RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12291
(404 letters)
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 119 bits (297), Expect = 2e-31
Identities = 66/274 (24%), Positives = 116/274 (42%), Gaps = 6/274 (2%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQ-SNRIN 178
++++P + + + L N ++ + +F +L L L +
Sbjct: 14 VTTSCPQQGLQAVPVGIPAAS---QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70
Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
N +L + P F+ L L L + L F L +
Sbjct: 71 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130
Query: 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLR 298
L+ L+L N ++ +P +F +L +L LFL+ N I + F GL +L L L+ N +
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Query: 299 YLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWL 358
++ AF + L L L +N L L T++L+ L L L+L NPW CDC + WL
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250
Query: 359 RANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDLC 392
+ + + S+ C P L G+ ++ ++ +DL
Sbjct: 251 Q--KFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282
Score = 88.3 bits (217), Expect = 2e-20
Identities = 67/264 (25%), Positives = 105/264 (39%), Gaps = 7/264 (2%)
Query: 14 CEGPCRCRPE-IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLT 72
C G C C E T SC +Q ++ +P IP + I L N++S + +F LT
Sbjct: 2 CPGACVCYNEPKVTTSCPQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLT 59
Query: 73 ELK-LRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
L + ++++ F G RL + L ++
Sbjct: 60 ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119
Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYL 191
L +F L +L+ L L N L ++ TF + +L L L NRI+ +P F L L
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179
Query: 192 DFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE- 250
D L L NR++ + P F L L L N +S+L + + L +L+ L L N
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239
Query: 251 TIPAGSFANLQSLEKLFLYSNNIQ 274
A L+K S+ +
Sbjct: 240 DCRARPL--WAWLQKFRGSSSEVP 261
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 112 bits (279), Expect = 9e-29
Identities = 75/310 (24%), Positives = 140/310 (45%), Gaps = 19/310 (6%)
Query: 17 PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKL 76
P RC+ + + C +E++P + +P D ++DL N+++ + F L L L L
Sbjct: 5 PFRCQCHLRVVQCSDLGLEKVP--KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLIL 62
Query: 77 RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
N +S++ F + L + LS+N +K LP K L ++ N I + +V
Sbjct: 63 INNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL---RVHENEITKVRKSV 119
Query: 137 FHDLISLEELDLSQNVLTSIQY--GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFL 194
F+ L + ++L N L S G F GM L +++ I +P G+ L L
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH-- 177
Query: 195 SLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA 254
L N+++ + +L L LS N IS+++ + L+ELHL N + +P
Sbjct: 178 -LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 236
Query: 255 GSFANLQSLEKLFLYSNNIQELHAGTFAG------LTNLTALFLNNNLLRYLDT--KAFE 306
G + + ++ ++L++NNI + + F + + + L +N ++Y + F
Sbjct: 237 GLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 295
Query: 307 PMLHLKKLQL 316
+ +QL
Sbjct: 296 CVYVRAAVQL 305
Score = 98.2 bits (243), Expect = 1e-23
Identities = 70/300 (23%), Positives = 116/300 (38%), Gaps = 18/300 (6%)
Query: 71 LTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE 130
L ++ L ++P L T L DL N I + FK L + L N I
Sbjct: 12 LRVVQCSDLGLEKVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68
Query: 131 SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKY 190
+ F L+ LE L LS+N L + + L+ N I ++ +F+ L
Sbjct: 69 KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH---ENEITKVRKSVFNGLNQ 125
Query: 191 LDFLSLRNNRLSFIR--PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY 248
+ + L N L G F K L+++ +++ I+++ SL ELHL N
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNK 182
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPM 308
I + A S L +L KL L N+I + G+ A +L L LNNN L
Sbjct: 183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADH 241
Query: 309 LHLKKLQLDSNKLQYLATDS------LSLLPNLITLKLAKNPWHCDCAILYMARWLRANR 362
+++ + L +N + + ++ + + + L NP R +
Sbjct: 242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301
Score = 32.7 bits (73), Expect = 0.070
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 8/99 (8%)
Query: 10 WYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAF---- 65
G P + L + ++P I+V+ L N +S + + F
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266
Query: 66 --TGLYKLTELKLRKNHLS--ELPGKLFISTINLSTMDL 100
T + + L N + E+ F + + L
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 87.1 bits (214), Expect = 4e-20
Identities = 70/251 (27%), Positives = 97/251 (38%), Gaps = 31/251 (12%)
Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
V + +LP ++ D L LS+N+L + T L +L L +R
Sbjct: 12 HLEVNCDKRNLTALPPDLPKDT---TILHLSENLLYTFSLATLMPYTRLTQLNL--DRAE 66
Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
+ L L ++ P L LT L++S N ++SL L
Sbjct: 67 LTKLQVDGTLPVL-GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLR 298
L+EL+L N ++T+P G LEKL L +NN+ EL AG GL NL L L N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 299 YLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWL 358
+ F L L NPW C+C ILY RWL
Sbjct: 186 TIPKGFFG-------------------------SHLLPFAFLHGNPWLCNCEILYFRRWL 220
Query: 359 RANRRKVWDSK 369
+ N V+ K
Sbjct: 221 QDNAENVYVWK 231
Score = 65.9 bits (159), Expect = 7e-13
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 6/206 (2%)
Query: 18 CRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLR 77
++C K+++ LP D +P D ++ L N L T S +LT+L L
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 78 KNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVF 137
+ L++L + + + +Q L + +S+N + SLP
Sbjct: 64 RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV---LDVSFNRLTSLPLGAL 120
Query: 138 HDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLR 197
L L+EL L N L ++ G + L++L L +N + +LP G+ + L+ LD L L+
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180
Query: 198 NNRLSFIRPGLFNYFKHLTFLELSEN 223
N L I G F L F L N
Sbjct: 181 ENSLYTIPKGFFG-SHLLPFAFLHGN 205
Score = 44.7 bits (104), Expect = 7e-06
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 232 EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALF 291
E S++ S E++ + + +P + L L N + T T LT L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPKDTTI---LHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 292 LNNNLLRYLDTKAFEPMLHL 311
L+ L L P+L
Sbjct: 62 LDRAELTKLQVDGTLPVLGT 81
Score = 37.8 bits (86), Expect = 0.001
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 1/141 (0%)
Query: 11 YRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYK 70
P + TL ++ LP + V+D+ N+L++L A GL +
Sbjct: 66 ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 71 LTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE 130
L EL L+ N L LP L T L + L+ N + LP+ G L + L N++
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 131 SLPANVFHDLISLEELDLSQN 151
++P F L L N
Sbjct: 186 TIPKGFF-GSHLLPFAFLHGN 205
Score = 32.0 bits (71), Expect = 0.091
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 1/118 (0%)
Query: 10 WYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLY 69
+ + +++ + L N+L TL T
Sbjct: 89 LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148
Query: 70 KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN 127
KL +L L N+L+ELP L NL T+ L +N + T+P FF G+ L L N
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 76.6 bits (187), Expect = 6e-16
Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 16/199 (8%)
Query: 97 TMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI 156
++ + N I + L + L+ N ++ + L +L +LDL+ N ++++
Sbjct: 201 SLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNL 256
Query: 157 QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLT 216
SG+ L LKL +N+I+ + P L L L L N+L I P + K+LT
Sbjct: 257 --APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 310
Query: 217 FLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
+L L N IS + S LT L+ L N + + S ANL ++ L N I +L
Sbjct: 311 YLTLYFNNISDI--SPVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDL 366
Query: 277 HAGTFAGLTNLTALFLNNN 295
A LT +T L LN+
Sbjct: 367 TP--LANLTRITQLGLNDQ 383
Score = 72.3 bits (176), Expect = 1e-14
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 18/205 (8%)
Query: 68 LYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN 127
L L L N +S++ ++ NL + L+ N +K + + LT + L+ N
Sbjct: 196 LTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIGT--LASLTNLTDLDLANN 251
Query: 128 AIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP-PGIFD 186
I +L L L EL L N +++I S + L L NQL
Sbjct: 252 QISNLAP--LSGLTKLTELKLGANQISNI-----SPLAGLTALTNLELNENQLEDISPIS 304
Query: 187 DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQ 246
+LK L +L+L N +S I P + L L + N +S + + LT++ L G
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGH 360
Query: 247 NYIETIPAGSFANLQSLEKLFLYSN 271
N I + ANL + +L L
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383
Score = 64.6 bits (156), Expect = 4e-12
Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 16/207 (7%)
Query: 137 FHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSL 196
L +LE L + N ++ I + +L L L N++ + L L L L
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIGT--LASLTNLTDLDL 248
Query: 197 RNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS 256
NN++S + P + LT L+L N IS+++ + LT+L L L +N +E I
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--P 302
Query: 257 FANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQL 316
+NL++L L LY NNI ++ + LT L LF NN + + + + ++ L
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSA 358
Query: 317 DSNKLQYLATDSLSLLPNLITLKLAKN 343
N++ L L+ L + L L
Sbjct: 359 GHNQISDL--TPLANLTRITQLGLNDQ 383
Score = 48.8 bits (115), Expect = 6e-07
Identities = 68/368 (18%), Positives = 125/368 (33%), Gaps = 73/368 (19%)
Query: 35 EELPFDQIIPVDI--RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIST 92
++ P +QI + + + + + T L ++T L+ + + + G
Sbjct: 8 QDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYL 65
Query: 93 INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPA------------------ 134
NL+ ++ S N + + K +L + ++ N I +
Sbjct: 66 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 123
Query: 135 ------------------NVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNR 176
N D+ +L L Q + Q + +L L+
Sbjct: 124 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183
Query: 177 INQLPPGIFD-DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQ 235
N++ L L+ L NN++S I P +L L L+ N + + +
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLAS 239
Query: 236 LTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL------------------- 276
LT+L +L L N I + + L L +L L +N I +
Sbjct: 240 LTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297
Query: 277 -HAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
+ L NLT L L N + D + L++L +NK+ + SL+ L N+
Sbjct: 298 EDISPISNLKNLTYLTLYFNNIS--DISPVSSLTKLQRLFFANNKVSDV--SSLANLTNI 353
Query: 336 ITLKLAKN 343
L N
Sbjct: 354 NWLSAGHN 361
Score = 47.3 bits (111), Expect = 2e-06
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 6/120 (5%)
Query: 9 SWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGL 68
+ T ++ E ++ + L N +S +S + L
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSL 328
Query: 69 YKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNA 128
KL L N +S++ + N++ + N I L R+T + L+ A
Sbjct: 329 TKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 384
Score = 39.6 bits (91), Expect = 4e-04
Identities = 59/315 (18%), Positives = 107/315 (33%), Gaps = 53/315 (16%)
Query: 99 DLSQNLIKTLPSTFFKGAI------RLTVVQLSYNAIESLPANVFHDLISLEELDLSQNV 152
L++ + L T + ++T +Q I+S+ L +L +++ S N
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQ 77
Query: 153 LTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFD-------------------------- 186
LT I + L + + +N+I + P
Sbjct: 78 LTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135
Query: 187 -------DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN----GDEFSQ 235
+ + LS + K L L E S N ++
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195
Query: 236 LTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNN 295
LT+L+ L N I I +L++L L N ++++ GT A LTNLT L L NN
Sbjct: 196 LTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 251
Query: 296 LLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMA 355
+ L + L +L+L +N++ ++ + + L + + L
Sbjct: 252 QISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309
Query: 356 RWLRANRRKVWDSKP 370
+L + D P
Sbjct: 310 TYLTLYFNNISDISP 324
Score = 38.1 bits (87), Expect = 0.002
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 6/98 (6%)
Query: 172 LQSNRINQLPP--GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229
L S I Q P IF D + + + + +T L+ I S++
Sbjct: 1 LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID 60
Query: 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLF 267
G L +L +++ N + I NL L +
Sbjct: 61 G--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL 94
Score = 35.7 bits (81), Expect = 0.008
Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 6/115 (5%)
Query: 258 ANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLD 317
L K L N+ + + L +T L + ++ +D E + +L ++
Sbjct: 19 TALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFS 74
Query: 318 SNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTC 372
+N+L + L L L+ + + N + + +
Sbjct: 75 NNQLTDI--TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 127
Score = 31.9 bits (71), Expect = 0.13
Identities = 50/271 (18%), Positives = 90/271 (33%), Gaps = 47/271 (17%)
Query: 139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRN 198
DL + L + + SI + +L ++ +N++ + P +L L + + N
Sbjct: 42 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN 97
Query: 199 NRLSFIRPGLF---------------------------------NYFKHLTFLELSENWI 225
N+++ I P N ++ L +
Sbjct: 98 NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157
Query: 226 SSLNGDEFSQLTSLKELHLGQNYI----ETIPAGSFANLQSLEKLFLYSNNIQELHAGTF 281
G++ + L L L + + A L +LE L +N I ++
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI 217
Query: 282 AGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLA 341
TNL L LN N L+ + T + +L L L +N++ LA LS L L LKL
Sbjct: 218 L--TNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLG 271
Query: 342 KNPWHCDCAILYMARWLRANRRKVWDSKPTC 372
N + + + +
Sbjct: 272 ANQISNISPLAGLTALTNLELNENQLEDISP 302
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 61.7 bits (148), Expect = 4e-12
Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 3/149 (2%)
Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNN-IQELHAGTFAGLTNLTALFLNNN 295
L ++ ++L +L++ + +Q L GL L L + +
Sbjct: 8 HGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66
Query: 296 LLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMA 355
LR++ AF L +L L N L+ L+ ++ L L+ NP HC CA+ ++
Sbjct: 67 GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL-VLSGNPLHCSCALRWLQ 125
Query: 356 RWLRANRRKVWDSKPTCRGPGNLGGKSVE 384
RW V + K C G G L
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAHMPNA 154
Score = 35.5 bits (80), Expect = 0.004
Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 2/147 (1%)
Query: 142 SLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNR-INQLPPGIFDDLKYLDFLSLRNNR 200
L +++ + G +L L +++ + + L L L L++ +
Sbjct: 9 GSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 201 LSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL 260
L F+ P F++ L+ L LS N + SL+ L+ + + G +
Sbjct: 68 LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRW 127
Query: 261 QSLEKLFLYSNNIQELHAGTFAGLTNL 287
+ + +Q G A + N
Sbjct: 128 EEEGLGGVPEQKLQCHGQGPLAHMPNA 154
Score = 25.9 bits (55), Expect = 6.4
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 2/136 (1%)
Query: 49 VIDLGINQLSTLSKDAFTGLYKLTELKLRKN-HLSELPGKLFISTINLSTMDLSQNLIKT 107
+ + G LTEL + HL L + L + + ++ ++
Sbjct: 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70
Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSL 167
+ F RL+ + LS+NA+ESL L E + + S
Sbjct: 71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEE 130
Query: 168 KRLKLQSNRINQLPPG 183
+ ++ G
Sbjct: 131 GLGGVPEQKLQCHGQG 146
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 57.6 bits (137), Expect = 4e-10
Identities = 38/264 (14%), Positives = 80/264 (30%), Gaps = 26/264 (9%)
Query: 13 CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLT 72
C C C C + + E+P D +P + + + +L + K AF+G L
Sbjct: 1 CHHRICHCSN--RVFLCQESKVTEIPSD--LPRNAIELRFVLTKLRVIQKGAFSGFGDLE 56
Query: 73 ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL 132
++++ +N +I+ + + + + + +
Sbjct: 57 KIEISQND--------------------VLEVIEADVFSNLPKLHEIRIEKANNLLYINP 96
Query: 133 PANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLD 192
A + + + + S L ++ N
Sbjct: 97 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 156
Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
L L N + I FN + N + L D F + L + + I ++
Sbjct: 157 ILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 216
Query: 253 PAGSFANLQSLEKLFLYSNNIQEL 276
P+ NL+ L N+++L
Sbjct: 217 PSYGLENLKKLRARST--YNLKKL 238
Score = 52.6 bits (124), Expect = 2e-08
Identities = 34/228 (14%), Positives = 68/228 (29%), Gaps = 7/228 (3%)
Query: 72 TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNA--- 128
+++ ++E+P L + I L ++ + F G L +++S N
Sbjct: 11 RVFLCQESKVTEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67
Query: 129 -IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDD 187
IE+ + L + + + + + + + I
Sbjct: 68 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127
Query: 188 LKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQN 247
K L + N + R L L++N I ++ F+ + N
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187
Query: 248 YIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNN 295
+E +P F L + I L + L L A N
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235
Score = 47.6 bits (111), Expect = 7e-07
Identities = 38/225 (16%), Positives = 62/225 (27%), Gaps = 7/225 (3%)
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNR--- 176
V + + +P+++ + EL L IQ G FSG L+++++ N
Sbjct: 11 RVFLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67
Query: 177 -INQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQ 235
I L + N + + S
Sbjct: 68 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127
Query: 236 LTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNN 295
L ++ N L+L N IQE+H F G +NN
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187
Query: 296 LLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKL 340
L L F L + ++ L + L L L
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232
Score = 42.6 bits (98), Expect = 3e-05
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
+ N +E LP +VFH LD+S+ + S+ + L+ +
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236
Query: 179 QLPP 182
+LP
Sbjct: 237 KLPT 240
Score = 39.9 bits (91), Expect = 3e-04
Identities = 15/110 (13%), Positives = 25/110 (22%), Gaps = 2/110 (1%)
Query: 1 WIKSDKEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTL 60
I+ + + E + N L L
Sbjct: 133 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEEL 192
Query: 61 SKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPS 110
D F G L + + + LP + L +K LP+
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN--LKKLPT 240
Score = 36.0 bits (81), Expect = 0.006
Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 2/125 (1%)
Query: 9 SWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGL 68
+ + + E + + ++ L N + + AF G
Sbjct: 117 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT 176
Query: 69 YKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNA 128
N+L ELP +F +D+S+ I +LPS + +L S
Sbjct: 177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA--RSTYN 234
Query: 129 IESLP 133
++ LP
Sbjct: 235 LKKLP 239
Score = 30.3 bits (66), Expect = 0.38
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 238 SLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNN 295
S + ++ + IP+ N L ++ + G F+G +L + ++ N
Sbjct: 9 SNRVFLCQESKVTEIPSDLPRNAIELR---FVLTKLRVIQKGAFSGFGDLEKIEISQN 63
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 51.0 bits (121), Expect = 2e-08
Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 9/163 (5%)
Query: 147 DLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRP 206
+L + ++ S Y + L + P L+ R++ + +
Sbjct: 3 ELKPEQVEQLK-LIMSKRYDGSQQALDLKGLRSDP--DLVAQNIDVVLNRRSSMAATL-R 58
Query: 207 GLFNYFKHLTFLELSENWISSLNG--DEFSQLTSLKELHLGQNYIETIPAGSFANLQSLE 264
+ L L LS N + L+ + +LK L+L N +++ LE
Sbjct: 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118
Query: 265 KLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEP 307
+L+L N++ + ++ + F L LD P
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAIRERFPK---LLRLDGHELPP 158
Score = 44.0 bits (103), Expect = 5e-06
Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 6/143 (4%)
Query: 75 KLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPA 134
+L+ + +L + + S L +++ P V+ + +L
Sbjct: 3 ELKPEQVEQLKLIMS-KRYDGSQQALDLKGLRSDPD--LVAQNIDVVLNRRSSMAATLR- 58
Query: 135 NVFHDLISLEELDLSQNVLTSIQ--YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLD 192
+ ++ L L+LS N L + +LK L L N + L+
Sbjct: 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118
Query: 193 FLSLRNNRLSFIRPGLFNYFKHL 215
L L N LS Y +
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAI 141
Score = 43.3 bits (101), Expect = 1e-05
Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 10/117 (8%)
Query: 231 DEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNI--QELHAGTFAGLTNLT 288
+ L+ + T+ N+ L L L +N + + + NL
Sbjct: 36 PDLVAQNIDVVLNRRSSMAATLR-IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLK 94
Query: 289 ALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDS-------LSLLPNLITL 338
L L+ N L+ L L++L LD N L D P L+ L
Sbjct: 95 ILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRL 151
Score = 32.9 bits (74), Expect = 0.036
Identities = 27/128 (21%), Positives = 41/128 (32%), Gaps = 6/128 (4%)
Query: 219 ELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHA 278
EL + L S+ + L + + P L S+ L
Sbjct: 3 ELKPEQVEQLKL-IMSKRYDGSQQALDLKGLRSDP--DLVAQNIDVVLNRRSSMAATLR- 58
Query: 279 GTFAGLTNLTALFLNNNLLRYLD--TKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLI 336
+ L +L L+NN L LD + + +LK L L N+L+ L
Sbjct: 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118
Query: 337 TLKLAKNP 344
L L N
Sbjct: 119 ELWLDGNS 126
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 49.8 bits (117), Expect = 8e-08
Identities = 43/204 (21%), Positives = 79/204 (38%), Gaps = 31/204 (15%)
Query: 194 LSLRNNRLSFIRPGLFNYFKHLTFLELSEN-WISSLNGDEFSQLTSLKELHLGQNYIETI 252
+ L I + H T L L++N + F +L L +L L +N + I
Sbjct: 13 VDCTGRGLKEIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69
Query: 253 PAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLK 312
+F +++L L N I+E+ F GL L L L +N + + +FE +
Sbjct: 70 EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL---- 125
Query: 313 KLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTC 372
+L +L LA NP++C+C + + A W ++ + C
Sbjct: 126 --------------------NSLTSLNLASNPFNCNCHLAWFAEW--LRKKSLNGGAARC 163
Query: 373 RGPGNLGGKSVEDMSFDDL-CEGQ 395
P + ++D+ + C +
Sbjct: 164 GAPSKVRDVQIKDLPHSEFKCSSE 187
Score = 49.4 bits (116), Expect = 1e-07
Identities = 40/184 (21%), Positives = 67/184 (36%), Gaps = 6/184 (3%)
Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
+ + ++P I L N GLF HL LEL N +
Sbjct: 9 EGTTVDCTGRGLKEIPRDIPLHTTELLLND--NELGRISSDGLFGRLPHLVKLELKRNQL 66
Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLT 285
+ + + F + ++EL LG+N I+ I F L L+ L LY N I + G+F L
Sbjct: 67 TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126
Query: 286 NLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW 345
+LT + + L+K L+ + A + ++ L + +
Sbjct: 127 SLT-SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVR---DVQIKDLPHSEF 182
Query: 346 HCDC 349
C
Sbjct: 183 KCSS 186
Score = 40.2 bits (92), Expect = 1e-04
Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 31/210 (14%)
Query: 14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTE 73
C C C T+ C + ++E+P D IP+ + L N
Sbjct: 2 CPAMCHCEGT--TVDCTGRGLKEIPRD--IPLHTTELLLNDN------------------ 39
Query: 74 LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP 133
LF +L ++L +N + + F+GA + +QL N I+ +
Sbjct: 40 -----ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94
Query: 134 ANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF 193
+F L L+ L+L N ++ + G+F + SL N + + ++
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS----LNLASNPFNCNCHLAWFAEW 150
Query: 194 LSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
L ++ R G + + + +L +
Sbjct: 151 LRKKSLNGGAARCGAPSKVRDVQIKDLPHS 180
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 48.0 bits (113), Expect = 2e-07
Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 9/149 (6%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
V+L+ IE + + + ELDL + I+ + + + N I +L
Sbjct: 1 VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD 57
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNG-DEFSQLTSLK 240
F L+ L L + NNR+ I GL LT L L+ N + L D + L SL
Sbjct: 58 G--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 115
Query: 241 ELHLGQNYIETIP---AGSFANLQSLEKL 266
L + +N + + + L
Sbjct: 116 YLCILRNPVTNKKHYRLYVIYKVPQVRVL 144
Score = 43.8 bits (102), Expect = 6e-06
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 6/131 (4%)
Query: 220 LSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAG 279
L+ I +++ +EL L I I A L + + N I++L
Sbjct: 3 LTAELIE--QAAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD-- 57
Query: 280 TFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT-DSLSLLPNLITL 338
F L L L +NNN + + + + L +L L +N L L D L+ L +L L
Sbjct: 58 GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 117
Query: 339 KLAKNPWHCDC 349
+ +NP
Sbjct: 118 CILRNPVTNKK 128
Score = 35.3 bits (80), Expect = 0.005
Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 9/152 (5%)
Query: 75 KLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPA 134
KL + + + + + +DL I + + + + S N I L
Sbjct: 2 KLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIRKLDG 58
Query: 135 NVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFD-DLKYLDF 193
F L L+ L ++ N + I G + L L L +N + +L LK L +
Sbjct: 59 --FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 116
Query: 194 LSLRN---NRLSFIRPGLFNYFKHLTFLELSE 222
L + R + + L+ +
Sbjct: 117 LCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 148
Score = 32.2 bits (72), Expect = 0.050
Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 5/138 (3%)
Query: 44 PVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN 103
V R +DL ++ + + L + + N + +L G + L T+ ++ N
Sbjct: 17 AVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDGFPLLR--RLKTLLVNNN 73
Query: 104 LIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFH-DLISLEELDLSQNVLTSIQYGTFS 162
I + + LT + L+ N++ L L SL L + +N +T+ ++
Sbjct: 74 RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133
Query: 163 GMYSLKRLK-LQSNRINQ 179
+Y + +++ L ++
Sbjct: 134 VIYKVPQVRVLDFQKVKL 151
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 48.3 bits (113), Expect = 7e-07
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 209 FNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL 268
F+ L N S+ SL+EL++ N + +PA LE+L
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIA 311
Query: 269 YSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDS 318
N++ E+ NL L + N LR + ++ L+++S
Sbjct: 312 SFNHLAEVP----ELPQNLKQLHVEYNPLREFP----DIPESVEDLRMNS 353
Score = 47.5 bits (111), Expect = 1e-06
Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 12/140 (8%)
Query: 10 WYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLY 69
++ L ++ ++ +N S +
Sbjct: 225 SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP 284
Query: 70 KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAI 129
L EL + N L ELP L + S N + +P L + + YN +
Sbjct: 285 SLEELNVSNNKLIELPALPP----RLERLIASFNHLAEVPELPQN----LKQLHVEYNPL 336
Query: 130 ESLPANVFHDLISLEELDLS 149
P S+E+L ++
Sbjct: 337 REFPDI----PESVEDLRMN 352
Score = 46.0 bits (107), Expect = 5e-06
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 123 QLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPP 182
NA + ++ SLEEL++S N L + + L+RL N + ++P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVP- 320
Query: 183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHL 215
+ + L L + N L P + + L
Sbjct: 321 ---ELPQNLKQLHVEYNPLREF-PDIPESVEDL 349
Score = 41.7 bits (96), Expect = 9e-05
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 243 HLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDT 302
N SLE+L + +N + EL A L L + N L +
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVP- 320
Query: 303 KAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
E +LK+L ++ N L+ D + +L
Sbjct: 321 ---ELPQNLKQLHVEYNPLREF-PDIPESVEDL 349
Score = 37.9 bits (86), Expect = 0.002
Identities = 49/312 (15%), Positives = 85/312 (27%), Gaps = 30/312 (9%)
Query: 47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
++L LS+L + L L N L+ELP +L ++ + N +K
Sbjct: 40 AHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPELPQ----SLKSLLVDNNNLK 91
Query: 107 TLP------STFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGT 160
L +L + N+ +V ++ + +
Sbjct: 92 ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151
Query: 161 FSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLEL 220
+ L+ L + L S+ LT +
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211
Query: 221 SENWISSLNGDEFSQLTSLKELHLGQNYIETIPAG--------SFANLQSLEKLFLYSNN 272
N + +L S + + E + F+ L L Y N
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271
Query: 273 IQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLL 332
+L L ++NN L L L++L N L + L
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVP----ELP 323
Query: 333 PNLITLKLAKNP 344
NL L + NP
Sbjct: 324 QNLKQLHVEYNP 335
Score = 35.6 bits (80), Expect = 0.009
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 70 KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAI 129
+ EL+L LS LP +L ++ S N + LP L + + N +
Sbjct: 39 QAHELELNNLGLSSLPELPP----HLESLVASCNSLTELPELPQS----LKSLLVDNNNL 90
Query: 130 ESLP 133
++L
Sbjct: 91 KALS 94
Score = 34.0 bits (76), Expect = 0.030
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 142 SLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
EL+L+ L+S+ L+ L N + +LP LK L + L
Sbjct: 39 QAHELELNNLGLSSLP----ELPPHLESLVASCNSLTELPELPQ-SLKSLLVDNNNLKAL 93
Query: 202 SFIRPGLFNYFKH 214
S + P L
Sbjct: 94 SDLPPLLEYLGVS 106
Score = 32.9 bits (73), Expect = 0.056
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 213 KHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNN 272
+ LEL+ +SSL L+ L N + +P QSL+ L + +NN
Sbjct: 38 RQAHELELNNLGLSSLP----ELPPHLESLVASCNSLTELP----ELPQSLKSLLVDNNN 89
Query: 273 IQELH 277
++ L
Sbjct: 90 LKALS 94
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 44.7 bits (105), Expect = 2e-06
Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 6/111 (5%)
Query: 48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
RV+ L L+ L L +T L L N L LP L + L + S N ++
Sbjct: 1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNALEN 57
Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPA-NVFHDLISLEELDLSQNVLTSIQ 157
+ ++ + L N ++ A L L+L N L +
Sbjct: 58 VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106
Score = 42.8 bits (100), Expect = 7e-06
Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 6/110 (5%)
Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
+ L L + L + L + L L +NRL + P L + +
Sbjct: 1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVL---QASDNAL 55
Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPA-GSFANLQSLEKLFLYSNNIQEL 276
N D + L L+EL L N ++ A + L L L N++ +
Sbjct: 56 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
Score = 42.0 bits (98), Expect = 1e-05
Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 9/125 (7%)
Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
L L+ ++ L QL + L L N + + A L+ LE L N ++ +
Sbjct: 3 LHLAHKDLTVL--CHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVD 59
Query: 278 AGTFAGLTNLTALFLNNNLLRYLDT-KAFEPMLHLKKLQLDSNKL---QYLATDSLSLLP 333
L L L NN L+ + L L L N L + + +LP
Sbjct: 60 GVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117
Query: 334 NLITL 338
++ ++
Sbjct: 118 SVSSI 122
Score = 40.9 bits (95), Expect = 4e-05
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 6/113 (5%)
Query: 240 KELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRY 299
+ LHL + + L + L L N ++ L A L L L ++N L
Sbjct: 1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57
Query: 300 LDTKAFEPMLHLKKLQLDSNKLQYL-ATDSLSLLPNLITLKLAKNPWHCDCAI 351
+D + L++L L +N+LQ A L P L+ L L N + I
Sbjct: 58 VD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108
Score = 37.0 bits (85), Expect = 9e-04
Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 6/109 (5%)
Query: 74 LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP 133
L L L+ L + ++ +DLS N ++ LP L V+Q S NA+E++
Sbjct: 3 LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAA-LRCLEVLQASDNALENVD 59
Query: 134 ANVFHDLISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQSNRINQLP 181
+ +EL L N L L L LQ N + Q
Sbjct: 60 GVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 43.5 bits (101), Expect = 2e-05
Identities = 37/177 (20%), Positives = 57/177 (32%), Gaps = 14/177 (7%)
Query: 118 RLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRI 177
+ + + + I+S+ L ++ +L L+ N LT + L LK
Sbjct: 47 SIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT--------DIKPLANLKNLGWLF 96
Query: 178 NQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLT 237
+ + L + S+LT
Sbjct: 97 LDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLT 156
Query: 238 SLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN 294
L L L N I I A L L+ L+L N+I +L A AGL NL L L +
Sbjct: 157 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFS 209
Score = 43.1 bits (100), Expect = 2e-05
Identities = 27/205 (13%), Positives = 71/205 (34%), Gaps = 16/205 (7%)
Query: 66 TGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLS 125
+ + L+K +++ + ++ ++ + + + IK++ + +T + L+
Sbjct: 21 DAFAETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76
Query: 126 YNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIF 185
N + L +L+ L ++ + + + G+
Sbjct: 77 GNKLTD-----IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131
Query: 186 DDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLG 245
+ N L+ + + I + LT L+ L+L
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-----PLAGLTKLQNLYLS 186
Query: 246 QNYIETIPAGSFANLQSLEKLFLYS 270
+N+I + + A L++L+ L L+S
Sbjct: 187 KNHISDLR--ALAGLKNLDVLELFS 209
Score = 35.8 bits (81), Expect = 0.005
Identities = 34/180 (18%), Positives = 65/180 (36%), Gaps = 14/180 (7%)
Query: 139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRN 198
+L S++++ + + + S+Q + ++ +L L N++ D+K L L
Sbjct: 44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT--------DIKPLANLKNLG 93
Query: 199 NRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA 258
S + + D + + L + +
Sbjct: 94 WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLS 153
Query: 259 NLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDS 318
L L+ L L N I ++ AGLT L L+L+ N + L A + +L L+L S
Sbjct: 154 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFS 209
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 42.7 bits (99), Expect = 3e-05
Identities = 36/228 (15%), Positives = 70/228 (30%), Gaps = 18/228 (7%)
Query: 67 GLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSY 126
L ++ K+++++ + + ++T+ + T+ + L ++L
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQADLD--GITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72
Query: 127 NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFD 186
N I L I+ EL + S G S ++
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 187 DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQ 246
L + L LS + + L+ L L
Sbjct: 133 VLYLDLNQITNISPL----------AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182
Query: 247 NYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN 294
N I I A+L +L ++ L +N I ++ A +NL + L N
Sbjct: 183 NKISDIS--PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
Score = 36.2 bits (82), Expect = 0.005
Identities = 34/192 (17%), Positives = 55/192 (28%), Gaps = 20/192 (10%)
Query: 139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRN 198
DL + L +T+I+ + +L L+L+ N+I L P LS
Sbjct: 39 DLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP 96
Query: 199 NRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQL--------------TSLKELHL 244
+ GL + + L +L
Sbjct: 97 LKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL 156
Query: 245 GQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKA 304
+ ANL L L N I ++ A L NL + L NN + +
Sbjct: 157 SIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--P 212
Query: 305 FEPMLHLKKLQL 316
+L + L
Sbjct: 213 LANTSNLFIVTL 224
Score = 30.8 bits (68), Expect = 0.26
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDE 232
Q IN + P L ++ + ++ +T L ++++ G
Sbjct: 5 QPTAINVIFPD--PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG-- 58
Query: 233 FSQLTSLKELHLGQNYIETIP 253
L +L L L N I +
Sbjct: 59 VQYLNNLIGLELKDNQITDLA 79
Score = 30.4 bits (67), Expect = 0.27
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 4/100 (4%)
Query: 258 ANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLD 317
L + K+ +N+ + T A L +T L + ++ + + +L L+L
Sbjct: 16 PALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELK 71
Query: 318 SNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARW 357
N++ LA + L A L +
Sbjct: 72 DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKT 111
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 40.5 bits (93), Expect = 2e-04
Identities = 37/253 (14%), Positives = 65/253 (25%), Gaps = 29/253 (11%)
Query: 47 IRVIDLGINQLSTLSK--DAFTGLYKLTELKLRKNH-LSELPGKLFISTINLSTMDLSQN 103
+ +DL L + L L L + + L L + ++
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 104 LIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSG 163
+ F L + SYNA+ L +L + N ++ ++
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 164 MYSL-----------------------KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR 200
L S + + +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 201 LSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE-TIPAGSFAN 259
G K+L L+L N I +QL L L++ N + IP N
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP--QGGN 289
Query: 260 LQSLEKLFLYSNN 272
LQ + +N
Sbjct: 290 LQRFDVSAYANNK 302
Score = 36.3 bits (82), Expect = 0.005
Identities = 39/259 (15%), Positives = 72/259 (27%), Gaps = 6/259 (2%)
Query: 90 ISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLIS-LEELDL 148
++ ++LS ++L + +PS+ L + + P ++ L L +
Sbjct: 52 VNNLDLSGLNLPKPY--PIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
Query: 149 SQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGL 208
+ ++ S + +L L N ++ P L L ++ NR+S P
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Query: 209 FNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL 268
+ F L + + A +
Sbjct: 169 YGSFSKLFTSMTISRN-RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227
Query: 269 YSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDS 328
+ N G NL L L NN + + + L L + N L
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-IPQ 286
Query: 329 LSLLPNLITLKLAKNPWHC 347
L A N C
Sbjct: 287 GGNLQRFDVSAYANNKCLC 305
Score = 34.7 bits (78), Expect = 0.014
Identities = 40/233 (17%), Positives = 69/233 (29%), Gaps = 6/233 (2%)
Query: 115 GAIRLTVVQLSYNAIE---SLPANVFHDLISLEELDLSQNV-LTSIQYGTFSGMYSLKRL 170
R+ + LS + +P+++ + L L L + L + + L L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 171 KLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNG 230
+ ++ P +K L L N LS P + +L + N IS
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 231 DEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTAL 290
D + + L S N+ E A G T
Sbjct: 167 DSYGSFSKLFTSMTISRN-RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 291 FLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
D +L L L +N++ L+ L L +L ++ N
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Score = 34.0 bits (76), Expect = 0.024
Identities = 45/265 (16%), Positives = 84/265 (31%), Gaps = 11/265 (4%)
Query: 63 DAFTGLYKLTELKLRKNHLS---ELPGKLFISTINLSTMDLS--QNLIKTLPSTFFKGAI 117
D T Y++ L L +L +P L L+ + + NL+ +P K
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKL-T 101
Query: 118 RLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRI 177
+L + +++ + + + +L LD S N L+ + S + +L + NRI
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 178 N-QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQL 236
+ +P K +++ NRL+ P F +
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG--DASVLFGS 219
Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNL 296
+ G ++L L L +N I L L +L ++ N
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 297 LRYLDTKAFEPMLHLKKLQLDSNKL 321
L + +NK
Sbjct: 280 LCGE-IPQGGNLQRFDVSAYANNKC 303
Score = 32.0 bits (71), Expect = 0.099
Identities = 11/103 (10%), Positives = 24/103 (23%), Gaps = 1/103 (0%)
Query: 1 WIKSDKEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTL 60
+ + K + + ++ +DL N++
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259
Query: 61 SKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN 103
T L L L + N+L + + N
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ-RFDVSAYANN 301
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 37.3 bits (85), Expect = 0.001
Identities = 33/173 (19%), Positives = 63/173 (36%), Gaps = 14/173 (8%)
Query: 118 RLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRI 177
++T +Q I+S+ L +L +++ S N + + LK L + +
Sbjct: 41 QVTTLQADRLGIKSIDG--VEYLNNLTQINFSNN--------QLTDITPLKNLTKLVDIL 90
Query: 178 NQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLT 237
+ + L + + + S LT
Sbjct: 91 MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 150
Query: 238 SLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTAL 290
SL++L+ N + + ANL +LE+L + SN + ++ A LTNL +L
Sbjct: 151 SLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDISV--LAKLTNLESL 199
Score = 28.1 bits (61), Expect = 1.3
Identities = 31/176 (17%), Positives = 56/176 (31%), Gaps = 14/176 (7%)
Query: 139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRN 198
DL + L + + SI G+ L L + NQ D+ L L+
Sbjct: 38 DLDQVTTLQADRLGIKSI-----DGVEYLNNLTQINFSNNQ-----LTDITPLKNLTKLV 87
Query: 199 NRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA 258
+ L ++ D L + + +
Sbjct: 88 DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALS 147
Query: 259 NLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKL 314
L SL++L SN + +L A LT L L +++N + + + +L+ L
Sbjct: 148 GLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS--VLAKLTNLESL 199
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 38.0 bits (86), Expect = 0.002
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 13/98 (13%)
Query: 187 DLKYLDFLSLRNNRLSFIR-PGLFNYFKHLTFLELSENWISSLN----GDEFSQLTSLKE 241
D++ LD ++ LS R L + + L + ++ +L E
Sbjct: 3 DIQSLD---IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59
Query: 242 LHLGQNYI-----ETIPAGSFANLQSLEKLFLYSNNIQ 274
L+L N + + G ++KL L + +
Sbjct: 60 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97
Score = 36.9 bits (83), Expect = 0.004
Identities = 16/140 (11%), Positives = 33/140 (23%), Gaps = 5/140 (3%)
Query: 238 SLKELHLGQNYI-ETIPAGSFANLQSLEKLFLYSNNIQELHAGTFA----GLTNLTALFL 292
++ L + + + A LQ + + L + E + L L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 293 NNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAIL 352
+N L + L ++ LQ TL+ +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 353 YMARWLRANRRKVWDSKPTC 372
+ +
Sbjct: 123 LLGDAGLQLLCEGLLDPQCR 142
Score = 36.9 bits (83), Expect = 0.004
Identities = 12/92 (13%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 92 TINLSTMDLSQNLIKTLP-STFFKGAIRLTVVQLSYNAIESLP----ANVFHDLISLEEL 146
++++ ++D+ + + + VV+L + ++ +L EL
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 147 DLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
+L N L + K+Q +
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92
Score = 36.5 bits (82), Expect = 0.006
Identities = 23/104 (22%), Positives = 32/104 (30%), Gaps = 15/104 (14%)
Query: 206 PGLFNYFKHLTFLELSENWISSLN----GDEFSQLTSLKELHLGQNYIETIPAGSFA--- 258
GL L L L++ +S + SL+EL L N +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 259 --NLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYL 300
LE+L LY E L AL + LR +
Sbjct: 422 RQPGCLLEQLVLYDIYWSE------EMEDRLQALEKDKPSLRVI 459
Score = 35.3 bits (79), Expect = 0.012
Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 24/112 (21%)
Query: 45 VDIRVIDLGINQLSTLS-KDAFTGLYKLTELKLRKNHLSELPGKLFISTI----NLSTMD 99
+DI+ +D+ +LS + L + ++L L+E K S + L+ ++
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN 151
L N +L + + + +++L L
Sbjct: 62 LRSN-------------------ELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
Score = 34.2 bits (76), Expect = 0.025
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 10/89 (11%)
Query: 166 SLKRLKLQSNRINQLP-PGIFDDLKYLDFLSLRNNRLSFIR----PGLFNYFKHLTFLEL 220
++ L +Q ++ + L+ + L + L+ R L L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 221 SENWISSLNGDEFSQL-----TSLKELHL 244
N + + Q +++L L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSL 91
Score = 31.1 bits (68), Expect = 0.22
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 13/97 (13%)
Query: 255 GSFANLQSLEKLFLYSNNIQELHAGTFA----GLTNLTALFLNNNLLRYLDTKAF----- 305
G L L+L ++ + + A +L L L+NN L
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422
Query: 306 EPMLHLKKLQLDSNKLQYLATDSLSLL----PNLITL 338
+P L++L L D L L P+L +
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
Score = 30.3 bits (66), Expect = 0.41
Identities = 15/114 (13%), Positives = 25/114 (21%), Gaps = 9/114 (7%)
Query: 1 WIKSDKEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTL 60
S + E +RV+ L +S
Sbjct: 325 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 384
Query: 61 S----KDAFTGLYKLTELKLRKNHLSELPGKLFISTI-----NLSTMDLSQNLI 105
S + L EL L N L + + ++ L + L
Sbjct: 385 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 438
Score = 29.9 bits (65), Expect = 0.50
Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 15/102 (14%)
Query: 112 FFKGAIRLTVVQLSYNAIESLP----ANVFHDLISLEELDLSQNVLT-----SIQYGTFS 162
+ L V+ L+ + A SL ELDLS N L +
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423
Query: 163 GMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
L++L L ++ + L L L I
Sbjct: 424 PGCLLEQLVLYDIYWSE------EMEDRLQALEKDKPSLRVI 459
Score = 29.6 bits (64), Expect = 0.81
Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 5/91 (5%)
Query: 117 IRLTVVQLSYNAIESLP-ANVFHDLISLEELDLSQNVLTSIQYGTFSGMY----SLKRLK 171
+ + + + + A + L + + L LT + S +L L
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202
L+SN + + ++ L
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 35.2 bits (79), Expect = 0.010
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 5/100 (5%)
Query: 213 KHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA----NLQSLEKLFL 268
K L ++ S+ + S+KE+ L N I T A + + + LE
Sbjct: 8 KSLKLDAITTEDEKSV-FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66
Query: 269 YSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPM 308
+ L L L L +
Sbjct: 67 SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 106
Score = 32.9 bits (73), Expect = 0.057
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 221 SENWISSLNGDEFSQLTSLKELHLGQNYIE-----TIPAGSFANLQSLEKLFLYSNNIQE 275
+ + ++ + L+ L L N IE T+ + L L L N E
Sbjct: 257 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316
Query: 276 L 276
Sbjct: 317 E 317
Score = 31.4 bits (69), Expect = 0.16
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 137 FHDLISLEELDLSQNVLT-----SIQYGTFSGMYSLKRLKLQSNRINQLPPGI 184
+ I L+ L L N + +++ M L L+L NR ++ +
Sbjct: 269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVV 321
Score = 29.8 bits (65), Expect = 0.54
Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFS----GMYSLKRLKLQS 174
L + ++ +S+ A + S++E+ LS N + + S L+ +
Sbjct: 10 LKLDAITTEDEKSVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 175 NRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKH 214
++ I + L+ L L+ +L +R +
Sbjct: 69 IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 108
Score = 29.8 bits (65), Expect = 0.59
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 156 IQYGTFSGMYSLKRLKLQSNRIN-----QLPPGIFDDLKYLDFLSLRNNRLS 202
+ + L+ L+LQ N I L I + + L FL L NR S
Sbjct: 264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315
Score = 28.7 bits (62), Expect = 1.1
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 185 FDDLKYLDFLSLRNNRLS-----FIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSL 239
+ L L L+ N + ++ + L FLEL+ N S D ++ +
Sbjct: 269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE-DDVVDEIREV 327
Query: 240 KEL 242
Sbjct: 328 FST 330
Score = 28.7 bits (62), Expect = 1.3
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 256 SFANLQSLEKLFLYSNNI-----QELHAGTFAGLTNLTALFLNNNLL 297
S L+ L L N I + L + +L L LN N
Sbjct: 268 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314
Score = 28.3 bits (61), Expect = 1.9
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 118 RLTVVQLSYNAIE-----SLPANVFHDLISLEELDLSQNVLTS 155
L ++L YN IE +L + + L L+L+ N +
Sbjct: 274 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316
Score = 27.2 bits (58), Expect = 3.6
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 9/64 (14%)
Query: 209 FNYFKHLTFLELSENWIS-----SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSL 263
L L L N I +L ++ L L L N + +
Sbjct: 269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED----DVVDEI 324
Query: 264 EKLF 267
++F
Sbjct: 325 REVF 328
Score = 26.8 bits (57), Expect = 5.6
Identities = 8/59 (13%), Positives = 20/59 (33%)
Query: 92 TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQ 150
T+ L ++ + ++TL + + L ++L+ N V +
Sbjct: 277 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGE 335
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 34.7 bits (78), Expect = 0.012
Identities = 28/176 (15%), Positives = 49/176 (27%), Gaps = 5/176 (2%)
Query: 127 NAIESLPANVFHDLISLEELDLSQNVLTSIQY-GTFSGMYSLKRLKLQSNRINQLPPGIF 185
+AI E+++L + + T S + + K L L +N I ++
Sbjct: 9 DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--L 66
Query: 186 DDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLG 245
++ L LSL N + I + + +
Sbjct: 67 SGMENLRILSLGRNLIKKIEN--LDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSN 124
Query: 246 QNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLD 301
A L LE L L N + + A + L+ LD
Sbjct: 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
Score = 33.9 bits (76), Expect = 0.019
Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 7/177 (3%)
Query: 102 QNLIKTLPSTFFKGAIRLTVVQLSYN--AIESLPANVFHDLISLEELDLSQNVLTSIQYG 159
++ I+ A V+L IE + A L + + L LS N + I
Sbjct: 8 KDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS-- 64
Query: 160 TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLE 219
+ SGM +L+ L R D + + G+
Sbjct: 65 SLSGMENLRI--LSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM 122
Query: 220 LSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
+ + D+ + L L++L L N + + A + ++ N+++L
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179
>d1ciya2 b.77.2.1 (A:256-461) delta-Endotoxin (insectocide), middle
domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Length = 206
Score = 26.5 bits (58), Expect = 5.2
Identities = 18/119 (15%), Positives = 29/119 (24%), Gaps = 8/119 (6%)
Query: 181 PPGIFDDLKYLDFLSLRNNRLSFIR-PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSL 239
P D + IR P L + +T + +G Q+T+
Sbjct: 16 PVLENFDGSFRGMAQRIEQ---NIRQPHLMDILNSITIYTDVHRGFNYWSG---HQITAS 69
Query: 240 KELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLR 298
G G+ N + L I + L + N L
Sbjct: 70 PVGFSGPE-FAFPLFGNAGNAAPPVLVSLTGLGIFRTLSSPLYRRIILGSGPNNQELFV 127
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 25.8 bits (55), Expect = 8.5
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 3/100 (3%)
Query: 97 TMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI 156
T+DL+ + P + + + + P ++ +DLS +V+
Sbjct: 4 TLDLTGKNL--HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61
Query: 157 QYGTF-SGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLS 195
S L+ L L+ R++ L L+
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.415
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,488,247
Number of extensions: 68731
Number of successful extensions: 517
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 130
Length of query: 404
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 317
Effective length of database: 1,213,086
Effective search space: 384548262
Effective search space used: 384548262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.3 bits)