RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12291
(404 letters)
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 341 bits (876), Expect = e-114
Identities = 106/380 (27%), Positives = 166/380 (43%), Gaps = 4/380 (1%)
Query: 14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTE 73
C C C + + C ++ +P IP + R++DLG N++ TL++D F L E
Sbjct: 3 CPPRCECSAQDRAVLCHRKRFVAVPEG--IPTETRLLDLGKNRIKTLNQDEFASFPHLEE 60
Query: 74 LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP 133
L+L +N +S + F + NL T+ L N +K +P F G LT + +S N I L
Sbjct: 61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120
Query: 134 ANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF 193
+F DL +L+ L++ N L I + FSG+ SL++L L+ + +P L L
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180
Query: 194 LSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIP 253
L LR+ ++ IR F L LE+S +L L + + +P
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240
Query: 254 AGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKK 313
+ +L L L L N I + L L + L L ++ AF + +L+
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300
Query: 314 LQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCR 373
L + N+L L + NL TL L NP CDC +L++ R +PTC
Sbjct: 301 LNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFN--RQQPTCA 358
Query: 374 GPGNLGGKSVEDMSFDDLCE 393
P + GK +D L
Sbjct: 359 TPEFVQGKEFKDFPDVLLPN 378
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 279 bits (715), Expect = 2e-90
Identities = 90/302 (29%), Positives = 144/302 (47%), Gaps = 7/302 (2%)
Query: 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL 153
S + ++ + +P + L N I+ + A+ F L LE L L +N +
Sbjct: 55 QFSKVVCTRRGLSEVPQGIPS---NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK 213
I+ G F+G+ SL L+L N + +P G F+ L L L LRNN + I FN
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171
Query: 214 HLTFLELSE-NWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNN 272
L L+L E + ++ F L +LK L+LG I+ +P L LE+L + N+
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNH 229
Query: 273 IQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLL 332
E+ G+F GL++L L++ N+ + ++ AF+ + L +L L N L L D + L
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289
Query: 333 PNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL- 391
L+ L L NPW+CDC IL++A WLR C P ++ G+ + ++
Sbjct: 290 RYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQ 349
Query: 392 CE 393
C
Sbjct: 350 CS 351
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 278 bits (713), Expect = 3e-90
Identities = 84/302 (27%), Positives = 146/302 (48%), Gaps = 7/302 (2%)
Query: 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL 153
S + + ++ +P ++ L N I+ + N F L LE L LS+N +
Sbjct: 44 QFSKVICVRKNLREVPDGIST---NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100
Query: 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK 213
+I+ G F+G+ +L L+L NR+ +P G F L L L LRNN + I FN
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160
Query: 214 HLTFLELSE-NWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNN 272
L L+L E +S ++ F L++L+ L+L + IP L L++L L N+
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNH 218
Query: 273 IQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLL 332
+ + G+F GL +L L++ + ++ ++ AF+ + L ++ L N L L D + L
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278
Query: 333 PNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL- 391
+L + L NPW+C+C IL+++ W++ C P NL G+ + ++ +
Sbjct: 279 HHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFT 338
Query: 392 CE 393
C
Sbjct: 339 CY 340
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 254 bits (652), Expect = 4e-83
Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 6/273 (2%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
++++P + + + L N ++ + +F +L L L SN + +
Sbjct: 14 VTTSCPQQGLQAVPVGIPAAS---QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70
Query: 180 LPPGIFDDLKYLDFLSL-RNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
+ F L L+ L L N +L + P F+ L L L + L F L +
Sbjct: 71 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130
Query: 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLR 298
L+ L+L N ++ +P +F +L +L LFL+ N I + F GL +L L L+ N +
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Query: 299 YLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWL 358
++ AF + L L L +N L L T++L+ L L L+L NPW CDC + WL
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250
Query: 359 RANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL 391
+ R S+ C P L G+ ++ ++ +DL
Sbjct: 251 QKFRGSS--SEVPCSLPQRLAGRDLKRLAANDL 281
Score = 192 bits (491), Expect = 5e-59
Identities = 72/236 (30%), Positives = 109/236 (46%), Gaps = 4/236 (1%)
Query: 14 CEGPCRCRPE-IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLT 72
C G C C E T SC +Q ++ +P IP + I L N++S + +F LT
Sbjct: 2 CPGACVCYNEPKVTTSCPQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLT 59
Query: 73 ELKLRKNHLSELPGKLFISTINLSTMDLSQNL-IKTLPSTFFKGAIRLTVVQLSYNAIES 131
L L N L+ + F L +DLS N ++++ F G RL + L ++
Sbjct: 60 ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119
Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYL 191
L +F L +L+ L L N L ++ TF + +L L L NRI+ +P F L L
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179
Query: 192 DFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQN 247
D L L NR++ + P F L L L N +S+L + + L +L+ L L N
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 247 bits (633), Expect = 7e-79
Identities = 83/359 (23%), Positives = 142/359 (39%), Gaps = 29/359 (8%)
Query: 37 LPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLS 96
F+ I + +++ + + L ++ L L + E+ F +
Sbjct: 37 FGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96
Query: 97 TMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI 156
+ + N I+ LP F+ LTV+ L N + SLP +FH+ L L +S N L I
Sbjct: 97 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156
Query: 157 QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF----------------LSLRNNR 200
+ TF SL+ L+L SNR+ + + L + + L +N
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS 216
Query: 201 LSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL 260
++ +R + LT L+L N ++ L E+ L N +E I F +
Sbjct: 217 INVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271
Query: 261 QSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNK 320
Q LE+L++ +N + L+ + L L L++N L +++ + L+ L LD N
Sbjct: 272 QRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNS 329
Query: 321 LQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLG 379
+ L LS L L L+ N W C+ R V D+ C+ L
Sbjct: 330 IVTL---KLSTHHTLKNLTLSHNDWDCNSLRALFRNV---ARPAVDDADQHCKIDYQLE 382
Score = 176 bits (448), Expect = 1e-51
Identities = 55/260 (21%), Positives = 98/260 (37%), Gaps = 21/260 (8%)
Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYG 159
+ +V + + LPA + +E L+L+ + I
Sbjct: 28 IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY 87
Query: 160 TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLE 219
F+ +++++L + N I LPP +F ++ L L L N LS + G+F+ LT L
Sbjct: 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147
Query: 220 LSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ----------------SL 263
+S N + + D F TSL+ L L N + + +L ++
Sbjct: 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 207
Query: 264 EKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQY 323
E+L N+I + LT L L +N L L ++ L N+L+
Sbjct: 208 EELDASHNSINVVRGPVN---VELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEK 262
Query: 324 LATDSLSLLPNLITLKLAKN 343
+ + L L ++ N
Sbjct: 263 IMYHPFVKMQRLERLYISNN 282
Score = 163 bits (414), Expect = 1e-46
Identities = 47/262 (17%), Positives = 86/262 (32%), Gaps = 26/262 (9%)
Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFH-----DLISLEELDLSQNVLTSIQ 157
N+ P + I+ +V+ L + + + + + +
Sbjct: 2 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 61
Query: 158 YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTF 217
++ L L +I ++ F + L + N + ++ P +F LT
Sbjct: 62 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121
Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
L L N +SSL F L L + N +E I +F SL+ L L SN + +
Sbjct: 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181
Query: 278 AGTFAGL----------------TNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKL 321
L + L ++N + + + L L+L N L
Sbjct: 182 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNL 238
Query: 322 QYLATDSLSLLPNLITLKLAKN 343
L P L+ + L+ N
Sbjct: 239 TDT--AWLLNYPGLVEVDLSYN 258
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 247 bits (632), Expect = 5e-78
Identities = 97/359 (27%), Positives = 148/359 (41%), Gaps = 30/359 (8%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSE--LPGKLFISTINLSTMDLSQNL 104
+ ++ L NQ L AF GL L L L + +L L G F +L + L N
Sbjct: 81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140
Query: 105 IKTL-PSTFFKGAIRLTVVQLSYNAIESLPANVFHDLIS--LEELDLSQNVLTSI----- 156
IK + P++FF R V+ L++N ++S+ + L LS L +
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200
Query: 157 ---QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFL-------------SLRNNR 200
+ G S+ L L N + F D + S +
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260
Query: 201 LSFIRPGLFNYFK--HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA 258
F + + +LS++ I +L FS T L++L L QN I I +F
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320
Query: 259 NLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDS 318
L L KL L N + + + F L L L L+ N +R L ++F + +LK+L LD+
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 319 NKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGPG 376
N+L+ + L +L + L NPW C C I Y++RWL N +K S C G G
Sbjct: 381 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS-AKCSGSG 438
Score = 120 bits (302), Expect = 2e-30
Identities = 43/141 (30%), Positives = 60/141 (42%), Gaps = 4/141 (2%)
Query: 214 HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIET-IPAGSFANLQSLEKLFLYSNN 272
H+ +++LS N I+ LN FS+L L+ L + Q I +F L SL L L N
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 273 IQELHAGTFAGLTNLTALFLNNNLLR--YLDTKAFEPMLHLKKLQLDSNKLQYLATDSL- 329
+L G F GL NL L L L L F+P+ L+ L L N ++ + S
Sbjct: 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150
Query: 330 SLLPNLITLKLAKNPWHCDCA 350
+ L L N C
Sbjct: 151 LNMRRFHVLDLTFNKVKSICE 171
Score = 118 bits (298), Expect = 9e-30
Identities = 42/144 (29%), Positives = 75/144 (52%)
Query: 32 QDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIS 91
+D + F + ++ DL +++ L K F+ L +L L +N ++++ F
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321
Query: 92 TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN 151
+L ++LSQN + ++ S F+ +L V+ LSYN I +L F L +L+EL L N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 152 VLTSIQYGTFSGMYSLKRLKLQSN 175
L S+ G F + SL+++ L +N
Sbjct: 382 QLKSVPDGIFDRLTSLQKIWLHTN 405
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 243 bits (622), Expect = 5e-78
Identities = 79/314 (25%), Positives = 146/314 (46%), Gaps = 19/314 (6%)
Query: 17 PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKL 76
P RC+ + + C +E++P D +P D ++DL N+++ + F L L L L
Sbjct: 26 PFRCQCHLRVVQCSDLGLEKVPKD--LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLIL 83
Query: 77 RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
N +S++ F + L + LS+N +K LP K L +++ N I + +V
Sbjct: 84 INNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEITKVRKSV 140
Query: 137 FHDLISLEELDLSQNVLTS--IQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFL 194
F+ L + ++L N L S I+ G F GM L +++ I +P G+ L L
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH-- 198
Query: 195 SLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA 254
L N+++ + +L L LS N IS+++ + L+ELHL N + +P
Sbjct: 199 -LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257
Query: 255 GSFANLQSLEKLFLYSNNIQELHAGTFA------GLTNLTALFLNNNLLRY--LDTKAFE 306
G A+ + ++ ++L++NNI + + F + + + L +N ++Y + F
Sbjct: 258 G-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316
Query: 307 PMLHLKKLQLDSNK 320
+ +QL + K
Sbjct: 317 CVYVRAAVQLGNYK 330
Score = 202 bits (516), Expect = 3e-62
Identities = 64/253 (25%), Positives = 111/253 (43%), Gaps = 12/253 (4%)
Query: 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL 153
+L + S ++ +P L L N I + F +L +L L L N +
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK 213
+ I G F+ + L+RL L N++ +LP + L+ L + N ++ +R +FN
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNGLN 145
Query: 214 HLTFLELSENWISS--LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
+ +EL N + S + F + L + + I TIP G +L +L L N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGN 202
Query: 272 NIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSL 331
I ++ A + GL NL L L+ N + +D + HL++L L++NKL + L+
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLAD 261
Query: 332 LPNLITLKLAKNP 344
+ + L N
Sbjct: 262 HKYIQVVYLHNNN 274
Score = 157 bits (400), Expect = 5e-45
Identities = 57/231 (24%), Positives = 96/231 (41%), Gaps = 35/231 (15%)
Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
L VVQ S +E +P ++ D LDL N +T I+ G F + +L L L +N+I+
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
++ PG F L L+ L L N+L + + +
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLKELPEKMP---------------------------KT 122
Query: 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE--LHAGTFAGLTNLTALFLNNNL 296
L+EL + +N I + F L + + L +N ++ + G F G+ L+ + + +
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182
Query: 297 LRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHC 347
+ + L +L LD NK+ + SL L NL L L+ N
Sbjct: 183 ITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 239 bits (613), Expect = 5e-77
Identities = 71/322 (22%), Positives = 132/322 (40%), Gaps = 32/322 (9%)
Query: 72 TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE- 130
TE++ L+ +P + S L +L N +++LP F +LT + LS N +
Sbjct: 10 TEIRCNSKGLTSVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66
Query: 131 -SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPP-GIFDDL 188
+ SL+ LDLS N + ++ F G+ L+ L Q + + Q+ +F L
Sbjct: 67 KGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125
Query: 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN-WISSLNGDEFSQLTSLKELHLGQN 247
+ L +L + + G+FN L L+++ N + + D F++L +L L L Q
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185
Query: 248 YIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEP 307
+E + +F +L SL+ L + NN L + L +L L + N + + +
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245
Query: 308 MLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWD 367
+L L L +N + C C +W++ R+ + +
Sbjct: 246 -----------------------FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 282
Query: 368 -SKPTCRGPGNLGGKSVEDMSF 388
+ C P + G V ++
Sbjct: 283 VERMECATPSDKQGMPVLSLNI 304
Score = 84.3 bits (209), Expect = 2e-18
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 48 RVIDLGINQ-LSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
V+ + N D FT L LT L L + L +L F S +L +++S N
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLI-SLEELDLSQN 151
+L + +K L V+ S N I + SL L+L+QN
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 245 bits (627), Expect = 8e-76
Identities = 82/363 (22%), Positives = 140/363 (38%), Gaps = 29/363 (7%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
+++ + + L ++ L L + E+ F + + + N I+
Sbjct: 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
LP F+ LTV+ L N + SLP +FH+ L L +S N L I+ TF S
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDF----------------LSLRNNRLSFIRPGLFN 210
L+ L+L SNR+ + + L + + L +N ++ +R +
Sbjct: 173 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV-- 230
Query: 211 YFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYS 270
LT L+L N ++ L E+ L N +E I F +Q LE+L++ +
Sbjct: 231 -NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287
Query: 271 NNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLS 330
N + L+ + L L L++N L +++ + L+ L LD N + L LS
Sbjct: 288 NRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIVTL---KLS 342
Query: 331 LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDD 390
L L L+ N W C+ R V D+ C+ L S
Sbjct: 343 THHTLKNLTLSHNDWDCNSLRALFRNVA---RPAVDDADQHCKIDYQLEHGLCCKESDKP 399
Query: 391 LCE 393
+
Sbjct: 400 YLD 402
Score = 194 bits (494), Expect = 2e-56
Identities = 61/310 (19%), Positives = 113/310 (36%), Gaps = 27/310 (8%)
Query: 55 NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLF-----ISTINLSTMDLSQNLIKTLP 109
N + + H+ ++ I+ N + + ++ LP
Sbjct: 8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 67
Query: 110 STFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKR 169
+ ++ ++ L+ IE + F ++++L + N + + F + L
Sbjct: 68 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127
Query: 170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229
L L+ N ++ LP GIF + L LS+ NN L I F L L+LS N ++ ++
Sbjct: 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187
Query: 230 GDEFSQLT----------------SLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNI 273
L +++EL N I + L L+ L NN+
Sbjct: 188 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHNNL 244
Query: 274 QELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLP 333
+ L + L+ N L + F M L++L + +N+L L +P
Sbjct: 245 TDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIP 301
Query: 334 NLITLKLAKN 343
L L L+ N
Sbjct: 302 TLKVLDLSHN 311
Score = 166 bits (421), Expect = 4e-46
Identities = 47/265 (17%), Positives = 86/265 (32%), Gaps = 26/265 (9%)
Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFH-----DLISLEELDLSQNVLT 154
N+ P + I+ +V+ L + + + + +
Sbjct: 5 QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64
Query: 155 SIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKH 214
+ ++ L L +I ++ F + L + N + ++ P +F
Sbjct: 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124
Query: 215 LTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQ 274
LT L L N +SSL F L L + N +E I +F SL+ L L SN +
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
Query: 275 ELHAGTFAGLT----------------NLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDS 318
+ L + L ++N + + + L L+L
Sbjct: 185 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN---VELTILKLQH 241
Query: 319 NKLQYLATDSLSLLPNLITLKLAKN 343
N L L P L+ + L+ N
Sbjct: 242 NNLTDT--AWLLNYPGLVEVDLSYN 264
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 233 bits (597), Expect = 3e-74
Identities = 77/314 (24%), Positives = 138/314 (43%), Gaps = 20/314 (6%)
Query: 17 PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKL 76
P C + + C ++ +P + I D ++DL N +S L KD F GL L L L
Sbjct: 28 PFGCHCHLRVVQCSDLGLKAVPKE--ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVL 85
Query: 77 RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
N +S++ K F L + +S+N + +P L +++ N I +P V
Sbjct: 86 VNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS---LVELRIHDNRIRKVPKGV 142
Query: 137 FHDLISLEELDLSQNVLTS--IQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFL 194
F L ++ +++ N L + + G F G+ L L++ ++ +P + + L L
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELH-- 199
Query: 195 SLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA 254
L +N++ I + L L L N I + S L +L+ELHL N + +PA
Sbjct: 200 -LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258
Query: 255 GSFANLQSLEKLFLYSNNIQELHAGTFAGL------TNLTALFLNNNLLRY--LDTKAFE 306
G +L+ L+ ++L++NNI ++ F + + L NN + Y + F
Sbjct: 259 G-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317
Query: 307 PMLHLKKLQLDSNK 320
+ +Q + K
Sbjct: 318 CVTDRLAIQFGNYK 331
Score = 195 bits (497), Expect = 2e-59
Identities = 61/253 (24%), Positives = 105/253 (41%), Gaps = 13/253 (5%)
Query: 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL 153
+L + S +K +P L L N I L + F L L L L N +
Sbjct: 34 HLRVVQCSDLGLKAVPKEISPDTTLL---DLQNNDISELRKDDFKGLQHLYALVLVNNKI 90
Query: 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK 213
+ I FS + L++L + N + ++PP + L L + +NR+ + G+F+ +
Sbjct: 91 SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR---IHDNRIRKVPKGVFSGLR 147
Query: 214 HLTFLELSENWI--SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
++ +E+ N + S F L L L + + + IP L +L L N
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLN---ELHLDHN 203
Query: 272 NIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSL 331
IQ + + L L L +N +R ++ + + L++L LD+NKL + L
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPD 262
Query: 332 LPNLITLKLAKNP 344
L L + L N
Sbjct: 263 LKLLQVVYLHTNN 275
Score = 113 bits (284), Expect = 2e-28
Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 14/187 (7%)
Query: 159 GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFL 218
T SG+ L L + P G L+ + + L + + T L
Sbjct: 8 ETTSGIPDLDSLPPTYS--AMCPFGCHCHLRVVQ---CSDLGLKAVPKEIS---PDTTLL 59
Query: 219 ELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHA 278
+L N IS L D+F L L L L N I I +F+ L+ L+KL++ N++ E+
Sbjct: 60 DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP 119
Query: 279 GTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQ--YLATDSLSLLPNLI 336
++L L +++N +R + F + ++ +++ N L+ + L L
Sbjct: 120 NLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175
Query: 337 TLKLAKN 343
L++++
Sbjct: 176 YLRISEA 182
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 230 bits (589), Expect = 7e-73
Identities = 77/310 (24%), Positives = 122/310 (39%), Gaps = 16/310 (5%)
Query: 79 NHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFH 138
L+ +P L + +L DLS N I + ++ + + L + L+ N I ++ + F
Sbjct: 41 GSLNSIPSGLTEAVKSL---DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97
Query: 139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPP-GIFDDLKYLDFLSLR 197
L SLE LDLS N L+++ F + SL L L N L +F L L L +
Sbjct: 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 157
Query: 198 NN-RLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS 256
N + I+ F L LE+ + + S + ++ L L +
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF 217
Query: 257 FANLQSLEKLFLYSN-----NIQELHAGTFAGLTNLTAL---FLNNNLLRYLDTKAFEPM 308
S+E L L + EL G L + + L + K +
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQI 276
Query: 309 LHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDC-AILYMARWLRANRRKVWD 367
L +L+ N+L+ + L +L + L NPW C C I Y++RWL N +K
Sbjct: 277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 336
Query: 368 SKPTCRGPGN 377
S C G G
Sbjct: 337 S-AKCSGSGK 345
Score = 118 bits (297), Expect = 4e-30
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 29/178 (16%)
Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
+ L+ I GL + + L+LS N I+ ++ + + +L+ L L N I TI
Sbjct: 35 ICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91
Query: 253 PAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNN----------------- 295
SF++L SLE L L N + L + F L++LT L L N
Sbjct: 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151
Query: 296 ---------LLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
+ K F + L++L++D++ LQ SL + N+ L L
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 221 bits (565), Expect = 4e-70
Identities = 78/263 (29%), Positives = 118/263 (44%), Gaps = 11/263 (4%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
Q +P N+ S + LDLS N L + +F L+ L L I
Sbjct: 10 ITYQCMELNFYKIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSL 239
+ G + L +L L L N + + G F+ L L E ++SL L +L
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 240 KELHLGQNYIETIP-AGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTA----LFLNN 294
KEL++ N I++ F+NL +LE L L SN IQ ++ L + L L+
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 295 NLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILY 353
N + ++ AF+ + LK+L LD+N+L+ + L +L + L NPW C C I Y
Sbjct: 187 NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 245
Query: 354 MARWLRANRRKVWDSKPTCRGPG 376
++RWL N +K S C G G
Sbjct: 246 LSRWLNKNSQKEQGS-AKCSGSG 267
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 230 bits (588), Expect = 6e-70
Identities = 77/351 (21%), Positives = 130/351 (37%), Gaps = 34/351 (9%)
Query: 46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
++ +DL LS L GL L +L L N L + +L+ + + N
Sbjct: 279 GLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337
Query: 106 KT-LPSTFFKGAIRLTVVQLSYNAIESLPAN--VFHDLISLEELDLSQNVLTSIQYGTFS 162
+ L + + L + LS++ IE+ +L L+ L+LS N S++ F
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397
Query: 163 GMYSLKRLKLQSNRINQL-PPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELS 221
L+ L L R+ F +L L L+L ++ L LF+ L L L
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457
Query: 222 ENWISSLNGDE---FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHA 278
N N + L L+ L L + +I +F +L+ + + L N +
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517
Query: 279 GTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITL 338
+ L + L L SN + + L +L T+
Sbjct: 518 EALSHLKGIY-------------------------LNLASNHISIILPSLLPILSQQRTI 552
Query: 339 KLAKNPWHCDCAILYMARWLRANRRKVWD-SKPTCRGPGNLGGKSVEDMSF 388
L +NP C C+ +Y W + N +K+ D C P L G + D++
Sbjct: 553 NLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603
Score = 224 bits (572), Expect = 1e-67
Identities = 83/336 (24%), Positives = 126/336 (37%), Gaps = 10/336 (2%)
Query: 14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTE 73
+ C + T +C + E+P +P ++ N L T+ F+ L LT
Sbjct: 4 SDQKCIEKEVNKTYNCENLGLNEIPGT--LPNSTECLEFSFNVLPTIQNTTFSRLINLTF 61
Query: 74 LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP 133
L L + + + F S L T+ L+ N + + T G L + I S+
Sbjct: 62 LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121
Query: 134 ANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF 193
H+ +LE L L N ++SI+ LK L Q+N I+ L L+
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181
Query: 194 LSLR--NNRLSFIRPGLFNYFKHLTFLELSENWIS--SLNGDEFSQLTSLKELHLGQNYI 249
LSL N ++ I PG F+ L G + S + SL
Sbjct: 182 LSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240
Query: 250 ETIPAGSFANLQ--SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEP 307
E I F L S+E + L + + + TF + L L L L L
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SGLVG 299
Query: 308 MLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
+ LKKL L +NK + L S S P+L L + N
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335
Score = 48.1 bits (115), Expect = 4e-06
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 261 QSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNK 320
+ + + + E+ + L + N+L + F +++L L L +
Sbjct: 12 EVNKTYNCENLGLNEIPGTLP---NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ 68
Query: 321 LQYLATDSLSLLPNLITLKLAKNP 344
+ ++ D+ L TL L NP
Sbjct: 69 IYWIHEDTFQSQHRLDTLVLTANP 92
Score = 31.1 bits (71), Expect = 0.65
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 37 LPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS 82
+ + + ++L N +S + L + + LR+N L
Sbjct: 515 SSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 227 bits (581), Expect = 6e-69
Identities = 74/360 (20%), Positives = 135/360 (37%), Gaps = 14/360 (3%)
Query: 39 FDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTM 98
+ + V I L + F L ++ + L + L ++
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK--HFKWQSL 312
Query: 99 DLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQY 158
+ + +K P+ L + L+ N L SL LDLS+N L+
Sbjct: 313 SIIRCQLKQFPTLDLP---FLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGC 367
Query: 159 GTFS--GMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRP-GLFNYFKHL 215
++S G SL+ L L N + F L+ L L +++ L + F + L
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426
Query: 216 TFLELSENWISSLNGDEFSQLTSLKELHLGQN-YIETIPAGSFANLQSLEKLFLYSNNIQ 274
+L++S F LTSL L + N + + + FAN +L L L ++
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486
Query: 275 ELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPN 334
++ G F L L L +++N L +LD+ + + L L N+++ +
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546
Query: 335 LITLKLAKNPWHCDCAILYMARWLRANRRKVWD-SKPTCRGPGNLGGKSVEDMSFDDLCE 393
L L N C C +W++ ++ + + + TC P + V D + + C
Sbjct: 547 LAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFN-NSTCY 605
Score = 197 bits (503), Expect = 1e-57
Identities = 76/341 (22%), Positives = 127/341 (37%), Gaps = 22/341 (6%)
Query: 17 PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKL 76
PC T C Q + ++P D IP + IDL N L L +F+ +L L L
Sbjct: 6 PCIEVVPNITYQCMDQKLSKVPDD--IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDL 63
Query: 77 RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
+ + + K + +LS + L+ N I++ F G L + + SL +
Sbjct: 64 SRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP 123
Query: 137 FHDLISLEELDLSQNVLTSIQY-GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF-- 193
LI+L++L+++ N + S + FS + +L + L N I + L+
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183
Query: 194 --LSLRNNRLSFIRPGLFNYFKHLTFLELSEN-WISSLNGDEFSQLTSLKELHL------ 244
L + N + FI+ F K L L L N S++ L L L
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242
Query: 245 GQNYIETIPAGSFANLQSLEKLFLY--SNNIQELHAGTFAGLTNLTALFLNNNLLRYLDT 302
+ +E L + N F L N++A+ L ++YL+
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED 302
Query: 303 KAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
+ L + +L+ T LP L +L L N
Sbjct: 303 VPK--HFKWQSLSIIRCQLKQFPTLD---LPFLKSLTLTMN 338
Score = 163 bits (415), Expect = 3e-45
Identities = 60/332 (18%), Positives = 104/332 (31%), Gaps = 40/332 (12%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP-GKLFISTINLSTMDLSQNLIK 106
+ +L++L L L +L + N + F + NL +DLS N I+
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166
Query: 107 TLPSTFFKGAIRLTVVQ----LSYNAIESLPANVFHDLISLEELDLSQNVL-TSIQYGTF 161
T+ + V +S N I+ + F + L EL L N ++I
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCL 225
Query: 162 SGMYSLKRLKLQSNRINQ------LPPGIFDDLKYLDF--LSLRNNRLSFIRPGLFNYFK 213
+ L +L P I + L + L F+
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285
Query: 214 HLTFLELSENWIS-------------------SLNGDEFSQLTSLKELHLGQNYIETIPA 254
+++ + L+ I L L LK L L N
Sbjct: 286 NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF- 344
Query: 255 GSFANLQSLEKLFLYSNNIQELHAGTFA--GLTNLTALFLNNNLLRYLDTKAFEPMLHLK 312
L SL L L N + +++ G +L L L+ N + F + L+
Sbjct: 345 -KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQ 402
Query: 313 KLQLDSNKLQYL-ATDSLSLLPNLITLKLAKN 343
L + L+ + + L L+ L ++
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434
Score = 140 bits (356), Expect = 5e-37
Identities = 45/205 (21%), Positives = 80/205 (39%), Gaps = 9/205 (4%)
Query: 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR 205
L+ + S S K + L N + L F + L +L L + I
Sbjct: 16 YQCMDQKLSKVPDDIPS---STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72
Query: 206 PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEK 265
++ HL+ L L+ N I S + FS LTSL+ L + + ++ + L +L+K
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132
Query: 266 LFLYSNNIQELH-AGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLK----KLQLDSNK 320
L + N I F+ LTNL + L+ N ++ + + + L + N
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192
Query: 321 LQYLATDSLSLLPNLITLKLAKNPW 345
+ ++ + + L L L N
Sbjct: 193 IDFIQDQAFQGI-KLHELTLRGNFN 216
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 219 bits (561), Expect = 2e-65
Identities = 88/341 (25%), Positives = 146/341 (42%), Gaps = 18/341 (5%)
Query: 19 RCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRK 78
+C C + ++P D +P +I V++L NQL L FT +LT L +
Sbjct: 1 KCTVSHEVADCSHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58
Query: 79 NHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFH 138
N +S+L +L L ++L N + L F LT + L N+I+ + N F
Sbjct: 59 NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118
Query: 139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLK--YLDFLSL 196
+L LDLS N L+S + GT + +L+ L L +N+I L D L L L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178
Query: 197 RNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFS---QLTSLKELHLGQNYIETIP 253
+N++ PG F+ L L L+ + ++ TS++ L L + + T
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238
Query: 254 AGSFANLQ--SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHL 311
+F L+ +L L L NN+ + +FA L L FL N +++L + + + ++
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298
Query: 312 KKLQLDSN---------KLQYLATDSLSLLPNLITLKLAKN 343
+ L L + L + S L L L + N
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339
Score = 214 bits (546), Expect = 3e-63
Identities = 87/359 (24%), Positives = 143/359 (39%), Gaps = 41/359 (11%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS--ELPGKLFISTIN--LSTMDLSQ 102
+ +++ N + + + FTGL L L L + S L + F+S + L ++L++
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390
Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIE-SLPANVFHDLISLEELDLSQNVLTSIQYGTF 161
N I + S F L V+ L N I L + L ++ E+ LS N + +F
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450
Query: 162 SGMYSLKRLKLQSNRINQLP--PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLE 219
+ + SL+RL L+ + + P F L+ L L L NN ++ I + + L L+
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 510
Query: 220 LSENWISSLNGD--------EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
L N ++ L L+ L L+L N + IP F +L L+ + L N
Sbjct: 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570
Query: 272 NIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSL 331
N+ L A F +L +L L NL+ ++ K F P
Sbjct: 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP-----------------------A 607
Query: 332 LPNLITLKLAKNPWHCDC-AILYMARWLRANRRKV--WDSKPTCRGPGNLGGKSVEDMS 387
NL L + NP+ C C +I + W+ + S C P + G V
Sbjct: 608 FRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFD 666
Score = 199 bits (508), Expect = 8e-58
Identities = 81/318 (25%), Positives = 129/318 (40%), Gaps = 20/318 (6%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
+ + L N + + + F L L L N LS + NL + LS N I+
Sbjct: 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158
Query: 107 TLPSTFFK--GAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI---QYGTF 161
L S L ++LS N I+ FH + L L L+ L +
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218
Query: 162 SGMYSLKRLKLQSNRINQLPPGIFDDLKY--LDFLSLRNNRLSFIRPGLFNYFKHLTFLE 219
S++ L L +++++ F LK+ L L L N L+ + F + L +
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278
Query: 220 LSENWISSLNGDEFSQLTSLKELHLGQNY---------IETIPAGSFANLQSLEKLFLYS 270
L N I L L +++ L+L +++ + I SF L+ LE L +
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338
Query: 271 NNIQELHAGTFAGLTNLTALFLNNNLL--RYLDTKAFEPMLH--LKKLQLDSNKLQYLAT 326
N+I + + F GL NL L L+N+ R L + F + H L L L NK+ + +
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398
Query: 327 DSLSLLPNLITLKLAKNP 344
D+ S L +L L L N
Sbjct: 399 DAFSWLGHLEVLDLGLNE 416
Score = 51.2 bits (123), Expect = 4e-07
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 262 SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKL 321
S E + ++ TN+T L L +N LR L F L L + N +
Sbjct: 5 SHEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 322 QYLATDSLSLLPNLITLKLAKNP 344
L + LP L L L N
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNE 84
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 218 bits (558), Expect = 5e-64
Identities = 97/386 (25%), Positives = 164/386 (42%), Gaps = 26/386 (6%)
Query: 22 PEIHTLSCWKQDMEELP---FDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRK 78
I ++++ F + +R +DL + +L+ F L L L L
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299
Query: 79 NHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFH 138
N ++++ + F NL ++LS NL+ L S+ F G ++ + L N I + F
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359
Query: 139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRN 198
L L+ LDL N LT+I + S+ + L N++ LP + + L
Sbjct: 360 FLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSE 410
Query: 199 NRLSFIRPGLF-NYFKHLTFLELSENWISSLNGDE-FSQLTSLKELHLGQNYIE-----T 251
NRL + F HL L L++N SS +GD+ S+ SL++L LG+N ++
Sbjct: 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470
Query: 252 IPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHL 311
+ F L L+ L+L N + L G F+ LT L L LN+N L L +L
Sbjct: 471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NL 528
Query: 312 KKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKV--WDSK 369
+ L + N+L + + +L L + N + C+C + WL + +
Sbjct: 529 EILDISRNQLLAP---NPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPAD 585
Query: 370 PTCRGPGNLGGKSVEDMSFDDLCEGQ 395
C P + G S+ +S + E +
Sbjct: 586 IYCVYPDSFSGVSLFSLSTEGCDEEE 611
Score = 194 bits (495), Expect = 3e-55
Identities = 80/324 (24%), Positives = 134/324 (41%), Gaps = 26/324 (8%)
Query: 46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFISTINLSTMDLSQNL 104
+ L N + T++ +F L +L L+L + + + F + NL +DL +
Sbjct: 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84
Query: 105 IKTLPSTFFKGAIRLTVVQLSYNAIES--LPANVFHDLISLEELDLSQNVLTSIQ-YGTF 161
I L F+G L ++L + + L F +L +L LDLS+N + S+ + +F
Sbjct: 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144
Query: 162 SGMYSLKRLKLQSNRINQLPPGIFDDL--KYLDFLSLRNNRLSFIRPGLF----NYFK-- 213
+ SLK + SN+I + + L K L F SL N L + N F+
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204
Query: 214 HLTFLELSENWISSLNGDEFSQ------------LTSLKELHLGQNYIETIPAGSFANLQ 261
L L++S N + FS + G + I+ +FA L
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264
Query: 262 --SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSN 319
S+ L L + L++ F L +L L L N + + +AF + +L+ L L N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Query: 320 KLQYLATDSLSLLPNLITLKLAKN 343
L L + + LP + + L KN
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKN 348
Score = 173 bits (441), Expect = 6e-48
Identities = 75/345 (21%), Positives = 124/345 (35%), Gaps = 51/345 (14%)
Query: 48 RVIDLGINQLS--TLSKDAFTGLYKLTELKLRKNHLSELP-GKLFISTINLSTMDLSQNL 104
+ L LS L F L LT L L KN + L F +L ++D S N
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159
Query: 105 IKTLPSTFFKG--AIRLTVVQLSYNAIESLPANVFHDL------ISLEELDLSQNVLTSI 156
I + + L+ L+ N++ S + + + LE LD+S N T
Sbjct: 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219
Query: 157 QYGTFS------------GMYSLKRLKLQSNRINQLPPGIFDDLK--YLDFLSLRNNRLS 202
G FS + + + I F L + L L + +
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279
Query: 203 FIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQS 262
+ +F K L L L+ N I+ + + F L +L+ L+L N + + + +F L
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339
Query: 263 LEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQ 322
+ + L N+I + TF L L L L +N L + + + + L NKL
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLV 394
Query: 323 YLATDSLSL---------------------LPNLITLKLAKNPWH 346
L +L+ +P+L L L +N +
Sbjct: 395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439
Score = 155 bits (394), Expect = 1e-41
Identities = 58/291 (19%), Positives = 108/291 (37%), Gaps = 30/291 (10%)
Query: 79 NHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE-SLPANVF 137
+L+++P L + LS N I+T+ ++ F +L +++L ++ F
Sbjct: 14 CNLTQVPQVLN----TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69
Query: 138 HDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ--LPPGIFDDLKYLDFLS 195
+L +L LDL + + + F G++ L L+L ++ L G F +LK L L
Sbjct: 70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129
Query: 196 LRNNRLSFIRP-GLFNYFKHLTFLELSENWISSLNGDEFSQLT--SLKELHLGQNYIETI 252
L N++ + F L ++ S N I + E L +L L N + +
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189
Query: 253 PAGSFANLQ------SLEKLFLYSNNIQELHAGTFA------------GLTNLTALFLNN 294
+ + LE L + N G F+ ++
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249
Query: 295 NLLRYLDTKAFEPM--LHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
+ ++ D F + ++ L L + L + L +L L LA N
Sbjct: 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300
Score = 106 bits (265), Expect = 8e-25
Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 8/152 (5%)
Query: 196 LRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE-TIPA 254
R L+ + L LS N+I ++ F L L+ L LG Y TI
Sbjct: 11 YRFCNLTQV----PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK 66
Query: 255 GSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLR--YLDTKAFEPMLHLK 312
+F NL +L L L S+ I LH F GL +L L L L L F + L
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126
Query: 313 KLQLDSNKLQYL-ATDSLSLLPNLITLKLAKN 343
+L L N+++ L S L +L ++ + N
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 211 bits (540), Expect = 3e-63
Identities = 83/333 (24%), Positives = 125/333 (37%), Gaps = 17/333 (5%)
Query: 52 LGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGK---LFISTINLSTMDLSQNLIKTL 108
L K A GL LT + R +L LF N+S+ L I+ +
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297
Query: 109 PSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK 168
+ ++L P L SL+ L + N + + + SL+
Sbjct: 298 KDFSYNF--GWQHLELVNCKFGQFP---TLKLKSLKRLTFTSNKGGNA--FSEVDLPSLE 350
Query: 169 RLKLQSNRINQ--LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
L L N ++ L +L L N + + F + L L+ + +
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLK 409
Query: 227 SL-NGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE-LHAGTFAGL 284
+ F L +L L + + G F L SLE L + N+ QE F L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 285 TNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
NLT L L+ L L AF + L+ L + SN+L+ + L +L + L NP
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529
Query: 345 WHCDCA-ILYMARWLRANRRKVWDSKPTCRGPG 376
W C C I Y++RWL N +K S C G G
Sbjct: 530 WDCSCPRIDYLSRWLNKNSQKEQGS-AKCSGSG 561
Score = 184 bits (470), Expect = 3e-53
Identities = 74/334 (22%), Positives = 133/334 (39%), Gaps = 20/334 (5%)
Query: 17 PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKL 76
PC T C + + ++P + +P + +DL N L L +F +L L L
Sbjct: 2 PCVEVVPNITYQCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59
Query: 77 RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
+ + + + S +LST+ L+ N I++L F G L + + SL
Sbjct: 60 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119
Query: 137 FHDLISLEELDLSQNVLTSIQYG-TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF-- 193
L +L+EL+++ N++ S + FS + +L+ L L SN+I + L +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 194 --LSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS-SLNGDEFSQLTSLKELHL------ 244
L L N ++FI+PG F + L L L N+ S ++ L L+ L
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238
Query: 245 GQNYIETIPAGSFANLQSLEKLFLYSNNIQELH---AGTFAGLTNLTALFLNNNLLRYLD 301
+ +E + L +L + F LTN+++ L + + +
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298
Query: 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
++ + L+L + K T L L L
Sbjct: 299 DFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRL 330
Score = 168 bits (428), Expect = 3e-47
Identities = 72/276 (26%), Positives = 111/276 (40%), Gaps = 16/276 (5%)
Query: 76 LRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPAN 135
+ + ++P L ST NL DLS N ++ L S F L V+ LS I+++
Sbjct: 14 CMELNFYKIPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 136 VFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLS 195
+ L L L L+ N + S+ G FSG+ SL++L + L LK L L+
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130
Query: 196 LRNNRLSFIRPG-LFNYFKHLTFLELSENWISSLNGDEFSQLTSLK----ELHLGQNYIE 250
+ +N + + F+ +L L+LS N I S+ + L + L L N +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 251 TIPAGSFANLQSLEKLFLYSNNIQ-ELHAGTFAGLTNLTAL------FLNNNLLRYLDTK 303
I G+F + L KL L +N + GL L F N L D
Sbjct: 191 FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249
Query: 304 AFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLK 339
A E + +L + L Y D + L L +
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285
Score = 162 bits (413), Expect = 5e-45
Identities = 60/263 (22%), Positives = 96/263 (36%), Gaps = 16/263 (6%)
Query: 97 TMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI 156
T + +P + LS+N + L + F L+ LDLS+ + +I
Sbjct: 11 TYQCMELNFYKIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67
Query: 157 QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLT 216
+ G + + L L L N I L G F L L L L+ + + K L
Sbjct: 68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127
Query: 217 FLELSENWISSLN-GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLE----KLFLYSN 271
L ++ N I S + FS LT+L+ L L N I++I L + L L N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187
Query: 272 NIQELHAGTFAGLTNLTALFLNNNLLRY-LDTKAFEPMLHLKKLQL------DSNKLQYL 324
+ + G F + L L L NN + + + L+ +L + L+
Sbjct: 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246
Query: 325 ATDSLSLLPNLITLKLAKNPWHC 347
+L L NL +
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDY 269
Score = 123 bits (310), Expect = 7e-31
Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 3/158 (1%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP-GKLFISTINLSTMDLSQNLI 105
++ +DL N + T+S + F GL +L L + ++L ++ +F+S NL +D+S
Sbjct: 375 LKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 106 KTLPSTFFKGAIRLTVVQLSYNAI-ESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM 164
+ + F G L V++++ N+ E+ ++F +L +L LDLSQ L + F+ +
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 165 YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202
SL+ L + SN++ +P GIFD L L + L N
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 202 bits (517), Expect = 5e-63
Identities = 85/266 (31%), Positives = 133/266 (50%), Gaps = 6/266 (2%)
Query: 127 NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFD 186
A+ V + +D S LT+I + K+L LQSN+++ LP F
Sbjct: 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPA---DTKKLDLQSNKLSSLPSKAFH 58
Query: 187 DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQ 246
L L L L +N+L + G+F K+L L +++N + +L F QL +L EL L +
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118
Query: 247 NYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFE 306
N ++++P F +L L L L N +Q L G F LT+L L L NN L+ + AF+
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178
Query: 307 PMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDC-AILYMARWLRANRRKV 365
+ LK L+LD+N+L+ + + L L L+L +NPW C C I+YMA+WL+ +
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEG 238
Query: 366 WDSKPTCRGPGNLGGKSVEDMSFDDL 391
GGK+V +++ D
Sbjct: 239 LG--GVDTAGCEKGGKAVLEITEKDA 262
Score = 175 bits (445), Expect = 2e-52
Identities = 74/211 (35%), Positives = 109/211 (51%), Gaps = 2/211 (0%)
Query: 13 CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLT 72
G C C +++ C + + +P + IP D + +DL N+LS+L AF L KL
Sbjct: 7 KDGGVCSCNNNKNSVDCSSKKLTAIPSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLR 64
Query: 73 ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL 132
L L N L LP +F NL T+ ++ N ++ LP F + L ++L N ++SL
Sbjct: 65 LLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL 124
Query: 133 PANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLD 192
P VF L L L L N L S+ G F + SLK L+L +N++ ++P G FD L L
Sbjct: 125 PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184
Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
L L NN+L + G F+ + L L+L EN
Sbjct: 185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 202 bits (515), Expect = 7e-60
Identities = 71/371 (19%), Positives = 135/371 (36%), Gaps = 45/371 (12%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
I + L +++ + L + L + L+LR +L+ S M
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233
Query: 107 TLPSTFFKGAIRLT------------------VVQLSYNAIESLPANVFHDLISLEELDL 148
L F ++L + + + + + + +++ L +
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293
Query: 149 SQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGL 208
Q L +S + +KR+ ++++++ +P LK L+FL L N +
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353
Query: 209 FNYFKHLTFLE---LSENWISSL--NGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSL 263
L+ LS+N + S+ G+ L +L L + +N +P + +
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKM 412
Query: 264 EKLFLYSNNIQELHAGTF-----------------AGLTNLTALFLNNNLLRYLDTKAFE 306
L L S I+ + L L L+++ N L+ L +
Sbjct: 413 RFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLF 472
Query: 307 PMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDC-AILYMARWLRANRRKV 365
P L +++ N+L+ + L +L + L NPW C C I Y++RWL N +K
Sbjct: 473 P--VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE 530
Query: 366 WDSKPTCRGPG 376
S C G G
Sbjct: 531 QGS-AKCSGSG 540
Score = 197 bits (503), Expect = 5e-58
Identities = 52/342 (15%), Positives = 125/342 (36%), Gaps = 22/342 (6%)
Query: 22 PEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHL 81
+ +P + ++ +DL N+++ + L L L+ + +
Sbjct: 5 DASGVCDGRSRSFTSIPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62
Query: 82 SELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPAN-VFHDL 140
+ + G F S +L +DLS N + +L S++F L + L N ++L +F +L
Sbjct: 63 NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122
Query: 141 ISLEELDLS-QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
+L+ L + + I+ F+G+ SL L++++ + ++ + L+L +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182
Query: 200 RLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFAN 259
+F+ + + +LEL + ++ + + SF
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242
Query: 260 LQSLEKL------------------FLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLD 301
L L + + + + L + L Y
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302
Query: 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
+ + + +K++ ++++K+ + L +L L L++N
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344
Score = 180 bits (459), Expect = 1e-51
Identities = 57/321 (17%), Positives = 119/321 (37%), Gaps = 25/321 (7%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP-GKLFISTINLSTMDLS-QNLI 105
+DL N LS+LS F L L L L N L LF + NL T+ +
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136
Query: 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMY 165
+ F G L +++ ++ + + + + L L + + +
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196
Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYF----------KHL 215
S++ L+L+ + + + + R S + FN +
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256
Query: 216 TFLELSENWISSLNGDEFS--------QLTSLKELHLGQNYIETIPAGSFANLQSLEKLF 267
F + + N + N E + +++ LH+ Q Y+ + ++ L+ ++++
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316
Query: 268 LYSNNIQELHAGTFAGLTNLTALFLNNNLLRYL---DTKAFEPMLHLKKLQLDSNKLQYL 324
+ ++ + + L +L L L+ NL+ ++ L+ L L N L+ +
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376
Query: 325 ATDSLSL--LPNLITLKLAKN 343
L L NL +L +++N
Sbjct: 377 QKTGEILLTLKNLTSLDISRN 397
Score = 161 bits (409), Expect = 1e-44
Identities = 50/252 (19%), Positives = 95/252 (37%), Gaps = 5/252 (1%)
Query: 99 DLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQY 158
D ++PS + + LS+N I + +L+ L L + + +I+
Sbjct: 11 DGRSRSFTSIPSGLTA---AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67
Query: 159 GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL-SFIRPGLFNYFKHLTF 217
F + SL+ L L N ++ L F L L +L+L N + LF +L
Sbjct: 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127
Query: 218 LELS-ENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
L + S + +F+ LTSL EL + + + S +++ + L L+ + L
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187
Query: 277 HAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLI 336
L+++ L L + L ++ + + L +S + L L+
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247
Query: 337 TLKLAKNPWHCD 348
L + D
Sbjct: 248 RYILELSEVEFD 259
Score = 158 bits (402), Expect = 1e-43
Identities = 53/235 (22%), Positives = 95/235 (40%), Gaps = 15/235 (6%)
Query: 45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL 104
V IR + + L ++ L K+ + + + + +P +L +DLS+NL
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345
Query: 105 IKTLP---STFFKGAIRLTVVQLSYNAIESLP--ANVFHDLISLEELDLSQNVLTSIQYG 159
+ S L + LS N + S+ + L +L LD+S+N +
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS 405
Query: 160 TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLE 219
++ L L S I + I L+ LD + NN L L L L
Sbjct: 406 -CQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLD---VSNNNLDSFSLFLPR----LQELY 457
Query: 220 LSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQ 274
+S N + +L L + + +N ++++P G F L SL+K++L++N
Sbjct: 458 ISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
Score = 70.9 bits (174), Expect = 2e-13
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 34 MEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTI 93
+P P +R ++L + + L L + N+L L
Sbjct: 399 FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ---TLEVLDVSNNNLDSFSLFLP---- 451
Query: 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN 151
L + +S+N +KTLP L V+++S N ++S+P +F L SL+++ L N
Sbjct: 452 RLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 195 bits (498), Expect = 3e-59
Identities = 60/289 (20%), Positives = 113/289 (39%), Gaps = 17/289 (5%)
Query: 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN-V 152
+ ++ + +PS + AI L + + + F LE++++SQN V
Sbjct: 10 SNRVFLCQESKVTEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66
Query: 153 LTSIQYGTFSGMYSLKRLKLQ-SNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNY 211
L I+ FS + L ++++ +N + + P F +L L +L + N + + +
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126
Query: 212 FKHLTFLELSENW-ISSLNGDEFSQLTS-LKELHLGQNYIETIPAGSFANLQSLEKLFLY 269
L++ +N I ++ + F L+ L L +N I+ I +F Q E
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186
Query: 270 SNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSL 329
+NN++EL F G + L ++ + L + E + L+ + K +L
Sbjct: 187 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK----KLPTL 242
Query: 330 SLLPNLITLKLAKNPWHCDCAILYMARWLRANRR-KVWDSKPTCRGPGN 377
L L+ L P HC A W R +K R +
Sbjct: 243 EKLVALMEASLT-YPSHCCA----FANWRRQISELHPICNKSILRQEVD 286
Score = 67.2 bits (164), Expect = 2e-12
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Query: 44 PVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN 103
+ ++ L N + + AF G N+L ELP +F +D+S+
Sbjct: 153 SFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212
Query: 104 LIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN 151
I +LPS + +L S ++ LP L++L E L+
Sbjct: 213 RIHSLPSYGLENLKKLRA--RSTYNLKKLPT--LEKLVALMEASLTYP 256
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 193 bits (492), Expect = 4e-59
Identities = 59/233 (25%), Positives = 88/233 (37%), Gaps = 7/233 (3%)
Query: 133 PANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLD 192
P + S E++ + LT++ L L N + L
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLT 58
Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
L+L L+ ++ L L+LS N + SL L +L L + N + ++
Sbjct: 59 QLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSL 115
Query: 253 PAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLK 312
P G+ L L++L+L N ++ L G L L L NN L L + +L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 313 KLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKV 365
L L N L + L L NPW C+C ILY RWL+ N V
Sbjct: 176 TLLLQENSLYTIPKGFFGSH-LLPFAFLHGNPWLCNCEILYFRRWLQDNAENV 227
Score = 165 bits (419), Expect = 2e-48
Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 6/208 (2%)
Query: 16 GPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELK 75
++C K+++ LP D +P D ++ L N L T S +LT+L
Sbjct: 4 CEVSKVASHLEVNCDKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 76 LRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPAN 135
L + L++L + + L T+DLS N +++LP + LTV+ +S+N + SLP
Sbjct: 62 LDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLG 118
Query: 136 VFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLS 195
L L+EL L N L ++ G + L++L L +N + +LP G+ + L+ LD L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 196 LRNNRLSFIRPGLFNYFKHLTFLELSEN 223
L+ N L I G F L F L N
Sbjct: 179 LQENSLYTIPKGFFG-SHLLPFAFLHGN 205
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 188 bits (479), Expect = 6e-57
Identities = 58/299 (19%), Positives = 111/299 (37%), Gaps = 39/299 (13%)
Query: 62 KDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTV 121
+ + K+ + L + L S N+ +DLS N + + + +L +
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
+ LS N + L +L LDL+ N + + G S++ L +N I+++
Sbjct: 63 LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISRVS 115
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN-GDEFSQLTSLK 240
K + L NN+++ +R + +L+L N I ++N + + +L+
Sbjct: 116 CSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172
Query: 241 ELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYL 300
L+L N+I + L+ L L SN + + F +T + L NN L +
Sbjct: 173 HLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI 229
Query: 301 DTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLR 359
+ +L NL L N +HC + ++ R
Sbjct: 230 E-------------------------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263
Score = 179 bits (456), Expect = 2e-53
Identities = 50/295 (16%), Positives = 98/295 (33%), Gaps = 24/295 (8%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
++ + + L + + EL L N LS++ L ++LS N++
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ L + L+ N ++ L S+E L + N ++ +
Sbjct: 72 ETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQ---G 121
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI-RPGLFNYFKHLTFLELSENWI 225
K + L +N+I L + +L L+ N + + L L L L N+I
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181
Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLT 285
+ G LK L L N + + F + + + L +N + +
Sbjct: 182 YDVKGQVV--FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK-ALRFSQ 237
Query: 286 NLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKL 340
NL L N L+ + ++Q +A ++ L +
Sbjct: 238 NLEHFDLRGNGFHCGT---------LRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283
Score = 103 bits (260), Expect = 3e-25
Identities = 39/224 (17%), Positives = 71/224 (31%), Gaps = 33/224 (14%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
+ N +S +S G + L N ++ L + +DL N I T
Sbjct: 102 ETLHAANNNISRVSCSRGQGK---KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Query: 108 LP-STFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ + + L + L YN I + V L+ LDLS N L + F
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAG 215
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
+ + L++N++ + + L+ LR N F + K+ +++ +
Sbjct: 216 VTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVK 273
Query: 227 SLNGDE------------------------FSQLTSLKELHLGQ 246
L G +L +L H
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 194 bits (494), Expect = 3e-56
Identities = 70/353 (19%), Positives = 132/353 (37%), Gaps = 38/353 (10%)
Query: 46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
++ L + + F+ + L+L + P S L + N
Sbjct: 283 NVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL---TFTSNKG 337
Query: 106 KTLPSTFFKGAIRLTVVQLSYNAI--ESLPANVFHDLISLEELDLSQNVLTSIQYGTFSG 163
S L + LS N + + + SL+ LDLS N + ++ F G
Sbjct: 338 GNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG 394
Query: 164 MYSLKRLKLQSNRINQL-PPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSE 222
+ L+ L Q + + Q+ +F L+ L +L + + G+FN L L+++
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 223 N-WISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTF 281
N + + D F++L +L L L Q +E + +F +L SL+ L + NN L +
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514
Query: 282 AGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLA 341
L +L L + N + + + +L L L
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQH-----------------------FPSSLAFLNLT 551
Query: 342 KNPWHCDCAILYMARWLRANRRKVWD-SKPTCRGPGNLGGKSVEDMSFDDLCE 393
+N + C C +W++ R+ + + + C P + G V +S + C+
Sbjct: 552 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPV--LSLNITCQ 602
Score = 171 bits (436), Expect = 4e-48
Identities = 74/342 (21%), Positives = 133/342 (38%), Gaps = 20/342 (5%)
Query: 17 PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKL 76
PC T C + + ++P + +P + +DL N L L +F +L L L
Sbjct: 2 PCVEVVPNITYQCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59
Query: 77 RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
+ + + + S +LST+ L+ N I++L F G L + + SL
Sbjct: 60 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119
Query: 137 FHDLISLEELDLSQNVLTSIQYG-TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF-- 193
L +L+EL+++ N++ S + FS + +L+ L L SN+I + L +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 194 --LSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS-SLNGDEFSQLTSLKELHL------ 244
L L N ++FI+PG F + L L L N+ S ++ L L+ L
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238
Query: 245 GQNYIETIPAGSFANLQSLEKLFLYSNNIQELH---AGTFAGLTNLTALFLNNNLLRYLD 301
+ +E + L +L + F LTN+++ L + + +
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298
Query: 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
++ + L+L + K T L L L
Sbjct: 299 DFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338
Score = 41.9 bits (99), Expect = 3e-04
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 285 TNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
+ L L+ N LR+L + +F L+ L L ++Q + + L +L TL L NP
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 188 bits (480), Expect = 4e-53
Identities = 63/333 (18%), Positives = 118/333 (35%), Gaps = 29/333 (8%)
Query: 47 IRVIDLGINQLSTL-SKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
I++ +G N L + + + KL L N + L F + + L+ + L N I
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQI 607
Query: 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANV-FHDLISLEELDLSQNVLTSIQYGTFSGM 164
+ +P F ++ + S+N ++ +P + + +D S N + S M
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667
Query: 165 -----YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI-------RPGLFNYF 212
+ + L N I + P +F + + L NN ++ I + G +
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727
Query: 213 KHLTFLELSENWISSL-NGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKL----- 266
LT ++L N ++SL + + L L + + N + P N L+
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQ 786
Query: 267 -FLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLA 325
N I +L L + +N +R +D K L L + N +
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP---QLYILDIADNPNISID 843
Query: 326 TDSL--SLLPNLITLKLAKNPWHCDCAILYMAR 356
S+ + + L K C L + R
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQDIRGCDALGIER 876
Score = 174 bits (442), Expect = 4e-48
Identities = 56/327 (17%), Positives = 115/327 (35%), Gaps = 29/327 (8%)
Query: 42 IIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLR-KNHLSELPGKLFISTINLSTMDL 100
I VD + + + +++ L LT+++L ++++LP L+ L ++++
Sbjct: 464 NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNI 522
Query: 101 SQNLIKTLPSTF---------FKGAIRLTVVQLSYNAIESLPANV-FHDLISLEELDLSQ 150
+ N + ++ + + YN +E PA+ ++ L LD
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582
Query: 151 NVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGL-F 209
N + ++ F L LKL N+I ++P ++ L +N+L +I
Sbjct: 583 NKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNA 640
Query: 210 NYFKHLTFLELSENWISSLNGDEFS-----QLTSLKELHLGQNYIETIPAGSFANLQSLE 264
+ ++ S N I S + + + + L N I+ P FA +
Sbjct: 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700
Query: 265 KLFLYSNNIQELHA-------GTFAGLTNLTALFLNNNLLRYL-DTKAFEPMLHLKKLQL 316
+ L +N + + G + LT + L N L L D + +L + +
Sbjct: 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDV 760
Query: 317 DSNKLQYLATDSLSLLPNLITLKLAKN 343
N L +
Sbjct: 761 SYNCFSSF-PTQPLNSSQLKAFGIRHQ 786
Score = 154 bits (391), Expect = 3e-41
Identities = 44/308 (14%), Positives = 94/308 (30%), Gaps = 25/308 (8%)
Query: 52 LGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPST 111
++ + KD+ L K T++ N ++ + + L + + +
Sbjct: 409 NRNPEMKPIKKDSRISL-KDTQIGNLTNRITFISKAIQ-RLTKLQIIYFANSPFTYDNIA 466
Query: 112 FFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLK 171
+ Y + +L L +++L + + L+ L
Sbjct: 467 -----VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521
Query: 172 LQSNRINQLP---------PGIFDDLKYLDFLSLRNNRLSFI-RPGLFNYFKHLTFLELS 221
+ NR D + + N L L L+
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581
Query: 222 ENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL-HAGT 280
N + L + F L +L L N IE IP A +E L N ++ + +
Sbjct: 582 HNKVRHL--EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639
Query: 281 FAGLTNLTALFLNNNLLRYLDTKAFEPM-----LHLKKLQLDSNKLQYLATDSLSLLPNL 335
+ + ++ + N + M ++ + L N++Q T+ + +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699
Query: 336 ITLKLAKN 343
T+ L+ N
Sbjct: 700 STIILSNN 707
Score = 146 bits (369), Expect = 3e-38
Identities = 42/310 (13%), Positives = 96/310 (30%), Gaps = 29/310 (9%)
Query: 55 NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ-----NLIKTLP 109
K +L L ++ ++ P I + ++ +Q N I +
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFIS 441
Query: 110 STFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKR 169
+ +L ++ + + + E+ + + ++S + L
Sbjct: 442 KAIQR-LTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELSWSNLKDLTD 495
Query: 170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR---------PGLFNYFKHLTFLEL 220
++L + P DL L L++ NR + + +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555
Query: 221 SENWISSL-NGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAG 279
N + ++ L L N + + +F L L L N I+E+
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPED 613
Query: 280 TFAGLTNLTALFLNNNLLRYL-DTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLP----- 333
A + L ++N L+Y+ + + + + + NK+ + +
Sbjct: 614 FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673
Query: 334 NLITLKLAKN 343
N T+ L+ N
Sbjct: 674 NASTVTLSYN 683
Score = 107 bits (268), Expect = 3e-25
Identities = 36/232 (15%), Positives = 77/232 (33%), Gaps = 30/232 (12%)
Query: 38 PFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP-------GKLFI 90
D ++ + L N++ + F ++ + L N ++ +P +
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725
Query: 91 STINLSTMDLSQNLIKTLPSTFFKGAI-RLTVVQLSYNAIESLPANVFHDLISLEELDLS 149
+T L+T+DL N + +L F + L+ + +SYN S P + L+ +
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN-SSQLKAFGIR 784
Query: 150 QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLF 209
+ NRI + P L L + +N + + L
Sbjct: 785 HQ------------------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL- 825
Query: 210 NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ 261
L L++++N S++ L + + I ++
Sbjct: 826 --TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875
Score = 55.3 bits (133), Expect = 2e-08
Identities = 12/122 (9%), Positives = 28/122 (22%), Gaps = 3/122 (2%)
Query: 223 NWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFA 282
+ G + + L L + + L L+ L +++
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 283 GLTNLTALFLNNNLLRYLDTKAFEPML-HLKKLQLDSNKLQYLATDSLSLLPNLITLKLA 341
+ +R K F L L + + + + + L
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLK 426
Query: 342 KN 343
Sbjct: 427 DT 428
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 179 bits (456), Expect = 4e-53
Identities = 58/222 (26%), Positives = 91/222 (40%), Gaps = 12/222 (5%)
Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGL-FNYFKHLTFLELSENWISSLNGD 231
++ +P + LD L +N LS +R +L L LS N ++ ++ +
Sbjct: 26 SKQQLPNVPQSLPSYTALLD---LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE 82
Query: 232 EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALF 291
F + +L+ L L N++ T+ F++LQ+LE L LY+N+I + F + L L+
Sbjct: 83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142
Query: 292 LNNNLLRYLDTKAFEPMLHLKKLQ---LDSNKLQYLATDSLSLLPNL--ITLKLAKNPWH 346
L+ N + + + L KL L SNKL+ L L LP L L NP
Sbjct: 143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202
Query: 347 CDC-AILYMARWLRANRRKV--WDSKPTCRGPGNLGGKSVED 385
CDC + W V + C L D
Sbjct: 203 CDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLD 244
Score = 153 bits (387), Expect = 5e-43
Identities = 70/259 (27%), Positives = 105/259 (40%), Gaps = 16/259 (6%)
Query: 14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKD-AFTGLYKLT 72
C C C LSC KQ + +P +P ++DL N LS L + T L L
Sbjct: 12 CPANCLCASN--ILSCSKQQLPNVPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLH 67
Query: 73 ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL 132
L L NHL+ + + F+ NL +DLS N + TL F L V+ L N I +
Sbjct: 68 SLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV 127
Query: 133 PANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLK---LQSNRINQLPPGIFDDLK 189
N F D+ L++L LSQN ++ L +L L SN++ +LP L
Sbjct: 128 DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187
Query: 190 YL--DFLSLRNNRLSFIRPGLFNYFKHLTFLELS-----ENWISSLNGDEFSQLTSLKEL 242
+ L L NN L L+ F H + +LS + + ++ + + SL
Sbjct: 188 AWVKNGLYLHNNPLE-CDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFF 246
Query: 243 HLGQNYIETIPAGSFANLQ 261
+ + A L
Sbjct: 247 NCSEYKESAWEAHLGDTLT 265
Score = 143 bits (361), Expect = 3e-39
Identities = 50/206 (24%), Positives = 82/206 (39%), Gaps = 27/206 (13%)
Query: 72 TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTL-PSTFFKGAIRLTVVQLSYNAIE 130
L K L +P L T L DLS N + L L + LS+N +
Sbjct: 21 NILSCSKQQLPNVPQSLPSYTALL---DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77
Query: 131 SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKY 190
+ + F + +L LDLS N L ++ FS + +L+ L L +N I + F+D+
Sbjct: 78 FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137
Query: 191 LDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE 250
L L L N++S L + ++L L L L N ++
Sbjct: 138 LQKLYLSQNQISRFPVELI---------------------KDGNKLPKLMLLDLSSNKLK 176
Query: 251 TIPAGSFANLQSLEK--LFLYSNNIQ 274
+P L + K L+L++N ++
Sbjct: 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 181 bits (462), Expect = 1e-52
Identities = 58/299 (19%), Positives = 111/299 (37%), Gaps = 39/299 (13%)
Query: 62 KDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTV 121
+ + K+ + L + L S N+ +DLS N + + + +L +
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
+ LS N + L +L LDL+ N + + G S++ L +N I+++
Sbjct: 63 LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISRVS 115
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN-GDEFSQLTSLK 240
K + L NN+++ +R + +L+L N I ++N + + +L+
Sbjct: 116 CSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172
Query: 241 ELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYL 300
L+L N+I + L+ L L SN + + F +T + L NN L +
Sbjct: 173 HLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI 229
Query: 301 DTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLR 359
+ +L NL L N +HC + ++ R
Sbjct: 230 E-------------------------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263
Score = 175 bits (446), Expect = 2e-50
Identities = 48/297 (16%), Positives = 95/297 (31%), Gaps = 16/297 (5%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
++ + + L + + EL L N LS++ L ++LS N++
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72
Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSL 167
+ L + L+ N ++ L S+E L + N ++ +
Sbjct: 73 TLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQ---GK 122
Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPG-LFNYFKHLTFLELSENWIS 226
K + L +N+I L + +L L+ N + + L L L L N+I
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182
Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
+ G LK L L N + + F + + + L +N + + N
Sbjct: 183 DVKGQVV--FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQN 238
Query: 287 LTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
L L N + F + + + ++ L +
Sbjct: 239 LEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294
Score = 147 bits (372), Expect = 8e-40
Identities = 48/315 (15%), Positives = 87/315 (27%), Gaps = 37/315 (11%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
+ N +S +S G + L N ++ L + +DL N I T
Sbjct: 102 ETLHAANNNISRVSCSRGQGK---KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158
Query: 108 LP-STFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ + + L + L YN I + V L+ LDLS N L + F
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAG 215
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
+ + L++N++ + + L+ LR N F + K+ +++ +
Sbjct: 216 VTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVK 273
Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ------------------------- 261
L G + T H G E +PA L
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333
Query: 262 ---SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDS 318
++ + + L L + L +
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393
Query: 319 NKLQYLATDSLSLLP 333
L + P
Sbjct: 394 VGQIELQHATEEQSP 408
Score = 88.8 bits (220), Expect = 2e-19
Identities = 33/240 (13%), Positives = 61/240 (25%), Gaps = 8/240 (3%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
I L N+L + K A L LR N + F S N +++ +K
Sbjct: 217 TWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAKQTVKK 274
Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISL-----EELDLSQNVLTSIQYGTFS 162
L + T+ E LPA LI+L L + ++ +
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN 334
Query: 163 GMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSE 222
+ + + + + + L + L L
Sbjct: 335 QA-RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393
Query: 223 NWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFA 282
L Q + + Y E ++ +Y + +L
Sbjct: 394 VGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENAR 453
Score = 81.4 bits (201), Expect = 5e-17
Identities = 22/234 (9%), Positives = 66/234 (28%), Gaps = 9/234 (3%)
Query: 47 IRVIDLGINQLSTLS-KDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
+ DL N + +D F+ ++ + + +L G+ +
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTVPTLGHYGAYCC 296
Query: 106 KTLPSTFFKGAIRLTVVQ-----LSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGT 160
+ LP+ F I L + + E L + E+D + ++
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN-QARQREIDALKEQYRTVIDQV 355
Query: 161 FSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLEL 220
+ L+ + +++ LD + ++ +
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAI 415
Query: 221 SENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQ 274
+ + + Q ++++ + Q+ + + + + L +
Sbjct: 416 VKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469
Score = 42.5 bits (100), Expect = 2e-04
Identities = 21/135 (15%), Positives = 37/135 (27%)
Query: 21 RPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNH 80
R E LS + E L ++ R ID Q T+ L+ +K
Sbjct: 312 RKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371
Query: 81 LSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDL 140
L E + L L + + + + E
Sbjct: 372 LDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQN 431
Query: 141 ISLEELDLSQNVLTS 155
++ + D+ Q+ T
Sbjct: 432 NAIRDWDMYQHKETQ 446
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 169 bits (429), Expect = 1e-50
Identities = 62/223 (27%), Positives = 92/223 (41%), Gaps = 30/223 (13%)
Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDE 232
+ + ++P + + + + L N + I PG F+ +K L ++LS N IS L D
Sbjct: 19 RGKGLTEIPTNLPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA 75
Query: 233 FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFL 292
F L SL L L N I +P F L SL+ L L +N I L F L NL L L
Sbjct: 76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135
Query: 293 NNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAIL 352
+N L+ + F P L + T+ LA+NP+ CDC +
Sbjct: 136 YDNKLQTIAKGTFSP------------------------LRAIQTMHLAQNPFICDCHLK 171
Query: 353 YMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL-CEG 394
++A +L N + S C P L K + + C
Sbjct: 172 WLADYLHTNPIET--SGARCTSPRRLANKRIGQIKSKKFRCSA 212
Score = 131 bits (332), Expect = 2e-36
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 4/162 (2%)
Query: 14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTE 73
C C C + + C + + E+P + +P I I L N + + AF+ KL
Sbjct: 5 CPAACTCSN--NIVDCRGKGLTEIPTN--LPETITEIRLEQNTIKVIPPGAFSPYKKLRR 60
Query: 74 LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP 133
+ L N +SEL F +L+++ L N I LP + F+G L ++ L+ N I L
Sbjct: 61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120
Query: 134 ANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
+ F DL +L L L N L +I GTFS + +++ + L N
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 127 bits (322), Expect = 5e-35
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 3/143 (2%)
Query: 81 LSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDL 140
L+E+P L + + L QN IK +P F +L + LS N I L + F L
Sbjct: 23 LTEIPTNLPETITEI---RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79
Query: 141 ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR 200
SL L L N +T + F G++SL+ L L +N+IN L F DL L+ LSL +N+
Sbjct: 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139
Query: 201 LSFIRPGLFNYFKHLTFLELSEN 223
L I G F+ + + + L++N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 171 bits (437), Expect = 3e-50
Identities = 66/298 (22%), Positives = 128/298 (42%), Gaps = 21/298 (7%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
+ ++L NQ++ +S + L KLT L + N ++++ + NL + L+++ I
Sbjct: 68 LEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNIS 123
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ ++ + L N S + + + + L L ++++ + + + +
Sbjct: 124 DISP--LANLTKMYSLNLGANHNLSDLSPLSN-MTGLNYLTVTESKVKDVT--PIANLTD 178
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
L L L N+I + P L L + + N+++ I P L L++ N I+
Sbjct: 179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT 234
Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
L+ + L+ L L +G N I I A +L L+ L + SN I ++ L+
Sbjct: 235 DLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDISV--LNNLSQ 288
Query: 287 LTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
L +LFLNNN L D + + +L L L N + + L+ L + + A
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPLASLSKMDSADFANQV 344
Score = 156 bits (396), Expect = 3e-44
Identities = 60/294 (20%), Positives = 122/294 (41%), Gaps = 26/294 (8%)
Query: 50 IDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLP 109
+ INQ+ + L + L+K ++++ + + +++ + ++ + ++
Sbjct: 8 LPAPINQIFPDA-----DLAEGIRAVLQKASVTDVVTQEELE--SITKLVVAGEKVASIQ 60
Query: 110 STFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKR 169
+ L + L+ N I + +L+ L L + N +T I + +L+
Sbjct: 61 G--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRE 114
Query: 170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229
L L + I+ + P +L + L+L N L N L +L ++E+ + +
Sbjct: 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSN-MTGLNYLTVTESKVKDV- 170
Query: 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTA 289
+ LT L L L N IE I A+L SL Y N I ++ A +T L +
Sbjct: 171 -TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNS 225
Query: 290 LFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
L + NN + D + L L++ +N++ + +++ L L L + N
Sbjct: 226 LKIGNNKIT--DLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSN 275
Score = 154 bits (392), Expect = 1e-43
Identities = 64/297 (21%), Positives = 124/297 (41%), Gaps = 23/297 (7%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
L ++ + L +T+L + ++ + G NL ++L+ N I
Sbjct: 24 GIRAVLQKASVTDVV--TQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQIT 79
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ ++LT + + N I + A +L +L EL L+++ ++ I + +
Sbjct: 80 DISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDIS--PLANLTK 133
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
+ L L +N + ++ L++L++ +++ + P L L L+ N I
Sbjct: 134 MYSLNLGANHNLSDLSPLS-NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190
Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
+ + LTSL N I I AN+ L L + +N I +L A L+
Sbjct: 191 DI--SPLASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLSP--LANLSQ 244
Query: 287 LTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
LT L + N + ++ A + + LK L + SN++ + L+ L L +L L N
Sbjct: 245 LTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN 297
Score = 147 bits (374), Expect = 4e-41
Identities = 59/252 (23%), Positives = 102/252 (40%), Gaps = 17/252 (6%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
+R + L + +S +S L K+ L L NH L + L+ + ++++ +K
Sbjct: 112 LRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLSPLS-NMTGLNYLTVTESKVK 168
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ L + L+YN IE + L SL N +T I + M
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT--PVANMTR 222
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
L LK+ +N+I L P +L L +L + N++S I L L + N IS
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQIS 278
Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
+ + L+ L L L N + L +L LFL N+I ++ A L+
Sbjct: 279 DI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK 334
Query: 287 LTALFLNNNLLR 298
+ + N +++
Sbjct: 335 MDSADFANQVIK 346
Score = 133 bits (337), Expect = 9e-36
Identities = 49/249 (19%), Positives = 102/249 (40%), Gaps = 19/249 (7%)
Query: 95 LSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLT 154
+T+ I + L ++ + +L S+ +L ++ +
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57
Query: 155 SIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKH 214
SIQ + +L+ L L N+I + P +L L L + N+++ I +
Sbjct: 58 SIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTN 111
Query: 215 LTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQ 274
L L L+E+ IS + + LT + L+LG N+ + + +N+ L L + + ++
Sbjct: 112 LRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK 168
Query: 275 ELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPN 334
++ A LT+L +L LN N + + + L N++ + ++ +
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQITDI--TPVANMTR 222
Query: 335 LITLKLAKN 343
L +LK+ N
Sbjct: 223 LNSLKIGNN 231
Score = 125 bits (316), Expect = 7e-33
Identities = 44/229 (19%), Positives = 95/229 (41%), Gaps = 15/229 (6%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
+ ++LG N + + + L L + ++ + ++ + +L ++ L+ N I+
Sbjct: 134 MYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ L N I + ++ L L + N +T + + +
Sbjct: 191 DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS--PLANLSQ 244
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
L L++ +N+I+ + DL L L++ +N++S I N L L L+ N +
Sbjct: 245 LTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLG 300
Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE 275
+ + + LT+L L L QN+I I A+L ++ + I++
Sbjct: 301 NEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 163 bits (414), Expect = 2e-48
Identities = 53/224 (23%), Positives = 94/224 (41%), Gaps = 31/224 (13%)
Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRP-GLFNYFKHLTFLELSENWISSLNGD 231
+ ++N++P I L L NN + + G+F L + S N I+ +
Sbjct: 19 SNQKLNKIPEHIPQYTAELR---LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG 75
Query: 232 EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALF 291
F + + E+ L N +E + F L+SL+ L L SN I + +F GL+++ L
Sbjct: 76 AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135
Query: 292 LNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAI 351
L +N + + AF+ + L L L +N P++C+C +
Sbjct: 136 LYDNQITTVAPGAFDTLHSLSTLNLLAN------------------------PFNCNCYL 171
Query: 352 LYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL-CEG 394
++ WLR R P C+ P L ++D++ D C+
Sbjct: 172 AWLGEWLRKKRIVT--GNPRCQKPYFLKEIPIQDVAIQDFTCDD 213
Score = 125 bits (316), Expect = 3e-34
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQSNRIN 178
T V S + +P ++ EL L+ N T ++ G F + L+++ +N+I
Sbjct: 14 TTVDCSNQKLNKIPEHIPQYT---AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT 70
Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
+ G F+ ++ + L +NRL ++ +F + L L L N I+ + D F L+S
Sbjct: 71 DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130
Query: 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
++ L L N I T+ G+F L SL L L +N
Sbjct: 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 122 bits (309), Expect = 4e-33
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 5/163 (3%)
Query: 14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDA-FTGLYKLT 72
C CRC T+ C Q + ++P IP + L N+ + L F L +L
Sbjct: 5 CPEKCRCEGT--TVDCSNQKLNKIPEH--IPQYTAELRLNNNEFTVLEATGIFKKLPQLR 60
Query: 73 ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL 132
++ N ++++ F ++ + L+ N ++ + FKG L + L N I +
Sbjct: 61 KINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV 120
Query: 133 PANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
+ F L S+ L L N +T++ G F ++SL L L +N
Sbjct: 121 GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 121 bits (305), Expect = 1e-32
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 4/144 (2%)
Query: 81 LSELPGKLFISTINLSTMDLSQNLIKTLPST-FFKGAIRLTVVQLSYNAIESLPANVFHD 139
L+++P + T L L+ N L +T FK +L + S N I + F
Sbjct: 23 LNKIPEHIPQYTAEL---RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG 79
Query: 140 LISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
+ E+ L+ N L ++Q+ F G+ SLK L L+SNRI + F L + LSL +N
Sbjct: 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139
Query: 200 RLSFIRPGLFNYFKHLTFLELSEN 223
+++ + PG F+ L+ L L N
Sbjct: 140 QITTVAPGAFDTLHSLSTLNLLAN 163
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 153 bits (389), Expect = 1e-44
Identities = 49/284 (17%), Positives = 95/284 (33%), Gaps = 58/284 (20%)
Query: 13 CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLT 72
C PC C E +D++ +P +P + + L L T+ AF+ L ++
Sbjct: 3 CSSPPCECHQEE-DFRVTCKDIQRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNIS 58
Query: 73 ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL 132
+ +S + ++ L
Sbjct: 59 RI------------------------YVSID-----------------------VTLQQL 71
Query: 133 PANVFHDLISLEELDLSQN-VLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIF-DDLKY 190
++ F++L + +++ LT I + LK L + + + P
Sbjct: 72 ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDI 131
Query: 191 LDFLSL-RNNRLSFIRPGLFNYFKHLTF-LELSENWISSLNGDEFSQLTSLKELHLGQN- 247
L + N ++ I F + T L+L N +S+ G F+ T L ++L +N
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN-GTKLDAVYLNKNK 190
Query: 248 YIETIPAGSFANLQS-LEKLFLYSNNIQELHAGTFAGLTNLTAL 290
Y+ I +F + S L + ++ L + L L A
Sbjct: 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234
Score = 146 bits (371), Expect = 6e-42
Identities = 49/234 (20%), Positives = 85/234 (36%), Gaps = 14/234 (5%)
Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN-RI 177
+++ I+ +P+ S + L L + L +I FS + ++ R+ + + +
Sbjct: 13 EEDFRVTCKDIQRIPSL----PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68
Query: 178 NQLPPGIFDDLKYLDFLSLRNNR-LSFIRPGLFNYFKHLTFLELSENWISSLNGDEF-SQ 235
QL F +L + + +RN R L++I P L FL + +
Sbjct: 69 QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128
Query: 236 LTSLKELHLGQN-YIETIPAGSFANLQS-LEKLFLYSNNIQELHAGTFAGLTNLTALFLN 293
L + N Y+ +IP +F L + L LY+N + F G
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188
Query: 294 NNLLRYLDTKAFEPMLH-LKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWH 346
N L +D AF + L + + L + L L LI N W
Sbjct: 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR----NTWT 238
Score = 102 bits (257), Expect = 1e-25
Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 7/157 (4%)
Query: 48 RVIDLGINQ-LSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFI-STINLSTMDLSQNL- 104
I++ + L+ + DA L L L + L P + ST ++++ N
Sbjct: 83 THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142
Query: 105 IKTLPSTFFKGAIRLTVV-QLSYNAIESLPANVFHDLISLEELDLSQN-VLTSIQYGTFS 162
+ ++P F+G T+ +L N S+ F+ L+ + L++N LT I F
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFG 201
Query: 163 GMYS-LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRN 198
G+YS L + + LP + LK L +
Sbjct: 202 GVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 153 bits (388), Expect = 3e-44
Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 30/222 (13%)
Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
++L LQS + L F L L +L+L N+L + G+F+ L L L+ N ++S
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNL 287
L F LT L +L+LG N ++++P+G F L L++L L +N +Q + AG F LTNL
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 288 TALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHC 347
L L+ N L+ + AF+ L KLQ T+ L N + C
Sbjct: 158 QTLSLSTNQLQSVPHGAFD---RLGKLQ---------------------TITLFGNQFDC 193
Query: 348 DCA-ILYMARWLRANRRKV--WDSKPTCRGPGNL---GGKSV 383
ILY+++W+R N KV + P + GK V
Sbjct: 194 SRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDGKVV 235
Score = 134 bits (338), Expect = 5e-37
Identities = 48/152 (31%), Positives = 77/152 (50%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
+ L + +L F L L L+L N L ++ G F + L L L +N++
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSL 239
LP G+FD L LD L L N+L + G+F+ L L L+ N + S+ F +LT+L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 240 KELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
+ L L N ++++P G+F L L+ + L+ N
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 129 bits (327), Expect = 2e-35
Identities = 65/188 (34%), Positives = 93/188 (49%), Gaps = 4/188 (2%)
Query: 14 CE--GPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKL 71
CE C C + C + ++ +P IP D +DL L+TLS F GL KL
Sbjct: 4 CETVTGCTCNEGKKEVDCQGKSLDSVPSG--IPADTEKLDLQSTGLATLSDATFRGLTKL 61
Query: 72 TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
T L L N L L +F L T+ L+ N + +LP F +L + L N ++S
Sbjct: 62 TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121
Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYL 191
LP+ VF L L+EL L+ N L SI G F + +L+ L L +N++ +P G FD L L
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181
Query: 192 DFLSLRNN 199
++L N
Sbjct: 182 QTITLFGN 189
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 160 bits (406), Expect = 1e-43
Identities = 61/298 (20%), Positives = 115/298 (38%), Gaps = 29/298 (9%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
+++ NQL AF KL L L N ++E+P T + + + N +K
Sbjct: 333 GMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391
Query: 108 LPSTFFKGAIR-LTVVQLSYNAIESLPANVFHD-------LISLEELDLSQNVLTSIQYG 159
+P+ F ++ ++ + SYN I S+ F I++ ++LS N ++
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451
Query: 160 TFSGMYSLKRLKLQSNRINQLPPGI-------FDDLKYLDFLSLRNNRLSFIRPGL-FNY 211
FS L + L N + ++P F + L + LR N+L+ +
Sbjct: 452 LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511
Query: 212 FKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYI-------ETIPAGSFANLQSLE 264
+L ++LS N S + ++LK + P SL
Sbjct: 512 LPYLVGIDLSYNSFSKFP-TQPLNSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLT 569
Query: 265 KLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQ 322
+L + SN+I++++ N++ L + +N +D P + L +K Q
Sbjct: 570 QLQIGSNDIRKVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624
Score = 159 bits (405), Expect = 1e-43
Identities = 58/328 (17%), Positives = 116/328 (35%), Gaps = 36/328 (10%)
Query: 48 RVIDLGINQLSTLSKDA--------FTGLYKLTELKLRKNHLSELPGKLFISTI-NLSTM 98
++I++ N+ + + K+ + + N+L P + + + L +
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335
Query: 99 DLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI-Q 157
+ N ++ F I+L + L+YN I +PAN +E L + N L I
Sbjct: 336 ECLYNQLEGKLPAFGS-EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394
Query: 158 YGTFSGMYSLKRLKLQSNRINQLPPGIFDD-------LKYLDFLSLRNNRLSFIRPGLFN 210
+ + + N I + FD + ++L NN++S LF+
Sbjct: 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454
Query: 211 YFKHLTFLELSENWISSLNGD-------EFSQLTSLKELHLGQNYIETIPAG-SFANLQS 262
L+ + L N ++ + + F L + L N + + L
Sbjct: 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514
Query: 263 LEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLL----RYLDT--KAFEPMLHLKKLQL 316
L + L N+ + + L + N R L + L +LQ+
Sbjct: 515 LVGIDLSYNSFSKFPTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573
Query: 317 DSNKLQYLATDSLSLLPNLITLKLAKNP 344
SN ++ + + + PN+ L + NP
Sbjct: 574 GSNDIRKV---NEKITPNISVLDIKDNP 598
Score = 156 bits (396), Expect = 2e-42
Identities = 55/328 (16%), Positives = 110/328 (33%), Gaps = 29/328 (8%)
Query: 42 IIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFISTINLSTMDL 100
I + Q + L LT++++ +LP L + + +++
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINV 280
Query: 101 SQNLIKTLPSTFFKGAI--------RLTVVQLSYNAIESLPA-NVFHDLISLEELDLSQN 151
+ N + ++ ++ + YN +++ P + L L+ N
Sbjct: 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340
Query: 152 VLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLF-N 210
L F L L L N+I ++P + ++ LS +N+L +I
Sbjct: 341 QLEGK-LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399
Query: 211 YFKHLTFLELSENWISSLNGDEFS-------QLTSLKELHLGQNYIETIPAGSFANLQSL 263
++ ++ S N I S++G F + ++ ++L N I P F+ L
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459
Query: 264 EKLFLYSNNIQELHAGT-------FAGLTNLTALFLNNNLLRYL-DTKAFEPMLHLKKLQ 315
+ L N + E+ + F LT++ L N L L D + +L +
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519
Query: 316 LDSNKLQYLATDSLSLLPNLITLKLAKN 343
L N L +
Sbjct: 520 LSYNSFSKF-PTQPLNSSTLKGFGIRNQ 546
Score = 142 bits (360), Expect = 2e-37
Identities = 51/280 (18%), Positives = 93/280 (33%), Gaps = 44/280 (15%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTI-NLSTMDLSQNLIK 106
++L NQ++ + + ++ L N L +P ++ +S +D S N I
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415
Query: 107 TLPSTFFKG-------AIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYG 159
++ F I ++ + LS N I P +F L ++L N+LT I
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475
Query: 160 T-------FSGMYSLKRLKLQSNRINQLPPGI-FDDLKYLDFLSLRNNRLSFIRPGLFNY 211
+ F Y L + L+ N++ +L L YL + L N S N
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN- 534
Query: 212 FKHLTFLELSENWISSLNG------DEFSQLTSLKELHLGQNYIETIPAGSFANLQSL-- 263
L + + N + + SL +L +G N I + N+ L
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDI 594
Query: 264 -------------------EKLFLYSNNIQELHAGTFAGL 284
L+ + Q++ +
Sbjct: 595 KDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDI 634
Score = 131 bits (331), Expect = 2e-33
Identities = 47/316 (14%), Positives = 104/316 (32%), Gaps = 26/316 (8%)
Query: 46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
D+ + + K + K T++ N+++ + + T L + +
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLT-KLRQFYMGNSPF 218
Query: 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQ-NVLTSIQYGTFSGM 164
Y + +L L ++++ LT + +
Sbjct: 219 VAENICEA-----WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKAL 272
Query: 165 YSLKRLKLQSNRINQLPPGI--------FDDLKYLDFLSLRNNRL-SFIRPGLFNYFKHL 215
++ + + NR + + + + N L +F K L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332
Query: 216 TFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE 275
LE N + F L L+L N I IPA + +E L N ++
Sbjct: 333 GMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391
Query: 276 LHAGTFAG-LTNLTALFLNNNLLRYLDTKAFEPM-------LHLKKLQLDSNKLQYLATD 327
+ A ++ ++A+ + N + +D K F+P+ +++ + L +N++ +
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451
Query: 328 SLSLLPNLITLKLAKN 343
S L ++ L N
Sbjct: 452 LFSTGSPLSSINLMGN 467
Score = 123 bits (312), Expect = 5e-31
Identities = 36/316 (11%), Positives = 93/316 (29%), Gaps = 28/316 (8%)
Query: 48 RVIDLGINQLST--LSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
+ D L + + + + K T+ + + N I
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195
Query: 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMY 165
+ + +L + + + + + E + +
Sbjct: 196 TFVSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW-----DNLK 249
Query: 166 SLKRLKLQS-NRINQLPPGIFDDLKYLDFLSLRNNRL--------SFIRPGLFNYFKHLT 216
L +++ + + +LP + L + +++ NR + + +
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308
Query: 217 FLELSENWISSLN-GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE 275
+ + N + + ++ L L N +E +F + L L L N I E
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE 367
Query: 276 LHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPML-HLKKLQLDSNKLQYLATDSLSLLP- 333
+ A + L +N L+Y+ + + + N++ + + L
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427
Query: 334 ------NLITLKLAKN 343
N+ ++ L+ N
Sbjct: 428 TPFKGINVSSINLSNN 443
Score = 119 bits (300), Expect = 2e-29
Identities = 41/309 (13%), Positives = 90/309 (29%), Gaps = 22/309 (7%)
Query: 50 IDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTI-NLSTMDLSQNLIKTL 108
+ L S DA L +L L L + I + + Q +
Sbjct: 86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY 145
Query: 109 PSTFFKGAIRLTVVQLSYNAIESLPA-----NVFHDLISLEELDLSQNVLTSIQYGTFSG 163
TF R L + I S P + ++ N +T +
Sbjct: 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS-KAVMR 204
Query: 164 MYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
+ L++ + ++ + + + + ++ K LT +E+
Sbjct: 205 LTKLRQFYMGNSPFVAENI-----CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259
Query: 224 WISSLNGDEFSQLTSLKELHLGQNYIETIPA--------GSFANLQSLEKLFLYSNNIQE 275
+ L ++ +++ N + + ++ +++ NN++
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319
Query: 276 LHA-GTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPN 334
+ + L L N L AF + L L L N++ + +
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGK-LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQ 378
Query: 335 LITLKLAKN 343
+ L A N
Sbjct: 379 VENLSFAHN 387
Score = 112 bits (283), Expect = 3e-27
Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 48/259 (18%)
Query: 48 RVIDLGINQLSTLSKDAFTG-LYKLTELKLRKNHLSELPGKLFIS-------TINLSTMD 99
+ N+L + + ++ + N + + GK F IN+S+++
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439
Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV-------FHDLISLEELDLSQNV 152
LS N I P F L+ + L N + +P N F + L +DL N
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499
Query: 153 LTSIQYG-TFSGMYSLKRLKLQSNRINQLPPGI--------------------------- 184
LT + + + L + L N ++ P
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559
Query: 185 --FDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKEL 242
L L + +N + + + +++ L++ +N S++
Sbjct: 560 EGITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMY 616
Query: 243 HLGQNYIETIPAGSFANLQ 261
L + + I +++
Sbjct: 617 MLFYDKTQDIRGCDALDIK 635
Score = 92.0 bits (229), Expect = 3e-20
Identities = 34/261 (13%), Positives = 74/261 (28%), Gaps = 37/261 (14%)
Query: 118 RLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTF-SGMYSLKRLKLQSNR 176
R+T + L + L LE L L + + G+ + + +
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 177 INQLPPGIFDDLKYLDFLSLRNNRLSFIR-----PGLFNYFKHLTFLELSENWISSLNGD 231
D DF L + ++ T + N I+ ++
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS-K 200
Query: 232 EFSQLTSLKELHLGQNYI--------------------ETIPAGSFANLQSLEKLFLYSN 271
+LT L++ ++G + +T + NL+ L + +Y+
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNC 259
Query: 272 NIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEP--------MLHLKKLQLDSNKLQY 323
L + + + N + + ++ + + N L+
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319
Query: 324 L-ATDSLSLLPNLITLKLAKN 343
SL + L L+ N
Sbjct: 320 FPVETSLQKMKKLGMLECLYN 340
Score = 60.4 bits (147), Expect = 5e-10
Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 7/137 (5%)
Query: 214 HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSF----ANLQSLEKLFLY 269
+T L L S D QLT L+ L LG + + + S E+
Sbjct: 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 270 SNNIQ--ELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATD 327
+ Q + ++L +N++ + K+ L ++ SN + ++ +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SK 200
Query: 328 SLSLLPNLITLKLAKNP 344
++ L L + +P
Sbjct: 201 AVMRLTKLRQFYMGNSP 217
Score = 50.8 bits (122), Expect = 5e-07
Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 6/120 (5%)
Query: 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTF-AGLTNLT 288
G + + L L + L LE L L S+ + G++
Sbjct: 74 GVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM 133
Query: 289 ALFLNNNLLRYLDTKAFEP-----MLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
+ + + + L K ++S+ Q S + + N
Sbjct: 134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 158 bits (401), Expect = 1e-43
Identities = 59/330 (17%), Positives = 117/330 (35%), Gaps = 35/330 (10%)
Query: 54 INQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTI---NLSTMDLSQNLIKTLPS 110
++ L+ L + L ++ N + ++ +T+ ++S + L L
Sbjct: 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269
Query: 111 TFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRL 170
L++ Q+ + + ++ ++ + + + + S + L
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329
Query: 171 KLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI--RPGLFNYFKHLTFLELSENWI-SS 227
+N + L L+ L L+ N+L + + K L L++S+N +
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389
Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNL 287
+ S SL L++ N + ++ L L+SN I+ + L L
Sbjct: 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVV-KLEAL 446
Query: 288 TALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHC 347
L + +N L+ + F+ L +L + L NPW C
Sbjct: 447 QELNVASNQLKSVPDGIFDR------------------------LTSLQKIWLHTNPWDC 482
Query: 348 DCA-ILYMARWLRANRRKVWDSKPTCRGPG 376
C I Y++RWL N +K S C G G
Sbjct: 483 SCPRIDYLSRWLNKNSQKEQGS-AKCSGSG 511
Score = 137 bits (346), Expect = 4e-36
Identities = 57/343 (16%), Positives = 109/343 (31%), Gaps = 45/343 (13%)
Query: 43 IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ 102
+ ++++ N +S L L KL L + N + L +F L +DLS
Sbjct: 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78
Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLP-ANVFHDLISLEELDLSQNVLTSIQYGTF 161
N + + L + LS+NA ++LP F ++ L+ L LS L
Sbjct: 79 NKLVKISCHPTVN---LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135
Query: 162 SGMY-------------------SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202
+ + L+ +S I F + + ++ N LS
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195
Query: 203 FIRPGLF-----------------NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLG 245
I+ L +LT + W S + + T++ +
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255
Query: 246 QNYIETIPA-----GSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYL 300
++ S +L++L + S+ + + +N+ + R +
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315
Query: 301 DTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
+ L +N L ++ L L TL L N
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358
Score = 136 bits (343), Expect = 1e-35
Identities = 45/231 (19%), Positives = 90/231 (38%), Gaps = 6/231 (2%)
Query: 45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL 104
I + L + T L L+ ++ + ++ N++ + + +
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311
Query: 105 IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQY--GTFS 162
+ + + S N + L LE L L N L + +
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371
Query: 163 GMYSLKRLKLQSNRINQ-LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELS 221
M SL++L + N ++ G K L L++ +N L+ + L+L
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLH 429
Query: 222 ENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNN 272
N I S+ +L +L+EL++ N ++++P G F L SL+K++L++N
Sbjct: 430 SNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479
Score = 103 bits (259), Expect = 2e-24
Identities = 49/265 (18%), Positives = 91/265 (34%), Gaps = 15/265 (5%)
Query: 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL 153
+ +D S+N + +P + + T++ +S N I L + L L L +S N +
Sbjct: 1 SEFLVDRSKNGLIHVPKDLSQ---KTTILNISQNYISELWTSDILSLSKLRILIISHNRI 57
Query: 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI-RPGLFNYF 212
+ F L+ L L N++ ++ L L L N + F
Sbjct: 58 QYLDISVFKFNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNM 114
Query: 213 KHLTFLELSENWISSLNGDEFSQLTSLKE-LHLGQNYIETIPAGSFANL--QSLEKLFLY 269
L FL LS + + + L K L LG+ Y E + +SL +F
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174
Query: 270 SNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSL 329
+ + + + NL + L + + L+ SN L +++
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN----LTLNNI 230
Query: 330 SLLPNLITLKLAKNPWHCDCAILYM 354
N ++ + WH +
Sbjct: 231 ETTWNSFI-RILQLVWHTTVWYFSI 254
Score = 98.0 bits (244), Expect = 2e-22
Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 6/160 (3%)
Query: 43 IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP--GKLFISTINLSTMDL 100
+D N L+ + L +L L L+ N L EL ++ +L +D+
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381
Query: 101 SQN-LIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYG 159
SQN + L + +S N + ++ LDL N + SI
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQ 439
Query: 160 TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
+ +L+ L + SN++ +P GIFD L L + L N
Sbjct: 440 VVK-LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 156 bits (397), Expect = 2e-43
Identities = 83/298 (27%), Positives = 134/298 (44%), Gaps = 25/298 (8%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
+ I + NQ++ ++ L LT L L N ++++ + NL+ ++LS N I
Sbjct: 92 LVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS 147
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ + G L + + P +L +LE LD+S N ++ I + + +
Sbjct: 148 DISA--LSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSDIS--VLAKLTN 200
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
L+ L +N+I+ + P L LD LSL N+L I +LT L+L+ N IS
Sbjct: 201 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQIS 256
Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
+L S LT L EL LG N I I A L +L L L N ++++ + L N
Sbjct: 257 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN 310
Query: 287 LTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
LT L L N + D + L++L +NK+ + SL+ L N+ L N
Sbjct: 311 LTYLTLYFNNIS--DISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQ 364
Score = 152 bits (387), Expect = 5e-42
Identities = 71/300 (23%), Positives = 123/300 (41%), Gaps = 25/300 (8%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
+ + L NQ++ + L L L+L N +S++ +L + +
Sbjct: 114 LTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD 169
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
P L + +S N + + L +LE L + N ++ I + +
Sbjct: 170 LKP---LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTN 222
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
L L L N++ + L L L L NN++S + P + LT L+L N IS
Sbjct: 223 LDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 278
Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
++ + LT+L L L +N +E I +NL++L L LY NNI ++ + LT
Sbjct: 279 NI--SPLAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP--VSSLTK 332
Query: 287 LTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWH 346
L LF NN + + + + ++ L N++ L L+ L + L L W
Sbjct: 333 LQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWT 388
Score = 142 bits (360), Expect = 3e-38
Identities = 72/297 (24%), Positives = 125/297 (42%), Gaps = 23/297 (7%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
++ + G NQ++ L L L L + N +S++ NL ++ + N I
Sbjct: 158 LQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 212
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ L + L+ N ++ + L +L +LDL+ N ++++ SG+
Sbjct: 213 DITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLA--PLSGLTK 266
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
L LKL +N+I+ + P L L L L N+L I P + K+LT+L L N IS
Sbjct: 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 322
Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
++ S LT L+ L N + + S ANL ++ L N I +L A LT
Sbjct: 323 DISP--VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTR 376
Query: 287 LTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
+T L LN+ + ++ + L +A ++S + + N
Sbjct: 377 ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWN 431
Score = 130 bits (330), Expect = 5e-34
Identities = 71/250 (28%), Positives = 115/250 (46%), Gaps = 21/250 (8%)
Query: 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL 153
L + + S ++T +Q I+S+ L +L +++ S N L
Sbjct: 25 EKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQL 80
Query: 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK 213
T I + L + + +N+I + P +L L L+L NN+++ I P
Sbjct: 81 TDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLT 134
Query: 214 HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNI 273
+L LELS N IS + S LTSL++L G + P ANL +LE+L + SN +
Sbjct: 135 NLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKV 189
Query: 274 QELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLP 333
++ A LTNL +L NN + D + +L +L L+ N+L+ + +L+ L
Sbjct: 190 SDI--SVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKDI--GTLASLT 243
Query: 334 NLITLKLAKN 343
NL L LA N
Sbjct: 244 NLTDLDLANN 253
Score = 127 bits (321), Expect = 9e-33
Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 18/259 (6%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
+ NQ+S ++ L L EL L N L ++ S NL+ +DL+ N I
Sbjct: 202 ESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN 257
Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSL 167
L G +LT ++L N I ++ L +L L+L++N L I S + +L
Sbjct: 258 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--PISNLKNL 311
Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
L L N I+ + P L L L NN++S + ++ +L N IS
Sbjct: 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISD 367
Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNL 287
L + LT + +L L P AN+ + + + T + +
Sbjct: 368 L--TPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP--ATISDGGSY 423
Query: 288 TALFLNNNLLRYLDTKAFE 306
T + NL Y + ++
Sbjct: 424 TEPDITWNLPSYTNEVSYT 442
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 150 bits (382), Expect = 3e-43
Identities = 62/247 (25%), Positives = 108/247 (43%), Gaps = 31/247 (12%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
L ++ ++L S++++ + + + S+ + +++ L L N+++
Sbjct: 22 IKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD 77
Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSL 239
+ +L L +L L N+L + G+F+ +L L L EN + SL F +LT+L
Sbjct: 78 I--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 240 KELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRY 299
L+L N ++++P G F L +L +L L N +Q L G F LT L L L N L+
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195
Query: 300 LDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWL 358
+ F+ L LQ + L NPW C C I Y++ W+
Sbjct: 196 VPDGVFD---RLTSLQ---------------------YIWLHDNPWDCTCPGIRYLSEWI 231
Query: 359 RANRRKV 365
+ V
Sbjct: 232 NKHSGVV 238
Score = 121 bits (306), Expect = 4e-32
Identities = 61/255 (23%), Positives = 100/255 (39%), Gaps = 53/255 (20%)
Query: 17 PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKL 76
P E + K+ + + I I + + ++ L + L L
Sbjct: 14 PDDAFAETIKANLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLAL 70
Query: 77 RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
N L ++ NL+ + L+ N +++LP+ F L + L N ++SLP V
Sbjct: 71 GGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 137 FHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSL 196
F L +L L+L+ N L S LP G+FD L L L L
Sbjct: 129 FDKLTNLTYLNLAHNQLQS------------------------LPKGVFDKLTNLTELDL 164
Query: 197 RNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS 256
N+L + G+F+ +LT LK+L L QN ++++P G
Sbjct: 165 SYNQLQSLPEGVFD------------------------KLTQLKDLRLYQNQLKSVPDGV 200
Query: 257 FANLQSLEKLFLYSN 271
F L SL+ ++L+ N
Sbjct: 201 FDRLTSLQYIWLHDN 215
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 135 bits (343), Expect = 7e-36
Identities = 64/315 (20%), Positives = 98/315 (31%), Gaps = 34/315 (10%)
Query: 32 QDMEELPFDQIIPVDI--RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLF 89
+ + F+ P D + +T + L LT L + ++++ G
Sbjct: 4 KAGQTQSFNDWFPDDNFASEVAAAFEMQATDTIS-EEQLATLTSLDCHNSSITDMTG--I 60
Query: 90 ISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS 149
L+ + + N I TL LT + N + +L L L L+
Sbjct: 61 EKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD 114
Query: 150 QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLF 209
N LT + S L L N + ++ L L N+ I
Sbjct: 115 TNKLTKL---DVSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKK--ITKLDV 166
Query: 210 NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLY 269
LT L+ S N I+ L+ SQ L L+ N I + L L
Sbjct: 167 TPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCS 220
Query: 270 SNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSL 329
SN + E+ LT LT + N L LD L L L + L
Sbjct: 221 SNKLTEI---DVTPLTQLTYFDCSVNPLTELDVSTLS---KLTTLHCIQTDLLEI---DL 271
Query: 330 SLLPNLITLKLAKNP 344
+ LI +
Sbjct: 272 THNTQLIYFQAEGCR 286
Score = 133 bits (337), Expect = 4e-35
Identities = 55/314 (17%), Positives = 101/314 (32%), Gaps = 45/314 (14%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
+ + N ++TL + LT L N L+ L L+ ++ N +
Sbjct: 66 LTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLT 119
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
L LT + + N + + L ELD N + +
Sbjct: 120 KLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITK--LDVTPQTQ 171
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
L L N+I +L K L+ L+ N ++ + N LTFL+ S N ++
Sbjct: 172 LTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLT 225
Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLE----------------KLFLYS 270
++ + LT L N + + + + L +L ++ +
Sbjct: 226 EID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA 282
Query: 271 NNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLS 330
+++ T L L + LD L L L++ +L L +S
Sbjct: 283 EGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTEL---DVS 336
Query: 331 LLPNLITLKLAKNP 344
L +L
Sbjct: 337 HNTKLKSLSCVNAH 350
Score = 128 bits (324), Expect = 3e-33
Identities = 53/338 (15%), Positives = 105/338 (31%), Gaps = 49/338 (14%)
Query: 22 PEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHL 81
+ L+C + L + + ++ N+L+ L + LT L +N L
Sbjct: 85 TNLTYLACDSNKLTNLDVTPLT--KLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTL 139
Query: 82 SELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLI 141
+E+ L+ +D N T +LT + S+N I L
Sbjct: 140 TEIDVSHNT---QLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELD---VSQNK 191
Query: 142 SLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
L L+ N +T + + L L SN++ ++ L L + N L
Sbjct: 192 LLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPL 245
Query: 202 SFIRPGLFNYFKHLTFLELSENWISSLN-------------------GDEFSQLTSLKEL 242
+ + LT L + + ++ + + T L L
Sbjct: 246 TELDVSTL---SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLL 302
Query: 243 HLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDT 302
I + + L L+L + + EL + T L +L N ++
Sbjct: 303 DCQAAGITELD---LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDFS- 355
Query: 303 KAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKL 340
+ + L + + ++L+ I +
Sbjct: 356 -SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP 392
Score = 109 bits (273), Expect = 2e-26
Identities = 43/250 (17%), Positives = 80/250 (32%), Gaps = 26/250 (10%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
+ +D N+++ L + L L N++++L I L+ +D S N +
Sbjct: 172 LTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLT 225
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ +LT S N + L L L L Q L I +
Sbjct: 226 EID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEI---DLTHNTQ 276
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
L + ++ L L + ++ + + L +L L+ ++
Sbjct: 277 LIYFQA--EGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELT 331
Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
L+ S T LK L +I+ S + +L F + T +
Sbjct: 332 ELD---VSHNTKLKSLSCVNAHIQDFS--SVGKIPALNNNFEAEGQTITMPKETLT-NNS 385
Query: 287 LTALFLNNNL 296
LT + L
Sbjct: 386 LTIAVSPDLL 395
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 136 bits (344), Expect = 2e-35
Identities = 55/343 (16%), Positives = 106/343 (30%), Gaps = 45/343 (13%)
Query: 39 FDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLF--------- 89
+ + + + I L L T L + H+
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276
Query: 90 -ISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
+ +N+ + +++ + + + L + + ++ + L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336
Query: 149 SQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGL 208
S + I S L N LK L L L+ N L +
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF-FKV 395
Query: 209 FNYFKHLTFLELSENWISSLNGDEFSQLT----SLKELHLGQNYIETIPAGSFANL-QSL 263
K+++ LE + ++SLN + + S+ L+L N + F L +
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM---LTGSVFRCLPPKV 452
Query: 264 EKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQY 323
+ L L++N I + L L L + +N L+ + F+
Sbjct: 453 KVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDR---------------- 495
Query: 324 LATDSLSLLPNLITLKLAKNPWHCDC-AILYMARWLRANRRKV 365
L +L + L NPW C C I Y++ W+ + V
Sbjct: 496 --------LTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVV 530
Score = 133 bits (335), Expect = 2e-34
Identities = 59/367 (16%), Positives = 115/367 (31%), Gaps = 46/367 (12%)
Query: 17 PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKL 76
P E + +++ +P D +P + + L N +S L + L +L L+L
Sbjct: 27 PFSNELES-MVDYSNRNLTHVPKD--LPPRTKALSLSQNSISELRMPDISFLSELRVLRL 83
Query: 77 RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP-AN 135
N + L +F+ +L +D+S N ++ + L + LS+N + LP
Sbjct: 84 SHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMA---SLRHLDLSFNDFDVLPVCK 140
Query: 136 VFHDLISLEELDLSQNVLTSIQYGTFSGMY------------------------SLKRLK 171
F +L L L LS + + ++ + L
Sbjct: 141 EFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200
Query: 172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYF----------KHLTFLELS 221
L + + + + L L L N +L+ F ++T +
Sbjct: 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260
Query: 222 ENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFAN-----LQSLEKLFLYSNNIQEL 276
W S+ +F ++ L++ I L+SL + +
Sbjct: 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFS 320
Query: 277 HAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLI 336
++ + L+ + ++ L N S L L
Sbjct: 321 KEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380
Query: 337 TLKLAKN 343
TL L +N
Sbjct: 381 TLILQRN 387
Score = 130 bits (328), Expect = 2e-33
Identities = 44/252 (17%), Positives = 92/252 (36%), Gaps = 10/252 (3%)
Query: 26 TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
T C + + + ++I + + + T L L ++
Sbjct: 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK 321
Query: 86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEE 145
L+ ++ LS + + T + + N L L+
Sbjct: 322 EALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT 381
Query: 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL----KYLDFLSLRNNRL 201
L L +N L + ++ L+ +N L +D + + L+L +N L
Sbjct: 382 LILQRNGLKNFF-KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440
Query: 202 SFIRPGLFNYF-KHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL 260
+ +F + L+L N I S+ + + L +L+EL++ N ++++P G F L
Sbjct: 441 T---GSVFRCLPPKVKVLDLHNNRIMSIP-KDVTHLQALQELNVASNQLKSVPDGVFDRL 496
Query: 261 QSLEKLFLYSNN 272
SL+ ++L+ N
Sbjct: 497 TSLQYIWLHDNP 508
Score = 72.2 bits (177), Expect = 8e-14
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 238 SLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLL 297
+ + +P ++L L N+I EL + L+ L L L++N +
Sbjct: 32 LESMVDYSNRNLTHVPKDLPPRTKALS---LSQNSISELRMPDISFLSELRVLRLSHNRI 88
Query: 298 RYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHC 347
R LD F L+ L + N+LQ ++ ++ +L L L+ N +
Sbjct: 89 RSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMA---SLRHLDLSFNDFDV 135
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 133 bits (337), Expect = 2e-34
Identities = 69/297 (23%), Positives = 122/297 (41%), Gaps = 44/297 (14%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
V+++G + L+TL +T L + N+L+ LP L T+++S N + +
Sbjct: 43 AVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLPALPP----ELRTLEVSGNQLTS 95
Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSL 167
LP G + L++ + +LP+ L +L + N LTS+ L
Sbjct: 96 LPVL-PPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLTSLP----VLPPGL 143
Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
+ L + N++ LP + L L NN+L+ + L L +S+N ++S
Sbjct: 144 QELSVSDNQLASLPALPSE----LCKLWAYNNQLTSLPMLPSG----LQELSVSDNQLAS 195
Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNL 287
L + + L +L N + ++P A L++L + N + L + L
Sbjct: 196 L----PTLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSL----PVLPSEL 243
Query: 288 TALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
L ++ N L L L L + N+L L +SL L + T+ L NP
Sbjct: 244 KELMVSGNRLTSLP----MLPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNP 295
Score = 132 bits (333), Expect = 7e-34
Identities = 68/298 (22%), Positives = 108/298 (36%), Gaps = 40/298 (13%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
R +++ NQL++L GL +L+ HL LP L + + N + +
Sbjct: 84 RTLEVSGNQLTSLP-VLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLTS 135
Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSL 167
LP L + +S N + SLPA L +L N LTS+ L
Sbjct: 136 LPVLPPG----LQELSVSDNQLASLPAL----PSELCKLWAYNNQLTSL----PMLPSGL 183
Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
+ L + N++ LP + L L NNRL+ + L L +S N ++S
Sbjct: 184 QELSVSDNQLASLPTLPSE----LYKLWAYNNRLTSLPALPSG----LKELIVSGNRLTS 235
Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNL 287
L + LKEL + N + ++P L L +Y N + L L++
Sbjct: 236 LP----VLPSELKELMVSGNRLTSLP----MLPSGLLSLSVYRNQLTRLPES-LIHLSSE 286
Query: 288 TALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW 345
T + L N L + + + S + S L LA W
Sbjct: 287 TTVNLEGNPLSERT---LQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341
Score = 127 bits (321), Expect = 2e-32
Identities = 60/274 (21%), Positives = 110/274 (40%), Gaps = 43/274 (15%)
Query: 70 KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAI 129
L + ++ L+ LP L +++T+ + N + +LP+ + L +++S N +
Sbjct: 41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPALPPE----LRTLEVSGNQL 93
Query: 130 ESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLK 189
SLP L+ L L ++ L +L + N++ LP
Sbjct: 94 TSLPVL-PPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLPVLPPG--- 142
Query: 190 YLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYI 249
L LS+ +N+L+ + L L N ++SL + L+EL + N +
Sbjct: 143 -LQELSVSDNQLASLPALPSE----LCKLWAYNNQLTSLP----MLPSGLQELSVSDNQL 193
Query: 250 ETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPML 309
++P L KL+ Y+N + L A + L L ++ N L L
Sbjct: 194 ASLPTL----PSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VLPS 241
Query: 310 HLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
LK+L + N+L L L L++L + +N
Sbjct: 242 ELKELMVSGNRLTSLP----MLPSGLLSLSVYRN 271
Score = 108 bits (271), Expect = 9e-26
Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 35/226 (15%)
Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
V+ + + + +LP + + L + N LTS+ + L+ L++ N++
Sbjct: 42 NAVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLP----ALPPELRTLEVSGNQLT 94
Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
LP L L S L + L L + N ++SL
Sbjct: 95 SLPVLPP-GLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLP----VLPPG 142
Query: 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLR 298
L+EL + N + ++PA L KL+ Y+N + L + L L +++N L
Sbjct: 143 LQELSVSDNQLASLPAL----PSELCKLWAYNNQLTSL----PMLPSGLQELSVSDNQLA 194
Query: 299 YLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
L L KL +N+L L +L L L ++ N
Sbjct: 195 SLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNR 232
Score = 108 bits (270), Expect = 1e-25
Identities = 56/255 (21%), Positives = 90/255 (35%), Gaps = 32/255 (12%)
Query: 43 IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ 102
+P + + + NQL++L L EL + N L+ LP L +
Sbjct: 119 LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPALPS----ELCKLWAYN 170
Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFS 162
N + +LP L + +S N + SLP L +L N LTS+ +
Sbjct: 171 NQLTSLPMLPSG----LQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP----A 218
Query: 163 GMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSE 222
LK L + NR+ LP +LK L + NRL+ + L L +
Sbjct: 219 LPSGLKELIVSGNRLTSLPVLP-SELKELM---VSGNRLTSLPMLPSG----LLSLSVYR 270
Query: 223 NWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFA 282
N ++ L + L+S ++L N + + + S YS I +
Sbjct: 271 NQLTRLP-ESLIHLSSETTVNLEGNPLSERTLQALREITSAP---GYSGPIIRFDMAGAS 326
Query: 283 GLTNLTALFLNNNLL 297
AL L
Sbjct: 327 APRETRALHLAAADW 341
Score = 88.4 bits (219), Expect = 4e-19
Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 30/201 (14%)
Query: 143 LEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202
EE V+ ++ +G L + + + LP + + L + +N L+
Sbjct: 21 AEESRGRAAVVQKMRACLNNG---NAVLNVGESGLTTLPDCLPAHITTLV---IPDNNLT 74
Query: 203 FIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQS 262
+ L LE+S N ++SL L L ++ +P
Sbjct: 75 SLPALPPE----LRTLEVSGNQLTSLP-VLPPGLLELSIFSNPLTHLPALP-------SG 122
Query: 263 LEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQ 322
L KL+++ N + L L L +++N L L L KL +N+L
Sbjct: 123 LCKLWIFGNQLTSLP----VLPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLT 174
Query: 323 YLATDSLSLLPNLITLKLAKN 343
L L L L ++ N
Sbjct: 175 SL----PMLPSGLQELSVSDN 191
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 128 bits (323), Expect = 3e-34
Identities = 54/267 (20%), Positives = 105/267 (39%), Gaps = 20/267 (7%)
Query: 55 NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFK 114
++ + D L ++ K+++++ ++T+ + T+ +
Sbjct: 7 TAINVIFPDP--ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIE--GVQ 60
Query: 115 GAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQS 174
L ++L N I L +L + EL+LS N L ++ +G+ S+K L L S
Sbjct: 61 YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTS 116
Query: 175 NRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFS 234
+I + P L L L L N+++ I P +L +L + +S L +
Sbjct: 117 TQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LA 170
Query: 235 QLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN 294
L+ L L N I I A+L +L ++ L +N I ++ A +NL + L N
Sbjct: 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
Query: 295 NLLRYLDTKAFEPMLHLKKLQLDSNKL 321
+ ++ ++ S
Sbjct: 227 QTITNQPVFYNNNLVVPNVVKGPSGAP 253
Score = 124 bits (312), Expect = 1e-32
Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 18/226 (7%)
Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
+ + + DL + L +T+I+ + +L L+L+ N+I
Sbjct: 21 AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQIT 76
Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
L P +L + L L N L + + + L+L+ I+ + + L++
Sbjct: 77 DLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LAGLSN 130
Query: 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLR 298
L+ L+L N I I A L +L+ L + + + +L A L+ LT L ++N +
Sbjct: 131 LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186
Query: 299 YLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
D + +L ++ L +N++ + L+ NL + L
Sbjct: 187 --DISPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQT 228
Score = 111 bits (280), Expect = 3e-28
Identities = 49/260 (18%), Positives = 104/260 (40%), Gaps = 18/260 (6%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
I + ++T+ L L L+L+ N +++L + ++ ++LS N +K
Sbjct: 43 ITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK 98
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ + G + + L+ I + L +L+ L L N +T+I +G+ +
Sbjct: 99 NVSA--IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTN 152
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
L+ L + + +++ L P +L L L +N++S I P +L + L N IS
Sbjct: 153 LQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS 208
Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
+ + ++L + L I P NL + + + T +
Sbjct: 209 DV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIAPATISDNGT 264
Query: 287 LTALFLNNNLLRYLDTKAFE 306
+ L NL +++ ++
Sbjct: 265 YASPNLTWNLTSFINNVSYT 284
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 130 bits (329), Expect = 6e-34
Identities = 66/297 (22%), Positives = 116/297 (39%), Gaps = 42/297 (14%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
++L LS+L + L L N L+ELP +L S +L + + +
Sbjct: 73 AHELELNNLGLSSLPEL----PPHLESLVASCNSLTELP-ELPQSLKSLLVDNNNLKALS 127
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
LP L + +S N +E LP + L+ +D+ N L + S
Sbjct: 128 DLPPL-------LEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKL----PDLPPS 174
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
L+ + +N++ +LP +L +L + NN L + + L + N +
Sbjct: 175 LEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDLPLS----LESIVAGNNILE 228
Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
L E L L ++ N ++T+P SLE L + N + +L +
Sbjct: 229 ELP--ELQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLP----ELPQS 278
Query: 287 LTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
LT L ++ N+ L +L L SN+++ L L P+L L ++ N
Sbjct: 279 LTFLDVSENIFSGLSELP----PNLYYLNASSNEIRSL----CDLPPSLEELNVSNN 327
Score = 121 bits (306), Expect = 9e-31
Identities = 60/311 (19%), Positives = 108/311 (34%), Gaps = 51/311 (16%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
I G NQL L L LT + N L +LP +L ++ N+++
Sbjct: 176 EFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKLPDLPL----SLESIVAGNNILEE 229
Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSL 167
LP + LT + N +++LP SLE L++ N LT + SL
Sbjct: 230 LPE--LQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLP----ELPQSL 279
Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
L + N + L + L +L+ +N + + L L +S N +
Sbjct: 280 TFLDVSENIFSGLS----ELPPNLYYLNASSNEIRSLCDLP----PSLEELNVSNNKLIE 331
Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTF------ 281
L + L+ L N++ +P Q+L++L + N ++E
Sbjct: 332 L----PALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLREFPDIPESVEDLR 383
Query: 282 ---------AGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLL 332
NL L + N LR + ++ L+++S ++ +
Sbjct: 384 MNSHLAEVPELPQNLKQLHVETNPLREFP----DIPESVEDLRMNSERVVDPYEFAHETT 439
Query: 333 PNLITLKLAKN 343
L +
Sbjct: 440 DKLEDDVFEHH 450
Score = 118 bits (297), Expect = 1e-29
Identities = 62/290 (21%), Positives = 113/290 (38%), Gaps = 44/290 (15%)
Query: 67 GLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN-LIKTLPSTFFKGAI-------- 117
L E ++L+E+P + + + + + + P +
Sbjct: 9 SNTFLQEPLRHSSNLTEMPVEAENVK-SKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67
Query: 118 ----RLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQ 173
+ ++L+ + SLP H LE L S N LT + SLK L +
Sbjct: 68 CLDRQAHELELNNLGLSSLPELPPH----LESLVASCNSLTELP----ELPQSLKSLLVD 119
Query: 174 SNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEF 233
+N + L + L+YL + NN+L + P L N L +++ N + L
Sbjct: 120 NNNLKAL-SDLPPLLEYLG---VSNNQLEKL-PELQN-SSFLKIIDVDNNSLKKL----P 169
Query: 234 SQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLN 293
SL+ + G N +E +P NL L ++ +N++++L +L ++
Sbjct: 170 DLPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKL----PDLPLSLESIVAG 223
Query: 294 NNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
NN+L L + + L + D+N L+ L L P+L L + N
Sbjct: 224 NNILEELPE--LQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDN 267
Score = 113 bits (284), Expect = 8e-28
Identities = 60/291 (20%), Positives = 102/291 (35%), Gaps = 49/291 (16%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
I N L L L + N L ELP + L+T+ NL+KT
Sbjct: 198 TAIYADNNSLKKL----PDLPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKT 251
Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSL 167
LP L + + N + LP SL LD+S+N+ + + +L
Sbjct: 252 LPDLPPS----LEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSGLS----ELPPNL 299
Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
L SN I L D L+ L++ NN+L + L L S N ++
Sbjct: 300 YYLNASSNEIRSLC----DLPPSLEELNVSNNKLIELPALPPR----LERLIASFNHLAE 351
Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSF---------------ANLQSLEKLFLYSNN 272
+ +LK+LH+ N + P Q+L++L + +N
Sbjct: 352 VP----ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407
Query: 273 IQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQY 323
++E ++ L +N+ + A E L+ + + +
Sbjct: 408 LREF----PDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454
Score = 73.5 bits (181), Expect = 2e-14
Identities = 28/175 (16%), Positives = 56/175 (32%), Gaps = 31/175 (17%)
Query: 43 IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ 102
+P ++ ++ N++ +L L EL + N L ELP L + S
Sbjct: 295 LPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIELPALPP----RLERLIASF 346
Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFH---------------DLISLEELD 147
N + +P L + + YN + P +L++L
Sbjct: 347 NHLAEVPELPQN----LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLH 402
Query: 148 LSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202
+ N L S++ L++ S R+ + L+ ++
Sbjct: 403 VETNPLREFP----DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 130 bits (329), Expect = 2e-33
Identities = 48/269 (17%), Positives = 105/269 (39%), Gaps = 18/269 (6%)
Query: 55 NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFK 114
+ + D + + L+K +++ ++ + + + IK++ +
Sbjct: 9 TPIKQIFPDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQ 62
Query: 115 GAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQS 174
+T + L+ N + + +L +L L L +N + + + + LK L L+
Sbjct: 63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEH 118
Query: 175 NRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFS 234
N I+ + L L+ L L NN+++ I + L L L +N IS + +
Sbjct: 119 NGISDING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI--VPLA 172
Query: 235 QLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN 294
LT L+ L+L +N+I + A A L++L+ L L+S + L + +
Sbjct: 173 GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230
Query: 295 NLLRYLDTKAFEPMLHLKKLQLDSNKLQY 323
L + + + ++ +
Sbjct: 231 GSLVTPEIISDDGDYEKPNVKWHLPEFTN 259
Score = 121 bits (305), Expect = 2e-30
Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 16/207 (7%)
Query: 139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRN 198
+ +L + +T T + + S+ ++ ++ I + L + L L
Sbjct: 19 AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 74
Query: 199 NRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA 258
N+L+ I+P K+L +L L EN I L+ L LK L L N I I
Sbjct: 75 NKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDING--LV 128
Query: 259 NLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDS 318
+L LE L+L +N I ++ + LT L L L +N + + + L+ L L
Sbjct: 129 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSK 184
Query: 319 NKLQYLATDSLSLLPNLITLKLAKNPW 345
N + L +L+ L NL L+L
Sbjct: 185 NHISDL--RALAGLKNLDVLELFSQEC 209
Score = 117 bits (295), Expect = 5e-29
Identities = 42/201 (20%), Positives = 82/201 (40%), Gaps = 16/201 (7%)
Query: 143 LEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202
+ E + I + L+ + ++L +D + N+ +
Sbjct: 1 MGETITVSTPIKQIF--PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56
Query: 203 FIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQS 262
++ Y ++T L L+ N ++ + + L +L L L +N I+ + S +L+
Sbjct: 57 SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKK 110
Query: 263 LEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQ 322
L+ L L N I +++ L L +L+L NN + D + L L L+ N++
Sbjct: 111 LKSLSLEHNGISDING--LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS 166
Query: 323 YLATDSLSLLPNLITLKLAKN 343
+ L+ L L L L+KN
Sbjct: 167 DI--VPLAGLTKLQNLYLSKN 185
Score = 113 bits (284), Expect = 2e-27
Identities = 50/266 (18%), Positives = 94/266 (35%), Gaps = 18/266 (6%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
+L ++ L + ++ + + + G N++ + L+ N +
Sbjct: 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 78
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ L + L N I+ L + DL L+ L L N ++ I +
Sbjct: 79 DIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDING--LVHLPQ 132
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
L+ L L +N+I + L LD LSL +N++S I P L L LS+N IS
Sbjct: 133 LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188
Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
L + L +L L L P +NL + ++ + +
Sbjct: 189 DL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE--IISDDGD 244
Query: 287 LTALFLNNNLLRYLDTKAFEPMLHLK 312
+ +L + + +F +
Sbjct: 245 YEKPNVKWHLPEFTNEVSFIFYQPVT 270
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 119 bits (300), Expect = 5e-32
Identities = 60/194 (30%), Positives = 84/194 (43%), Gaps = 28/194 (14%)
Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDE 232
S +P GI YLD L N L + G+F+ LT L L N + SL
Sbjct: 15 YSQGRTSVPTGIPAQTTYLD---LETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV 71
Query: 233 FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFL 292
F++LTSL L+L N ++++P G F L L++L L +N +Q L G F LT L L L
Sbjct: 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131
Query: 293 NNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-I 351
N L+ + F+ L LQ + L NPW C C I
Sbjct: 132 YQNQLKSVPDGVFD---RLTSLQ---------------------YIWLHDNPWDCTCPGI 167
Query: 352 LYMARWLRANRRKV 365
Y++ W+ + V
Sbjct: 168 RYLSEWINKHSGVV 181
Score = 110 bits (278), Expect = 7e-29
Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 3/152 (1%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
T V+ S+P + LDL N L S+ G F + SL +L L N++
Sbjct: 10 TTVECYSQGRTSVPTGIPAQT---TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS 66
Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSL 239
LP G+F+ L L +L+L N+L + G+F+ L L L+ N + SL F +LT L
Sbjct: 67 LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126
Query: 240 KELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
K+L L QN ++++P G F L SL+ ++L+ N
Sbjct: 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 102 bits (257), Expect = 8e-26
Identities = 54/162 (33%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTE 73
C C C T+ C+ Q +P IP +DL N L +L F L LT+
Sbjct: 1 CPSRCSCSGT--TVECYSQGRTSVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQ 56
Query: 74 LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP 133
L L N L LP +F +L+ ++LS N +++LP+ F +L + L+ N ++SLP
Sbjct: 57 LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116
Query: 134 ANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
VF L L++L L QN L S+ G F + SL+ + L N
Sbjct: 117 DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 117 bits (295), Expect = 2e-31
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 28/181 (15%)
Query: 216 TFLELSENWISSLNGD-EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQ 274
T L L++N + ++ D F +L L +L L +N + I +F +++L L N I+
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 275 ELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPN 334
E+ F GL L L L +N + + +FE HL L
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFE---HLNSLT------------------- 129
Query: 335 LITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL-CE 393
+L LA NP++C+C + + A WLR C P + ++D+ + C
Sbjct: 130 --SLNLASNPFNCNCHLAWFAEWLRKKSLNG--GAARCGAPSKVRDVQIKDLPHSEFKCS 185
Query: 394 G 394
Sbjct: 186 S 186
Score = 100 bits (252), Expect = 2e-25
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 168 KRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
L L N + ++ G+F L +L L L+ N+L+ I P F H+ L+L EN I
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
++ F L LK L+L N I + GSF +L SL L L SN
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 90.8 bits (226), Expect = 1e-21
Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 120 TVVQLSYNAIESLPAN-VFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
T + L+ N + + ++ +F L L +L+L +N LT I+ F G ++ L+L N+I
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
++ +F L L L+L +N++S + PG F + LT L L+ N
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 87.7 bits (218), Expect = 1e-20
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 81 LSELPGKLFISTINLSTMDLSQNLIKTLPST-FFKGAIRLTVVQLSYNAIESLPANVFHD 139
L E+P + + T L L+ N + + S F L ++L N + + N F
Sbjct: 20 LKEIPRDIPLHTTEL---LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76
Query: 140 LISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
++EL L +N + I F G++ LK L L N+I+ + PG F+ L L L+L +N
Sbjct: 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 80.4 bits (199), Expect = 6e-18
Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 29/163 (17%)
Query: 14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDA-FTGLYKLT 72
C C C T+ C + ++E+P D IP+ + L N+L +S D F L L
Sbjct: 2 CPAMCHCEGT--TVDCTGRGLKEIPRD--IPLHTTELLLNDNELGRISSDGLFGRLPHLV 57
Query: 73 ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL 132
+L+L++N L+ + F ++ + L +N ++ +
Sbjct: 58 KLELKRNQLTGIEPNAFEGASHIQELQLGEN-------------------KIK-----EI 93
Query: 133 PANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
+F L L+ L+L N ++ + G+F + SL L L SN
Sbjct: 94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 117 bits (295), Expect = 2e-31
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 27/168 (16%)
Query: 216 TFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE 275
T L L N + + E S L + L N I T+ SF+N+ L L L N ++
Sbjct: 34 TELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 276 LHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
+ TF GL +L L L+ N + + AF L L
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFN---DLSALS-------------------- 129
Query: 336 ITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSV 383
L + NP +CDC + +++ W+++ ++ C GPG + K +
Sbjct: 130 -HLAIGANPLYCDCNMQWLSDWVKSEYKEP--GIARCAGPGEMADKLL 174
Score = 93.9 bits (234), Expect = 9e-23
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
L L N+ L P + K+L + L NNR+S + F+ L L LS N +
Sbjct: 34 TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
+ F L SL+ L L N I +P G+F +L +L L + +N
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 88.1 bits (219), Expect = 1e-20
Identities = 39/120 (32%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 80 HLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHD 139
L LP + L L N +P LT++ LS N I +L F +
Sbjct: 21 GLKVLPKGIPRDVTEL---YLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSN 76
Query: 140 LISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
+ L L LS N L I TF G+ SL+ L L N I+ +P G F+DL L L++ N
Sbjct: 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 119 bits (300), Expect = 4e-31
Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 16/225 (7%)
Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
L ++ ++L S++++ + + + S+Q + ++ +L L N++
Sbjct: 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT 81
Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
+ P +LK L +L L N++ + K L L L N IS +NG L
Sbjct: 82 DIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING--LVHLPQ 135
Query: 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLR 298
L+ L+LG N I I + L L+ L L N I ++ AGLT L L+L+ N +
Sbjct: 136 LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191
Query: 299 YLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
D +A + +L L+L S + + S L T+K
Sbjct: 192 --DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234
Score = 119 bits (299), Expect = 6e-31
Identities = 49/268 (18%), Positives = 106/268 (39%), Gaps = 21/268 (7%)
Query: 54 INQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFF 113
I Q+ + + + L+K +++ ++ + + + IK++
Sbjct: 14 IKQIFSDD-----AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGI 64
Query: 114 KGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQ 173
+ +T + L+ N + + +L +L L L +N + + + + LK L L+
Sbjct: 65 QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLE 120
Query: 174 SNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEF 233
N I+ + L L+ L L NN+++ I + L L L +N IS +
Sbjct: 121 HNGISDING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--L 174
Query: 234 SQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLN 293
+ LT L+ L+L +N+I + A A L++L+ L L+S + L +
Sbjct: 175 AGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232
Query: 294 NNLLRYLDTKAFEPMLHLKKLQLDSNKL 321
+ L + + + ++ +
Sbjct: 233 DGSLVTPEIISDDGDYEKPNVKWHLPEF 260
Score = 116 bits (293), Expect = 4e-30
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 16/205 (7%)
Query: 140 LISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
+ +L + +T T + + S+ ++ ++ I + L + L L N
Sbjct: 23 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78
Query: 200 RLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFAN 259
+L+ I+P K+L +L L EN + L+ L LK L L N I I +
Sbjct: 79 KLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING--LVH 132
Query: 260 LQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSN 319
L LE L+L +N I ++ + LT L L L +N + + + L+ L L N
Sbjct: 133 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKN 188
Query: 320 KLQYLATDSLSLLPNLITLKLAKNP 344
+ L +L+ L NL L+L
Sbjct: 189 HISDL--RALAGLKNLDVLELFSQE 211
Score = 107 bits (270), Expect = 7e-27
Identities = 49/260 (18%), Positives = 93/260 (35%), Gaps = 18/260 (6%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
+L ++ L + ++ + + + G N++ + L+ N +
Sbjct: 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 81
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
+ L + L N ++ L + DL L+ L L N ++ I +
Sbjct: 82 DIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDIN--GLVHLPQ 135
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
L+ L L +N+I + L LD LSL +N++S I P L L LS+N IS
Sbjct: 136 LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191
Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
L + L +L L L P +NL + ++ + +
Sbjct: 192 DL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE--IISDDGD 247
Query: 287 LTALFLNNNLLRYLDTKAFE 306
+ +L + + +F
Sbjct: 248 YEKPNVKWHLPEFTNEVSFI 267
Score = 54.3 bits (131), Expect = 2e-08
Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 6/140 (4%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
+ + LG N+++ ++ + L KL L L N +S++ L + LS+N I
Sbjct: 136 LESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
L + G L V++L + P N +L+ + + L + + + G Y
Sbjct: 192 DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYE 249
Query: 167 LKRLKLQSNRINQLPPGIFD 186
+K IF
Sbjct: 250 KPNVKWHLPEFTNEVSFIFY 269
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 115 bits (290), Expect = 3e-30
Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 29/194 (14%)
Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDE 232
+S R +P GI + + L L +N+++ + PG+F+ +L L L N + +L
Sbjct: 27 RSKRHASVPAGIPTNAQILY---LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV 83
Query: 233 FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFL 292
F LT L L LG N + +P+ F L L++LF+ N + EL G LT+LT L L
Sbjct: 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLAL 142
Query: 293 NNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-I 351
+ N L+ + AF+ L L L NPW C+C I
Sbjct: 143 DQNQLKSIPHGAFD---RLSSLT---------------------HAYLFGNPWDCECRDI 178
Query: 352 LYMARWLRANRRKV 365
+Y+ W+ +
Sbjct: 179 MYLRNWVADHTSIA 192
Score = 105 bits (263), Expect = 2e-26
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 25/152 (16%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
++ L N I L VF LI+L+EL L N L ++ G F + L L L +N++
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSL 239
LP +FD L +L L + N+L+ + G +LT L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRG-------------------------IERLTHL 137
Query: 240 KELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
L L QN +++IP G+F L SL +L+ N
Sbjct: 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 97.5 bits (243), Expect = 1e-23
Identities = 54/186 (29%), Positives = 75/186 (40%), Gaps = 29/186 (15%)
Query: 14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTE 73
C C C T+ C + +P IP + +++ L NQ++ L F L L E
Sbjct: 13 CPSQCSCSGT--TVDCRSKRHASVPAG--IPTNAQILYLHDNQITKLEPGVFDSLINLKE 68
Query: 74 LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP 133
L L N L LP +F S L+ +DL N QL LP
Sbjct: 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTN-------------------QL-----TVLP 104
Query: 134 ANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF 193
+ VF L+ L+EL + N LT + G + L L L N++ +P G FD L L
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163
Query: 194 LSLRNN 199
L N
Sbjct: 164 AYLFGN 169
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 120 bits (304), Expect = 9e-30
Identities = 79/308 (25%), Positives = 118/308 (38%), Gaps = 21/308 (6%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFISTINLSTMDLSQNLIK 106
+ +D+ N+LS A + +L L + N +P +L + L++N
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK---SLQYLSLAENKFT 282
Query: 107 -TLPSTFFKGAIRLTVVQLSYNAIE-SLPANVFHDLISLEELDLSQNVLT-SIQYGTFSG 163
+P LT + LS N ++P LE L LS N + + T
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLK 341
Query: 164 MYSLKRLKLQSNRIN-QLPPGIFDDLKYLDFLSLRNNRLS-FIRPGLFN-YFKHLTFLEL 220
M LK L L N + +LP + + L L L +N S I P L L L L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 221 SENWISSLNGDEFSQLTSLKELHLGQNYIE-TIPAGSFANLQSLEKLFLYSNNIQELHAG 279
N + S + L LHL NY+ TIP+ S +L L L L+ N ++ G
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLE----G 456
Query: 280 T----FAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
+ L L L+ N L +L + L +N+L + L NL
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 336 ITLKLAKN 343
LKL+ N
Sbjct: 517 AILKLSNN 524
Score = 117 bits (296), Expect = 9e-29
Identities = 74/311 (23%), Positives = 115/311 (36%), Gaps = 26/311 (8%)
Query: 48 RVIDLGINQLS-TLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFIST--INLSTMDLSQN 103
+ +++ N L L L L L N +S +S L + +S N
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188
Query: 104 LIK-TLPSTFFKGAIRLTVVQLSYNAIE-SLPANVFHDLISLEELDLSQNVLTSIQYGTF 161
I + + L + +S N +P D +L+ LD+S N L+
Sbjct: 189 KISGDVDVSRCV---NLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAI 243
Query: 162 SGMYSLKRLKLQSNRIN-QLPPGIFDDLKYLDFLSLRNNRLS-FIRPGLFNYFKHLTFLE 219
S LK L + SN+ +PP L+YL L N+ + I L LT L+
Sbjct: 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLS---LAENKFTGEIPDFLSGACDTLTGLD 300
Query: 220 LSENWISSLNG---DEFSQLTSLKELHLGQNYIE-TIPAGSFANLQSLEKLFLYSNNIQ- 274
LS N G F + L+ L L N +P + ++ L+ L L N
Sbjct: 301 LSGN---HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 275 ELHAGTFAGLTNLTALFLNNNLL--RYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLL 332
EL +L L L++N L P L++L L +N +LS
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417
Query: 333 PNLITLKLAKN 343
L++L L+ N
Sbjct: 418 SELVSLHLSFN 428
Score = 95.0 bits (237), Expect = 3e-21
Identities = 61/270 (22%), Positives = 102/270 (37%), Gaps = 33/270 (12%)
Query: 90 ISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE-SLPANVFHDLISLEELDL 148
+++I+LS+ L+ + S+ L + LS + I S+ F SL LDL
Sbjct: 52 VTSIDLSSKPLNVGFS-AVSSSLLS-LTGLESLFLSNSHINGSVSG--FKCSASLTSLDL 107
Query: 149 SQNVLTSI--QYGTFSGMYSLKRLKLQSNRIN-QLPPGIFDDLKYLDFLSLRNNRLSFIR 205
S+N L+ + LK L + SN ++ L L+ L L N +S
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167
Query: 206 P---GLFNYFKHLTFLELSENWISSLNGD-EFSQLTSLKELHLGQNYIE-TIPAGSFANL 260
L + L L +S N ++GD + S+ +L+ L + N IP +
Sbjct: 168 VVGWVLSDGCGELKHLAISGN---KISGDVDVSRCVNLEFLDVSSNNFSTGIP--FLGDC 222
Query: 261 QSLEKLFLYSNNIQELHAGT----FAGLTNLTALFLNNNLLRYLDTKAF--EPMLHLKKL 314
+L+ L + N + G + T L L +++N P+ L+ L
Sbjct: 223 SALQHLDISGNKLS----GDFSRAISTCTELKLLNISSNQF----VGPIPPLPLKSLQYL 274
Query: 315 QLDSNKLQ-YLATDSLSLLPNLITLKLAKN 343
L NK + L L L+ N
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGN 304
Score = 86.1 bits (214), Expect = 3e-18
Identities = 64/285 (22%), Positives = 97/285 (34%), Gaps = 46/285 (16%)
Query: 47 IRVIDLGINQLS--------TLSK----------------DAFTGLYKLTELKLRKNHLS 82
+ + L N LS +LSK + L L L N L+
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 83 -ELPGKLFISTINLSTMDLSQNLIK-TLPSTFFKGAIRLTVVQLSYNAIE-SLPANVFHD 139
E+P L T NL+ + LS N + +P + L +++LS N+ ++PA D
Sbjct: 480 GEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAE-LGD 536
Query: 140 LISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
SL LDL+ N+ GT + K+ +N I + N
Sbjct: 537 CRSLIWLDLNTNLFN----GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 200 RLSF--IRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE-TIPAGS 256
L F IR N ++ F S+ L + N + IP
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-E 651
Query: 257 FANLQSLEKLFLYSNNIQELHAG----TFAGLTNLTALFLNNNLL 297
++ L L L N+I G L L L L++N L
Sbjct: 652 IGSMPYLFILNLGHNDIS----GSIPDEVGDLRGLNILDLSSNKL 692
Score = 75.3 bits (186), Expect = 7e-15
Identities = 52/234 (22%), Positives = 89/234 (38%), Gaps = 16/234 (6%)
Query: 48 RVIDLGINQLS-TLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFISTINLSTMDLSQNLI 105
I L N+L+ + K L L LKL N S +P +L +L +DL+ NL
Sbjct: 493 NWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLF 550
Query: 106 K-TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM 164
T+P+ FK + ++ ++ + + + I+ + +
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG---AGNLLEFQGIRSEQLNRL 607
Query: 165 YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENW 224
+ + S FD+ + FL + N LS P +L L L N
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN- 666
Query: 225 ISSLNG---DEFSQLTSLKELHLGQNYIE-TIPAGSFANLQSLEKLFLYSNNIQ 274
++G DE L L L L N ++ IP + + L L ++ L +NN+
Sbjct: 667 --DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ-AMSALTMLTEIDLSNNNLS 717
Score = 53.4 bits (129), Expect = 9e-08
Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 12/140 (8%)
Query: 214 HLTFLELSENWISSLNG---DEFSQLTSLKELHLGQNYIE-TIPAGSFANLQSLEKLFLY 269
+T ++LS ++ LT L+ L L ++I ++ F SL L L
Sbjct: 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLS 108
Query: 270 SNNIQEL--HAGTFAGLTNLTALFLNNNLLRY-LDTKAFEPMLHLKKLQLDSNKLQ---Y 323
N++ + + L L +++N L + + L+ L L +N +
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168
Query: 324 LATDSLSLLPNLITLKLAKN 343
+ L L ++ N
Sbjct: 169 VGWVLSDGCGELKHLAISGN 188
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 119 bits (299), Expect = 1e-29
Identities = 55/269 (20%), Positives = 103/269 (38%), Gaps = 31/269 (11%)
Query: 54 INQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFF 113
N+ +L K+ + + +EL+L + +LS LP L ++ ++++QN + +LP
Sbjct: 46 RNEAVSLLKECL--INQFSELQLNRLNLSSLPDNLPP---QITVLEITQNALISLPELPA 100
Query: 114 KGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQ 173
L + N + +LP SL+ LD+ N LT + L+ +
Sbjct: 101 S----LEYLDACDNRLSTLPE----LPASLKHLDVDNNQLTMLP----ELPALLEYINAD 148
Query: 174 SNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEF 233
+N++ LP + L+ LS+RNN+L+F+ + L L++S N + SL
Sbjct: 149 NNQLTMLP----ELPTSLEVLSVRNNQLTFLPELPES----LEALDVSTNLLESL-PAVP 199
Query: 234 SQLTSLKE----LHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTA 289
+ +E +N I IP + +L + L N + + + T
Sbjct: 200 VRNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258
Query: 290 LFLNNNLLRYLDTKAFEPMLHLKKLQLDS 318
D + L
Sbjct: 259 YHGPRIYFSMSDGQQNTLHRPLADAVTAW 287
Score = 105 bits (264), Expect = 7e-25
Identities = 50/306 (16%), Positives = 97/306 (31%), Gaps = 30/306 (9%)
Query: 41 QIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDL 100
+ + + L LS+L + ++T L++ +N L LP +L +D
Sbjct: 55 ECLINQFSELQLNRLNLSSLPDNLPP---QITVLEITQNALISLPELPA----SLEYLDA 107
Query: 101 SQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGT 160
N + TLP L + + N + LP LE ++ N LT +
Sbjct: 108 CDNRLSTLPELP----ASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLP--- 156
Query: 161 FSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYF---KHLTF 217
SL+ L +++N++ LP + L+ LD + N L + + F
Sbjct: 157 -ELPTSLEVLSVRNNQLTFLPELP-ESLEALD---VSTNLLESLPAVPVRNHHSEETEIF 211
Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
EN I+ + + L + L N + + S + + + I
Sbjct: 212 FRCRENRITHIP-ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD--YHGPRIYFSM 268
Query: 278 AGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLIT 337
+ + + H + + +N D LS +
Sbjct: 269 SDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAF-LDRLSDTVSARN 327
Query: 338 LKLAKN 343
+
Sbjct: 328 TSGFRE 333
Score = 102 bits (256), Expect = 7e-24
Identities = 44/246 (17%), Positives = 87/246 (35%), Gaps = 46/246 (18%)
Query: 124 LSYNAIESLPANVFHDLISLEELDLS----QNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
YN I A+ F E+ L ++ ++ + L+L ++
Sbjct: 17 SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN---QFSELQLNRLNLSS 73
Query: 180 LPPGIFDDLKYLD-----------------FLSLRNNRLSFIRPGLFNYFKHLTFLELSE 222
LP + + L+ +L +NRLS + + L L++
Sbjct: 74 LPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPAS----LKHLDVDN 129
Query: 223 NWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFA 282
N ++ L L+ ++ N + +P SLE L + +N + L
Sbjct: 130 NQLTMLP----ELPALLEYINADNNQLTMLP----ELPTSLEVLSVRNNQLTFL----PE 177
Query: 283 GLTNLTALFLNNNLLRYLDTKAFEPMLHLKK----LQLDSNKLQYLATDSLSLLPNLITL 338
+L AL ++ NLL L H ++ + N++ ++ +++ L T+
Sbjct: 178 LPESLEALDVSTNLLESLPAVPVR-NHHSEETEIFFRCRENRITHI-PENILSLDPTCTI 235
Query: 339 KLAKNP 344
L NP
Sbjct: 236 ILEDNP 241
Score = 91.2 bits (226), Expect = 4e-20
Identities = 45/213 (21%), Positives = 77/213 (36%), Gaps = 28/213 (13%)
Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFD-DLKY 190
LP N L + N ++ FS ++ L N+ + + +
Sbjct: 5 LPINNNFSLSQ----NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60
Query: 191 LDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE 250
L L LS + L +T LE+++N + SL SL+ L N +
Sbjct: 61 FSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP----ELPASLEYLDACDNRLS 113
Query: 251 TIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLH 310
T+P SL+ L + +N + L L + +NN L L
Sbjct: 114 TLP----ELPASLKHLDVDNNQLTMLP----ELPALLEYINADNNQLTMLPEL----PTS 161
Query: 311 LKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
L+ L + +N+L +L L +L L ++ N
Sbjct: 162 LEVLSVRNNQLTFLP----ELPESLEALDVSTN 190
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 115 bits (291), Expect = 2e-29
Identities = 50/282 (17%), Positives = 92/282 (32%), Gaps = 21/282 (7%)
Query: 65 FTGLYKLTELKLRKNHLSELPGKLFIST-INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQ 123
L L +T ++L + P F+ L +
Sbjct: 52 QANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMT 110
Query: 124 LSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQS-NRINQLPP 182
+ + LP + LE L L++N L ++ + + + L+ L +++ + +LP
Sbjct: 111 IDAAGLMELPDTMQQ-FAGLETLTLARNPLRALP-ASIASLNRLRELSIRACPELTELPE 168
Query: 183 GI--------FDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFS 234
+ L L L L + + P ++L L++ + +S+L
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALG-PAIH 226
Query: 235 QLTSLKELHL-GQNYIETIPAGSFANLQSLEKLFLYS-NNIQELHAGTFAGLTNLTALFL 292
L L+EL L G + P F L++L L +N+ L LT L L L
Sbjct: 227 HLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDL 284
Query: 293 -NNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLP 333
L L + + + + L P
Sbjct: 285 RGCVNLSRL-PSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325
Score = 103 bits (259), Expect = 4e-25
Identities = 62/270 (22%), Positives = 99/270 (36%), Gaps = 52/270 (19%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP---GKLFISTINLSTMDLSQNL 104
++L L D L L + + L ELP + L T+ L++N
Sbjct: 84 VALELRSVPLPQFP-DQAFRLSHLQHMTIDAAGLMELPDTMQQF----AGLETLTLARNP 138
Query: 105 IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS-QNVLTSI------- 156
++ LP++ L L EL + LT +
Sbjct: 139 LRALPASIAS-------------------------LNRLRELSIRACPELTELPEPLAST 173
Query: 157 -QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHL 215
G G+ +L+ L+L+ I LP I +L+ L L +RN+ LS + P + + L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIA-NLQNLKSLKIRNSPLSALGPAIHH-LPKL 231
Query: 216 TFLELSENWISSLNG--DEFSQLTSLKELHL-GQNYIETIPAGSFANLQSLEKLFLYSN- 271
L+L ++L F LK L L + + T+P L LEKL L
Sbjct: 232 EELDLRGC--TALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCV 288
Query: 272 NIQELHAGTFAGLTNLTALFLNNNLLRYLD 301
N+ L + A L + + +L LD
Sbjct: 289 NLSRLPS-LIAQLPANCIILVPPHLQAQLD 317
Score = 92.7 bits (231), Expect = 3e-21
Identities = 37/217 (17%), Positives = 71/217 (32%), Gaps = 20/217 (9%)
Query: 138 HDLISLEELDLS-QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSL 196
H E L L + +R + +
Sbjct: 9 HHSSGRENLYFQGSTALRPY----HDVLSQWQRHYNADRNRWHS-AWRQANSNNPQIETR 63
Query: 197 RNNRLSFIRPGLFN-YFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAG 255
L L + LEL + D+ +L+ L+ + + + +P
Sbjct: 64 TGRALKATADLLEDATQPGRVALELRSVPLPQFP-DQAFRLSHLQHMTIDAAGLMELPD- 121
Query: 256 SFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFL-NNNLLRYL--------DTKAFE 306
+ LE L L N ++ L A + A L L L + L L + +
Sbjct: 122 TMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180
Query: 307 PMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
+++L+ L+L+ ++ L S++ L NL +LK+ +
Sbjct: 181 GLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNS 216
Score = 91.9 bits (229), Expect = 5e-21
Identities = 48/230 (20%), Positives = 84/230 (36%), Gaps = 26/230 (11%)
Query: 127 NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP--PGI 184
A+ +V D ++ Q + ++++ L +
Sbjct: 23 TALRPYH-DVLSQWQRHYNADRNRWHSAWRQA-------NSNNPQIETRTGRALKATADL 74
Query: 185 FDDLKY--LDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKEL 242
+D L LR+ L F HL + + + L D Q L+ L
Sbjct: 75 LEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMELP-DTMQQFAGLETL 132
Query: 243 HLGQNYIETIPAGSFANLQSLEKLFLYSNN-IQEL--------HAGTFAGLTNLTALFLN 293
L +N + +PA S A+L L +L + + + EL +G GL NL +L L
Sbjct: 133 TLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191
Query: 294 NNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
+R L + + +LK L++ ++ L L ++ LP L L L
Sbjct: 192 WTGIRSLP-ASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGC 239
Score = 58.4 bits (142), Expect = 1e-09
Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 14/141 (9%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP---GKLFISTINLSTMDLSQ-N 103
+ + L + +L L L LK+R + LS L L L +DL
Sbjct: 186 QSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGPAIHHL----PKLEELDLRGCT 240
Query: 104 LIKTLPSTFFKGAIRLTVVQLS-YNAIESLPANVFHDLISLEELDLSQNV-LTSIQYGTF 161
++ P F L + L + + +LP + H L LE+LDL V L+ +
Sbjct: 241 ALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPS-LI 297
Query: 162 SGMYSLKRLKLQSNRINQLPP 182
+ + + + + + QL
Sbjct: 298 AQLPANCIILVPPHLQAQLDQ 318
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 106 bits (268), Expect = 8e-28
Identities = 22/162 (13%), Positives = 50/162 (30%), Gaps = 6/162 (3%)
Query: 139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRN 198
+L +L LT ++ + +L+ + +L + + L L
Sbjct: 2 ELPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIY 59
Query: 199 NRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA 258
L+ ++ + + L+ ++ L +L +L + + A +
Sbjct: 60 QELTRLKAAVGE-LPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTELKA-AVG 116
Query: 259 NLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYL 300
L KL + +L A L + + L L
Sbjct: 117 ELPEKSKLQEIYQELTQLKA-AVGELPDQSKQQQIYQELTDL 157
Score = 99.8 bits (250), Expect = 3e-25
Identities = 25/159 (15%), Positives = 46/159 (28%), Gaps = 6/159 (3%)
Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
+L+ + +L + + L L L+ + + L+ +
Sbjct: 5 EKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQEL 62
Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLT 285
+ L +L +L + + A + L KL + EL A L
Sbjct: 63 TRLK-AAVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTELKAA-VGELP 119
Query: 286 NLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYL 324
+ L L L A + K Q +L L
Sbjct: 120 EKSKLQEIYQELTQL-KAAVGELPDQSKQQQIYQELTDL 157
Score = 96.0 bits (240), Expect = 7e-24
Identities = 21/168 (12%), Positives = 51/168 (30%), Gaps = 7/168 (4%)
Query: 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL 153
S + + L + + + +Q Y + L A V L +L L
Sbjct: 5 EKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQEL 62
Query: 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK 213
T ++ + +L+ + +L + + L L L+ ++ +
Sbjct: 63 TRLK-AAVGELPEKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQELTELKAAVGE-LP 119
Query: 214 HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ 261
+ L+ ++ L +L + + + +F L
Sbjct: 120 EKSKLQEIYQELTQLK-AAVGELPDQSKQQQIYQELTDLKT-AFERLG 165
Score = 96.0 bits (240), Expect = 8e-24
Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 6/158 (3%)
Query: 187 DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQ 246
+L L L+ ++ + + L+ ++ L +L +L
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGE-LPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIY 59
Query: 247 NYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFE 306
+ + A + L KL + L A L + L L L A
Sbjct: 60 QELTRLKA-AVGELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTEL-KAAVG 116
Query: 307 PMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
+ KLQ +L L ++ LP+ +
Sbjct: 117 ELPEKSKLQEIYQELTQL-KAAVGELPDQSKQQQIYQE 153
Score = 81.7 bits (203), Expect = 1e-18
Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 11/140 (7%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP---GKLFISTINLSTMDLSQNL 104
+ +L+ L K A L + ++L+ L+ L G+L S +
Sbjct: 30 SKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTRLKAAVGEL----PEKSKLQEIYQE 84
Query: 105 IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM 164
+ L + + + +Q Y + L A V L +L LT + +
Sbjct: 85 LTRLKAAVGE-LPEKSKLQEIYQELTELKAAVGE-LPEKSKLQEIYQELTQL-KAAVGEL 141
Query: 165 YSLKRLKLQSNRINQLPPGI 184
+ + + L
Sbjct: 142 PDQSKQQQIYQELTDLKTAF 161
Score = 52.5 bits (127), Expect = 2e-08
Identities = 18/86 (20%), Positives = 25/86 (29%), Gaps = 3/86 (3%)
Query: 258 ANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLD 317
L KL + L A L + L L L A + KLQ
Sbjct: 1 GELPEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEI 58
Query: 318 SNKLQYLATDSLSLLPNLITLKLAKN 343
+L L ++ LP L+
Sbjct: 59 YQELTRL-KAAVGELPEKSKLQEIYQ 83
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 103 bits (258), Expect = 3e-26
Identities = 54/141 (38%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNL 296
+S L L N ++++P G F L L KL L N IQ L G F LT LT L+L+ N
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 297 LRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMA 355
L+ L F+ + LK+L LD+N+L+ + L +L + L NPW C C I Y++
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 147
Query: 356 RWLRANRRKVWDSKPTCRGPG 376
RWL N +K S C G G
Sbjct: 148 RWLNKNSQKEQGS-AKCSGSG 167
Score = 95.8 bits (239), Expect = 1e-23
Identities = 44/104 (42%), Positives = 65/104 (62%)
Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
RL+L+SN++ LP G+FD L L LSL N++ + G+F+ LT L L EN + S
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
L F +LT LKEL L N ++++P G F L SL+K++L++N
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 88.1 bits (219), Expect = 9e-21
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
T ++L N ++SLP VF L L +L LSQN + S+ G F + L L L N++
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN-W 224
LP G+FD L L L+L N+L + G+F+ L + L N W
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136
Score = 83.1 bits (206), Expect = 5e-19
Identities = 39/101 (38%), Positives = 54/101 (53%)
Query: 99 DLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQY 158
+L N +++LP F +LT + LS N I+SLP VF L L L L +N L S+
Sbjct: 34 ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN 93
Query: 159 GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
G F + LK L L +N++ +P GIFD L L + L N
Sbjct: 94 GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 78.8 bits (195), Expect = 1e-17
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 24/133 (18%)
Query: 43 IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ 102
IP ++L N+L +L F L +LT+L L +N + LP +F L+ + L +
Sbjct: 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85
Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFS 162
N +L SLP VF L L+EL L N L S+ G F
Sbjct: 86 N-------------------KLQ-----SLPNGVFDKLTQLKELALDTNQLKSVPDGIFD 121
Query: 163 GMYSLKRLKLQSN 175
+ SL+++ L +N
Sbjct: 122 RLTSLQKIWLHTN 134
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 105 bits (263), Expect = 1e-25
Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 26/142 (18%)
Query: 233 FSQLTSLKELHL-GQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALF 291
+L EL++ Q +++ + L L L + + ++ + F L+ L
Sbjct: 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86
Query: 292 LNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAI 351
L+ N L L K + + +L L L+ NP HC CA+
Sbjct: 87 LSFNALESLSWKTVQGL-------------------------SLQELVLSGNPLHCSCAL 121
Query: 352 LYMARWLRANRRKVWDSKPTCR 373
++ RW V + K C
Sbjct: 122 RWLQRWEEEGLGGVPEQKLQCH 143
Score = 80.9 bits (199), Expect = 4e-17
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Query: 127 NAIESLPANVFHDLISLEELDLS-QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIF 185
A++SL +L EL + Q L ++ G+ L+ L + + + + P F
Sbjct: 19 GALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76
Query: 186 DDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
L L+L N L + L L LS N
Sbjct: 77 HFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGN 113
Score = 79.4 bits (195), Expect = 1e-16
Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 4/103 (3%)
Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQLSYN-AIESLPANVFHDLISLEELDLSQNVLTSIQY 158
+ +L GA LT + + ++ L L L L + ++ L +
Sbjct: 16 TRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73
Query: 159 GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
F L RL L N + L L L L L N L
Sbjct: 74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115
Score = 74.0 bits (181), Expect = 7e-15
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 160 TFSGMYSLKRLKLQSNR-INQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFL 218
G +L L +++ + + L L L L++ + L F+ P F++ L+ L
Sbjct: 26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85
Query: 219 ELSENWISSLNGDEFSQLTSLKELHLGQN 247
LS N + SL+ L SL+EL L N
Sbjct: 86 NLSFNALESLSWKTVQGL-SLQELVLSGN 113
Score = 64.4 bits (156), Expect = 1e-11
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 63 DAFTGLYKLTELKLRKN-HLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTV 121
G LTEL + HL L + L + + ++ ++ + F RL+
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLT 154
+ LS+NA+ESL L SL+EL LS N L
Sbjct: 85 LNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 99.7 bits (249), Expect = 3e-24
Identities = 40/206 (19%), Positives = 77/206 (37%), Gaps = 18/206 (8%)
Query: 139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRN 198
L + + +L + +T + + + ++ ++ I L L L L +
Sbjct: 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72
Query: 199 NRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA 258
N++S + P L L ++ N + +LNG L L L N + S
Sbjct: 73 NQISDLSP--LKDLTKLEELSVNRNRLKNLNGIP---SACLSRLFLDNNELRDTD--SLI 125
Query: 259 NLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDS 318
+L++LE L + +N ++ + L+ L L L+ N + + LKK+
Sbjct: 126 HLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT-----GGLTRLKKVNWID 178
Query: 319 NKLQYLATDSLSLLPNLITLKLAKNP 344
Q + + P L K+P
Sbjct: 179 LTGQKCVNEPVKYQPELYITNTVKDP 204
Score = 98.9 bits (247), Expect = 6e-24
Identities = 41/222 (18%), Positives = 74/222 (33%), Gaps = 17/222 (7%)
Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYG 159
I + G L ++ L + +L ++ + + + S+
Sbjct: 4 QRPTPINQV--FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA-- 57
Query: 160 TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLE 219
+LK L L N+I+ L P DL L+ LS+ NRL + L+ L
Sbjct: 58 GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI---PSACLSRLF 112
Query: 220 LSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAG 279
L N + + L +L+ L + N +++I L LE L L+ N I
Sbjct: 113 LDNNELRDTDS--LIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGG- 167
Query: 280 TFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKL 321
L + + L K + ++ +
Sbjct: 168 -LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208
Score = 98.9 bits (247), Expect = 7e-24
Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 17/200 (8%)
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
E + + G+ + + L + L +L + + N+ + +
Sbjct: 1 ESIQRPTPINQVF--PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSL 56
Query: 205 RPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLE 264
+F +L L LS N IS L+ LT L+EL + +N ++ + A L
Sbjct: 57 AG--MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSAC---LS 109
Query: 265 KLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYL 324
+LFL +N +++ + L NL L + NN L+ + + L+ L L N++
Sbjct: 110 RLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT 165
Query: 325 ATDSLSLLPNLITLKLAKNP 344
L+ L + + L
Sbjct: 166 --GGLTRLKKVNWIDLTGQK 183
Score = 96.6 bits (241), Expect = 5e-23
Identities = 49/252 (19%), Positives = 91/252 (36%), Gaps = 19/252 (7%)
Query: 55 NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFK 114
++ + D GL + L K +++L + + + I++L +
Sbjct: 7 TPINQVFPDP--GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQ 60
Query: 115 GAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQS 174
L + LS+N I L DL LEEL +++N L ++ + L RL L +
Sbjct: 61 FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSA---CLSRLFLDN 115
Query: 175 NRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFS 234
N + LK L+ LS+RNN+L I + L L+L N I++ +
Sbjct: 116 NELRDTDS--LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT--GGLT 169
Query: 235 QLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN 294
+L + + L P L + + + + +
Sbjct: 170 RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY--YISNGGSYVDGCVLW 227
Query: 295 NLLRYLDTKAFE 306
L Y D +++
Sbjct: 228 ELPVYTDEVSYK 239
Score = 52.7 bits (127), Expect = 5e-08
Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 11/157 (7%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
+ + N+L L+ L+ L L N L + I NL + + N +K+
Sbjct: 88 EELSVNRNRLKNLNGIPSA---CLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKS 142
Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSL 167
+ +L V+ L N I + L + +DL+ + +Y
Sbjct: 143 IVM--LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198
Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
+K R + P + + +
Sbjct: 199 NTVKDPDGRW--ISPYYISNGGSYVDGCVLWELPVYT 233
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 97.7 bits (244), Expect = 3e-24
Identities = 25/180 (13%), Positives = 62/180 (34%), Gaps = 9/180 (5%)
Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
+ K + + L +++L N ++ + Y ++ L ++
Sbjct: 21 TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHA 78
Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLT 285
++ N S L++L+ L + + + + + L SL L + + + L
Sbjct: 79 TNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136
Query: 286 NLTALFLN-NNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
+ ++ L+ N + D + + LK L + + + + P L L
Sbjct: 137 KVNSIDLSYNGAIT--DIMPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQT 192
Score = 87.7 bits (218), Expect = 2e-20
Identities = 29/189 (15%), Positives = 66/189 (34%), Gaps = 14/189 (7%)
Query: 66 TGLYKLTELKLRKNHLSEL-PGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL 124
+ L ++ + + ++ +L+ + L+ + L T + A + + +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQM----NSLTYITLANINVTDL--TGIEYAHNIKDLTI 73
Query: 125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGI 184
+ + N L +LE L + +TS + SG+ SL L + + +
Sbjct: 74 NNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131
Query: 185 FDDLKYLDFLSL-RNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELH 243
+ L ++ + L N ++ I P L L + + + G L +L+
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLY 187
Query: 244 LGQNYIETI 252
I
Sbjct: 188 AFSQTIGGK 196
Score = 73.1 bits (180), Expect = 2e-15
Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 9/157 (5%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
+ I L ++ L+ + + +L + H + NL + + +
Sbjct: 46 LTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT 101
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN-VLTSIQYGTFSGMY 165
+ G LT++ +S++A + + L + +DLS N +T I +
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLP 159
Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202
LK L +Q + ++ +D L+ L + +
Sbjct: 160 ELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIG 194
Score = 64.6 bits (158), Expect = 2e-12
Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 234 SQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLN 293
S + LGQ+ I + A + SL + L + N+ +L N+ L +N
Sbjct: 20 STFKAYLNGLLGQSSTANI---TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTIN 74
Query: 294 NNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
N + + +L++L++ + +LS L +L L ++ +
Sbjct: 75 NIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122
Score = 50.7 bits (122), Expect = 1e-07
Identities = 15/111 (13%), Positives = 38/111 (34%), Gaps = 5/111 (4%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN-LIK 106
+ + +++ +GL LT L + + + + ++++DLS N I
Sbjct: 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ 157
+ K L + + ++ + D L +L + +
Sbjct: 151 DIMP--LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGKK 197
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 97.7 bits (243), Expect = 5e-23
Identities = 47/254 (18%), Positives = 75/254 (29%), Gaps = 29/254 (11%)
Query: 51 DLGINQLSTLSKDAFTGLYKLTELKLRKNHLS--ELPGKLFISTINLSTMDLSQNLIKT- 107
I G+ L EL L ++ P L + +L+ ++L T
Sbjct: 77 AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR 136
Query: 108 ---LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM 164
L L V+ ++ + +L LDLS N
Sbjct: 137 DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG--------- 187
Query: 165 YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENW 224
+ I+ L P F L+ L + S + L L L+LS N
Sbjct: 188 --------ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239
Query: 225 ISSLNGDE-FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAG 283
+ G + L L+L ++ +P G L L L N + +
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPS--PDE 294
Query: 284 LTNLTALFLNNNLL 297
L + L L N
Sbjct: 295 LPQVGNLSLKGNPF 308
Score = 90.3 bits (224), Expect = 2e-20
Identities = 41/268 (15%), Positives = 75/268 (27%), Gaps = 21/268 (7%)
Query: 68 LYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN 127
L K + + +++ L + + + + ++ G L + L
Sbjct: 48 LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR--VLGISGLQELTLENL 105
Query: 128 AI--ESLPANVFHDLISLEELDLSQNVLTSIQYGTFS----GMYSLKRLKLQSNRINQLP 181
+ + P + L L+L + LK L +
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS 165
Query: 182 PGIFDDLKYLDFLSLRNNRLS----FIRPGLFNYFKHLTFLELSENWISSLNGDE---FS 234
L L L +N I F L L L + + +G +
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225
Query: 235 QLTSLKELHLGQNYIETIP-AGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLN 293
L+ L L N + A S L L L ++++ G L+ L L+
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLS 282
Query: 294 NNLLRYLDTKAFEPMLHLKKLQLDSNKL 321
N L + + + L L N
Sbjct: 283 YNRLDRNPSPDE--LPQVGNLSLKGNPF 308
Score = 71.5 bits (175), Expect = 5e-14
Identities = 42/222 (18%), Positives = 73/222 (32%), Gaps = 20/222 (9%)
Query: 139 DLISLEELDLSQNVLTSIQYGTFS---GMYSLKRLKLQSNRI--NQLPPGIFDDLKYLDF 193
+SL+ L + + S G+ L+ L L++ + PP + L+
Sbjct: 66 KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125
Query: 194 LSLRNNRLSFIRPGLFNYF----KHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYI 249
L+LRN + L L L +++ + + ++ +L L L N
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185
Query: 250 -------ETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYL-D 301
+ F LQ L + + A L L L++N LR
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
Query: 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
+ + L L L L+ + L L L L+ N
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQV---PKGLPAKLSVLDLSYN 284
Score = 70.7 bits (173), Expect = 8e-14
Identities = 35/179 (19%), Positives = 52/179 (29%), Gaps = 23/179 (12%)
Query: 46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
++V+ + S + L+ L L N G LI
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-----------------LI 192
Query: 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI-QYGTFSGM 164
L F L + + + + + L+ LDLS N L +
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252
Query: 165 YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
L L L + Q+P G+ L LD L NRL + L L N
Sbjct: 253 SQLNSLNLSFTGLKQVPKGLPAKLSVLD---LSYNRLDRNPSPDE--LPQVGNLSLKGN 306
Score = 54.1 bits (130), Expect = 2e-08
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 51 DLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL-FISTINLSTMDLSQNLIKTLP 109
+ G+ S + +L L L N L + G L++++LS +K +P
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP 269
Query: 110 STFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ 157
+L+V+ LSYN ++ P+ +L + L L N +
Sbjct: 270 KGLPA---KLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDSE 312
Score = 51.1 bits (122), Expect = 3e-07
Identities = 41/256 (16%), Positives = 67/256 (26%), Gaps = 60/256 (23%)
Query: 127 NAIESLPANVFHDLISLEELDLSQNVLTSI-QYGTFSGMYSLKRLKLQSNRINQLPPGIF 185
N + + ++ SLE L + + Q+ SLKRL +++ RI +F
Sbjct: 29 NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPS--RILF 86
Query: 186 DDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQL--------- 236
L+ L L+ L L ++ +
Sbjct: 87 GALRVLGISGLQE-------------------LTLENLEVTGTAPPPLLEATGPDLNILN 127
Query: 237 ---------------------TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE 275
LK L + Q + +L L L N
Sbjct: 128 LRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187
Query: 276 ----LHAGTFAGLTNLTALFLNNNLLRYLDTKA---FEPMLHLKKLQLDSNKLQYL-ATD 327
+ A L L L N + + L+ L L N L+
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247
Query: 328 SLSLLPNLITLKLAKN 343
S L +L L+
Sbjct: 248 SCDWPSQLNSLNLSFT 263
Score = 38.3 bits (89), Expect = 0.003
Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 9/138 (6%)
Query: 216 TFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA---NLQSLEKLFLYSNN 272
L+ + + + SLK L + I + + L++L L +
Sbjct: 47 YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106
Query: 273 IQ--ELHAGTFAGLTNLTALFLNNNLLRYLDTKAFE----PMLHLKKLQLDSNKLQYLAT 326
+ A +L L L N D E LK L + +
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166
Query: 327 DSLSLLPNLITLKLAKNP 344
+ + + P L TL L+ NP
Sbjct: 167 EQVRVFPALSTLDLSDNP 184
Score = 29.5 bits (66), Expect = 2.1
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 44 PVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN 103
P + ++L L + K KL+ L L N L P + + + L N
Sbjct: 252 PSQLNSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLDRNPSPDELP--QVGNLSLKGN 306
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 83.3 bits (206), Expect = 1e-19
Identities = 25/83 (30%), Positives = 35/83 (42%)
Query: 310 HLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSK 369
+L L N L L L LP L T L NPW CDC ++ + WL +
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRD 91
Query: 370 PTCRGPGNLGGKSVEDMSFDDLC 392
C P L G+ + ++ D+L
Sbjct: 92 LRCVAPPALRGRLLPYLAEDELR 114
Score = 46.0 bits (109), Expect = 2e-06
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTE 73
C PC C + C ++ + PVD + L N L+ L L L
Sbjct: 2 CPAPCSCAG--TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRT 59
Query: 74 LKLRKNHL 81
L N
Sbjct: 60 AHLGANPW 67
Score = 42.9 bits (101), Expect = 2e-05
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 131 SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKY 190
SLP + EL L+ N LT++ G + +L+ L +N P L
Sbjct: 24 SLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN-----PWRCDCRLVP 75
Query: 191 L 191
L
Sbjct: 76 L 76
Score = 42.1 bits (99), Expect = 4e-05
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
L L N + LPPG+ D L L L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 39.0 bits (91), Expect = 5e-04
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
EL L N + +P G L +L L +N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 36.3 bits (84), Expect = 0.003
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQN 151
T + L+ N + +LP + L +L L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 35.6 bits (82), Expect = 0.006
Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 27/75 (36%)
Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDE 232
+ LP D L L N L+ + PGL +
Sbjct: 18 RGLTWASLPTAFPVDTTELV---LTGNNLTALPPGLLD---------------------- 52
Query: 233 FSQLTSLKELHLGQN 247
L +L+ HLG N
Sbjct: 53 --ALPALRTAHLGAN 65
Score = 31.3 bits (71), Expect = 0.22
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 71 LTELKLRKNHLSELPGKLFISTINLSTMDLSQN 103
TEL L N+L+ LP L + L T L N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 30.9 bits (70), Expect = 0.29
Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 8/67 (11%)
Query: 77 RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
R + LP + T L L+ N + LP L L N P
Sbjct: 18 RGLTWASLPTAFPVDTTEL---VLTGNNLTALPPGLLDALPALRTAHLGAN-----PWRC 69
Query: 137 FHDLISL 143
L+ L
Sbjct: 70 DCRLVPL 76
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 83.0 bits (206), Expect = 4e-19
Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 25/130 (19%)
Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNL 296
T+ + L+L N I + G F L L +L L +N + L AG F LT LT L LN+N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 297 LRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMA 355
L+ + AF+ +LK L + L NPW C C+ ILY++
Sbjct: 90 LKSIPRGAFD---NLKSLT---------------------HIWLLNNPWDCACSDILYLS 125
Query: 356 RWLRANRRKV 365
RW+ + V
Sbjct: 126 RWISQHPGLV 135
Score = 78.4 bits (194), Expect = 2e-17
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 27/130 (20%)
Query: 142 SLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
S +D S L S+ G + + + L L N+I +L PG+FD L L L L NN+L
Sbjct: 10 SGTTVDCSGKSLASVPTGIPT---TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66
Query: 202 SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ 261
+ + G+F+ +LT L +L L N +++IP G+F NL+
Sbjct: 67 TVLPAGVFD------------------------KLTQLTQLSLNDNQLKSIPRGAFDNLK 102
Query: 262 SLEKLFLYSN 271
SL ++L +N
Sbjct: 103 SLTHIWLLNN 112
Score = 70.7 bits (174), Expect = 1e-14
Identities = 31/80 (38%), Positives = 40/80 (50%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
V+ L N I L VF L L LDL N LT + G F + L +L L N++
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 180 LPPGIFDDLKYLDFLSLRNN 199
+P G FD+LK L + L NN
Sbjct: 93 IPRGAFDNLKSLTHIWLLNN 112
Score = 63.0 bits (154), Expect = 5e-12
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 72 TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
T + L+ +P + +T L L N I L F +LT + L N +
Sbjct: 12 TTVDCSGKSLASVPTGIPTTTQVL---YLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
LPA VF L L +L L+ N L SI G F + SL + L +N
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 55.7 bits (135), Expect = 2e-09
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTE 73
C C C T+ C + + +P IP +V+ L NQ++ L F L +LT
Sbjct: 3 CPSQCSCSGT--TVDCSGKSLASVPTG--IPTTTQVLYLYDNQITKLEPGVFDRLTQLTR 58
Query: 74 LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN 127
L L N L+ LP +F L+ + L+ N +K++P F LT + L N
Sbjct: 59 LDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 82.7 bits (205), Expect = 6e-19
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%)
Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNL 296
T + L L N I + G F +L +L++L+ SN + + G F LT LT L LN+N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 297 LRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMA 355
L+ + AF+ +LK L + L NPW C+C I+Y+
Sbjct: 93 LKSIPRGAFD---NLKSLT---------------------HIYLYNNPWDCECRDIMYLR 128
Query: 356 RWLRANRRKV 365
W+ + V
Sbjct: 129 NWVADHTSIV 138
Score = 70.4 bits (173), Expect = 1e-14
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
+ L+ N I L VF L++L++L + N LT+I G F + L +L L N +
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 180 LPPGIFDDLKYLDFLSLRNN 199
+P G FD+LK L + L NN
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
Score = 68.4 bits (168), Expect = 6e-14
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
T+V + S+PA + + L L+ N +T ++ G F + +L++L SN++
Sbjct: 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71
Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN-W 224
+P G+FD L L L L +N L I G F+ K LT + L N W
Sbjct: 72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPW 117
Score = 61.5 bits (150), Expect = 2e-11
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 72 TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
T + + L+ +P + L L+ N I L F + L + + N + +
Sbjct: 15 TLVNCQNIRLASVPAGIPTDKQRL---WLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71
Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
+P VF L L +LDL+ N L SI G F + SL + L +N
Sbjct: 72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 54.6 bits (132), Expect = 4e-09
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTE 73
C C C ++C + +P IP D + + L NQ++ L F L L +
Sbjct: 6 CPSQCSCDQT--LVNCQNIRLASVPAG--IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQ 61
Query: 74 LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN 127
L N L+ +P +F L+ +DL+ N +K++P F LT + L N
Sbjct: 62 LYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 84.1 bits (209), Expect = 2e-18
Identities = 51/251 (20%), Positives = 88/251 (35%), Gaps = 54/251 (21%)
Query: 63 DAFTGLYKLTELKLRKNHLSELPGKLFIST-----INLSTMDLSQ--NLIKTLPSTFFKG 115
D T Y++ L L +L I + L+ + + NL+ +P K
Sbjct: 44 DTDTQTYRVNNLDLSGLNLP---KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK- 99
Query: 116 AIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
L L L ++ ++ S + +L L N
Sbjct: 100 ------------------------LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135
Query: 176 RIN-QLPPGIFDDLKYLDFLSLRNNRLS-FIRPGLFNYFKHLTFLELSENWISSLNG--- 230
++ LPP I L L ++ NR+S I ++ K T + +S N L G
Sbjct: 136 ALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN---RLTGKIP 191
Query: 231 DEFSQLTSLKELHLGQNYIE-TIPAGSFANLQSLEKLFLYSNNIQELHAGT---FAGLTN 286
F+ L +L + L +N +E F + ++ +K+ L N++ N
Sbjct: 192 PTFANL-NLAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLA----FDLGKVGLSKN 245
Query: 287 LTALFLNNNLL 297
L L L NN +
Sbjct: 246 LNGLDLRNNRI 256
Score = 45.6 bits (109), Expect = 1e-05
Identities = 31/126 (24%), Positives = 46/126 (36%), Gaps = 23/126 (18%)
Query: 231 DEFSQLTSLKELHLGQNYIE---TIPAGSFANLQSLEKLFLYSNN-----IQELHAGTFA 282
D +Q + L L + IP+ S ANL L L++ N I A
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPP----AIA 98
Query: 283 GLTNLTALFLNNNLL-----RYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLIT 337
LT L L++ + + +L + L L N L S+S LPNL+
Sbjct: 99 KLTQLHYLYITHTNVSGAIPDFLSQ-----IKTLVTLDFSYNALSGTLPPSISSLPNLVG 153
Query: 338 LKLAKN 343
+ N
Sbjct: 154 ITFDGN 159
Score = 34.8 bits (81), Expect = 0.041
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 15/118 (12%)
Query: 43 IPVDI-----RVIDLGINQLS-TLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFISTINL 95
IP +DL N L S F ++ L KN L+ +L + NL
Sbjct: 190 IPPTFANLNLAFVDLSRNMLEGDAS-VLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNL 246
Query: 96 STMDLSQNLIK-TLPSTFFKGAIRLTVVQLSYNAIE-SLPANVFHDLISLEELDLSQN 151
+ +DL N I TLP + L + +S+N + +P +L + + N
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANN 301
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 80.5 bits (199), Expect = 4e-18
Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
Query: 170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229
+KL + I Q + + L LR ++ I L ++ S+N I L+
Sbjct: 2 VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD 58
Query: 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL-HAGTFAGLTNLT 288
G F L LK L + N I I G L L +L L +N++ EL A L +LT
Sbjct: 59 G--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116
Query: 289 ALFLNNN 295
L + N
Sbjct: 117 YLCILRN 123
Score = 72.4 bits (178), Expect = 3e-15
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 6/134 (4%)
Query: 121 VVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQL 180
+V+L+ IE + + + ELDL + I+ + + + N I +L
Sbjct: 1 MVKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL 57
Query: 181 PPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNG-DEFSQLTSL 239
F L+ L L + NNR+ I GL LT L L+ N + L D + L SL
Sbjct: 58 DG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115
Query: 240 KELHLGQNYIETIP 253
L + +N +
Sbjct: 116 TYLCILRNPVTNKK 129
Score = 70.1 bits (172), Expect = 2e-14
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
++L+ I +++ +EL L I I A L + + N I++L
Sbjct: 2 VKLTAELIEQA--AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL- 57
Query: 278 AGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT-DSLSLLPNLI 336
F L L L +NNN + + + + L +L L +N L L D L+ L +L
Sbjct: 58 -DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116
Query: 337 TLKLAKNP 344
L + +NP
Sbjct: 117 YLCILRNP 124
Score = 67.0 bits (164), Expect = 2e-13
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
Query: 98 MDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ 157
+ L+ LI+ + A+R + L I + N+ L + +D S N + +
Sbjct: 2 VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLD 58
Query: 158 YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR--PGLFNYFKHL 215
F + LK L + +NRI ++ G+ L L L L NN L + L + K L
Sbjct: 59 --GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS-LKSL 115
Query: 216 TFLELSEN 223
T+L + N
Sbjct: 116 TYLCILRN 123
Score = 57.4 bits (139), Expect = 5e-10
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
Query: 65 FTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL 124
+T + EL LR + + L + +D S N I+ L F RL + +
Sbjct: 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLV 71
Query: 125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQSNRINQLP 181
+ N I + + L L EL L+ N L + + + SL L + N +
Sbjct: 72 NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129
Score = 43.1 bits (102), Expect = 3e-05
Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 6/105 (5%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
ID N++ L F L +L L + N + + L + +L+ + L+ N +
Sbjct: 44 FDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101
Query: 107 TLPS-TFFKGAIRLTVVQLSYNAIESLP---ANVFHDLISLEELD 147
L LT + + N + + V + + + LD
Sbjct: 102 ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 82.9 bits (204), Expect = 3e-17
Identities = 54/342 (15%), Positives = 101/342 (29%), Gaps = 14/342 (4%)
Query: 1 WIKSDKEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTL 60
W+ E CC R + + ++ VD + +
Sbjct: 234 WLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGR 293
Query: 61 SKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLT 120
++ + L L L ++ + + L ++ + +L
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDS-ATDEQLF 352
Query: 121 VVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQL 180
+LS L + L+EL+ M +L L + +
Sbjct: 353 RCELSVEKSTVLQ-SELESCKELQELEPENKWCLLTII---LLMRALDPLLYEKETLQYF 408
Query: 181 PPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLK 240
D +L ++ L + + L L+ ++ L QL +
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVT 466
Query: 241 ELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYL 300
L L N + +P A L+ LE L N ++ + A L L L L NN L+
Sbjct: 467 HLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQS 523
Query: 301 DT-KAFEPMLHLKKLQLDSNKLQYLA---TDSLSLLPNLITL 338
+ L L L N L +LP++ ++
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 81.5 bits (202), Expect = 6e-17
Identities = 64/352 (18%), Positives = 121/352 (34%), Gaps = 58/352 (16%)
Query: 46 DIRVIDLGINQLSTLS-KDAFTGLYKLTELKLRKNHLSELP----GKLFISTINLSTMDL 100
DI+ +D+ +LS + L + ++L L+E L+ ++L
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63
Query: 101 SQNLI-----KTLPSTFFKGAIRLTVVQLSYNAI-----ESLPANVFHDLISLEELDLSQ 150
N + + + ++ + L + L ++ L +L+EL LS
Sbjct: 64 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL-SSTLRTLPTLQELHLSD 122
Query: 151 NVLT-----SIQYGTFSGMYSLKRLKLQSNRINQLPPGI------FDDLKYLDFLSLRNN 199
N+L + G L++L+L+ ++ L++ NN
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS--AASCEPLASVLRAKPDFKELTVSNN 180
Query: 200 RLS-----FIRPGLFNYFKHLTFLELSENWISSLN----GDEFSQLTSLKELHLGQNYI- 249
++ + GL + L L+L ++S N + SL+EL LG N +
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240
Query: 250 ----ETIPAGSFANLQSLEKLFLYSNNIQELHAGTFA----GLTNLTALFLNNNLL---- 297
+ G L L+++ I G +L L L N L
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300
Query: 298 -RYLDTKAFEPMLHLKKLQLDSNKL-----QYLATDSLSLLPNLITLKLAKN 343
R L EP L+ L + S + + L+ L+ L+++ N
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS-SVLAQNRFLLELQISNN 351
Score = 69.6 bits (171), Expect = 4e-13
Identities = 63/350 (18%), Positives = 105/350 (30%), Gaps = 62/350 (17%)
Query: 47 IRVIDLGINQLS-----TLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTI----NLST 97
++ + L N L L + +L +L+L LS + S + +
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174
Query: 98 MDLSQNLI-----KTLPSTFFKGAIRLTVVQLSYNAI-----ESLPANVFHDLISLEELD 147
+ +S N I + L +L ++L + L + SL EL
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL-CGIVASKASLRELA 233
Query: 148 LSQNVLT-----SIQYGTFSGMYSLKRLKLQSNRINQLPPG---IFDDLKY---LDFLSL 196
L N L + G L+ L + I G + L+ L LSL
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT--AKGCGDLCRVLRAKESLKELSL 291
Query: 197 RNNRLS-----FIRPGLFNYFKHLTFLELSENWISSLNGDEFSQL----TSLKELHLGQN 247
N L + L L L + ++ FS + L EL + N
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351
Query: 248 YIETIPAGSFA-----NLQSLEKLFLYSNNIQELHAGTFA----GLTNLTALFLNNNLLR 298
+E L L+L ++ + + A +L L L+NN L
Sbjct: 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411
Query: 299 YLDTKAF-----EPMLHLKKLQLDSNKL-----QYLATDSLSLLPNLITL 338
+P L++L L L P+L +
Sbjct: 412 DAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA-LEKDKPSLRVI 460
Score = 68.5 bits (168), Expect = 8e-13
Identities = 67/363 (18%), Positives = 113/363 (31%), Gaps = 64/363 (17%)
Query: 47 IRVIDLGINQLSTLS----KDAFTGLYKLTELKLRKNHLSELPGKLFISTI-----NLST 97
I+ + L L+ L L EL L N L + +L + L
Sbjct: 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146
Query: 98 MDLSQNLIKTLPSTFFKGAIR----LTVVQLSYNAI-----ESLPANVFHDLISLEELDL 148
+ L + +R + +S N I L + LE L L
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206
Query: 149 SQNVLTSIQYGTFSGM----YSLKRLKLQSNRI-----NQLPPGIFDDLKYLDFLSLRNN 199
+TS G+ SL+ L L SN++ +L PG+ L L +
Sbjct: 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266
Query: 200 RLS-----FIRPGLFNYFKHLTFLELSENWISSLNGDE---------FSQLTSLKELHLG 245
++ + L + L L L+ N + GDE L+ L +
Sbjct: 267 GITAKGCGDLCRVLRA-KESLKELSLAGNEL----GDEGARLLCETLLEPGCQLESLWVK 321
Query: 246 QNYIETIPAGSFANL----QSLEKLFLYSNNI-----QELHAGTFAGLTNLTALFLNNNL 296
F+++ + L +L + +N + +EL G + L L+L +
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381
Query: 297 LRYLDTKAFEPML----HLKKLQLDSNKLQYLATDSLSLL-----PNLITLKLAKNPWHC 347
+ + L L++L L +N L L L L L W
Sbjct: 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441
Query: 348 DCA 350
+
Sbjct: 442 EME 444
Score = 64.2 bits (157), Expect = 2e-11
Identities = 56/302 (18%), Positives = 98/302 (32%), Gaps = 61/302 (20%)
Query: 94 NLSTMDLSQN---------LIKTLPSTFFKGAIRLTVVQLSYNAI-----ESLPANVFHD 139
++ ++D+ L+ L + VV+L + + + ++
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQ--------QCQVVRLDDCGLTEARCKDI-SSALRV 54
Query: 140 LISLEELDLSQNVLT-----SIQYGTFSGMYSLKRLKLQSNRIN----QLPPGIFDDLKY 190
+L EL+L N L + G + +++L LQ+ + + L
Sbjct: 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT 114
Query: 191 LDFLSLRNNRLS-----FIRPGLFNYFKHLTFLELSENWISSLN----GDEFSQLTSLKE 241
L L L +N L + GL + L L+L +S+ + KE
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174
Query: 242 LHLGQNYI-----ETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGL----TNLTALFL 292
L + N I + G + LE L L S + + G+ +L L L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234
Query: 293 NNNLL-----RYLDTKAFEPMLHLKKLQLDSNKL-----QYLATDSLSLLPNLITLKLAK 342
+N L L P L+ L + + L L +L L LA
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR-VLRAKESLKELSLAG 293
Query: 343 NP 344
N
Sbjct: 294 NE 295
Score = 44.6 bits (106), Expect = 4e-05
Identities = 31/174 (17%), Positives = 49/174 (28%), Gaps = 28/174 (16%)
Query: 213 KHLTFLELSENWISSLNGDE-----FSQLTSLKELHLGQNYIETIPAGSFA----NLQSL 263
+ L++ + D L + + L + + +L
Sbjct: 3 LDIQSLDIQCEEL----SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 58
Query: 264 EKLFLYSNNIQELHAGTFA-GL----TNLTALFLNNNLLRYLDTKAFEPML----HLKKL 314
+L L SN + ++ GL + L L N L L L++L
Sbjct: 59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118
Query: 315 QLDSNKL-----QYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRR 363
L N L Q L L L L+L +A LRA
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE-PLASVLRAKPD 171
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 70.1 bits (172), Expect = 3e-14
Identities = 44/207 (21%), Positives = 68/207 (32%), Gaps = 33/207 (15%)
Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQL--SYNAIESLPANVFHDLISLEELDLSQNVLTSIQ 157
++ I+ A V+L IE + A + L + + L LS N + I
Sbjct: 6 TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLST-LKACKHLALSTNNIEKIS 64
Query: 158 YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTF 217
++ L LSL N + I L L
Sbjct: 65 S--------------------------LSGMENLRILSLGRNLIKKI-ENLDAVADTLEE 97
Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA-GSFANLQSLEKLFLYSNNIQEL 276
L +S N I+SL+G +L +L+ L++ N I A L LE L L N +
Sbjct: 98 LWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155
Query: 277 HAGTFAGLTNLTALFLNNNLLRYLDTK 303
+ A + L+ LD
Sbjct: 156 YKENNATSEYRIEVVKRLPNLKKLDGM 182
Score = 63.9 bits (156), Expect = 4e-12
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
L I ++ S L + K L L N IE I S + +++L L L N I+++
Sbjct: 30 LHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE 86
Query: 278 AGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT-DSLSLLPNLI 336
A L L+++ N + L E +++L+ L + +NK+ D L+ L L
Sbjct: 87 -NLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143
Query: 337 TLKLAKNP 344
L LA NP
Sbjct: 144 DLLLAGNP 151
Score = 52.4 bits (126), Expect = 3e-08
Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 7/171 (4%)
Query: 35 EELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTIN 94
EE + + I + + + L L L N++ ++ N
Sbjct: 15 EERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKISS--LSGMEN 71
Query: 95 LSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLT 154
L + L +NLIK + A L + +SYN I SL L++L L +S N +T
Sbjct: 72 LRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKIT 128
Query: 155 SIQ-YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
+ + + L+ L L N + +Y + R L +
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 67.8 bits (166), Expect = 8e-14
Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 5/131 (3%)
Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
+ ++ +L ++ L + ++N GL F +L FL L +
Sbjct: 4 GSSGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIE--GLTAEFVNLEFLSLINVGL 61
Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL-HAGTFAGL 284
S++ +L LK+L L +N I L +L L L N ++++ L
Sbjct: 62 ISVSN--LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL 119
Query: 285 TNLTALFLNNN 295
L +L L N
Sbjct: 120 ECLKSLDLFNC 130
Score = 65.1 bits (159), Expect = 9e-13
Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 5/128 (3%)
Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
+++ L + + L L ++ I G A +LE L L + + +
Sbjct: 8 MDMKRRIHLELRNRTPAAVREL-VLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV- 64
Query: 278 AGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT-DSLSLLPNLI 336
L L L L+ N + E + +L L L NKL+ ++T + L L L
Sbjct: 65 -SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123
Query: 337 TLKLAKNP 344
+L L
Sbjct: 124 SLDLFNCE 131
Score = 53.2 bits (128), Expect = 1e-08
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 8/151 (5%)
Query: 96 STMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTS 155
S MD+ + + L + A+R V+ + + + + ++LE L L L S
Sbjct: 6 SGMDMKRRIHLELRNRTPA-AVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLIS 63
Query: 156 IQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRP-GLFNYFKH 214
+ + LK+L+L NRI + + L L L+L N+L I +
Sbjct: 64 VS--NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC 121
Query: 215 LTFLELSENWISSLNG---DEFSQLTSLKEL 242
L L+L +++LN F L L L
Sbjct: 122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152
Score = 42.0 bits (99), Expect = 7e-05
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL 104
V++ + L L ++ L KL +L+L +N + L NL+ ++LS N
Sbjct: 49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106
Query: 105 IKTLPS-TFFKGAIRLTVVQLSYNAIESLP---ANVFHDLISLEELD 147
+K + + K L + L + +L +VF L L LD
Sbjct: 107 LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 69.0 bits (169), Expect = 4e-13
Identities = 38/254 (14%), Positives = 77/254 (30%), Gaps = 28/254 (11%)
Query: 57 LSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGA 116
S + G L ++ L + + + F NL + + L +
Sbjct: 89 FSNVVNGVTKGKQTLEKVILSEK-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADS 147
Query: 117 IRLTVVQLS----YNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKL 172
+ + L Y F + LE + ++ + +
Sbjct: 148 VTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM-GKLEDEIMKAGLQPRDINF 206
Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDE 232
I L DF + +Y +L L++S+ +++
Sbjct: 207 ---------LTIEGKLDNADFKLI------------RDYMPNLVSLDISKTNATTIPDFT 245
Query: 233 FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFL 292
F+Q L ++ L N ++TI F+N L ++ + G F G NL +
Sbjct: 246 FAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLA 304
Query: 293 NNNLLRYLDTKAFE 306
+ + L + F
Sbjct: 305 TGDKITTLGDELFG 318
Score = 60.2 bits (146), Expect = 3e-10
Identities = 36/225 (16%), Positives = 77/225 (34%), Gaps = 16/225 (7%)
Query: 94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLS----YNAIESLPANVFHDLISLEELDLS 149
+L +D+S IK + ++ A ++ V +LE++ LS
Sbjct: 50 SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILS 109
Query: 150 QNVLTSIQYGTFSGMYSLKRLKL-QSNRINQLPPGIFDDLKYLDF---LSLRNNRLSFIR 205
+ + +I+ F G +LK ++ + N LP + D + + S +
Sbjct: 110 EKI-KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE 168
Query: 206 PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ---- 261
F + L + L + ++++ + F ++
Sbjct: 169 HFAFIEGEPLETTIQVGA-MGKLEDEIMKAGLQPRDINFL-TIEGKLDNADFKLIRDYMP 226
Query: 262 SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFE 306
+L L + N + TFA L + L +N L+ + + F
Sbjct: 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS 270
Score = 44.0 bits (104), Expect = 4e-05
Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 33/184 (17%)
Query: 89 FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLI----SLE 144
FI L T + L K ++ + L F + +L
Sbjct: 172 FIEGEPLETTIQVGA-MGKLEDEIMKAGLQPRDINFL-TIEGKLDNADFKLIRDYMPNLV 229
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
LD+S+ T+I TF+ L ++KL N L I
Sbjct: 230 SLDISKTNATTIPDFTFAQKKYLLKIKLPHN-------------------------LKTI 264
Query: 205 RPGLFNYFKHLT-FLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSL 263
+F+ L LEL + ++++ F +L+ + + I T+ F N
Sbjct: 265 GQRVFSNCGRLAGTLELPAS-VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323
Query: 264 EKLF 267
+ ++
Sbjct: 324 KLIY 327
Score = 33.2 bits (76), Expect = 0.14
Identities = 17/119 (14%), Positives = 40/119 (33%), Gaps = 25/119 (21%)
Query: 50 IDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLP 109
+D+ +T+ F L ++KL N L + ++F + L + LP
Sbjct: 231 LDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL------AGTL-ELP 282
Query: 110 STFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK 168
++ + ++ F +L + + + +T++ F K
Sbjct: 283 AS-----------------VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 65.1 bits (159), Expect = 6e-13
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 194 LSLRNNRLSFIR-PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
L L N+R + + GL + F+ L FL ++S+ +L LK+L L N +
Sbjct: 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSGG 79
Query: 253 PAGSFANLQSLEKLFLYSNNIQEL-HAGTFAGLTNLTALFLNNN 295
+L L L N I++L L NL +L L N
Sbjct: 80 LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Score = 57.8 bits (140), Expect = 2e-10
Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 7/130 (5%)
Query: 142 SLEELDLSQNVLTSIQY-GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR 200
++EL L + + G L+ L + + + L L L L +NR
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNR 75
Query: 201 LSFIRPGLFNYFKHLTFLELSENWISSLNG-DEFSQLTSLKELHLGQNYIETIP---AGS 256
+S L +LT L LS N I L+ + +L +LK L L + +
Sbjct: 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV 135
Query: 257 FANLQSLEKL 266
F L L L
Sbjct: 136 FKLLPQLTYL 145
Score = 57.8 bits (140), Expect = 2e-10
Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 5/118 (4%)
Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNL 287
L S + L + N + G + LE L + + + L L
Sbjct: 11 LRNRTPSDVKELVLDNSRSNEGKLE--GLTDEFEELEFLSTINVGLTSI--ANLPKLNKL 66
Query: 288 TALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT-DSLSLLPNLITLKLAKNP 344
L L++N + E +L L L NK++ L+T + L L NL +L L
Sbjct: 67 KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124
Score = 50.4 bits (121), Expect = 8e-08
Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 7/132 (5%)
Query: 212 FKHLTFLELSENWISSLNGDE-FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYS 270
+ L L + + + + L+ L + +I + L L+KL L
Sbjct: 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSD 73
Query: 271 NNIQELHAGTFAGLTNLTALFLNNNLLRYLDT-KAFEPMLHLKKLQLDSN---KLQYLAT 326
N + NLT L L+ N ++ L T + + + +LK L L + L
Sbjct: 74 NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRE 133
Query: 327 DSLSLLPNLITL 338
+ LLP L L
Sbjct: 134 NVFKLLPQLTYL 145
Score = 47.7 bits (114), Expect = 6e-07
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
L + + S+ L L++L+LS N ++ +L L L N+I
Sbjct: 44 LEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101
Query: 179 QLP-PGIFDDLKYLDFLSLRNN---RLSFIRPGLFNYFKHLTFL 218
L L+ L L L N L+ R +F LT+L
Sbjct: 102 DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145
Score = 40.8 bits (96), Expect = 1e-04
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL 104
++ + L++++ L KL +L+L N +S L NL+ ++LS N
Sbjct: 42 EELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99
Query: 105 IKTLPS-TFFKGAIRLTVVQLSYNAIESLP---ANVFHDLISLEELD 147
IK L + K L + L + +L NVF L L LD
Sbjct: 100 IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 65.5 bits (160), Expect = 6e-12
Identities = 50/329 (15%), Positives = 112/329 (34%), Gaps = 61/329 (18%)
Query: 70 KLTELKLRKNHLSELPGKLFISTI-----NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL 124
+T L L N+L + I ++++++LS N + K + L
Sbjct: 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF------KNSDELV---- 72
Query: 125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM-----YSLKRLKLQSNRI-- 177
+ ++PA ++ L+LS N L+ +++ L L N
Sbjct: 73 --QILAAIPA-------NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123
Query: 178 ---NQLPPGIFDDLKYLDFLSLRNNRLS-----FIRPGLFNYFKHLTFLELSENWISSLN 229
++ + + L+LR N L + L ++ L L N ++S N
Sbjct: 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183
Query: 230 GDEFSQL-----TSLKELHLGQNYIETIPAGSFA-----NLQSLEKLFLYSNNIQELHAG 279
E ++ S+ L L N + A + L L N +
Sbjct: 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243
Query: 280 TFAGL----TNLTALFLNNNLLRYLDTK-------AFEPMLHLKKLQLDSNKLQYLATDS 328
L +L ++L+ ++++ + + AF + + + + ++ +
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303
Query: 329 LSLLPNLITLKLAKNPWHCDCAILYMARW 357
+S L ++ K P + +++ +
Sbjct: 304 ISNLIRELSGKA-DVPSLLNQCLIFAQKH 331
Score = 62.8 bits (153), Expect = 4e-11
Identities = 46/304 (15%), Positives = 93/304 (30%), Gaps = 51/304 (16%)
Query: 70 KLTELKLRKNHLSELPGKLFISTI-----NLSTMDLSQNLI-----KTLPSTFFKGAIRL 119
+T L L N L + + N+++++LS N + L T +
Sbjct: 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111
Query: 120 TVVQLSYNAI-----ESLPANVFHDLISLEELDLSQNVLT-----SIQYGTFSGMYSLKR 169
TV+ L +N + S+ L+L N L + + ++
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171
Query: 170 LKLQSNRIN-----QLPPGIFDDLKYLDFLSLRNNRL-----SFIRPGLFNYFKHLTFLE 219
L L+ N + +L + + L L N L + + + H+ L
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231
Query: 220 LSENWISSLNGDEFSQL----TSLKELHLGQNYIETIP-------AGSFANLQSLEKLFL 268
L N + + + L L+ ++L + ++ + +F N+Q + +
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291
Query: 269 YSNNIQELHAGTFAGL-----TNLTALFLNNNLLRYLDTKAFEPML-----HLKKLQLDS 318
I H+ + L L N L + L++
Sbjct: 292 NGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTC 351
Query: 319 NKLQ 322
L
Sbjct: 352 KPLL 355
Score = 44.7 bits (106), Expect = 3e-05
Identities = 31/157 (19%), Positives = 52/157 (33%), Gaps = 27/157 (17%)
Query: 213 KHLTFLELSENWISSLNGDEFSQL-----TSLKELHLGQNYIETIPAGSFA-----NLQS 262
+T L+LS N + S++ E Q S+ L+L N + + +
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81
Query: 263 LEKLFLYSNNIQELHAGTFAGL-----TNLTALFLNNNLLRYLDTKAFEPML-----HLK 312
+ L L N + + +T L L N + F+ +
Sbjct: 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141
Query: 313 KLQLDSNKL-----QYLATDSLSLLP-NLITLKLAKN 343
L L N L L L+ +P N+ +L L N
Sbjct: 142 SLNLRGNDLGIKSSDELI-QILAAIPANVNSLNLRGN 177
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 64.0 bits (156), Expect = 2e-11
Identities = 52/319 (16%), Positives = 88/319 (27%), Gaps = 75/319 (23%)
Query: 71 LTELKLRKNHLSELPGKLFISTI----NLSTMDLSQNLIKTLPSTFFKGAI--------- 117
+ E+ L N + + I +L + S + +
Sbjct: 34 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93
Query: 118 -RLTVVQLSYNAIESLPANVFHDLI----SLEELDLSQNVLT-------------SIQYG 159
+L V+LS NA D + LE L L N L
Sbjct: 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153
Query: 160 TFSGMYSLKRLKLQSNRINQLPPGI------FDDLKYLDFLSLRNNRL------SFIRPG 207
L+ + NR+ + F + L + + N + + G
Sbjct: 154 KAKNAPPLRSIICGRNRLE--NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211
Query: 208 LFNYFKHLTFLELSENWISSLNGDE--------FSQLTSLKELHLGQNYIETIPAGSFAN 259
L Y + L L+L +N +L+EL L + A + +
Sbjct: 212 L-AYCQELKVLDLQDNTF----THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266
Query: 260 L------QSLEKLFLYSNNIQELHAGTFA-----GLTNLTALFLNNNLLRYLD------T 302
L+ L L N I+ T + +L L LN N D
Sbjct: 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIR 326
Query: 303 KAFEPMLHLKKLQLDSNKL 321
+ F + +LD +
Sbjct: 327 EVFSTRGRGELDELDDMEE 345
Score = 62.4 bits (152), Expect = 7e-11
Identities = 53/301 (17%), Positives = 97/301 (32%), Gaps = 61/301 (20%)
Query: 119 LTVVQLSYNAI-----ESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM----YSLKR 169
+ L +AI +S+ V + S++E+ LS N + + S L+
Sbjct: 6 IEGKSLKLDAITTEDEKSV-FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64
Query: 170 LKLQSNRINQLPPGIFDDLKY----------LDFLSLRNNRL-----SFIRPGLFNYFKH 214
+ ++ I + L+ L + L +N + L +
Sbjct: 65 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH-TP 123
Query: 215 LTFLELSENWIS-------------SLNGDEFSQLTSLKELHLGQNYIETIPAGSFA--- 258
L L L N + + L+ + G+N +E +A
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183
Query: 259 -NLQSLEKLFLYSNNI-----QELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPML--- 309
+ + L + + N I + L A L L L +N +L + A L
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243
Query: 310 -HLKKLQLDSNKL-----QYLATDSLSLLPN--LITLKLAKNPWHCDCAILYMARWLRAN 361
+L++L L+ L + D+ S L N L TL+L N D + +
Sbjct: 244 PNLRELGLNDCLLSARGAAAVV-DAFSKLENIGLQTLRLQYNEIELDAVRT-LKTVIDEK 301
Query: 362 R 362
Sbjct: 302 M 302
Score = 61.3 bits (149), Expect = 1e-10
Identities = 45/253 (17%), Positives = 72/253 (28%), Gaps = 54/253 (21%)
Query: 142 SLEELDLSQNVLTS--IQY--GTFSGMYSLKRLKLQSNRINQLPPGIF---------DDL 188
S+E L + +T+ + S+K + L N I DL
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIG--TEAARWLSENIASKKDL 62
Query: 189 KYLDFLSLRNNRLSFIRPGLFNYF-------KHLTFLELSENWISSLNGDEFSQL----T 237
+ +F + R+ P L + LS+N + T
Sbjct: 63 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122
Query: 238 SLKELHLGQNYI-------------ETIPAGSFANLQSLEKLFLYSNNIQELHAGTFA-- 282
L+ L+L N + E N L + N ++ +A
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182
Query: 283 --GLTNLTALFLNNNLLR-----YLDTKAFEPMLHLKKLQLDSNKL-----QYLATDSLS 330
L + + N +R +L + LK L L N LA +L
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALK 241
Query: 331 LLPNLITLKLAKN 343
PNL L L
Sbjct: 242 SWPNLRELGLNDC 254
Score = 48.2 bits (115), Expect = 3e-06
Identities = 39/241 (16%), Positives = 70/241 (29%), Gaps = 53/241 (21%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYK----LTELKLRKNHLSELPGKLFISTI--------- 93
+ + L N +++ L L L N L G +
Sbjct: 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 155
Query: 94 ----NLSTMDLSQNLI-----KTLPSTFFKGAIRLTVVQLSYNAI-----ESLPANVFHD 139
L ++ +N + K + F+ L V++ N I E L
Sbjct: 156 KNAPPLRSIICGRNRLENGSMKEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214
Query: 140 LISLEELDLSQNVLTS--IQY--GTFSGMYSLKRLKLQSNRI---------NQLPPGIFD 186
L+ LDL N T +L+ L L + +
Sbjct: 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274
Query: 187 DLKYLDFLSLRNNRLS-----FIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE 241
L+ L L+ N + ++ + L FLEL+ N +E + ++E
Sbjct: 275 GLQTLR---LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF----SEEDDVVDEIRE 327
Query: 242 L 242
+
Sbjct: 328 V 328
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 3e-08
Identities = 77/414 (18%), Positives = 126/414 (30%), Gaps = 146/414 (35%)
Query: 30 WKQDMEELPFDQI---IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG 86
W ++ P IP+ +I G+ QL+ Y +T + + PG
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLI--GVIQLAH---------YVVT---AKLLGFT--PG 261
Query: 87 KLFISTINLSTM-----------------DLSQNLIKTLPSTFFKGAIRLTVVQLSYNAI 129
+L + ++ K + FF G R +Y
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV-R---CYEAYPNT 317
Query: 130 ESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS---LKRLKLQS--NRINQ-LPPG 183
SLP ++ D + E G S M S L + ++Q N+ N LP G
Sbjct: 318 -SLPPSILEDSLENNE-------------GVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 184 IFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLK-EL 242
K + +SL N + + G SL G L K
Sbjct: 364 -----KQV-EISLVNGAKNLVVSGP----------------PQSLYGLN-LTLRKAKAPS 400
Query: 243 HLGQNYIETIPAGSFANLQSLEKL-----FLYSNNIQELHAGTFAGLTNLTALFLNNNLL 297
L Q+ IP F S KL FL + + F +++LL
Sbjct: 401 GLDQS---RIP---F----SERKLKFSNRFL-----------------PVASPF-HSHLL 432
Query: 298 RYLDTKAFEPM---LHLKKLQLDSNKLQ---YLATDS--LSLLPNLITLKLAKNPWHCDC 349
A + + L + ++ +Q Y D L +L I+ ++ DC
Sbjct: 433 ----VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI------VDC 482
Query: 350 AILYMARWLRANRRKVWDSKPT---CRGPGNLGGKSVEDMSFDDLCEGQWASMV 400
I +W K T GPG G + ++ +G ++
Sbjct: 483 IIRLPVKWETTT-----QFKATHILDFGPGGASG--LGVLT-HRNKDGTGVRVI 528
Score = 45.8 bits (108), Expect = 2e-05
Identities = 41/232 (17%), Positives = 67/232 (28%), Gaps = 75/232 (32%)
Query: 191 LDFLSLR-------NNRLSFIRP-GLFNYFKHLTFLELSENWISSLNG--DEFSQ---LT 237
+D S R + + P +L E + L + F+ T
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTAS-----FFIASQLQEQFNKILPEPTEGFAADDEPT 55
Query: 238 SLKELH---LG--QNYIETIPAGSFAN-----LQSLEKLFLYSNNIQELH--AGTFAGLT 285
+ EL LG + +E G F L E +L N+I H A
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI---HALAAKLLQ-E 111
Query: 286 NLTALFLNNNLLR-YLD---------TKAFEPMLHLKKLQLDSNK--------------- 320
N T L L++ Y+ K L + + + +
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-FRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 321 --LQYLATDSLSLLPNLI-----TLK-LAKNPWHCDCAILY-----MARWLR 359
L+ L L+ +LI TL L + D ++ + WL
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTL--DAEKVFTQGLNILEWLE 220
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 52.8 bits (127), Expect = 9e-08
Identities = 41/252 (16%), Positives = 80/252 (31%), Gaps = 52/252 (20%)
Query: 55 NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFK 114
L ++ AF + E+ L +L +F NL DLS+ I LP++ F
Sbjct: 144 EGLKSIGDMAFFN-STVQEIVFPST-LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV 201
Query: 115 GAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQS 174
+ V L ++ + + F L+ +++ +NV ++I F + +KL +
Sbjct: 202 Y-AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENV-STIGQEAFRE-SGITTVKLPN 257
Query: 175 NRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFS 234
++ I F Y L + + +
Sbjct: 258 G-------------------------VTNIASRAFYYCPELAEVTTYGSTFND------- 285
Query: 235 QLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN 294
+ I L + + +I+ L G G +T L +
Sbjct: 286 ------------DPEAMIHPYCLEGCPKLARFEI-PESIRILGQGLLGGNRKVTQLTIPA 332
Query: 295 NLLRYLDTKAFE 306
N + ++ AF
Sbjct: 333 N-VTQINFSAFN 343
Score = 47.8 bits (114), Expect = 3e-06
Identities = 22/174 (12%), Positives = 60/174 (34%), Gaps = 14/174 (8%)
Query: 57 LSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGA 116
L + AF +L +++ +N +S + + F + ++T+ L + + S F
Sbjct: 214 LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRES-GITTVKLPNG-VTNIASRAFYYC 270
Query: 117 IRLTVVQLS-----YNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLK 171
L V + + L ++ +++ + G G + +L
Sbjct: 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESI-RILGQGLLGGNRKVTQLT 329
Query: 172 LQSNRINQLPPGIFDD--LKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
+ +N + Q+ F++ +K + + + +T + +
Sbjct: 330 IPAN-VTQINFSAFNNTGIKEVKVEG--TTPPQVFEKVWYGFPDDITVIRVPAE 380
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 52.4 bits (126), Expect = 1e-07
Identities = 45/240 (18%), Positives = 83/240 (34%), Gaps = 35/240 (14%)
Query: 142 SLEELDLSQNVLTSIQ-----YGTFSGMYSLKRLKLQSNRINQLPPG---IFDDLKYLDF 193
SL +L+L+ +T ++ SG ++L + L S +++ P G +
Sbjct: 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGLRTLLPVFLRARK 130
Query: 194 LSLRNNRLS-----FIRPGLFNYFKHLTFLELSENWISSLNGDEFSQL----TSLKELHL 244
L L+ N L +R L + +T L LS N +++ + TS+ L L
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190
Query: 245 GQNYIETIPAGSFANL----QSLEKLFLYSNNIQELHAGTFAGL----TNLTALFLNNNL 296
+ A + L++L + N + A A +L L L N
Sbjct: 191 LHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250
Query: 297 LRYLDTKAF-------EPMLHLKKLQLDSNKLQYLATDSLS-LLPNLITLKLAKNPWHCD 348
L + E + + + + LS + NL + A+ H +
Sbjct: 251 LSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLE 310
Score = 47.8 bits (114), Expect = 3e-06
Identities = 33/170 (19%), Positives = 54/170 (31%), Gaps = 22/170 (12%)
Query: 213 KHLTFLELSENWISSLNGDEFSQL-----TSLKELHLGQNYIETIPAGSFAN-LQSLEKL 266
L L L+ ++ + + + +L E++L ++ + KL
Sbjct: 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131
Query: 267 FLYSNNIQELHAGTFAGL-----TNLTALFLNNNLLRYLDTKAFEPML----HLKKLQLD 317
L N++ L +T L L+NN L L + L L
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191
Query: 318 SNKL-----QYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANR 362
L + LA L L L +A N A L +AR R +
Sbjct: 192 HTGLGDEGLELLA-AQLDRNRQLQELNVAYNGAGDTAA-LALARAAREHP 239
Score = 46.2 bits (110), Expect = 1e-05
Identities = 44/248 (17%), Positives = 73/248 (29%), Gaps = 48/248 (19%)
Query: 142 SLEELDLSQNVLTSIQYGTF-SGMYSLKRLKLQSNRI-----NQLPPGIFDDLKYLDFLS 195
+L+E++L+ L T ++L LQ N + L + D + L
Sbjct: 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLR 161
Query: 196 LRNNRLS-----FIRPGL-FNYFKHLTFLELSENWISSLNGDEFSQL----TSLKELHLG 245
L NN L+ + GL N +T L L + + + L+EL++
Sbjct: 162 LSNNPLTAAGVAVLMEGLAGN--TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219
Query: 246 QNYIETIPAGSFANL----QSLEKLFLYSNNIQEL-------HAGTFAGLTNLTALFLNN 294
N A + A SLE L LY N + G G +
Sbjct: 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEG 279
Query: 295 NLL---------------RYLDTKAFEPMLHLKKLQLDSNKLQYLA----TDSLSLLPNL 335
+ D + L L L+ ++ L L + +
Sbjct: 280 TAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEV 339
Query: 336 ITLKLAKN 343
L
Sbjct: 340 RALLEQLG 347
Score = 42.4 bits (100), Expect = 2e-04
Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 23/136 (16%)
Query: 228 LNGDEFSQ--LTSLKELHLGQNYIETIPAGSFA-------NLQSLEKLFLYSNNIQELHA 278
FS L+SL++L+L + P +L+++ L S +
Sbjct: 61 FQNQRFSAEVLSSLRQLNLAGVRMT--PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGL 118
Query: 279 GTFA-GLTNLTALFLNNNLLRYLDTKAF-----EPMLHLKKLQLDSNKL-----QYLATD 327
T L L N L K + L+L +N L L +
Sbjct: 119 RTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM-E 177
Query: 328 SLSLLPNLITLKLAKN 343
L+ ++ L L
Sbjct: 178 GLAGNTSVTHLSLLHT 193
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 1e-05
Identities = 47/363 (12%), Positives = 111/363 (30%), Gaps = 83/363 (22%)
Query: 57 LSTLSKDAFTGLYKLTELKLRKNHL---SELPGKLFI------STINLSTMDLSQNLIKT 107
++ S + ++ ++ L L + + + +LS K
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNAFNLS---CKI 268
Query: 108 LPSTFFKGAI-RLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
L +T FK L+ ++ +++ + D E L L
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD----EVKSLLLKYL---------DC-R 314
Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELS---EN 223
+ L + N I + +R+ ++ +KH+ +L+ E+
Sbjct: 315 PQDLPREVLTTNPRRLSIIAES-------IRDG------LATWDNWKHVNCDKLTTIIES 361
Query: 224 WISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL----------QSLEKLFLYS--- 270
++ L E+ ++ L + IP + + + KL YS
Sbjct: 362 SLNVLEPAEYRKM--FDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 271 ----NNIQELHAGTFAGLTNLTALF-LNNNLL-RYLDTKAFEPMLHLKKLQLDSNKLQYL 324
+ + + L + L+ +++ Y K F+ L LD ++
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD-DLIPPYLDQYFYSHI 477
Query: 325 A--------TDSLSLLPNLIT--------LKLAKNPWHCDCAILYMARWLRANRRKVWDS 368
+ ++L + ++ W+ +IL + L+ + + D+
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 369 KPT 371
P
Sbjct: 538 DPK 540
Score = 32.1 bits (72), Expect = 0.39
Identities = 28/205 (13%), Positives = 61/205 (29%), Gaps = 67/205 (32%)
Query: 22 PEIHTLSC-WKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLR-KN 79
P LS W ++ D+ V+ +++ S + K + + L K
Sbjct: 388 PT-ILLSLIWFDVIKS---------DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 80 HLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHD 139
L L ++++ YN ++ ++
Sbjct: 438 KLENEY-------------ALHRSIVD------------------HYNIPKTFDSDDL-- 464
Query: 140 LISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
LD QY + LK ++ R+ +F D ++L+ +R++
Sbjct: 465 --IPPYLD---------QYFYSHIGHHLKNIE-HPERMTLFRM-VFLDFRFLE-QKIRHD 510
Query: 200 RLSFIRPG--------LFNYFKHLT 216
++ G L Y ++
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYIC 535
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 40.7 bits (94), Expect = 6e-04
Identities = 25/181 (13%), Positives = 60/181 (33%), Gaps = 22/181 (12%)
Query: 87 KLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEEL 146
LF I+ ++S L S L +++ S+ +L+ L
Sbjct: 143 GLFWGDIDFEEQEISWIEQVDL-SPVLDAMPLLNNLKIKGTNNLSIGKKPRP---NLKSL 198
Query: 147 DLSQNVLTS--IQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL---------KYLDFLS 195
++ L ++ S + +L++L L + G + L +L
Sbjct: 199 EIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLG 258
Query: 196 LRNNRLSFIRPGLF---NYFKHLTFLELSENWISSLNGDEFSQ----LTSLKELHLGQNY 248
+ + + +F + L +++S ++ + LK +++ NY
Sbjct: 259 IVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318
Query: 249 I 249
+
Sbjct: 319 L 319
Score = 39.2 bits (90), Expect = 0.002
Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 25/218 (11%)
Query: 136 VFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLS 195
+F I EE ++S + M L LK++ + +LK L+ +S
Sbjct: 144 LFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIIS 202
Query: 196 LRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAG 255
S + L + +L L L + +++ + P
Sbjct: 203 GGLPD-SVVEDILGSDLPNLEKLVLY------VGVEDYGFDGDMNVFR---------PLF 246
Query: 256 SFANLQSLEKLFLYSNNIQELHAGTFAG---LTNLTALFLNNNLLRYLDTKAF----EPM 308
S +L+ L + Q + F L L + ++ +L + + +
Sbjct: 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306
Query: 309 LHLKKLQLDSNKLQYLATDSL-SLLPNLITLKLAKNPW 345
HLK + + N L L LP I + ++
Sbjct: 307 KHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYD 344
Score = 33.8 bits (76), Expect = 0.083
Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 19/158 (12%)
Query: 86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEE 145
+ + L+ + + ++ L ++ + + DL +LE+
Sbjct: 165 SPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPD-SVVEDILGSDLPNLEK 223
Query: 146 LDLSQNVLTSIQYGTFSGMY---------SLKRLKLQSNRINQLPPGIF---DDLKYLDF 193
L L V G + +LK L + + +F D L L+
Sbjct: 224 LVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLET 283
Query: 194 LSLRNNRLS-----FIRPGLFNYFKHLTFLELSENWIS 226
+ + L+ + + + KHL F+ + N++S
Sbjct: 284 MDISAGVLTDEGARLLLDHV-DKIKHLKFINMKYNYLS 320
Score = 33.8 bits (76), Expect = 0.092
Identities = 31/189 (16%), Positives = 55/189 (29%), Gaps = 31/189 (16%)
Query: 17 PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLY------- 69
L D EE I VD+ + + L+ L L
Sbjct: 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRP 193
Query: 70 KLTELKLRKNHL----------SELPG----KLFISTINLSTMDLSQNLIKTLPSTFFKG 115
L L++ L S+LP L++ + F
Sbjct: 194 NLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP- 252
Query: 116 AIRLTVVQLSYNAIESLPANVFHD---LISLEELDLSQNVLTSIQY----GTFSGMYSLK 168
L + + +++ +F + L LE +D+S VLT + LK
Sbjct: 253 --NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310
Query: 169 RLKLQSNRI 177
+ ++ N +
Sbjct: 311 FINMKYNYL 319
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 37.7 bits (87), Expect = 0.004
Identities = 30/138 (21%), Positives = 46/138 (33%), Gaps = 22/138 (15%)
Query: 142 SLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
S + LDL + L R + + I +++ L L+L NNRL
Sbjct: 128 SQQALDLKGLRSDPDLVAQNIDV-VLNRRSCMAATLR----IIEENIPELLSLNLSNNRL 182
Query: 202 SFIRP--GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQN-----------Y 248
+ + +L L LS N + S + + L+EL L N Y
Sbjct: 183 YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242
Query: 249 IETIPAGSFANLQSLEKL 266
I I L +L
Sbjct: 243 ISAI----RERFPKLLRL 256
Score = 34.6 bits (79), Expect = 0.039
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 286 NLTALFLNNNLLRYLD--TKAFEPMLHLKKLQLDSNKLQYLAT-DSLSLLPNLITLKLAK 342
L +L L+NN L LD + + +LK L L N+L+ D + L L L L
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELWLDG 229
Query: 343 NP 344
N
Sbjct: 230 NS 231
Score = 31.9 bits (72), Expect = 0.30
Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 20/152 (13%)
Query: 19 RCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLS---KDAFTGLYKLTELK 75
R L D++ L D + + ID+ +N+ S ++ + + +L L
Sbjct: 124 RYDGSQQAL-----DLKGLRSDPDLVA--QNIDVVLNRRSCMAATLRIIEENIPELLSLN 176
Query: 76 LRKNHLSELPG--KLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP 133
L N L L + NL ++LS N +K+ ++L + L N++
Sbjct: 177 LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTF 236
Query: 134 AN-------VFHDLISLEELDLSQNVLTSIQY 158
+ + L LD + I +
Sbjct: 237 RDQSTYISAIRERFPKLLRLD-GHELPPPIAF 267
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 35.4 bits (82), Expect = 0.014
Identities = 33/156 (21%), Positives = 53/156 (33%), Gaps = 34/156 (21%)
Query: 166 SLKRLKLQSNRINQLPPG----IFDDLK---YLDFLSLRNNRLS-----FIRPGL-FNYF 212
L+ + L N I +P + LK Y+ S+ R + + L N
Sbjct: 37 DLEEVNL--NNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN-- 92
Query: 213 KHLTFLELSENWISSLNGDEFSQL----TSLKELHLG--QNYIETIPAGSFANL----QS 262
L L + N+IS + TSL EL + + AN+ +
Sbjct: 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTT 152
Query: 263 LEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLR 298
L K + G +N A+ NN+L+R
Sbjct: 153 LLKFGYHFTQQ-----GPRLRASN--AMMNNNDLVR 181
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.065
Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 6/25 (24%)
Query: 311 LKKLQLDSNKLQYLATDSLSLLPNL 335
LKKLQ S KL Y A DS P L
Sbjct: 22 LKKLQ-ASLKL-Y-ADDS---APAL 40
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 32.2 bits (73), Expect = 0.33
Identities = 29/207 (14%), Positives = 58/207 (28%), Gaps = 22/207 (10%)
Query: 110 STFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS------QNVLTSIQYGTFSG 163
L ++L+ A + LEEL + + S SG
Sbjct: 204 ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263
Query: 164 MYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLE---- 219
L+ L + + P ++ L L+L + L L+
Sbjct: 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ--SYDLVKLLCQCPKLQRLWV 321
Query: 220 ---LSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
+ + + L S L+EL + + + Q L + + ++ +
Sbjct: 322 LDYIEDAGLEVL----ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377
Query: 277 HAGTFAGLTN--LTALFLNNNLLRYLD 301
+TN L + N +
Sbjct: 378 LYF-CRQMTNAALITIARNRPNMTRFR 403
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 30.2 bits (68), Expect = 0.78
Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 21/115 (18%)
Query: 131 SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKY 190
LP D ++ +D + + + SI + G+ +++++L I D
Sbjct: 52 HLP-TGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC------HYIEDG--C 102
Query: 191 LDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENW-ISSLNGDEFSQLTSLKELHL 244
L+ LS L N K + +E+ ++ +LK L L
Sbjct: 103 LERLS-----------QLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFL 146
Score = 27.9 bits (62), Expect = 3.9
Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 16/101 (15%)
Query: 255 GSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKL 314
+ ++ + + I + GL + + L Y++ + L +L
Sbjct: 55 TGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC--HYIEDGC---LERLSQL 109
Query: 315 QLDSNKLQYLA-------TD----SLSLLPNLITLKLAKNP 344
+ + + TD +L NL L L+ P
Sbjct: 110 ENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150
Score = 27.1 bits (60), Expect = 7.4
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 18 CRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLR 77
C H W++D LP + I+ ID + + ++ D GL + +++L
Sbjct: 34 CGAMVRYHGQQRWQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLC 93
Query: 78 KNH 80
K H
Sbjct: 94 KCH 96
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 28.7 bits (64), Expect = 2.3
Identities = 19/137 (13%), Positives = 43/137 (31%), Gaps = 29/137 (21%)
Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNL 296
T LKE+++ N ++ + +L ++ ++ L N
Sbjct: 41 TDLKEVNI--NNMKRVSKERIRSLIEA----ACNS-------------KHIEKFSLANTA 81
Query: 297 LRYLDTKAFEPML----HLKKLQLDSNKLQYLATDSL--SLLPN--LITLKLAKNPWHC- 347
+ + + ++ L+ L ++SN L L S L ++ K
Sbjct: 82 ISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL 141
Query: 348 -DCAILYMARWLRANRR 363
+ + M + N
Sbjct: 142 GNQVEMDMMMAIEENES 158
Score = 28.7 bits (64), Expect = 3.0
Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 22/125 (17%)
Query: 189 KYLDFLSLRNNRLSFIRPGLFNYF----KHLTFLELSENWISSLNGDEFSQL----TSLK 240
K+++ SL N +S L L + N+++ + S+
Sbjct: 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIV 129
Query: 241 ELHLGQNYIETIP---AGSFANL----QSLEKLFLYSNNIQELHAGTFAGLTNLTALFLN 293
E + +SL ++ + +++ H + AL N
Sbjct: 130 EFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEARHRVS-------EALERN 182
Query: 294 NNLLR 298
+R
Sbjct: 183 YERVR 187
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 29.1 bits (66), Expect = 3.2
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 163 GMYSLKRLKLQSNRINQLPPGIFDDL 188
GM + + + RI++LPP +F+
Sbjct: 1 GMAESRPAR-RFARIDRLPPYVFNIT 25
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo
sapiens} SCOP: d.144.1.7
Length = 287
Score = 28.0 bits (63), Expect = 4.8
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 17 PCRCRPEIHTL--SCWKQDMEELP-FDQI 42
P C PE++ L CW E+ P F +
Sbjct: 235 PPECPPELYALMSDCWIYKWEDRPDFLTV 263
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 28.0 bits (61), Expect = 5.4
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 156 IQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF 193
QYG + Y + + R+ L P F LD
Sbjct: 16 FQYGNYCKYYGYRNPSCEDGRLRVLKPEWFRGRDVLDL 53
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 28.1 bits (63), Expect = 5.4
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 17 PCRCRPEIHTL--SCWKQDMEELP-FDQI 42
P C E++ + CWK EE P F+ I
Sbjct: 407 PENCPEELYNIMMRCWKNRPEERPTFEYI 435
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen
typrosine kinase, active conformation, structural
genomics, structural genomix; HET: STI; 1.57A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A*
3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A*
3vf9_A*
Length = 291
Score = 28.0 bits (63), Expect = 6.1
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 17 PCRCRPEIHTL--SCWKQDMEELP-FDQI 42
P C E++ L CW D+E P F +
Sbjct: 242 PAGCPREMYDLMNLCWTYDVENRPGFAAV 270
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A*
3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A*
3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A*
3ad6_A* 3kmm_A* 1qpd_A* ...
Length = 279
Score = 27.6 bits (62), Expect = 7.0
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 17 PCRCRPEIHTL--SCWKQDMEELP-FDQII 43
P C E++ L CWK+ E+ P FD +
Sbjct: 232 PDNCPEELYQLMRLCWKERPEDRPTFDYLR 261
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 27.6 bits (61), Expect = 8.0
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 17 PCRCRPEIHTL--SCWKQDMEELP-FDQI 42
P C PE++ L CW E+ P F +
Sbjct: 561 PPECPPELYALMSDCWIYKWEDRPDFLTV 589
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.415
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,975,990
Number of extensions: 344156
Number of successful extensions: 5580
Number of sequences better than 10.0: 1
Number of HSP's gapped: 947
Number of HSP's successfully gapped: 398
Length of query: 404
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 308
Effective length of database: 4,021,377
Effective search space: 1238584116
Effective search space used: 1238584116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)