RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12291
(404 letters)
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 81.0 bits (200), Expect = 2e-16
Identities = 80/257 (31%), Positives = 115/257 (44%), Gaps = 10/257 (3%)
Query: 89 FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE-SLPANVFHDLISLEELD 147
+I TINLS + L +P F + L + LS N S+P + +LE LD
Sbjct: 94 YIQTINLS----NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG---SIPNLETLD 146
Query: 148 LSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPG 207
LS N+L+ SLK L L N + P +L L+FL+L +N+L P
Sbjct: 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR 206
Query: 208 LFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHL-GQNYIETIPAGSFANLQSLEKL 266
K L ++ L N +S E LTSL L L N IP+ S NL++L+ L
Sbjct: 207 ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYL 265
Query: 267 FLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT 326
FLY N + + L L +L L++N L + + +L+ L L SN
Sbjct: 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325
Query: 327 DSLSLLPNLITLKLAKN 343
+L+ LP L L+L N
Sbjct: 326 VALTSLPRLQVLQLWSN 342
Score = 55.2 bits (133), Expect = 4e-08
Identities = 85/311 (27%), Positives = 120/311 (38%), Gaps = 62/311 (19%)
Query: 43 IPVDI------RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFISTINL 95
IP DI +V+DLG N L ++ T L L L L N L ++P +L
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL------- 208
Query: 96 STMDLSQNLIKTLPSTFFKGAIR-LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLT 154
G ++ L + L YN + L SL LDL N LT
Sbjct: 209 -------------------GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249
Query: 155 SIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSF-IRPGLFNYFK 213
+P +LK L +L L N+LS I P +F+ +
Sbjct: 250 G-----------------------PIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFS-LQ 284
Query: 214 HLTFLELSENWISSLNGDEFSQLTSLKELHL-GQNYIETIPAGSFANLQSLEKLFLYSNN 272
L L+LS+N +S + QL +L+ LHL N+ IP +L L+ L L+SN
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNK 343
Query: 273 IQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLL 332
NLT L L+ N L + +L KL L SN L+ SL
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403
Query: 333 PNLITLKLAKN 343
+L ++L N
Sbjct: 404 RSLRRVRLQDN 414
Score = 53.7 bits (129), Expect = 1e-07
Identities = 90/321 (28%), Positives = 125/321 (38%), Gaps = 31/321 (9%)
Query: 50 IDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFISTINLSTMDLS------- 101
+DL N L+ + L L L L +N LS +P +F S L ++DLS
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGE 299
Query: 102 --------QNL-IKTLPSTFFKGAI--------RLTVVQLSYNAIE-SLPANV-FHDLIS 142
QNL I L S F G I RL V+QL N +P N+ H+ +
Sbjct: 300 IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN--N 357
Query: 143 LEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202
L LDLS N LT +L +L L SN + P + L + L++N S
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417
Query: 203 FIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQS 262
P F + FL++S N + + SL+ L L +N SF + +
Sbjct: 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KR 476
Query: 263 LEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQ 322
LE L L N L+ L L L+ N L L L L N+L
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536
Query: 323 YLATDSLSLLPNLITLKLAKN 343
S S +P L L L++N
Sbjct: 537 GQIPASFSEMPVLSQLDLSQN 557
Score = 52.9 bits (127), Expect = 2e-07
Identities = 75/280 (26%), Positives = 120/280 (42%), Gaps = 9/280 (3%)
Query: 22 PEIHTLSCWKQDME-ELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNH 80
P + L W E+P + ++ V+DL N L+ + L +L L N
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391
Query: 81 L-SELPGKLFISTINLSTMDLSQN-LIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFH 138
L E+P L +L + L N LPS F K + + + +S N ++ +
Sbjct: 392 LEGEIPKSLGACR-SLRRVRLQDNSFSGELPSEFTKLPL-VYFLDISNNNLQGRINSRKW 449
Query: 139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRN 198
D+ SL+ L L++N G L+ L L N+ + P L L L L
Sbjct: 450 DMPSLQMLSLARNKFFG-GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508
Query: 199 NRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE-TIPAGSF 257
N+LS P + K L L+LS N +S FS++ L +L L QN + IP +
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK-NL 567
Query: 258 ANLQSLEKLFLYSNNIQELHAGTFAGLT-NLTALFLNNNL 296
N++SL ++ + N++ T A L N +A+ N +L
Sbjct: 568 GNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607
Score = 50.6 bits (121), Expect = 1e-06
Identities = 76/262 (29%), Positives = 104/262 (39%), Gaps = 33/262 (12%)
Query: 64 AFTGLYKLTELKLRKNHLS-ELPGKLFISTINLSTMDLSQN-LIKTLPSTF------FK- 114
A T L +L L+L N S E+P L NL+ +DLS N L +P FK
Sbjct: 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385
Query: 115 ---------------GAIR-LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQY 158
GA R L V+L N+ + F L + LD+S N L
Sbjct: 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445
Query: 159 GTFSGMYSLKRLKLQSNRINQLPPGIF--DDLKYLDFLSLRNNRLSFIRPGLFNYFKHLT 216
M SL+ L L N+ P F L+ LD L N+ S P L
Sbjct: 446 SRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLD---LSRNQFSGAVPRKLGSLSELM 502
Query: 217 FLELSENWISSLNGDEFSQLTSLKELHLGQNYIE-TIPAGSFANLQSLEKLFLYSNNIQE 275
L+LSEN +S DE S L L L N + IPA SF+ + L +L L N +
Sbjct: 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA-SFSEMPVLSQLDLSQNQLSG 561
Query: 276 LHAGTFAGLTNLTALFLNNNLL 297
+ +L + +++N L
Sbjct: 562 EIPKNLGNVESLVQVNISHNHL 583
Score = 36.7 bits (85), Expect = 0.020
Identities = 60/212 (28%), Positives = 84/212 (39%), Gaps = 48/212 (22%)
Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPG-LFNYFKHLTFLELSENWISS---------- 227
++ IF L Y+ ++L NN+LS P +F L +L LS N +
Sbjct: 84 KISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNL 142
Query: 228 ---------LNGD---EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE 275
L+G+ + +SLK L LG N + S NL SLE L L SN +
Sbjct: 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG 202
Query: 276 LHAGTFAGLTNLTALFLN-NNL-------------LRYLD------TKAFEPML-HLKKL 314
+ +L ++L NNL L +LD T L +LK L
Sbjct: 203 QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262
Query: 315 Q---LDSNKLQYLATDSLSLLPNLITLKLAKN 343
Q L NKL S+ L LI+L L+ N
Sbjct: 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 71.5 bits (175), Expect = 1e-13
Identities = 71/260 (27%), Positives = 114/260 (43%), Gaps = 15/260 (5%)
Query: 70 KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAI 129
LT L L N+++++P + + NL +DLS N I++LPS + L + LS+N +
Sbjct: 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDL 175
Query: 130 ESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLK 189
LP + +L +L LDLS N ++ + + +L+ L L +N I +L + +LK
Sbjct: 176 SDLPK-LLSNLSNLNNLDLSGNKISDLP-PEIELLSALEELDLSNNSIIELLSSLS-NLK 232
Query: 190 YLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYI 249
L L L NN+L + P +L L+LS N ISS+ LT+L+EL L N +
Sbjct: 233 NLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSI--SSLGSLTNLRELDLSGNSL 289
Query: 250 ETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPML 309
L LE L N + L A + L + +N L
Sbjct: 290 SNALPLIALLLLLLELL---LNLLLTLKALELKLNSILLNNNILSNGETSSPE-----AL 341
Query: 310 HLKKLQLDSNKLQYLATDSL 329
+ + + L +S
Sbjct: 342 SILESLNNLWTLDNALDESN 361
Score = 51.1 bits (122), Expect = 4e-07
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 5/158 (3%)
Query: 187 DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQ 246
+L L L L NRL L +LT L+L N I+ + ++LKEL L
Sbjct: 91 NLLPLPSLDLNLNRLRSNISELLE-LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149
Query: 247 NYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFE 306
N IE++P NL +L+ L L N++ +L + L+NL L L+ N + L +
Sbjct: 150 NKIESLP-SPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKISDLPPEIEL 207
Query: 307 PMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
L++L L +N + SLS L NL L+L+ N
Sbjct: 208 L-SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK 243
Score = 30.7 bits (69), Expect = 1.6
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Query: 234 SQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTF-AGLTNLTALFL 292
S L+ L L L + GS L L L N + + LTNLT+L L
Sbjct: 64 SSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDL 123
Query: 293 NNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW 345
+NN + + +LK+L L NK++ L + L LPNL L L+ N
Sbjct: 124 DNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDL 175
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 62.6 bits (153), Expect = 8e-13
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 238 SLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLL 297
+LK L L N + IP G+F L +L+ L L NN+ + F+GL +L +L L+ N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 56.4 bits (137), Expect = 1e-10
Identities = 25/60 (41%), Positives = 33/60 (55%)
Query: 118 RLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRI 177
L + LS N + +P F L +L+ LDLS N LTSI FSG+ SL+ L L N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 56.4 bits (137), Expect = 1e-10
Identities = 25/60 (41%), Positives = 31/60 (51%)
Query: 142 SLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
+L+ LDLS N LT I G F G+ +LK L L N + + P F L L L L N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 56.0 bits (136), Expect = 2e-10
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 214 HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNI 273
+L L+LS N ++ + F L +LK L L N + +I +F+ L SL L L NN+
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 54.5 bits (132), Expect = 6e-10
Identities = 26/60 (43%), Positives = 33/60 (55%)
Query: 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL 153
NL ++DLS N + +P FKG L V+ LS N + S+ F L SL LDLS N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 48.3 bits (116), Expect = 8e-08
Identities = 23/58 (39%), Positives = 30/58 (51%)
Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
+LK L L +NR+ +P G F L L L L N L+ I P F+ L L+LS N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58
Score = 46.4 bits (111), Expect = 4e-07
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
++ +DL N+L+ + AF GL L L L N+L+ + + F +L ++DLS N +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 44.8 bits (107), Expect = 1e-06
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 286 NLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
NL +L L+NN L + AF+ + +LK L L N L ++ ++ S LP+L +L L+ N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59
>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies). This family
includes a number of leucine rich repeats. This family
contains a large number of BSPA-like surface antigens
from Trichomonas vaginalis.
Length = 128
Score = 51.4 bits (124), Expect = 4e-08
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 130 ESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDD-- 187
S+ F++ SL + + +V TSI FSG SLK + L S+ + + F +
Sbjct: 1 TSIGDYAFYNC-SLTSITIPSSV-TSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCS 57
Query: 188 -LKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQ 246
L + + L+ I F+ LT + + N ++++ FS SLK + +
Sbjct: 58 SLTSITI----PSSLTSIGEYAFSNCSSLTSITIPSN-LTTIGSYAFSN-CSLKSITIPS 111
Query: 247 NYIETIPAGSFANLQSLE 264
+ + TI +F+N SL+
Sbjct: 112 S-VTTIGDYAFSNCSSLK 128
Score = 48.7 bits (117), Expect = 3e-07
Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 204 IRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSL 263
I F LT + + + ++S+ FS TSLK + L + + +I + +F N SL
Sbjct: 3 IGDYAFYNCS-LTSITIPSS-VTSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCSSL 59
Query: 264 EKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFE 306
+ + +++ + F+ ++LT++ + +N L + + AF
Sbjct: 60 TSITI-PSSLTSIGEYAFSNCSSLTSITIPSN-LTTIGSYAFS 100
Score = 46.0 bits (110), Expect = 2e-06
Identities = 23/114 (20%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 55 NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFK 114
+ ++++ + AF+G L + L + L+ + F + +L+++ + + + ++ F
Sbjct: 20 SSVTSIGEYAFSGCTSLKSITL-PSSLTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFS 77
Query: 115 GAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK 168
LT + + N + ++ + F + SL+ + + +V T+I FS SLK
Sbjct: 78 NCSSLTSITIPSN-LTTIGSYAFSN-CSLKSITIPSSV-TTIGDYAFSNCSSLK 128
Score = 36.7 bits (86), Expect = 0.004
Identities = 16/83 (19%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNL 296
SL + + + + +I +F+ SL+ + L +++ + + F ++LT++ + ++
Sbjct: 11 CSLTSITIPSS-VTSIGEYAFSGCTSLKSITL-PSSLTSIGSYAFYNCSSLTSITIPSS- 67
Query: 297 LRYLDTKAFEPMLHLKKLQLDSN 319
L + AF L + + SN
Sbjct: 68 LTSIGEYAFSNCSSLTSITIPSN 90
>gnl|CDD|214507 smart00082, LRRCT, Leucine rich repeat C-terminal domain.
Length = 51
Score = 48.2 bits (115), Expect = 8e-08
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 343 NPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDLC 392
NP+ CDC + ++ RWL+AN C P +L G +E + + C
Sbjct: 1 NPFICDCELRWLLRWLQANEHLQDPVDLRCASPSSLRGPLLELLHSEFKC 50
>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein. The Polycystin
Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a
huge protein of 4303aas. Its repeated leucine-rich (LRR)
segment is found in many proteins. It contains 16
polycystic kidney disease (PKD) domains, one
LDL-receptor class A domain, one C-type lectin family
domain, and 16-18 putative TMSs in positions between
residues 2200 and 4100. Polycystin-L has been shown to
be a cation (Na+, K+ and Ca2+) channel that is activated
by Ca2+. Two members of the PCC family (polycystin 1 and
2) are mutated in autosomal dominant polycystic kidney
disease, and polycystin-L is deleted in mice with renal
and retinal defects. Note: this model is restricted to
the amino half for technical reasons.
Length = 2740
Score = 47.8 bits (113), Expect = 8e-06
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 316 LDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPT-CRG 374
+ +NK+ + + L NL + L+ NP+ CDC + + RW KV + C G
Sbjct: 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAG 61
Query: 375 PGNLGGKSVEDMS-FDDLCEGQWASMVK 401
PG L G+ + + D C+ ++ + +K
Sbjct: 62 PGALAGQPLLGIPLLDSGCDEEYVACLK 89
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 45.4 bits (108), Expect = 2e-05
Identities = 63/247 (25%), Positives = 85/247 (34%), Gaps = 35/247 (14%)
Query: 119 LTVVQLSYNAIE----SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK------ 168
L V++L N + A+ SL+EL LS N I G S + L
Sbjct: 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ 84
Query: 169 RLKLQSNRINQLPPGIFDDL---KYLDFLSLRNNRLS-----FIRPGLFNYFKHLTFLEL 220
L L N + G+ + L L L L NN L + GL + L L L
Sbjct: 85 ELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144
Query: 221 SENWISSLN----GDEFSQLTSLKELHLGQNYI--ETIP--AGSFANLQSLEKLFLYSNN 272
N + + LKEL+L N I I A +LE L L +N
Sbjct: 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204
Query: 273 IQELH----AGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLH-----LKKLQLDSNKLQY 323
+ + A T A L +L L L +N L A L L L L N +
Sbjct: 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264
Query: 324 LATDSLS 330
L+
Sbjct: 265 DGAKDLA 271
Score = 43.9 bits (104), Expect = 8e-05
Identities = 56/240 (23%), Positives = 86/240 (35%), Gaps = 47/240 (19%)
Query: 71 LTELKLRKNHLSELP------GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIR---LTV 121
L EL L N +P + L +DLS N + + +R L
Sbjct: 53 LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQE 112
Query: 122 VQLSYNAIESLP----ANVFHDLI-SLEELDLSQNVLTSIQY----GTFSGMYSLKRLKL 172
++L+ N + A DL +LE+L L +N L LK L L
Sbjct: 113 LKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172
Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNG-- 230
+N I GI + L L+ N +L L+L+ N ++
Sbjct: 173 ANNGIG--DAGI----RAL-AEGLKAN-------------CNLEVLDLNNNGLTDEGASA 212
Query: 231 --DEFSQLTSLKELHLGQNYIETIPAGSFAN-----LQSLEKLFLYSNNIQELHAGTFAG 283
+ + L SL+ L+LG N + A + A+ SL L L N+I + A A
Sbjct: 213 LAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE 272
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 37.1 bits (87), Expect = 5e-04
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 213 KHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA 254
+L L+LS N I+ L S L +L+ L L N I +
Sbjct: 1 TNLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDLSP 40
Score = 34.8 bits (81), Expect = 0.004
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
T+L+ L L N I +P +NL +LE L L N I +L
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDL 38
Score = 32.5 bits (75), Expect = 0.023
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 261 QSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLD 301
+LE L L +N I +L + L NL L L+ N + L
Sbjct: 1 TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLS 39
Score = 32.5 bits (75), Expect = 0.026
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 118 RLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI 156
L + LS N I LP +L +LE LDLS N +T +
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDL 38
Score = 30.5 bits (70), Expect = 0.12
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRP 206
+L+ L L +N+I LPP +L L+ L L N+++ + P
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 30.2 bits (69), Expect = 0.16
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 142 SLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPP 182
+LE LDLS N +T + S + +L+ L L N+I L P
Sbjct: 2 NLETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLSP 40
Score = 26.7 bits (60), Expect = 2.7
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPA 134
NL T+DLS N I LP L + LS N I L
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 26.3 bits (59), Expect = 3.7
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 191 LDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNG 230
L+ L L NN+++ + P + +L L+LS N I+ L+
Sbjct: 3 LETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 26.3 bits (59), Expect = 3.9
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 70 KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPS 110
L L L N +++LP + NL T+DLS N I L
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 26.3 bits (59), Expect = 4.0
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 310 HLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
+L+ L L +N++ L LS LPNL TL L+ N
Sbjct: 2 NLETLDLSNNQITDL--PPLSNLPNLETLDLSGNK 34
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 40.1 bits (93), Expect = 0.002
Identities = 60/245 (24%), Positives = 106/245 (43%), Gaps = 41/245 (16%)
Query: 72 TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
TEL+L+ L+ +P + ++T+ L N +K+LP L N + S
Sbjct: 181 TELRLKILGLTTIPACI---PEQITTLILDNNELKSLPENLQGNIKTLYANS---NQLTS 234
Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYL 191
+PA + +++E++LS N +T + S +L+ L L N+I+ LP + ++L+YL
Sbjct: 235 IPATLPD---TIQEMELSINRITELPERLPS---ALQSLDLFHNKISCLPENLPEELRYL 288
Query: 192 DF------------------LSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEF 233
L++++N L+ + L L LE EN ++SL
Sbjct: 289 SVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL---PPGLKTLEAGENALTSLPA--- 342
Query: 234 SQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLN 293
S L+ L + +N I +P + + L + N + L A L + A
Sbjct: 343 SLPPELQVLDVSKNQITVLPETLPPTITT---LDVSRNALTNLPENLPAALQIMQASR-- 397
Query: 294 NNLLR 298
NNL+R
Sbjct: 398 NNLVR 402
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 35.9 bits (83), Expect = 0.033
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTA 289
++ S+L L+ ++L N I S ++ SLE L L N+ + LT+L
Sbjct: 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494
Query: 290 LFLNNNLL 297
L LN N L
Sbjct: 495 LNLNGNSL 502
Score = 35.2 bits (81), Expect = 0.064
Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 185 FDDLK---YLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE 241
FD K ++D L L N L P + +HL + LS N I +TSL+
Sbjct: 411 FDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV 470
Query: 242 LHLGQNYIE-TIPAGSFANLQSLEKLFLYSN 271
L L N +IP S L SL L L N
Sbjct: 471 LDLSYNSFNGSIPE-SLGQLTSLRILNLNGN 500
Score = 34.8 bits (80), Expect = 0.073
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEE 145
GK FI + L +Q L +P+ K L + LS N+I + SLE
Sbjct: 416 GKWFIDGLGLD----NQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEV 470
Query: 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPG 183
LDLS N + + SL+ L L N ++ P
Sbjct: 471 LDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508
Score = 34.8 bits (80), Expect = 0.089
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 188 LKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQN 247
L++L ++L N + P L L+LS N + + QLTSL+ L+L N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500
Query: 248 YI 249
+
Sbjct: 501 SL 502
Score = 32.5 bits (74), Expect = 0.50
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 143 LEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202
L+ ++LS N + + + SL+ L L N N P L L L+L N LS
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 30.4 bits (70), Expect = 0.088
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 236 LTSLKELHLGQNYIETIPAGSFAN 259
L +L+EL L N + ++P G+F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 30.0 bits (69), Expect = 0.12
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 260 LQSLEKLFLYSNNIQELHAGTFAG 283
L +L +L L +N + L G F G
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 29.6 bits (68), Expect = 0.17
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 164 MYSLKRLKLQSNRINQLPPGIFDD 187
+ +L+ L L +N+++ LPPG F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 28.1 bits (64), Expect = 0.49
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 140 LISLEELDLSQNVLTSIQYGTFSG 163
L +L ELDLS N L+S+ G F G
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 26.9 bits (61), Expect = 1.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 284 LTNLTALFLNNNLLRYLDTKAFEP 307
L NL L L+NN L L AF+
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 25.4 bits (57), Expect = 5.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 68 LYKLTELKLRKNHLSELPGKLF 89
L L EL L N LS LP F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAF 22
Score = 25.0 bits (56), Expect = 6.3
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 119 LTVVQLSYNAIESLPANVFHD 139
L + LS N + SLP F
Sbjct: 4 LRELDLSNNQLSSLPPGAFQG 24
Score = 25.0 bits (56), Expect = 6.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 191 LDFLSLRNNRLSFIRPGLFN 210
L L L NN+LS + PG F
Sbjct: 4 LRELDLSNNQLSSLPPGAFQ 23
Score = 25.0 bits (56), Expect = 7.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 94 NLSTMDLSQNLIKTLPSTFFKG 115
NL +DLS N + +LP F+G
Sbjct: 3 NLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 30.4 bits (70), Expect = 0.088
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 236 LTSLKELHLGQNYIETIPAGSFAN 259
L +L+EL L N + ++P G+F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 30.0 bits (69), Expect = 0.12
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 260 LQSLEKLFLYSNNIQELHAGTFAG 283
L +L +L L +N + L G F G
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 29.6 bits (68), Expect = 0.17
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 164 MYSLKRLKLQSNRINQLPPGIFDD 187
+ +L+ L L +N+++ LPPG F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 28.1 bits (64), Expect = 0.49
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 140 LISLEELDLSQNVLTSIQYGTFSG 163
L +L ELDLS N L+S+ G F G
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 26.9 bits (61), Expect = 1.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 284 LTNLTALFLNNNLLRYLDTKAFEP 307
L NL L L+NN L L AF+
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAFQG 24
Score = 25.4 bits (57), Expect = 5.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 68 LYKLTELKLRKNHLSELPGKLF 89
L L EL L N LS LP F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAF 22
Score = 25.0 bits (56), Expect = 6.3
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 119 LTVVQLSYNAIESLPANVFHD 139
L + LS N + SLP F
Sbjct: 4 LRELDLSNNQLSSLPPGAFQG 24
Score = 25.0 bits (56), Expect = 6.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 191 LDFLSLRNNRLSFIRPGLFN 210
L L L NN+LS + PG F
Sbjct: 4 LRELDLSNNQLSSLPPGAFQ 23
Score = 25.0 bits (56), Expect = 7.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 94 NLSTMDLSQNLIKTLPSTFFKG 115
NL +DLS N + +LP F+G
Sbjct: 3 NLRELDLSNNQLSSLPPGAFQG 24
>gnl|CDD|214393 CHL00198, accA, acetyl-CoA carboxylase carboxyltransferase alpha
subunit; Provisional.
Length = 322
Score = 29.4 bits (66), Expect = 3.3
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 138 HDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKL--QSNRINQLP--PGIFDD 187
+D + +L Q L ++ F + L+RL L QS R L P I D+
Sbjct: 32 NDKVINNKLKSFQRKLRILKKEIFYSLTPLQRLHLVRQSERPTTLDYIPYILDE 85
>gnl|CDD|180286 PRK05848, PRK05848, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 273
Score = 28.5 bits (64), Expect = 6.1
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 255 GSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPML 309
G F+ L +E+ L N +Q H+ A LT+ L ++ ++ LDT+ P+L
Sbjct: 81 GDFSMLLKVERTLL--NLLQ--HSSGIATLTSRYVEALESHKVKLLDTRKTRPLL 131
>gnl|CDD|139245 PRK12812, flgD, flagellar basal body rod modification protein;
Reviewed.
Length = 259
Score = 28.3 bits (63), Expect = 6.9
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 53 GINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTL 108
G N S L KDAF L L EL+ + K+ T L+ +++ +N T+
Sbjct: 37 GSNPNSQLDKDAFLKLL-LIELQHQDPTDPMDSDKMLTQTSQLAALEMQENTNTTM 91
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 28.8 bits (64), Expect = 7.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 298 RYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW 345
RYLDT F+ + +L S + L+T +SL+P T + W
Sbjct: 3330 RYLDTFPFKYCIISGVDELSSTFIMALSTLIMSLVPVRNTPTTLRLMW 3377
>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases.
Protein Tyrosine Kinase (PTK) family, catalytic domain.
This PTKc family is part of a larger superfamily that
includes the catalytic domains of protein
serine/threonine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. They can be classified
into receptor and non-receptor tyr kinases. PTKs play
important roles in many cellular processes including,
lymphocyte activation, epithelium growth and
maintenance, metabolism control, organogenesis
regulation, survival, proliferation, differentiation,
migration, adhesion, motility, and morphogenesis.
Receptor tyr kinases (RTKs) are integral membrane
proteins which contain an extracellular ligand-binding
region, a transmembrane segment, and an intracellular
tyr kinase domain. RTKs are usually activated through
ligand binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain, leading to intracellular signaling.
Some RTKs are orphan receptors with no known ligands.
Non-receptor (or cytoplasmic) tyr kinases are
distributed in different intracellular compartments and
are usually multi-domain proteins containing a catalytic
tyr kinase domain as well as various regulatory domains
such as SH3 and SH2. PTKs are usually autoinhibited and
require a mechanism for activation. In many PTKs, the
phosphorylation of tyr residues in the activation loop
is essential for optimal activity. Aberrant expression
of PTKs is associated with many development
abnormalities and cancers.
Length = 262
Score = 27.9 bits (63), Expect = 8.8
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 20 CRPEIHTL--SCWKQDMEELP-FDQII 43
C E++ L SCW+ D E+ P F +++
Sbjct: 232 CPDELYELMLSCWQLDPEDRPTFSELV 258
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.415
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,216,755
Number of extensions: 1935776
Number of successful extensions: 1680
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1582
Number of HSP's successfully gapped: 82
Length of query: 404
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 305
Effective length of database: 6,546,556
Effective search space: 1996699580
Effective search space used: 1996699580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.5 bits)