Cc--ccCcccccCCCCCcEEECcCCC-ccccccccccCCCCCCeeeccccc-ccccCccccCCCCCCcEEeCCCCC
Q psy12291 247 NY--IE--TIPAGSFANLQSLEKLFLYSNN-IQELHAGTFAGLTNLTALFLNNNL-LRYLDTKAFEPMLHLKKLQLDSNK 320 (404)
Q Consensus 247 ~~--l~--~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~ 320 (404)
|. +. .++. .+..+++|+.|++++|. +++.....+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 205 ~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 205 YRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp CGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 94 43 3333 56678999999999998 776666678899999999999995 43333346788999999999999
Q ss_pred CcccCcccccCC-CCCcEEEccCCcccc
Q psy12291 321 LQYLATDSLSLL-PNLITLKLAKNPWHC 347 (404)
Q Consensus 321 l~~~~~~~~~~l-~~L~~l~l~~Np~~C 347 (404)
+ +...+..+ .++..|++++|.+..
T Consensus 283 i---~~~~~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 283 V---PDGTLQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp S---CTTCHHHHHHHSTTSEESCCCSCC
T ss_pred c---CHHHHHHHHhhCcceEEecccCcc
Confidence 3 33333333 235566688887743
No 106
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=8e-24 Score=196.34 Aligned_cols=254 Identities=20% Similarity=0.183 Sum_probs=155.8
Q ss_pred ccCCCCCCEEeCCCCCCcccCc----cccCCCCCCcEEEccCCCCCcCCCc----c------CCCCCCCCEEECCCCccc
Q psy12291 89 FISTINLSTMDLSQNLIKTLPS----TFFKGAIRLTVVQLSYNAIESLPAN----V------FHDLISLEELDLSQNVLT 154 (404)
Q Consensus 89 ~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~----~------~~~l~~L~~L~l~~~~l~ 154 (404)
+..+++|++|++++|.++.... ..+..+++|++|++++|.+..+... . +..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3566778888888887765322 1255677777777777655433211 1 234455555555555554
Q ss_pred cc----ccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCC---------CCCCEEECC
Q psy12291 155 SI----QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYF---------KHLTFLELS 221 (404)
Q Consensus 155 ~~----~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l---------~~L~~L~l~ 221 (404)
.. .+..+..+++|++|++++|.++......+. ..+..+ ++|++|+++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~--------------------~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--------------------RALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH--------------------HHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH--------------------HHHHHHhhhhhcccCCCCcEEECC
Confidence 41 122334444555555555544322111111 111112 677777777
Q ss_pred CCcCCCCCh----hhhcCCCCCcEEECCCCCCcc-----cCcccccCCCCCcEEECcCCCccc----cccccccCCCCCC
Q psy12291 222 ENWISSLNG----DEFSQLTSLKELHLGQNYIET-----IPAGSFANLQSLEKLFLYSNNIQE----LHAGTFAGLTNLT 288 (404)
Q Consensus 222 ~~~~~~~~~----~~~~~l~~L~~L~l~~~~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~ 288 (404)
+|.+..... ..+..+++|++|++++|.+.. +.+..+..+++|+.|+|++|.++. ..+..+..+++|+
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 777653221 345567788888888887762 222246678888888888888852 2234667788899
Q ss_pred eeecccccccccCc----ccc--CCCCCCcEEeCCCCCCcc-----cCcccccCCCCCcEEEccCCccccccC-cHHHHH
Q psy12291 289 ALFLNNNLLRYLDT----KAF--EPMLHLKKLQLDSNKLQY-----LATDSLSLLPNLITLKLAKNPWHCDCA-ILYMAR 356 (404)
Q Consensus 289 ~L~l~~n~i~~~~~----~~~--~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~l~l~~Np~~C~c~-~~~~~~ 356 (404)
+|+|++|+++.... ..+ ..+++|+.|+|++|.++. ++......+++|+.|++++|++..... ...+..
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~ 327 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHH
T ss_pred EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHH
Confidence 99999998876532 344 337899999999999988 544333668999999999999987665 445555
Q ss_pred HHHhcc
Q psy12291 357 WLRANR 362 (404)
Q Consensus 357 ~~~~~~ 362 (404)
.+...+
T Consensus 328 ~l~~~~ 333 (386)
T 2ca6_A 328 VFSTRG 333 (386)
T ss_dssp HHHHHT
T ss_pred HhhhcC
Confidence 555543
No 107
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.87 E-value=2.3e-21 Score=157.86 Aligned_cols=150 Identities=29% Similarity=0.579 Sum_probs=131.6
Q ss_pred CCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCC
Q psy12291 238 SLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLD 317 (404)
Q Consensus 238 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 317 (404)
+.+.++++++.+..+|... .++|+.|+|++|.|+.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578999999999988643 3789999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCcccCcccccCCCCCcEEEccCCccccccC-cHHHHHHHHhccCccc------CCCCeeCCCCCCCCCcccCCCCcC
Q psy12291 318 SNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVW------DSKPTCRGPGNLGGKSVEDMSFDD 390 (404)
Q Consensus 318 ~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~-~~~~~~~~~~~~~~~~------~~~~~C~~p~~l~~~~l~~~~~~~ 390 (404)
+|+++.+++..+..+++|+.|+|++|||.|+|. +.|+..|+......+. ....+|++| |.++.+++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~C~~~----~~~~~~~~~~~ 162 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCSGT----NTPVRAVTEAS 162 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGEECSSSBCGGGSBBCC-----CCBGGGCCSTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcceeeccccCCcccceeCCC----Cccchhccccc
Confidence 999999999889999999999999999999996 9999999998876653 226889886 67888888777
Q ss_pred CCCc
Q psy12291 391 LCEG 394 (404)
Q Consensus 391 ~C~~ 394 (404)
.|..
T Consensus 163 ~~~~ 166 (170)
T 3g39_A 163 TSPS 166 (170)
T ss_dssp CBGG
T ss_pred cCCC
Confidence 6643
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.87 E-value=7.4e-21 Score=162.93 Aligned_cols=158 Identities=32% Similarity=0.504 Sum_probs=132.4
Q ss_pred CCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCC
Q psy12291 16 GPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINL 95 (404)
Q Consensus 16 ~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L 95 (404)
..|.|. ...++|.++++..+|.. ++.++++|++++|.+..+.+..|.++++|++|++++|++..++...|..+++|
T Consensus 15 ~~~~Cs--~~~v~c~~~~l~~ip~~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 90 (229)
T 3e6j_A 15 SQCSCS--GTTVDCRSKRHASVPAG--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90 (229)
T ss_dssp TTCEEE--TTEEECTTSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCEEe--CCEeEccCCCcCccCCC--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc
Confidence 456665 67899999999999986 77899999999999999988889999999999999999999988888899999
Q ss_pred CEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCC
Q psy12291 96 STMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175 (404)
Q Consensus 96 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~ 175 (404)
++|++++|.++.+++..|..+++|++|++++|.++.++.. +..+++|+.|++++|.+..+....|..+++|+.|++.+|
T Consensus 91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 9999999999988888888888999999998888877654 356777888888777777776666777777777777777
Q ss_pred CCC
Q psy12291 176 RIN 178 (404)
Q Consensus 176 ~l~ 178 (404)
.+.
T Consensus 170 ~~~ 172 (229)
T 3e6j_A 170 PWD 172 (229)
T ss_dssp CBC
T ss_pred Ccc
Confidence 654
No 109
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.86 E-value=1.5e-20 Score=154.40 Aligned_cols=164 Identities=35% Similarity=0.602 Sum_probs=137.2
Q ss_pred CCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeeccc
Q psy12291 215 LTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN 294 (404)
Q Consensus 215 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 294 (404)
.+.++++++.+..++.. ..++|++|++++|.+..++...+..+++|+.|++++|.++.++...|..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 45677777777766532 235788888888888888877778889999999999999988888888999999999999
Q ss_pred ccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccC-cHHHHHHHHhccCcccCCCCeeC
Q psy12291 295 NLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCR 373 (404)
Q Consensus 295 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~-~~~~~~~~~~~~~~~~~~~~~C~ 373 (404)
|+++.+++..+..+++|++|++++|+++.++...+..+++|+.|++++|+|.|+|+ +.++..|+....... .....|+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~~~~-~~~~~C~ 164 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE-QGSAKCS 164 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTGGGE-ESCCBBT
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHHHhhCcccc-ccCcEeC
Confidence 99999988888899999999999999999998888899999999999999999998 788999998775533 3578898
Q ss_pred CCCCCCCCcccCC
Q psy12291 374 GPGNLGGKSVEDM 386 (404)
Q Consensus 374 ~p~~l~~~~l~~~ 386 (404)
.+ |+++.++
T Consensus 165 ~~----~~~~~~i 173 (177)
T 2o6r_A 165 GS----GKPVRSI 173 (177)
T ss_dssp TT----CCBGGGC
T ss_pred CC----Cccccee
Confidence 74 5566655
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=3.9e-23 Score=191.72 Aligned_cols=243 Identities=20% Similarity=0.191 Sum_probs=139.4
Q ss_pred hhcCCCCCCCEEEccCCcCcccCcc----cccCCCCCCEEeCCCCCCccc----Cccc------cCCCCCCcEEEccCCC
Q psy12291 63 DAFTGLYKLTELKLRKNHLSELPGK----LFISTINLSTMDLSQNLIKTL----PSTF------FKGAIRLTVVQLSYNA 128 (404)
Q Consensus 63 ~~~~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~l~~n~l~~~----~~~~------~~~~~~L~~L~l~~n~ 128 (404)
..+..+++|++|++++|.+...... .|..+++|++|++++|.+..+ |... +..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 3456678889999998888754332 256788899999988765533 3221 4678899999999998
Q ss_pred CCcC----CCccCCCCCCCCEEECCCCcccccccccccC----C---------ccCcEEeccCCCCCCCCC----CccCC
Q psy12291 129 IESL----PANVFHDLISLEELDLSQNVLTSIQYGTFSG----M---------YSLKRLKLQSNRINQLPP----GIFDD 187 (404)
Q Consensus 129 l~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~----l---------~~L~~L~l~~~~l~~~~~----~~~~~ 187 (404)
++.. .+..+..+++|++|++++|.+.......+.. + ++|++|++++|.++.... ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 8762 1224567789999999999886544333332 2 677777777776652111 12334
Q ss_pred CCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCc-----ccCcccccCCCC
Q psy12291 188 LKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE-----TIPAGSFANLQS 262 (404)
Q Consensus 188 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-----~~~~~~~~~l~~ 262 (404)
+++|++|++++|.++..... ...+..+..+++|+.|++++|.++ .++. .+..+++
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~-------------------~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~ 245 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIE-------------------HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPN 245 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHH-------------------HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTT
T ss_pred CCCcCEEECcCCCCCHhHHH-------------------HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCC
Confidence 45555555555554411000 011113344455555555555542 2222 3445555
Q ss_pred CcEEECcCCCcccccc----ccc--cCCCCCCeeecccccccc-----cCccccCCCCCCcEEeCCCCCCcccC
Q psy12291 263 LEKLFLYSNNIQELHA----GTF--AGLTNLTALFLNNNLLRY-----LDTKAFEPMLHLKKLQLDSNKLQYLA 325 (404)
Q Consensus 263 L~~L~L~~n~l~~~~~----~~~--~~~~~L~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~ 325 (404)
|+.|+|++|.++.... ..+ ..+++|++|+|++|.++. ++...+..+++|+.|++++|+++...
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 5666666555554311 222 225666666666666655 32222244566677777777666554
No 111
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=6.6e-22 Score=179.23 Aligned_cols=262 Identities=18% Similarity=0.225 Sum_probs=199.7
Q ss_pred CCCeeEEEcCCCCCc--ccChhhcCCCCCCCEEEccCCcCcccCcccccC--------CCCCCEEeCCCCCCcccCcccc
Q psy12291 44 PVDIRVIDLGINQLS--TLSKDAFTGLYKLTELKLRKNHLSELPGKLFIS--------TINLSTMDLSQNLIKTLPSTFF 113 (404)
Q Consensus 44 ~~~l~~L~l~~~~i~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~--------~~~L~~L~l~~n~l~~~~~~~~ 113 (404)
..+++.||+++|++. ......+ +.++.+.+..+ .++..+|.+ +++|+.|++.+ .++.|+..+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccc---ccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 457999999999988 3332222 23445555554 678888988 99999999999 8999999999
Q ss_pred CCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCC----cccccccccccCCccCc-EEeccCCCCCCCCCCcc---
Q psy12291 114 KGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN----VLTSIQYGTFSGMYSLK-RLKLQSNRINQLPPGIF--- 185 (404)
Q Consensus 114 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~----~l~~~~~~~l~~l~~L~-~L~l~~~~l~~~~~~~~--- 185 (404)
.++++|+.+++++|.+..++..+|.++.++..+..... ....+...+|.++..|+ .+.+.... .++...+
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~--~l~~~~~~~~ 198 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG--KLEDEIMKAG 198 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC--CHHHHHHHTT
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC--cHHHHHhhcc
Confidence 99999999999999999999999998877777776653 23345556677777777 45444321 1111111
Q ss_pred CCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCc-
Q psy12291 186 DDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLE- 264 (404)
Q Consensus 186 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~- 264 (404)
....++..+.+.+.-...........+++|+.+++++|.+..++..+|.++.+|+.+++.++ +..++...|..+++|+
T Consensus 199 ~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 199 LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccE
Confidence 12455666666544211110111123689999999999999999999999999999999997 8899999999999999
Q ss_pred EEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeC
Q psy12291 265 KLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQL 316 (404)
Q Consensus 265 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 316 (404)
.+++.+ .++.++..+|.++++|+.+++++|+++.++..+|.++++|+.++.
T Consensus 278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999988 899999999999999999999999999999999999999998864
No 112
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.85 E-value=1.8e-20 Score=153.07 Aligned_cols=149 Identities=26% Similarity=0.544 Sum_probs=128.9
Q ss_pred CcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCC
Q psy12291 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDS 318 (404)
Q Consensus 239 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 318 (404)
-+.++++++.+..+|... .++|+.|+|++|.++.+++..|.++++|++|+|++|+++.++...|..+++|+.|+|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 468899999999888743 27899999999999999888999999999999999999999888899999999999999
Q ss_pred CCCcccCcccccCCCCCcEEEccCCccccccC-cHHHHHHHHhccCccc---------CCCCeeCCCCCCCCCcccCCCC
Q psy12291 319 NKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVW---------DSKPTCRGPGNLGGKSVEDMSF 388 (404)
Q Consensus 319 n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~-~~~~~~~~~~~~~~~~---------~~~~~C~~p~~l~~~~l~~~~~ 388 (404)
|+++.+++..+..+++|+.|+|++|||.|+|. +.|+..|+......+. .....|+++ |.++.+++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~----~~~~~~~~~ 166 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIVMRWDGKAVNDPDSAKCAGT----NTPVRAVTE 166 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECGGGSBBTTT----CCBGGGCCG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhcccccccccccccCCcccCEECCC----Cccceeccc
Confidence 99999999889999999999999999999996 8899999988765442 225778875 677888877
Q ss_pred cCCCCc
Q psy12291 389 DDLCEG 394 (404)
Q Consensus 389 ~~~C~~ 394 (404)
...|+.
T Consensus 167 ~~~~p~ 172 (174)
T 2r9u_A 167 ASTSPS 172 (174)
T ss_dssp GGCBTT
T ss_pred cccCcC
Confidence 666643
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=2.2e-20 Score=165.97 Aligned_cols=188 Identities=26% Similarity=0.307 Sum_probs=104.2
Q ss_pred EEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcc
Q psy12291 74 LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL 153 (404)
Q Consensus 74 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 153 (404)
+.+....+.++.. +..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|+.|++++|.+
T Consensus 29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCcccccc--hhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 3444444444322 2345667777777776666653 5566666666666666666554 45566666666666665
Q ss_pred cccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhh
Q psy12291 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEF 233 (404)
Q Consensus 154 ~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 233 (404)
..+. .+..+++|++|++++|.++.++ .+..+++|+.|++++|.+..+ ..+
T Consensus 103 ~~~~--~l~~l~~L~~L~L~~n~i~~~~--------------------------~l~~l~~L~~L~l~~n~l~~~--~~l 152 (291)
T 1h6t_A 103 KDLS--SLKDLKKLKSLSLEHNGISDIN--------------------------GLVHLPQLESLYLGNNKITDI--TVL 152 (291)
T ss_dssp CCGG--GGTTCTTCCEEECTTSCCCCCG--------------------------GGGGCTTCCEEECCSSCCCCC--GGG
T ss_pred CCCh--hhccCCCCCEEECCCCcCCCCh--------------------------hhcCCCCCCEEEccCCcCCcc--hhh
Confidence 5543 2455555555555555554432 233344444444444444444 234
Q ss_pred cCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccC
Q psy12291 234 SQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLD 301 (404)
Q Consensus 234 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 301 (404)
..+++|++|++++|.+..+++ +..+++|+.|++++|.+++++. +..+++|+.|++++|+++..+
T Consensus 153 ~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 153 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCC
T ss_pred ccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCcccCCc
Confidence 555556666666665555543 5555666666666666665532 555666666666666655543
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=8.6e-20 Score=175.46 Aligned_cols=186 Identities=26% Similarity=0.378 Sum_probs=147.0
Q ss_pred CCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECC
Q psy12291 70 KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS 149 (404)
Q Consensus 70 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 149 (404)
+|+.|++++|+++++|...+ ++|++|++++|.++.+| ..+++|++|++++|.++.++. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECC
Confidence 78888888888888877553 67888888888888877 246788888888888888776 443 88888888
Q ss_pred CCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCC
Q psy12291 150 QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229 (404)
Q Consensus 150 ~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 229 (404)
+|.+..++. .+++|+.|++++|.++.++. .+++|++|++++|.++.++. +. ++|+.|++++|.++.++
T Consensus 129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 129 NNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp SSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCC
T ss_pred CCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchh
Confidence 888887664 56788888988888888775 46788899999988888654 44 88999999999888776
Q ss_pred hhhhcCCCCC-------cEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccC
Q psy12291 230 GDEFSQLTSL-------KELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAG 283 (404)
Q Consensus 230 ~~~~~~l~~L-------~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 283 (404)
. +.. +| +.|++++|.++.+|.. +..+++|+.|+|++|.++...+..+..
T Consensus 197 ~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 197 A--VPV--RNHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp C--CC----------CCEEEECCSSCCCCCCGG-GGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred h--HHH--hhhcccccceEEecCCCcceecCHH-HhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 5 443 66 9999999999999875 445999999999999998876655543
No 115
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=1.8e-20 Score=166.58 Aligned_cols=190 Identities=23% Similarity=0.295 Sum_probs=143.3
Q ss_pred eeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccC
Q psy12291 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSY 126 (404)
Q Consensus 47 l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 126 (404)
+..+.+..+.+..+. .+..+++|+.|++++|.+..++. +..+++|++|++++|.++.+++ +..+++|++|++++
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 334455666665542 34567899999999999998865 6789999999999999999887 88999999999999
Q ss_pred CCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCC
Q psy12291 127 NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRP 206 (404)
Q Consensus 127 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 206 (404)
|.++.++. +..+++|+.|++++|.+..+ ..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.++.+.+
T Consensus 100 n~l~~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 100 NKVKDLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp SCCCCGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CcCCCChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 99998765 78899999999999999886 3577889999999999988876 345667777777777777665543
Q ss_pred CccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCccc
Q psy12291 207 GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252 (404)
Q Consensus 207 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 252 (404)
+..+++|+.|++++|.+..++ .+..+++|+.|++++|.+...
T Consensus 174 --l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECC
T ss_pred --hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCC
Confidence 555666666666666555543 245555555555555554443
No 116
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.84 E-value=6.7e-20 Score=152.43 Aligned_cols=137 Identities=28% Similarity=0.483 Sum_probs=125.5
Q ss_pred CCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCC
Q psy12291 13 CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIST 92 (404)
Q Consensus 13 ~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 92 (404)
.||..|.|.. ..++|.+++++.+|.. ++.++++|++++|.++.++ ..|.++++|+.|++++|.++.++...|..+
T Consensus 3 ~CP~~C~C~~--~~l~~~~~~l~~ip~~--~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l 77 (193)
T 2wfh_A 3 RCPTECTCLD--TVVRCSNKGLKVLPKG--IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNM 77 (193)
T ss_dssp -CCTTCEEET--TEEECTTSCCSSCCSC--CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCCCEeCC--CEEEcCCCCCCcCCCC--CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCC
Confidence 5899999974 6899999999999976 6789999999999999886 679999999999999999999999999999
Q ss_pred CCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCccc
Q psy12291 93 INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLT 154 (404)
Q Consensus 93 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 154 (404)
++|++|++++|.++.+++..|.++++|++|++++|.++.++...|..+++|+.|++++|++.
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 99999999999999999888999999999999999999999888888999999999998775
No 117
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.83 E-value=1.5e-19 Score=148.51 Aligned_cols=138 Identities=28% Similarity=0.527 Sum_probs=125.3
Q ss_pred CCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCC
Q psy12291 14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTI 93 (404)
Q Consensus 14 ~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 93 (404)
||..|.|. .+.++|.+++++.+|.. .+.++++|++++|.++.+.+..|.++++|++|++++|+++.++...|..++
T Consensus 1 Cp~~C~C~--~~~l~~~~~~l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 76 (177)
T 2o6r_A 1 CPSRCSCS--GTEIRCNSKGLTSVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT 76 (177)
T ss_dssp CCTTCEEE--TTEEECCSSCCSSCCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CcCCCEeC--CCEEEecCCCCccCCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC
Confidence 78999995 68899999999999965 667999999999999999888889999999999999999999988889999
Q ss_pred CCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccc
Q psy12291 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTS 155 (404)
Q Consensus 94 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~ 155 (404)
+|++|++++|.++.+++..|..+++|++|++++|.++.++...|..+++|+.|++++|++..
T Consensus 77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99999999999999998888899999999999999999988888888999999999988754
No 118
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=4.4e-22 Score=195.18 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=66.1
Q ss_pred CCceEEecCCCCCccCCCC---CCCCCeeEEEcCCCC-CcccCh-hhcCCCCCCCEEEccCCcCcccCc----ccccCCC
Q psy12291 23 EIHTLSCWKQDMEELPFDQ---IIPVDIRVIDLGINQ-LSTLSK-DAFTGLYKLTELKLRKNHLSELPG----KLFISTI 93 (404)
Q Consensus 23 ~~~~~~~~~~~l~~ip~~~---~~~~~l~~L~l~~~~-i~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~ 93 (404)
..+.++..++.+....... ..+.++++|+++++. +..... ....++++|++|++++|.+.+... ..+..++
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 192 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC
Confidence 4666777666544221110 022348888887775 211111 112366778888888777654321 1234567
Q ss_pred CCCEEeCCCCCCcccCc----cccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECC
Q psy12291 94 NLSTMDLSQNLIKTLPS----TFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS 149 (404)
Q Consensus 94 ~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 149 (404)
+|++|++++|.++.+.. ..+.++++|+.|++++|.+..++ ..+..+++|+.|+++
T Consensus 193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGG 251 (592)
T ss_dssp CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEEC
T ss_pred CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhccc
Confidence 77777777777653322 22445677777777776655433 122334444444443
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.82 E-value=1.8e-19 Score=149.84 Aligned_cols=138 Identities=29% Similarity=0.512 Sum_probs=122.5
Q ss_pred CCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChh-hcCCCCCCCEEEccCCcCcccCcccccC
Q psy12291 13 CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKD-AFTGLYKLTELKLRKNHLSELPGKLFIS 91 (404)
Q Consensus 13 ~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 91 (404)
.||..|.|.. +.++|.+++++.+|.. ++.++++|++++|.+..+.+. .|.++++|++|++++|+++++.+..|..
T Consensus 1 ~CP~~C~C~~--~~l~~s~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 76 (192)
T 1w8a_A 1 DCPAMCHCEG--TTVDCTGRGLKEIPRD--IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76 (192)
T ss_dssp CCCTTSEEET--TEEECTTSCCSSCCSC--CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred CcCCCCEECC--CEEEcCCCCcCcCccC--CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC
Confidence 4899999975 7899999999999986 666999999999999988764 4889999999999999999998888899
Q ss_pred CCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCccc
Q psy12291 92 TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLT 154 (404)
Q Consensus 92 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~ 154 (404)
+++|++|++++|.++.+++..|.++++|++|++++|.++.+.+..|..+++|+.|++++|++.
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999999999999999988888888999999999999998887777888888999999888775
No 120
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=8.7e-20 Score=177.30 Aligned_cols=199 Identities=23% Similarity=0.289 Sum_probs=154.4
Q ss_pred CCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECC
Q psy12291 70 KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS 149 (404)
Q Consensus 70 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 149 (404)
.+..+.+..+.+..+.. +..+++|+.|++++|.+..++. +..+++|+.|+|++|.+..+++ +..+++|+.|+++
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 44555666666666544 3567889999999999988874 7789999999999999888776 6788899999999
Q ss_pred CCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCC
Q psy12291 150 QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229 (404)
Q Consensus 150 ~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 229 (404)
+|.+..++ .+..+++|+.|++++|.+..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|+|++|.+..++
T Consensus 96 ~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 96 ENKIKDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SSCCCCCT--TSTTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCCCh--hhccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 99888764 5778888899999888888764 367788888888888888776 45777888888888888887776
Q ss_pred hhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCC
Q psy12291 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGL 284 (404)
Q Consensus 230 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 284 (404)
+ +..+++|+.|++++|.+..++ .+..+++|+.|+|++|.+...+...+..+
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred h--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCcccccccE
Confidence 4 777888888888888887764 36778888888888887776655444333
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=1e-19 Score=176.84 Aligned_cols=195 Identities=24% Similarity=0.298 Sum_probs=169.0
Q ss_pred eeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccC
Q psy12291 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSY 126 (404)
Q Consensus 47 l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 126 (404)
+..+.+..+.+..+. .+..+++|+.|++++|.+..++. |..+++|+.|+|++|.+..+++ +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 455666777766553 24677899999999999999874 6889999999999999999887 88999999999999
Q ss_pred CCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCC
Q psy12291 127 NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRP 206 (404)
Q Consensus 127 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 206 (404)
|.+..++. +..+++|+.|++++|.+..+. .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+..+.+
T Consensus 97 N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKDLSS--LKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCCCTT--STTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCChh--hccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 99998774 788999999999999998864 588899999999999999987 457899999999999999998766
Q ss_pred CccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccc
Q psy12291 207 GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSF 257 (404)
Q Consensus 207 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 257 (404)
+..+++|+.|+|++|.+..++ .+..+++|+.|++++|.+...+...+
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQ 217 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCCC
T ss_pred --hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCccccc
Confidence 889999999999999998874 68899999999999999887765433
No 122
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.82 E-value=2e-18 Score=160.22 Aligned_cols=276 Identities=21% Similarity=0.334 Sum_probs=174.2
Q ss_pred CcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCC---------
Q psy12291 57 LSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN--------- 127 (404)
Q Consensus 57 i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n--------- 127 (404)
++.|...+|.++.+|+.+.+.. .++.|+..+|.++++|+.+++..+ ++.++..+|.++.+|+.+.+..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF 136 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF 136 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence 4555555666666666666653 355666666666666666666433 55555555555555555444322
Q ss_pred ------------CCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEe
Q psy12291 128 ------------AIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLS 195 (404)
Q Consensus 128 ------------~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 195 (404)
....+...+|.++.+|+.+.+..+ +..+...+|.++.+|+.+.+..+ +..+...+|..+..|+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred ecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 122344455666667777776543 34555666666677777766554 5555566666666666555
Q ss_pred cCCCcC---------------------cccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCc
Q psy12291 196 LRNNRL---------------------SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA 254 (404)
Q Consensus 196 l~~~~~---------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 254 (404)
+..+.. +.+....+..+..++.+.+..+. ..+...+|..+..++.+..... .++.
T Consensus 215 ~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~---~i~~ 290 (394)
T 4fs7_A 215 FPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSV---IVPE 290 (394)
T ss_dssp CCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSS---EECT
T ss_pred cCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCce---eecc
Confidence 543321 12222334444455555544432 2233344455555555544433 2444
Q ss_pred ccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCC
Q psy12291 255 GSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPN 334 (404)
Q Consensus 255 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 334 (404)
..|..+.+|+.+.+.++ ++.++..+|.++.+|+.+++.+ .++.++..+|.++.+|+.+++..+ ++.++..+|..+.+
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 56777888999988654 8888888999999999999974 488899999999999999999876 88999999999999
Q ss_pred CcEEEccCC
Q psy12291 335 LITLKLAKN 343 (404)
Q Consensus 335 L~~l~l~~N 343 (404)
|+.+++..+
T Consensus 368 L~~i~lp~~ 376 (394)
T 4fs7_A 368 LKKVELPKR 376 (394)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEECCC
Confidence 999998653
No 123
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=6.1e-22 Score=194.18 Aligned_cols=298 Identities=15% Similarity=0.106 Sum_probs=154.8
Q ss_pred CCeeEEEcCCCCCcccCh----hhcCCCCCCCEEEccCCcCcccCc----ccccCCCCCCEEeCCCCCCcccCccccCCC
Q psy12291 45 VDIRVIDLGINQLSTLSK----DAFTGLYKLTELKLRKNHLSELPG----KLFISTINLSTMDLSQNLIKTLPSTFFKGA 116 (404)
Q Consensus 45 ~~l~~L~l~~~~i~~~~~----~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 116 (404)
+++++|++++|.+..... ..+.++++|++|++++|.+..+.. ..+..+++|++|++++|.+..++. .+..+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG-FFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH-HHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH-HHhhh
Confidence 478899999987755432 234567888999998888863332 234567889999999888877663 46677
Q ss_pred CCCcEEEccCCCCC-c--CCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCC-CccCCCCCCC
Q psy12291 117 IRLTVVQLSYNAIE-S--LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPP-GIFDDLKYLD 192 (404)
Q Consensus 117 ~~L~~L~l~~n~l~-~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~ 192 (404)
++|+.|+++..... . .....+..+++|+.|+++++....+. ..+..+++|++|++++|.++.... ..+..+++|+
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP-ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGG-GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHH-HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 88888887643211 0 01122345556666666654332222 334455666666666665432211 1134455555
Q ss_pred eEecCCCcCcc-cCCCccCC------------------------------------CCCCCEEECCCCcCCCCChhhhcC
Q psy12291 193 FLSLRNNRLSF-IRPGLFNY------------------------------------FKHLTFLELSENWISSLNGDEFSQ 235 (404)
Q Consensus 193 ~L~l~~~~~~~-~~~~~~~~------------------------------------l~~L~~L~l~~~~~~~~~~~~~~~ 235 (404)
.|++. +.+.. ..+..... +++|++|+++.+.++......+..
T Consensus 322 ~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 322 VLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp EEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred EEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 55554 22111 11111223 444555544444443322222322
Q ss_pred -CCCCcEEECC----CCCCcccCc-----ccccCCCCCcEEECcCCC--ccccccccc-cCCCCCCeeecccccccccCc
Q psy12291 236 -LTSLKELHLG----QNYIETIPA-----GSFANLQSLEKLFLYSNN--IQELHAGTF-AGLTNLTALFLNNNLLRYLDT 302 (404)
Q Consensus 236 -l~~L~~L~l~----~~~l~~~~~-----~~~~~l~~L~~L~L~~n~--l~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~ 302 (404)
+++|++|+++ .+.++..+. ..+..+++|+.|++++|. +++.....+ ..+++|++|++++|+++....
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 4555555553 333433221 113335556666654322 332222222 235666666666666554322
Q ss_pred -cccCCCCCCcEEeCCCCCCcccC-cccccCCCCCcEEEccCCcc
Q psy12291 303 -KAFEPMLHLKKLQLDSNKLQYLA-TDSLSLLPNLITLKLAKNPW 345 (404)
Q Consensus 303 -~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~l~l~~Np~ 345 (404)
..+..+++|++|++++|.++... ......+++|+.|++++|++
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence 23355666666666666654321 12234466666666666664
No 124
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=5.7e-22 Score=194.47 Aligned_cols=298 Identities=14% Similarity=0.077 Sum_probs=169.4
Q ss_pred CCeeEEEcCCCCCcccChhhcC-CCCCCCEEEccCC-cCccc-CcccccCCCCCCEEeCCCCCCcccCcc----ccCCCC
Q psy12291 45 VDIRVIDLGINQLSTLSKDAFT-GLYKLTELKLRKN-HLSEL-PGKLFISTINLSTMDLSQNLIKTLPST----FFKGAI 117 (404)
Q Consensus 45 ~~l~~L~l~~~~i~~~~~~~~~-~~~~L~~L~l~~~-~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~~ 117 (404)
.++++|+++++.++......+. .+++|++|++++| .+... ....+..+++|++|++++|.++..... ....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4677888887777655444454 5677777777777 44431 112224577777777777765543322 123556
Q ss_pred CCcEEEccCCCCCcCCCcc----CCCCCCCCEEECCCCc--------------cc-------------------------
Q psy12291 118 RLTVVQLSYNAIESLPANV----FHDLISLEELDLSQNV--------------LT------------------------- 154 (404)
Q Consensus 118 ~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~~~--------------l~------------------------- 154 (404)
+|++|+++++. ..+.... ...+++|+.|++++|. +.
T Consensus 185 ~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 185 SLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred cCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 77777777665 2222111 1224566666666541 00
Q ss_pred -----------ccccccc----cCCccCcEEeccCCCCCCCC-CCccCCCCCCCeEecCCCcCccc-CCCccCC------
Q psy12291 155 -----------SIQYGTF----SGMYSLKRLKLQSNRINQLP-PGIFDDLKYLDFLSLRNNRLSFI-RPGLFNY------ 211 (404)
Q Consensus 155 -----------~~~~~~l----~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~------ 211 (404)
......+ ..+++|++|++++|.++... ...+..+++|+.|++.++ +... .......
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred CCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCE
Confidence 0011111 13567888888887755321 112345666777776655 2210 0011112
Q ss_pred ----------------------------CCCCCEEECCCCcCCCCChhhhc-CCCCCcEEECC--C----CCCcccCc--
Q psy12291 212 ----------------------------FKHLTFLELSENWISSLNGDEFS-QLTSLKELHLG--Q----NYIETIPA-- 254 (404)
Q Consensus 212 ----------------------------l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~--~----~~l~~~~~-- 254 (404)
+++|+.|.+..+.++......+. .+++|+.|+++ + +.++..+.
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~ 422 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH
T ss_pred EEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh
Confidence 34455554444444333222232 46677777777 3 34443221
Q ss_pred ---ccccCCCCCcEEECcCCCccccccccccC-CCCCCeeecccccccccCcccc-CCCCCCcEEeCCCCCCcccCcc-c
Q psy12291 255 ---GSFANLQSLEKLFLYSNNIQELHAGTFAG-LTNLTALFLNNNLLRYLDTKAF-EPMLHLKKLQLDSNKLQYLATD-S 328 (404)
Q Consensus 255 ---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~-~ 328 (404)
..+..+++|+.|++++ .+++.....+.. +++|++|++++|.++......+ ..+++|+.|+|++|.++..... .
T Consensus 423 ~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~ 501 (594)
T 2p1m_B 423 GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN 501 (594)
T ss_dssp HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT
T ss_pred HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH
Confidence 1244567888888866 555544434443 7889999999998876544444 5688999999999998654332 3
Q ss_pred ccCCCCCcEEEccCCcc
Q psy12291 329 LSLLPNLITLKLAKNPW 345 (404)
Q Consensus 329 ~~~l~~L~~l~l~~Np~ 345 (404)
...+++|+.|++++|+.
T Consensus 502 ~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 502 ASKLETMRSLWMSSCSV 518 (594)
T ss_dssp GGGGGGSSEEEEESSCC
T ss_pred HHhCCCCCEEeeeCCCC
Confidence 45688999999999887
No 125
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=5.9e-22 Score=194.35 Aligned_cols=298 Identities=16% Similarity=0.141 Sum_probs=180.2
Q ss_pred CCeeEEEcCCCC-CcccC--------------hhhcCCCCCCCEEEccCCcCcccCccccc-CCCCCCEEeCCCC-CCcc
Q psy12291 45 VDIRVIDLGINQ-LSTLS--------------KDAFTGLYKLTELKLRKNHLSELPGKLFI-STINLSTMDLSQN-LIKT 107 (404)
Q Consensus 45 ~~l~~L~l~~~~-i~~~~--------------~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~n-~l~~ 107 (404)
+.+++|+++++. +..+. ...+..+++|++|+++++.+.......+. .+++|++|++++| .++.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 468999998875 22221 11234678999999999988855444443 6889999999999 5554
Q ss_pred c-CccccCCCCCCcEEEccCCCCCcCCCc----cCCCCCCCCEEECCCCccccccccc----ccCCccCcEEeccCCC--
Q psy12291 108 L-PSTFFKGAIRLTVVQLSYNAIESLPAN----VFHDLISLEELDLSQNVLTSIQYGT----FSGMYSLKRLKLQSNR-- 176 (404)
Q Consensus 108 ~-~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~~~~-- 176 (404)
. ....+.++++|++|++++|.++..... ....+++|+.|+++++. ..+.... +..+++|++|++++|.
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 2 223345789999999999987654432 23367799999999986 2222121 2345788888888761
Q ss_pred ------------CCCC------------------------------------CCCcc----CCCCCCCeEecCCCcCccc
Q psy12291 177 ------------INQL------------------------------------PPGIF----DDLKYLDFLSLRNNRLSFI 204 (404)
Q Consensus 177 ------------l~~~------------------------------------~~~~~----~~l~~L~~L~l~~~~~~~~ 204 (404)
+..+ ....+ ..+++|++|++++|.++..
T Consensus 225 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~ 304 (594)
T 2p1m_B 225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304 (594)
T ss_dssp HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH
T ss_pred HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH
Confidence 1111 11111 1458999999999986642
Q ss_pred C-CCccCCCCCCCEEECCCCcCCCCChhh-hcCCCCCcEEECCC---------CCCcccCc-------------------
Q psy12291 205 R-PGLFNYFKHLTFLELSENWISSLNGDE-FSQLTSLKELHLGQ---------NYIETIPA------------------- 254 (404)
Q Consensus 205 ~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~---------~~l~~~~~------------------- 254 (404)
. ...+..+++|+.|+++++ +....... ...+++|++|++.+ +.++....
T Consensus 305 ~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~ 383 (594)
T 2p1m_B 305 DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ 383 (594)
T ss_dssp HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC
T ss_pred HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC
Confidence 2 223567899999999987 32111111 22467777777733 22221110
Q ss_pred ------ccc-cCCCCCcEEECc--C----CCcccccc-----ccccCCCCCCeeecccccccccCccccCC-CCCCcEEe
Q psy12291 255 ------GSF-ANLQSLEKLFLY--S----NNIQELHA-----GTFAGLTNLTALFLNNNLLRYLDTKAFEP-MLHLKKLQ 315 (404)
Q Consensus 255 ------~~~-~~l~~L~~L~L~--~----n~l~~~~~-----~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~ 315 (404)
..+ ..+++|+.|+++ + +.++..+. ..+..+++|++|++++ .++......+.. +++|+.|+
T Consensus 384 l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~ 462 (594)
T 2p1m_B 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLS 462 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEE
T ss_pred cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEee
Confidence 011 124555555555 2 33332211 1133455666666654 343332222322 67888888
Q ss_pred CCCCCCcccCcccc-cCCCCCcEEEccCCcc
Q psy12291 316 LDSNKLQYLATDSL-SLLPNLITLKLAKNPW 345 (404)
Q Consensus 316 l~~n~l~~~~~~~~-~~l~~L~~l~l~~Np~ 345 (404)
+++|.+++.....+ ..+++|+.|++++|++
T Consensus 463 L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 463 VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp EESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred ccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 88888765444333 5689999999999986
No 126
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=1e-19 Score=159.19 Aligned_cols=148 Identities=24% Similarity=0.357 Sum_probs=68.6
Q ss_pred CCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEE
Q psy12291 187 DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKL 266 (404)
Q Consensus 187 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 266 (404)
.+++|+.|++++|.++.++ .+..+++|++|++++|.+..+++ +..+++|++|++++|.+..++. +.. ++|+.|
T Consensus 39 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L 111 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-ACLSRL 111 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SSCCEE
T ss_pred hcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc--ccc-CcccEE
Confidence 3344444444444443332 23344444444444444444432 4444444555555544444443 111 445555
Q ss_pred ECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccc
Q psy12291 267 FLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWH 346 (404)
Q Consensus 267 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~ 346 (404)
++++|.++.++ .+..+++|++|++++|+++.++ .+..+++|+.|++++|+++++ ..+..+++|+.|++++|++.
T Consensus 112 ~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 112 FLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred EccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 55555554442 2444555555555555555442 344445555555555555544 23444555555555555544
Q ss_pred c
Q psy12291 347 C 347 (404)
Q Consensus 347 C 347 (404)
+
T Consensus 186 ~ 186 (263)
T 1xeu_A 186 N 186 (263)
T ss_dssp C
T ss_pred C
Confidence 3
No 127
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.78 E-value=1.4e-18 Score=158.62 Aligned_cols=137 Identities=27% Similarity=0.493 Sum_probs=121.4
Q ss_pred cEEECCCC-CCcccCcccccCCCCCcEEECcC-CCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCC
Q psy12291 240 KELHLGQN-YIETIPAGSFANLQSLEKLFLYS-NNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLD 317 (404)
Q Consensus 240 ~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 317 (404)
..++++++ ++..+|. +..+++|+.|+|++ |.|+.+++..|.++++|++|+|++|+|+.+++..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 8888887 78889999999996 99999998899999999999999999999999999999999999999
Q ss_pred CCCCcccCcccccCCCCCcEEEccCCccccccCcHHHHHHHHhccCcccCCCCeeCCCCCCC
Q psy12291 318 SNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLG 379 (404)
Q Consensus 318 ~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~ 379 (404)
+|+|+.+++..+..++ |+.|+|.+|+|.|+|.+.|+..|++.....+....++|..|..++
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~ 149 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLA 149 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSS
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChHHh
Confidence 9999999988777766 999999999999999999999999887665545689999988443
No 128
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=8.1e-19 Score=153.40 Aligned_cols=172 Identities=23% Similarity=0.267 Sum_probs=121.9
Q ss_pred CCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEe
Q psy12291 116 AIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLS 195 (404)
Q Consensus 116 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 195 (404)
+.++..++++++.++.++. +..+++|+.|++++|.+..++ .+..+++|++|++++|.++.+++ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~~--~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEEC--HHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccccc--hhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 4456667777777777663 456778888888888877765 56777888888888888877765 67778888888
Q ss_pred cCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccc
Q psy12291 196 LRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE 275 (404)
Q Consensus 196 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 275 (404)
+++|+++.++.. .. ++|+.|++++|.+..++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+++
T Consensus 92 L~~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNLNGI--PS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCCTTC--CC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCcCcc--cc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcc
Confidence 888877765432 22 67777777777777653 4667777777777777777664 36667777777777777776
Q ss_pred cccccccCCCCCCeeecccccccccCc
Q psy12291 276 LHAGTFAGLTNLTALFLNNNLLRYLDT 302 (404)
Q Consensus 276 ~~~~~~~~~~~L~~L~l~~n~i~~~~~ 302 (404)
+ ..+..+++|++|++++|.++..+.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred h--HHhccCCCCCEEeCCCCcccCCcc
Confidence 6 446667777777777777665543
No 129
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.78 E-value=7.5e-17 Score=149.65 Aligned_cols=287 Identities=15% Similarity=0.295 Sum_probs=179.8
Q ss_pred eeEEEcCCCCCcccChhhcCCCCCCCEEEccCC---cCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEE
Q psy12291 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKN---HLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQ 123 (404)
Q Consensus 47 l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~---~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 123 (404)
|+.+.+.. .++.+...+|.++.+|+.+.+..+ .++.++..+|..+.+|+.+.+..+ ++.++..+|.++.+|+.+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 55555543 255555555555555555555543 245555555555555555544332 4455555555555555555
Q ss_pred ccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcc
Q psy12291 124 LSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSF 203 (404)
Q Consensus 124 l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 203 (404)
+..+ +..+....|..+..|+.+.+..+ +..+...+|.. .+|+.+.+..+ +..+...+|..+.++............
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhhhccccceeccccccccc
Confidence 5432 34455555555555555555432 44444445543 34555555443 334444455555555555544332221
Q ss_pred cCCCc-------------cCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcC
Q psy12291 204 IRPGL-------------FNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYS 270 (404)
Q Consensus 204 ~~~~~-------------~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~ 270 (404)
..... +.....+..+.+.. .+..+...+|.++.+|+.+.+..+ +..+....|..+++|+.+.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~- 296 (394)
T 4gt6_A 220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS- 296 (394)
T ss_dssp SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-
T ss_pred ccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-
Confidence 11110 11122333444432 233445567888899999998764 456777788999999999995
Q ss_pred CCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCc
Q psy12291 271 NNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344 (404)
Q Consensus 271 n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np 344 (404)
+.++.++..+|.++.+|+.+.+.. .++.++..+|.++.+|+.+.|..+ ++.++..+|..+.+|+.+++.++.
T Consensus 297 ~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 297 SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 578889899999999999999975 488899999999999999999654 889999999999999999998864
No 130
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=1.7e-18 Score=144.67 Aligned_cols=149 Identities=15% Similarity=0.198 Sum_probs=93.8
Q ss_pred CCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEEC
Q psy12291 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL 268 (404)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L 268 (404)
++|+.|++++|.++.++ .+..+++|++|++++|.+...+ .+..+++|++|++++|.+.......+..+++|+.|++
T Consensus 44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 34444444444444332 2444455555555555443332 4556667777777777766543345667777777777
Q ss_pred cCCCccccccccccCCCCCCeeeccccc-ccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCcc
Q psy12291 269 YSNNIQELHAGTFAGLTNLTALFLNNNL-LRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW 345 (404)
Q Consensus 269 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~ 345 (404)
++|.+++..+..+..+++|++|++++|+ ++.++ .+..+++|+.|++++|+++.++ .+..+++|+.|++++|++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 7777776555666777777777777776 66664 4666777778888777777765 466777888888887775
No 131
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=2.9e-18 Score=143.28 Aligned_cols=108 Identities=16% Similarity=0.220 Sum_probs=52.0
Q ss_pred CCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCC-CcccCcccccCCCCCc
Q psy12291 186 DDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY-IETIPAGSFANLQSLE 264 (404)
Q Consensus 186 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~ 264 (404)
..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|. +..++ .+..+++|+
T Consensus 85 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~ 162 (197)
T 4ezg_A 85 SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELK 162 (197)
T ss_dssp TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCC
T ss_pred hcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCC
Confidence 344444444444444443333344444555555555555544334445555555555555554 44443 244455555
Q ss_pred EEECcCCCccccccccccCCCCCCeeecccccc
Q psy12291 265 KLFLYSNNIQELHAGTFAGLTNLTALFLNNNLL 297 (404)
Q Consensus 265 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i 297 (404)
.|++++|.+++++ .+..+++|++|++++|+|
T Consensus 163 ~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 163 SLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred EEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 5555555555443 344455555555555544
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.76 E-value=1e-16 Score=148.72 Aligned_cols=293 Identities=19% Similarity=0.254 Sum_probs=226.8
Q ss_pred CCCccCCCCCCC-CCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCC--------
Q psy12291 33 DMEELPFDQIIP-VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN-------- 103 (404)
Q Consensus 33 ~l~~ip~~~~~~-~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n-------- 103 (404)
.+++|+...+.. .+|+.+.+.. .++.+...+|.++.+|+.+++.++ ++.++..+|.++..|+.+.+..+
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~a 135 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEA 135 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeeccee
Confidence 356676665543 6799999974 588888889999999999999754 77888888888888877666432
Q ss_pred -------------CCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEE
Q psy12291 104 -------------LIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRL 170 (404)
Q Consensus 104 -------------~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L 170 (404)
.+..+...+|.++.+|+.+.+..+ +..+....|.++.+|+.+.+..+ +..+...+|.++..|+.+
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred eecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 122345566888899999999765 56788888888889999988765 666666677777666666
Q ss_pred eccCC---------------------CCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCC
Q psy12291 171 KLQSN---------------------RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229 (404)
Q Consensus 171 ~l~~~---------------------~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 229 (404)
.+..+ .++.+....|..+..++.+.+..+. ..+....|..+..++.+...... ++
T Consensus 214 ~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~---i~ 289 (394)
T 4fs7_A 214 EFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI---VP 289 (394)
T ss_dssp CCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE---EC
T ss_pred ecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCcee---ec
Confidence 55432 2334556667788888888887653 44667788899999999887654 44
Q ss_pred hhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCC
Q psy12291 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPML 309 (404)
Q Consensus 230 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~ 309 (404)
..+|..+.+|+.+.+..+ +..++...|..+.+|+.+++.. .++.++..+|.++.+|+.+.+..+ ++.++..+|.+++
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred cccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 567888999999999765 8888888999999999999975 488999999999999999999876 8999999999999
Q ss_pred CCcEEeCCCCCCcccCcccccCCCCCcEE
Q psy12291 310 HLKKLQLDSNKLQYLATDSLSLLPNLITL 338 (404)
Q Consensus 310 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 338 (404)
+|+.+++..+ ++.+ ...+..+++|+.+
T Consensus 367 ~L~~i~lp~~-~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 367 NLKKVELPKR-LEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred CCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence 9999999764 4444 3567788888765
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.73 E-value=2.8e-17 Score=133.64 Aligned_cols=115 Identities=30% Similarity=0.509 Sum_probs=98.3
Q ss_pred CCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCC
Q psy12291 13 CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIST 92 (404)
Q Consensus 13 ~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 92 (404)
.||..|.|. .+.++|.+++++.+|.. ++..+++|++++|.|+.+.+..|.++++|++|++++|+++.+++..|..+
T Consensus 2 ~CP~~C~C~--~~~l~~s~n~l~~ip~~--~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 77 (170)
T 3g39_A 2 ACPSQCSCS--GTTVDCSGKSLASVPTG--IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77 (170)
T ss_dssp CCC-CCEEE--TTEEECTTSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred cCcCcCCcC--CCEEEeCCCCcCccCcc--CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCC
Confidence 589999996 57899999999999976 56889999999999999888888889999999999999988888888888
Q ss_pred CCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCc
Q psy12291 93 INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131 (404)
Q Consensus 93 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 131 (404)
++|++|++++|.++.+++..|..+++|++|++++|.+..
T Consensus 78 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 888888888888888888778888888888888887653
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.72 E-value=5.9e-17 Score=132.13 Aligned_cols=117 Identities=26% Similarity=0.471 Sum_probs=100.6
Q ss_pred CCCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccC
Q psy12291 12 RCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIS 91 (404)
Q Consensus 12 ~~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 91 (404)
..||..|.|. .+.++|.++++..+|.. ++.++++|++++|.|..+.+..|.++++|++|+|++|+++.++...|..
T Consensus 4 ~~CP~~C~C~--~~~l~~~~n~l~~iP~~--~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 4 AGCPSQCSCD--QTLVNCQNIRLASVPAG--IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp CSSCTTSEEC--SSEEECCSSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCCCEEC--CcEEEeCCCCCCccCCC--cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence 3789999996 47899999999999986 5688999999999999888888888999999999999999888888888
Q ss_pred CCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcC
Q psy12291 92 TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL 132 (404)
Q Consensus 92 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 132 (404)
+++|++|++++|.++.+++..|..+++|++|++++|.+...
T Consensus 80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 88888888888888888887788888888888888877643
No 135
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.72 E-value=2.4e-15 Score=139.46 Aligned_cols=308 Identities=16% Similarity=0.284 Sum_probs=235.1
Q ss_pred CCceEEecCCCCCccCCCCCC-CCCeeEEEcCCC---CCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEE
Q psy12291 23 EIHTLSCWKQDMEELPFDQII-PVDIRVIDLGIN---QLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTM 98 (404)
Q Consensus 23 ~~~~~~~~~~~l~~ip~~~~~-~~~l~~L~l~~~---~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 98 (404)
.++.|..-. +++.|....+. ..+|+.+.+..+ .++.+...+|.++.+|+.+.+..+ ++.++..+|..+.+|+.+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 356677653 57888777654 368999999865 488888999999999999888654 788999999999999999
Q ss_pred eCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCC
Q psy12291 99 DLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178 (404)
Q Consensus 99 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~ 178 (404)
.+.. .+..++..+|..+.+|+.+.+..+ ++.+...+|.+ ..|+.+.+..+ +..+...+|.++.+++..........
T Consensus 143 ~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 143 TIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp ECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSC
T ss_pred cccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhhhccccceecccccccc
Confidence 9964 467888888999999999999865 77888888865 68999999754 55667788888999998887766544
Q ss_pred CCCCCccC-------------CCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECC
Q psy12291 179 QLPPGIFD-------------DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLG 245 (404)
Q Consensus 179 ~~~~~~~~-------------~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 245 (404)
.+....+. ....+..+.+. +.++.+....|..+..|+.+.+..+ +..+...+|.++++|+.+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~ 296 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS 296 (394)
T ss_dssp BSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred cccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccc-cceecCcccccccccccccCC
Confidence 33322221 12233444443 2345566678899999999999765 345667789999999999996
Q ss_pred CCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccC
Q psy12291 246 QNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLA 325 (404)
Q Consensus 246 ~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 325 (404)
+.+..++...|..+.+|+.+.+.. .++.+...+|.+|.+|+.+.+.. .++.++..+|.++.+|+.+++.++...
T Consensus 297 -~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~--- 370 (394)
T 4gt6_A 297 -SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQ--- 370 (394)
T ss_dssp -TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHH---
T ss_pred -CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCceee---
Confidence 568889988999999999999976 48889999999999999999965 489999999999999999999987533
Q ss_pred cccccCCCCCcEEEccCCc
Q psy12291 326 TDSLSLLPNLITLKLAKNP 344 (404)
Q Consensus 326 ~~~~~~l~~L~~l~l~~Np 344 (404)
.+.+..+.+|+.+.+..|.
T Consensus 371 ~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 371 WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp HHTCBCCCCC---------
T ss_pred hhhhhccCCCCEEEeCCCC
Confidence 1346677888888876553
No 136
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.70 E-value=3.3e-17 Score=125.95 Aligned_cols=108 Identities=29% Similarity=0.446 Sum_probs=88.0
Q ss_pred Ceeeccccccc--ccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHHHHHHHHhccCcc
Q psy12291 288 TALFLNNNLLR--YLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKV 365 (404)
Q Consensus 288 ~~L~l~~n~i~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~ 365 (404)
..++.++++++ .++... .++|+.|+|++|+|+.++.+.+..+++|+.|+|.+|||.|||.+.||..|+.......
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~ 87 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA 87 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSG
T ss_pred CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccc
Confidence 36677777777 665432 2479999999999999999999999999999999999999999999999999876555
Q ss_pred cCCCCeeCCCCCCCCCcccCCCCcCC---CCccccc
Q psy12291 366 WDSKPTCRGPGNLGGKSVEDMSFDDL---CEGQWAS 398 (404)
Q Consensus 366 ~~~~~~C~~p~~l~~~~l~~~~~~~~---C~~~~~~ 398 (404)
.....+|++|+.++|+.+.++..+++ |......
T Consensus 88 ~~~~~~C~~P~~l~g~~l~~l~~~~l~c~C~~~~~~ 123 (130)
T 3rfe_A 88 PYRDLRCVAPPALRGRLLPYLAEDELRAACAPGPLS 123 (130)
T ss_dssp GGTTCBCCBSTTTTTCBGGGCCHHHHHHTTCC----
T ss_pred cccCcEeCcChHHcCCCcccCCHHHhhCcCCCCccc
Confidence 44579999999999999999998776 5544433
No 137
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.69 E-value=6.1e-15 Score=136.15 Aligned_cols=282 Identities=17% Similarity=0.297 Sum_probs=154.4
Q ss_pred CeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEcc
Q psy12291 46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLS 125 (404)
Q Consensus 46 ~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 125 (404)
+++.+.+.. .++.|...+|.++.+|+.+.|..+ ++.|+..+|.++ +|+.+.+.. .++.++..+|... +|+.+.+.
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DLDDFEFP 121 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CCSEEECC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccC-CcccccCC
Confidence 567777754 477777788888888888888654 777888888776 577776654 3667777777654 78888876
Q ss_pred CCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCC------------CCccCCCCCCCe
Q psy12291 126 YNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP------------PGIFDDLKYLDF 193 (404)
Q Consensus 126 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~------------~~~~~~l~~L~~ 193 (404)
.+ ++.+...+|.+. +++.+.+.. .+..+...+|..+.+++.+.+......... ...+.....+..
T Consensus 122 ~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (379)
T 4h09_A 122 GA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE 198 (379)
T ss_dssp TT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred Cc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence 54 455666666553 566665543 345555566666666766665543221100 011122223333
Q ss_pred EecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCc
Q psy12291 194 LSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNI 273 (404)
Q Consensus 194 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l 273 (404)
+.+... ...+....+....+++.+.+..+ +..+...++.++..|+.+.+..+ +..+....|..+.+|+.+.+.. .+
T Consensus 199 ~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i 274 (379)
T 4h09_A 199 FTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KV 274 (379)
T ss_dssp EECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CC
T ss_pred cccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cc
Confidence 333221 11222333444455555555432 33333444555555555555443 4445444555555555555532 34
Q ss_pred cccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEc
Q psy12291 274 QELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKL 340 (404)
Q Consensus 274 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 340 (404)
+.++..+|.++++|+.+.+.++.++.++..+|..+.+|+.+.|..+ ++.++..+|..+.+|+.+.+
T Consensus 275 ~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 275 KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 4455555555555555555555555555555555555555555432 55555555555555555544
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=2.9e-19 Score=172.55 Aligned_cols=122 Identities=25% Similarity=0.325 Sum_probs=101.5
Q ss_pred CCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecc
Q psy12291 214 HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLN 293 (404)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 293 (404)
.|+.|++++|.++.++. +..+++|+.|++++|.+..+|. .+..+++|+.|+|++|.++.++ .++.+++|++|+|+
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECC
Confidence 48889999998888763 8888899999999999888876 6888899999999999998875 68888999999999
Q ss_pred cccccccC-ccccCCCCCCcEEeCCCCCCcccCccc---ccCCCCCcEEEc
Q psy12291 294 NNLLRYLD-TKAFEPMLHLKKLQLDSNKLQYLATDS---LSLLPNLITLKL 340 (404)
Q Consensus 294 ~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~l~l 340 (404)
+|+++.+. +..+..+++|+.|+|++|+++++++.. +..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99998886 777888899999999999988876532 334788888864
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.6e-20 Score=181.31 Aligned_cols=122 Identities=23% Similarity=0.293 Sum_probs=89.1
Q ss_pred CCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECc
Q psy12291 190 YLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLY 269 (404)
Q Consensus 190 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~ 269 (404)
.|+.|++++|.++.++ . +..+++|+.|++++|.+..++ ..+..+++|+.|++++|.++.+| .+..+++|+.|+|+
T Consensus 442 ~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVD--GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCCc-C-ccccccCcEeecCcccccccc-hhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECC
Confidence 3667777777777654 2 667777777777777777654 46777788888888888887766 47778888888888
Q ss_pred CCCccccc-cccccCCCCCCeeecccccccccCcc---ccCCCCCCcEEeC
Q psy12291 270 SNNIQELH-AGTFAGLTNLTALFLNNNLLRYLDTK---AFEPMLHLKKLQL 316 (404)
Q Consensus 270 ~n~l~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l 316 (404)
+|.++.+. +..+..+++|++|+|++|.++.+++. .+..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88888775 66777888888888888888776542 2334677887764
No 140
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=1.1e-16 Score=130.06 Aligned_cols=137 Identities=20% Similarity=0.186 Sum_probs=96.2
Q ss_pred CCCCeeEEEcCCCCCc--ccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCc
Q psy12291 43 IPVDIRVIDLGINQLS--TLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLT 120 (404)
Q Consensus 43 ~~~~l~~L~l~~~~i~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 120 (404)
.+.++++|++++|.+. .+ +..+..+++|+.|++++|.+..+ ..|..+++|++|++++|.+....+..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 4567888888888776 44 34467777888888888877776 4467777788888888877774444455677788
Q ss_pred EEEccCCCCCcCCC-ccCCCCCCCCEEECCCCccccccc---ccccCCccCcEEeccCCCCCCCCC
Q psy12291 121 VVQLSYNAIESLPA-NVFHDLISLEELDLSQNVLTSIQY---GTFSGMYSLKRLKLQSNRINQLPP 182 (404)
Q Consensus 121 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l~~~~l~~~~~ 182 (404)
+|++++|.++.++. ..+..+++|+.|++++|.+..+.. ..+..+++|++|++++|.+..++.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 88887777777653 456667777777777777776654 456667777777777776666554
No 141
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.8e-16 Score=128.81 Aligned_cols=93 Identities=24% Similarity=0.213 Sum_probs=42.3
Q ss_pred hcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCcccccc-ccccCCCCCCeeecccccccccCc---cccCCC
Q psy12291 233 FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHA-GTFAGLTNLTALFLNNNLLRYLDT---KAFEPM 308 (404)
Q Consensus 233 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~l 308 (404)
+..+++|++|++++|.+....+..+..+++|+.|++++|.++.++. ..+..+++|++|++++|.++.++. ..+..+
T Consensus 67 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 146 (168)
T 2ell_A 67 LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146 (168)
T ss_dssp CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC
T ss_pred hccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC
Confidence 3334444444444444444222233334444444444444444432 334444555555555555544443 344455
Q ss_pred CCCcEEeCCCCCCcccC
Q psy12291 309 LHLKKLQLDSNKLQYLA 325 (404)
Q Consensus 309 ~~L~~L~l~~n~l~~~~ 325 (404)
++|+.|++++|.+..++
T Consensus 147 ~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 147 PQLTYLDGYDREDQEAP 163 (168)
T ss_dssp SSCCEETTEETTSCBCC
T ss_pred ccCcEecCCCCChhhcc
Confidence 55555555555554443
No 142
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.65 E-value=2.5e-14 Score=132.02 Aligned_cols=267 Identities=15% Similarity=0.238 Sum_probs=211.9
Q ss_pred cCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCC
Q psy12291 65 FTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144 (404)
Q Consensus 65 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 144 (404)
+....+|+.+.+.. .++.|+..+|.++.+|+.+++.. .++.|+..+|.++ +|+.+.+..+ ++.+...+|.. .+|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 55667899999975 58899999999999999999975 4889999999987 7888888654 78888888876 4899
Q ss_pred EEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCccc------------CCCccCCC
Q psy12291 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI------------RPGLFNYF 212 (404)
Q Consensus 145 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~------------~~~~~~~l 212 (404)
.+.+..+ +..+...+|.+. +++.+.+.. .++.+....|..+.+++.+.+........ ....+...
T Consensus 117 ~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EEECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred cccCCCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 9999764 566666777765 677777665 36777778888889999888876542211 11234445
Q ss_pred CCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeec
Q psy12291 213 KHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFL 292 (404)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l 292 (404)
..+..+.+.... ..+...++....+|+.+.+..+ +..+....+..+..|+.+.+..+ ++.+...+|.++.+|+.+.+
T Consensus 194 ~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l 270 (379)
T 4h09_A 194 KTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF 270 (379)
T ss_dssp CCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc
Confidence 566666665532 3344456777889999998764 67777778889999999999765 88888899999999999999
Q ss_pred ccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCC
Q psy12291 293 NNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343 (404)
Q Consensus 293 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~N 343 (404)
.. .++.++..+|..+++|+.+.+.++.++.++...|..+.+|+.+.|..+
T Consensus 271 ~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 271 YA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred cc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 64 588888899999999999999999999999999999999999999654
No 143
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=4.2e-16 Score=123.90 Aligned_cols=127 Identities=22% Similarity=0.201 Sum_probs=69.5
Q ss_pred CCCCEEECCCCcCC-CCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeee
Q psy12291 213 KHLTFLELSENWIS-SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALF 291 (404)
Q Consensus 213 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 291 (404)
++++.|++++|.+. ...+..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.++...+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34455555555444 12223344555555555555555555 2355556666666666666553344444556666666
Q ss_pred cccccccccC-ccccCCCCCCcEEeCCCCCCcccCc---ccccCCCCCcEEEcc
Q psy12291 292 LNNNLLRYLD-TKAFEPMLHLKKLQLDSNKLQYLAT---DSLSLLPNLITLKLA 341 (404)
Q Consensus 292 l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~l~l~ 341 (404)
+++|+++.++ +..+..+++|++|++++|.++++++ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666665543 2455556666666666666666655 455566666666654
No 144
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=5.4e-16 Score=126.93 Aligned_cols=133 Identities=20% Similarity=0.260 Sum_probs=104.4
Q ss_pred cCCCCCCCEEECCCCcCCCCChhhhcCC-CCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCC
Q psy12291 209 FNYFKHLTFLELSENWISSLNGDEFSQL-TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNL 287 (404)
Q Consensus 209 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 287 (404)
+..+++|+.|++++|.+..++ .+..+ ++|+.|++++|.+..++ .+..+++|+.|++++|.++.+++..|..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchhH--HhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 445667777777777777663 23333 48888888888888773 57788888888888888888877777888889
Q ss_pred CeeecccccccccCc-cccCCCCCCcEEeCCCCCCcccCcc---cccCCCCCcEEEccCCcc
Q psy12291 288 TALFLNNNLLRYLDT-KAFEPMLHLKKLQLDSNKLQYLATD---SLSLLPNLITLKLAKNPW 345 (404)
Q Consensus 288 ~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~l~l~~Np~ 345 (404)
++|++++|+++.++. ..+..+++|+.|++++|.+..++.. .+..+++|+.|++++|+.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 999999998887764 4677888999999999998887664 577889999999988865
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=1.3e-16 Score=158.92 Aligned_cols=178 Identities=21% Similarity=0.228 Sum_probs=89.2
Q ss_pred cccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCC
Q psy12291 158 YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLT 237 (404)
Q Consensus 158 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 237 (404)
+..+..+..|+.|+|++|.+..++...+ .+++|++|++++|.++.+ +..+..+++|++|+|++|.+..++ ..+..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSLP-AELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSCC-SSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCccC-hhhcCCC
Confidence 3455566666666666666666665543 566677777777766644 345666777777777777777553 4567777
Q ss_pred CCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCC-CCCeeecccccccccCccccCCCCCCcEEeC
Q psy12291 238 SLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLT-NLTALFLNNNLLRYLDTKAFEPMLHLKKLQL 316 (404)
Q Consensus 238 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 316 (404)
+|++|++++|.+..+|.. |..+++|+.|+|++|.++...+..+.... .+..+++++|.++...+ ..|+.|++
T Consensus 294 ~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l 366 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEI 366 (727)
T ss_dssp TCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC------
T ss_pred CCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEe
Confidence 777777777777777663 67777777777777777766554443321 22246677776654332 34555666
Q ss_pred CCC--------CCcccCcccccCCCCCcEEEccCCcc
Q psy12291 317 DSN--------KLQYLATDSLSLLPNLITLKLAKNPW 345 (404)
Q Consensus 317 ~~n--------~l~~~~~~~~~~l~~L~~l~l~~Np~ 345 (404)
+.| .+.......+..+..+....++.|-+
T Consensus 367 ~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 367 NTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp -----------------------------------CC
T ss_pred ecccccccccCCccccccchhhcccccceeeeecccc
Confidence 655 22222222233344445555555554
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=1.4e-16 Score=158.58 Aligned_cols=191 Identities=23% Similarity=0.221 Sum_probs=97.6
Q ss_pred CCeeEEEcCCCCCcccChhhcCCCCCCCEE-----EccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCC
Q psy12291 45 VDIRVIDLGINQLSTLSKDAFTGLYKLTEL-----KLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRL 119 (404)
Q Consensus 45 ~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L-----~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 119 (404)
..++.|++.++.+..+... +.....|..+ ++..|.+. +++..|..++.|+.|+|++|.+..++...+ .+++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~-~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQA-LLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSC
T ss_pred CccceEEeeCCCCCcchhh-HhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCC
Confidence 3578888888877765332 2222222222 22233333 445567778888888888888888877655 67888
Q ss_pred cEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCC
Q psy12291 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199 (404)
Q Consensus 120 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 199 (404)
++|+|++|.++.++.. |..+++|+.|+|++|.+..+ +..|.++++|++|+|++|.++.++.. |..+++|+.|++++|
T Consensus 250 ~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAE-IKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCSCCCGG-GGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCcccChh-hhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCC
Confidence 8888888888877643 56778888888888888765 45677778888888888888777665 677888888888888
Q ss_pred cCcccCCCccCCCC-CCCEEECCCCcCCCCChhhhcCCCCCcEEECCCC
Q psy12291 200 RLSFIRPGLFNYFK-HLTFLELSENWISSLNGDEFSQLTSLKELHLGQN 247 (404)
Q Consensus 200 ~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 247 (404)
.+++..+..+.... ....+++++|.+....+ ..|+.|+++.|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 87765554443221 11235566666654433 24556666655
No 147
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=1.2e-15 Score=121.21 Aligned_cols=125 Identities=30% Similarity=0.362 Sum_probs=62.1
Q ss_pred ccCcEEeccCCCCC--CCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEE
Q psy12291 165 YSLKRLKLQSNRIN--QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKEL 242 (404)
Q Consensus 165 ~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 242 (404)
++|+.|++++|.++ .++ ..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 45666666666665 333 2345566666666666655544 344555555555555555554333344444555555
Q ss_pred ECCCCCCcccCc-ccccCCCCCcEEECcCCCcccccc---ccccCCCCCCeeec
Q psy12291 243 HLGQNYIETIPA-GSFANLQSLEKLFLYSNNIQELHA---GTFAGLTNLTALFL 292 (404)
Q Consensus 243 ~l~~~~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~l 292 (404)
++++|.+..++. ..+..+++|+.|++++|.++.++. ..+..+++|++|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 555555444321 234444444444444444444433 23334444444443
No 148
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=2.6e-15 Score=122.86 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=68.1
Q ss_pred ccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCc
Q psy12291 161 FSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLK 240 (404)
Q Consensus 161 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 240 (404)
+.++.+|+.|++++|.++.++. .....++|++|++++|.++.+ ..+..+++|++|++++|.+..+++..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3344555666666665555432 112222555555555555544 2344455555555555555554444445555555
Q ss_pred EEECCCCCCcccCc-ccccCCCCCcEEECcCCCccccccc---cccCCCCCCeeeccccccc
Q psy12291 241 ELHLGQNYIETIPA-GSFANLQSLEKLFLYSNNIQELHAG---TFAGLTNLTALFLNNNLLR 298 (404)
Q Consensus 241 ~L~l~~~~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~l~~n~i~ 298 (404)
+|++++|.+..++. ..+..+++|+.|++++|.+..++.. .+..+++|++|++++|.+.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 55555555554443 2344555555555555555544332 3445555555555555443
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.54 E-value=3.7e-14 Score=129.27 Aligned_cols=114 Identities=23% Similarity=0.306 Sum_probs=95.9
Q ss_pred CCCCc-eecCCCceEEecCC-CCCccCCCCCCCCCeeEEEcCC-CCCcccChhhcCCCCCCCEEEccCCcCcccCccccc
Q psy12291 14 CEGPC-RCRPEIHTLSCWKQ-DMEELPFDQIIPVDIRVIDLGI-NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFI 90 (404)
Q Consensus 14 ~~~~c-~c~~~~~~~~~~~~-~l~~ip~~~~~~~~l~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 90 (404)
||..| .|.. ..++|.++ +++.+|. .....+|+.|++++ |.+..+.+..|.++++|+.|+|++|+|.++++..|.
T Consensus 1 cp~~c~~C~~--~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 77 (347)
T 2ifg_A 1 CPDACCPHGS--SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77 (347)
T ss_dssp CCSSSCCSSS--SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG
T ss_pred CCCcCccccC--CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhc
Confidence 78889 8864 57899998 8999998 44445699999986 889988888899999999999999999988888888
Q ss_pred CCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCc
Q psy12291 91 STINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131 (404)
Q Consensus 91 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 131 (404)
.+++|++|+|++|.|+.+|+..|..++ |+.|++.+|.+..
T Consensus 78 ~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 78 FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 899999999999999888887776665 8888888887763
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=5.5e-17 Score=135.56 Aligned_cols=113 Identities=31% Similarity=0.396 Sum_probs=51.6
Q ss_pred hhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCC
Q psy12291 232 EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHL 311 (404)
Q Consensus 232 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 311 (404)
.+..+++|++|++++|.+..++ .+..+++|+.|++++|.++.++. .+..+++|++|++++|+++.++ .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHH--HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCC--ccccCCCC
Confidence 3444444444444444444443 24444444444444444444422 2233344555555555444432 23344445
Q ss_pred cEEeCCCCCCcccCc-ccccCCCCCcEEEccCCcccccc
Q psy12291 312 KKLQLDSNKLQYLAT-DSLSLLPNLITLKLAKNPWHCDC 349 (404)
Q Consensus 312 ~~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~Np~~C~c 349 (404)
+.|++++|+++.++. ..+..+++|+.|++++|++.+.|
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 555555555544332 23444555555555555554443
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=3.1e-15 Score=124.89 Aligned_cols=152 Identities=27% Similarity=0.323 Sum_probs=124.5
Q ss_pred CCCCCeEecCCCcCcccCCC------ccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCC
Q psy12291 188 LKYLDFLSLRNNRLSFIRPG------LFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ 261 (404)
Q Consensus 188 l~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~ 261 (404)
...++.++++.+.+....+. .+..+++|++|++++|.+..++ .+..+++|+.|++++|.+..++. .+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCC
Confidence 34555555555555544333 6788999999999999999876 78889999999999999998876 566678
Q ss_pred CCcEEECcCCCccccccccccCCCCCCeeecccccccccCc-cccCCCCCCcEEeCCCCCCcccCcc----------ccc
Q psy12291 262 SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDT-KAFEPMLHLKKLQLDSNKLQYLATD----------SLS 330 (404)
Q Consensus 262 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~ 330 (404)
+|+.|++++|.++.++ .+..+++|++|++++|+++.++. ..+..+++|++|++++|.+....+. .+.
T Consensus 94 ~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 9999999999999975 47889999999999999998765 6788999999999999999776433 367
Q ss_pred CCCCCcEEEccCCccc
Q psy12291 331 LLPNLITLKLAKNPWH 346 (404)
Q Consensus 331 ~l~~L~~l~l~~Np~~ 346 (404)
.+++|+.|+ +|++.
T Consensus 172 ~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVD 185 (198)
T ss_dssp HCSSCSEEC--CGGGT
T ss_pred hCCCcEEEC--CcccC
Confidence 889999887 77764
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=3.8e-14 Score=129.70 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=58.0
Q ss_pred CCCEEECCCCcCCCCChhhh-----cCCCCCcEEECCCCCCcccCcc----cccCCCCCcEEECcCCCccccc----ccc
Q psy12291 214 HLTFLELSENWISSLNGDEF-----SQLTSLKELHLGQNYIETIPAG----SFANLQSLEKLFLYSNNIQELH----AGT 280 (404)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~----~~~ 280 (404)
+|+.|++++|.++......+ ...++|++|++++|.++..... .+..+++|++|+|++|.+++.. ...
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 44455555554443322222 1234566666666655432211 2244556666666666655433 123
Q ss_pred ccCCCCCCeeecccccccccCc----cccCCCCCCcEEeCCCCCCcccCcccc
Q psy12291 281 FAGLTNLTALFLNNNLLRYLDT----KAFEPMLHLKKLQLDSNKLQYLATDSL 329 (404)
Q Consensus 281 ~~~~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~ 329 (404)
+...++|++|+|++|.|+.... .++...++|++|+|++|.++......+
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 4445566666666666654332 223334566666666666665444333
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=1.3e-13 Score=126.24 Aligned_cols=158 Identities=18% Similarity=0.123 Sum_probs=112.8
Q ss_pred CCCCeEecCCCcCcccCCCc----cC-CCCCCCEEECCCCcCCCCChhhh-cCCCCCcEEECCCCCCcccCcccc-----
Q psy12291 189 KYLDFLSLRNNRLSFIRPGL----FN-YFKHLTFLELSENWISSLNGDEF-SQLTSLKELHLGQNYIETIPAGSF----- 257 (404)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~----~~-~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~----- 257 (404)
++|+.|++++|.++...... +. ..++|+.|++++|.+.......+ ..+++|++|++++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 34556666666554322111 11 23678888888887765433332 245689999999999976543333
Q ss_pred cCCCCCcEEECcCCCccccccc----cccCCCCCCeeecccccccccC----ccccCCCCCCcEEeCCCCCCcccCcc--
Q psy12291 258 ANLQSLEKLFLYSNNIQELHAG----TFAGLTNLTALFLNNNLLRYLD----TKAFEPMLHLKKLQLDSNKLQYLATD-- 327 (404)
Q Consensus 258 ~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~-- 327 (404)
...++|+.|+|++|.+++.... .+...++|++|+|++|.|+... ...+...++|+.|+|++|.++.....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 3468999999999999875443 3467899999999999998754 35566778999999999999875443
Q ss_pred --cccCCCCCcEEEccCCccc
Q psy12291 328 --SLSLLPNLITLKLAKNPWH 346 (404)
Q Consensus 328 --~~~~l~~L~~l~l~~Np~~ 346 (404)
.+...++|+.|+|++|++.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 3445789999999999874
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=8.8e-10 Score=99.96 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=32.0
Q ss_pred CCCCcEEECcCCCccccccccc---cCCCCCCeeecccccccccCccc----cCCCCCCcEEeCCCCCCcc
Q psy12291 260 LQSLEKLFLYSNNIQELHAGTF---AGLTNLTALFLNNNLLRYLDTKA----FEPMLHLKKLQLDSNKLQY 323 (404)
Q Consensus 260 l~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~ 323 (404)
+|+|+.|+|.+|.+.+.....+ ..+++|++|+|+.|.++...... +..+++|+.|++++|.++.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 4666666666665553211111 23456666666666555432211 1234556666666665543
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=1.1e-08 Score=92.76 Aligned_cols=133 Identities=17% Similarity=0.196 Sum_probs=82.5
Q ss_pred cCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCccccc--CCCCCcEEECcC--CC------cccccc
Q psy12291 209 FNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA--NLQSLEKLFLYS--NN------IQELHA 278 (404)
Q Consensus 209 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~--~l~~L~~L~L~~--n~------l~~~~~ 278 (404)
+..+|+|+.|.+.++.-...++ + .+++|++|++..+.+..-....+. .+|+|+.|+|+. +. +..+..
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 3445666666666552111221 2 256777777777765432222222 567888887742 11 222211
Q ss_pred ccc--cCCCCCCeeecccccccccCcccc---CCCCCCcEEeCCCCCCcccCccc----ccCCCCCcEEEccCCcc
Q psy12291 279 GTF--AGLTNLTALFLNNNLLRYLDTKAF---EPMLHLKKLQLDSNKLQYLATDS----LSLLPNLITLKLAKNPW 345 (404)
Q Consensus 279 ~~~--~~~~~L~~L~l~~n~i~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~l~l~~Np~ 345 (404)
.+ ..+|+|++|++++|.+.......+ ..+++|++|+|+.|.+....... +..+++|+.|++++|++
T Consensus 245 -~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 245 -LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp -GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred -HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 12 357999999999998875322222 35789999999999998754322 34578999999998875
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.64 E-value=6.3e-08 Score=73.95 Aligned_cols=66 Identities=27% Similarity=0.492 Sum_probs=56.7
Q ss_pred CCCCCceecCCCceEEecCCCCC--ccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCc
Q psy12291 13 CCEGPCRCRPEIHTLSCWKQDME--ELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS 82 (404)
Q Consensus 13 ~~~~~c~c~~~~~~~~~~~~~l~--~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~ 82 (404)
.||..|.|.. ..++|.+++++ .+|.. +|.++++|+|++|.|+.+....|..+++|+.|+|++|.+.
T Consensus 1 ~CP~~C~C~~--~~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 1 PCPAPCSCAG--TLVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CCCTTCEEET--TEEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CcCCCCEEcC--CEEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3899999974 68999999999 99976 8888999999999999988888888888888888887554
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.48 E-value=3e-08 Score=81.15 Aligned_cols=114 Identities=15% Similarity=0.124 Sum_probs=68.1
Q ss_pred hcCCCCCcEEECCCC-CCcccC----cccccCCCCCcEEECcCCCcccccc----ccccCCCCCCeeecccccccccC--
Q psy12291 233 FSQLTSLKELHLGQN-YIETIP----AGSFANLQSLEKLFLYSNNIQELHA----GTFAGLTNLTALFLNNNLLRYLD-- 301 (404)
Q Consensus 233 ~~~l~~L~~L~l~~~-~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~l~~n~i~~~~-- 301 (404)
+...++|++|++++| .+.... ...+...++|++|+|++|.+.+... ..+...++|++|+|++|.|+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344555666666665 554321 1123445667777777776665332 22334466777777777776533
Q ss_pred --ccccCCCCCCcEEeC--CCCCCcccCc----ccccCCCCCcEEEccCCccc
Q psy12291 302 --TKAFEPMLHLKKLQL--DSNKLQYLAT----DSLSLLPNLITLKLAKNPWH 346 (404)
Q Consensus 302 --~~~~~~l~~L~~L~l--~~n~l~~~~~----~~~~~l~~L~~l~l~~Np~~ 346 (404)
..++...+.|++|+| ++|.+..... ..+...++|++|+|++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 244555677888888 7787776432 23445678888888888764
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=6.7e-08 Score=79.07 Aligned_cols=115 Identities=17% Similarity=0.029 Sum_probs=70.0
Q ss_pred cCCCCCCCEEECCCC-cCCCCCh----hhhcCCCCCcEEECCCCCCcccCc----ccccCCCCCcEEECcCCCcccccc-
Q psy12291 209 FNYFKHLTFLELSEN-WISSLNG----DEFSQLTSLKELHLGQNYIETIPA----GSFANLQSLEKLFLYSNNIQELHA- 278 (404)
Q Consensus 209 ~~~l~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~- 278 (404)
+...+.|++|++++| .+..... ..+...++|++|++++|.+..... ..+...++|++|+|++|.|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 444566666666666 5543221 234455667777777776654221 123445677777887777775432
Q ss_pred ---ccccCCCCCCeeec--ccccccccCc----cccCCCCCCcEEeCCCCCCcc
Q psy12291 279 ---GTFAGLTNLTALFL--NNNLLRYLDT----KAFEPMLHLKKLQLDSNKLQY 323 (404)
Q Consensus 279 ---~~~~~~~~L~~L~l--~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~ 323 (404)
.++...++|++|+| ++|.|+.... ..+...+.|++|+|++|.+..
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 34555677888888 6777765432 344455778888888887653
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=2.3e-07 Score=74.04 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=66.2
Q ss_pred ccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCC-cCcccCcccccCC----CCCCEEeCCCC-CCcccC
Q psy12291 36 ELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKN-HLSELPGKLFIST----INLSTMDLSQN-LIKTLP 109 (404)
Q Consensus 36 ~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~----~~L~~L~l~~n-~l~~~~ 109 (404)
.+|........|++||++++.|+......+.++++|++|+|++| .+++-....+..+ ++|++|++++| .+++-.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 45554334457999999999888777777888999999999988 4775444444543 46888888888 477543
Q ss_pred ccccCCCCCCcEEEccCCC
Q psy12291 110 STFFKGAIRLTVVQLSYNA 128 (404)
Q Consensus 110 ~~~~~~~~~L~~L~l~~n~ 128 (404)
-..+..+++|++|+++++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHGGGCTTCCEEEEESCT
T ss_pred HHHHhcCCCCCEEECCCCC
Confidence 3345667788888887764
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.31 E-value=1.5e-07 Score=75.06 Aligned_cols=86 Identities=13% Similarity=0.065 Sum_probs=47.8
Q ss_pred CCcEEECcCCCccccccccccCCCCCCeeeccccc-ccccCccccCCC----CCCcEEeCCCC-CCcccCcccccCCCCC
Q psy12291 262 SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNL-LRYLDTKAFEPM----LHLKKLQLDSN-KLQYLATDSLSLLPNL 335 (404)
Q Consensus 262 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~l----~~L~~L~l~~n-~l~~~~~~~~~~l~~L 335 (404)
.|+.|+++++.+++.....+.++++|++|+|++|. |+......+..+ ++|++|+|++| ++++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45666666665555555555556666666666653 544433333332 35666666665 3555444445566666
Q ss_pred cEEEccCCcccc
Q psy12291 336 ITLKLAKNPWHC 347 (404)
Q Consensus 336 ~~l~l~~Np~~C 347 (404)
+.|+++++|-.-
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 777776655433
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.20 E-value=8.1e-07 Score=76.40 Aligned_cols=41 Identities=27% Similarity=0.258 Sum_probs=18.4
Q ss_pred CCCCcEEECcCCCcccccc--ccccCCCCCCeeeccccccccc
Q psy12291 260 LQSLEKLFLYSNNIQELHA--GTFAGLTNLTALFLNNNLLRYL 300 (404)
Q Consensus 260 l~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~l~~n~i~~~ 300 (404)
+++|+.|+|++|.|+.+.. ..+..+++|+.|+|++|+|+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence 4445555555555444332 2223344444444444444443
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.04 E-value=2.5e-06 Score=73.36 Aligned_cols=63 Identities=24% Similarity=0.351 Sum_probs=34.0
Q ss_pred CCCCCcEEECCCCCCcccCc--ccccCCCCCcEEECcCCCcccccc-ccccCCCCCCeeeccccccc
Q psy12291 235 QLTSLKELHLGQNYIETIPA--GSFANLQSLEKLFLYSNNIQELHA-GTFAGLTNLTALFLNNNLLR 298 (404)
Q Consensus 235 ~l~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~i~ 298 (404)
.+++|+.|++++|.+..++. ..+..+++|+.|+|++|.|+++.. ..+..+ +|++|+|++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 45566666666666655432 234456666666666666665521 222222 5555555555554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.30 E-value=0.00027 Score=57.44 Aligned_cols=111 Identities=15% Similarity=0.153 Sum_probs=66.7
Q ss_pred CCCCCcEEECCCC-CCcccC----cccccCCCCCcEEECcCCCcccccccc----ccCCCCCCeeecccccccccCc---
Q psy12291 235 QLTSLKELHLGQN-YIETIP----AGSFANLQSLEKLFLYSNNIQELHAGT----FAGLTNLTALFLNNNLLRYLDT--- 302 (404)
Q Consensus 235 ~l~~L~~L~l~~~-~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~~~L~~L~l~~n~i~~~~~--- 302 (404)
.-+.|++|+++++ .+.... ...+...+.|+.|+|++|.|.+....+ +..-+.|++|+|++|+|+....
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3456666777664 554321 123445567777777777777544433 3345778888888887775433
Q ss_pred -cccCCCCCCcEEeCCCCCCcccCc-------ccccCCCCCcEEEccCCcc
Q psy12291 303 -KAFEPMLHLKKLQLDSNKLQYLAT-------DSLSLLPNLITLKLAKNPW 345 (404)
Q Consensus 303 -~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~l~l~~Np~ 345 (404)
+++..-..|++|+|++|....+.. ..+..-++|+.|+++.|..
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 445555678888887653322222 2345567888999876543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.15 E-value=0.00035 Score=56.78 Aligned_cols=114 Identities=12% Similarity=0.021 Sum_probs=69.5
Q ss_pred cCCCCCCCEEECCCC-cCCCCC----hhhhcCCCCCcEEECCCCCCcccCcc----cccCCCCCcEEECcCCCcccccc-
Q psy12291 209 FNYFKHLTFLELSEN-WISSLN----GDEFSQLTSLKELHLGQNYIETIPAG----SFANLQSLEKLFLYSNNIQELHA- 278 (404)
Q Consensus 209 ~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~- 278 (404)
+..-+.|+.|+++++ .+.... ..++..-..|+.|++++|.+.+.... .+...+.|+.|+|++|.|.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344556777777664 554322 13344556788888888877644322 23355778888888888876443
Q ss_pred ---ccccCCCCCCeeecccccc---cccC----ccccCCCCCCcEEeCCCCCCc
Q psy12291 279 ---GTFAGLTNLTALFLNNNLL---RYLD----TKAFEPMLHLKKLQLDSNKLQ 322 (404)
Q Consensus 279 ---~~~~~~~~L~~L~l~~n~i---~~~~----~~~~~~l~~L~~L~l~~n~l~ 322 (404)
.++..-+.|++|+|++|.. ..-. .+++..-+.|+.|+++.|.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 2444556788888876533 3211 234555578888888776543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=93.64 E-value=0.2 Score=35.51 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=18.0
Q ss_pred cccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECC
Q psy12291 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS 149 (404)
Q Consensus 106 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 149 (404)
+.|...+|.++.+|+.+.|..+ ++.|...+|.++.+|+.+.+.
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3344444444444444444332 334444444444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=92.79 E-value=0.27 Score=34.80 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=25.7
Q ss_pred CCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCC
Q psy12291 56 QLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN 103 (404)
Q Consensus 56 ~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 103 (404)
.++.|...+|.++.+|+.+.|..+ ++.|...+|.+|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 445555555666666666555543 45555555555555555555443
No 167
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=21.82 E-value=47 Score=17.04 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=9.3
Q ss_pred eecCCCceEEecC
Q psy12291 19 RCRPEIHTLSCWK 31 (404)
Q Consensus 19 ~c~~~~~~~~~~~ 31 (404)
.|.++.+...|.+
T Consensus 23 kcvpegkrfycrd 35 (36)
T 4b2u_A 23 KCVPEGKRFYCRD 35 (36)
T ss_dssp EEEEETTEEEEEC
T ss_pred cccccCceeeecC
Confidence 5667778888864
Done!