BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12294
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P31009|RS2_DROME 40S ribosomal protein S2 OS=Drosophila melanogaster GN=RpS2 PE=1
SV=2
Length = 267
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 61/88 (69%), Gaps = 7/88 (7%)
Query: 7 FWGHLMVTSGILFCQHKVLGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIED 66
+WG+ + + C+ VTGKCGSV VRLIPAPRGTGIV APVPKKLL MAGIED
Sbjct: 152 YWGNKIGKPHTVPCK-------VTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIED 204
Query: 67 CYTSARGSTGTLGNFGECNTQHETSSYT 94
CYTSARGSTGTLGNF + +Y
Sbjct: 205 CYTSARGSTGTLGNFAKATYAAIAKTYA 232
>sp|P15880|RS2_HUMAN 40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2
Length = 293
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 67/107 (62%), Gaps = 9/107 (8%)
Query: 7 FWGHLMVTSGILFCQHKVLGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIED 66
+WG+ + + C+ VTG+CGSV VRLIPAPRGTGIV APVPKKLL MAGI+D
Sbjct: 169 YWGNKIGKPHTVPCK-------VTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDD 221
Query: 67 CYTSARGSTGTLGNFGEC--NTQHETSSYTETQCMQVLVSSHFPISE 111
CYTSARG T TLGNF + + +T SY + V + P E
Sbjct: 222 CYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQE 268
>sp|P27952|RS2_RAT 40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1
Length = 293
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 67/107 (62%), Gaps = 9/107 (8%)
Query: 7 FWGHLMVTSGILFCQHKVLGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIED 66
+WG+ + + C+ VTG+CGSV VRLIPAPRGTGIV APVPKKLL MAGI+D
Sbjct: 169 YWGNKIGKPHTVPCK-------VTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDD 221
Query: 67 CYTSARGSTGTLGNFGEC--NTQHETSSYTETQCMQVLVSSHFPISE 111
CYTSARG T TLGNF + + +T SY + V + P E
Sbjct: 222 CYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQE 268
>sp|P25444|RS2_MOUSE 40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3
Length = 293
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 67/107 (62%), Gaps = 9/107 (8%)
Query: 7 FWGHLMVTSGILFCQHKVLGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIED 66
+WG+ + + C+ VTG+CGSV VRLIPAPRGTGIV APVPKKLL MAGI+D
Sbjct: 169 YWGNKIGKPHTVPCK-------VTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDD 221
Query: 67 CYTSARGSTGTLGNFGEC--NTQHETSSYTETQCMQVLVSSHFPISE 111
CYTSARG T TLGNF + + +T SY + V + P E
Sbjct: 222 CYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQE 268
>sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1
Length = 277
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 71/114 (62%), Gaps = 9/114 (7%)
Query: 7 FWGHLMVTSGILFCQHKVLGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIED 66
+WG+ + + C+ VTG+CGSV VRLIPAPRGTGIV APVPKKLL MAGI+D
Sbjct: 154 YWGNKIGKPHTVPCK-------VTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDD 206
Query: 67 CYTSARGSTGTLGNFGEC--NTQHETSSYTETQCMQVLVSSHFPISESLNTISE 118
CYTSARG T TLGNF + + +T SY + V + P E + +++
Sbjct: 207 CYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLAK 260
>sp|O18789|RS2_BOVIN 40S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=2 SV=2
Length = 293
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 67/107 (62%), Gaps = 9/107 (8%)
Query: 7 FWGHLMVTSGILFCQHKVLGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIED 66
+WG+ + + C+ VTG+CGSV VRLIPAPRGTGIV APVPKKLL MAGI+D
Sbjct: 169 YWGNKIGKPHTVPCK-------VTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDD 221
Query: 67 CYTSARGSTGTLGNFGEC--NTQHETSSYTETQCMQVLVSSHFPISE 111
CYTSARG T TLGNF + + +T SY + V + P E
Sbjct: 222 CYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQE 268
>sp|P51403|RS2_CAEEL 40S ribosomal protein S2 OS=Caenorhabditis elegans GN=rps-2 PE=3
SV=1
Length = 272
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 60/88 (68%), Gaps = 7/88 (7%)
Query: 7 FWGHLMVTSGILFCQHKVLGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIED 66
+WG+ + + C+ VTGKC SV VRLIPAPRGTGIV APVPKKLL MAGIED
Sbjct: 165 YWGNKIGLPHTVPCK-------VTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIED 217
Query: 67 CYTSARGSTGTLGNFGECNTQHETSSYT 94
CYT+A+GST TLGNF + +Y+
Sbjct: 218 CYTAAKGSTATLGNFAKATYAALQRTYS 245
>sp|P46791|RS2_CRIGR 40S ribosomal protein S2 (Fragment) OS=Cricetulus griseus GN=RPS2
PE=2 SV=1
Length = 202
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 61/88 (69%), Gaps = 7/88 (7%)
Query: 7 FWGHLMVTSGILFCQHKVLGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIED 66
+WG+ + + C+ VTG+CGSV VRLIPAPRGTGIV APVPKKLL MAGI+D
Sbjct: 109 YWGNKIGKPHTVPCK-------VTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDD 161
Query: 67 CYTSARGSTGTLGNFGECNTQHETSSYT 94
CYTSARG T TLGNF + + +Y+
Sbjct: 162 CYTSARGCTATLGNFAKATFDAISKTYS 189
>sp|P49154|RS2_URECA 40S ribosomal protein S2 OS=Urechis caupo GN=RPS2 PE=2 SV=1
Length = 278
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 56/75 (74%), Gaps = 7/75 (9%)
Query: 7 FWGHLMVTSGILFCQHKVLGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIED 66
+WG+ + + C+ VTGKCGSV VRLIPAPRGTGIV APVPKKLL MAGI+D
Sbjct: 155 YWGNKIGKPHTVPCK-------VTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDD 207
Query: 67 CYTSARGSTGTLGNF 81
CYTSARG T TLGNF
Sbjct: 208 CYTSARGQTATLGNF 222
>sp|O74892|RS2_SCHPO 40S ribosomal protein S2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rps2 PE=1 SV=1
Length = 253
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 46/53 (86%)
Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNF 81
V+GKCGSV VRL+PAPRG G+V APV K+ LQ+AGIEDCYT +RGST TLGNF
Sbjct: 157 VSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNF 209
>sp|Q93VB8|RS22_ARATH 40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2
SV=1
Length = 284
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 55/75 (73%), Gaps = 7/75 (9%)
Query: 7 FWGHLMVTSGILFCQHKVLGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIED 66
+WG+ + + C+ VTGKCGSV VR++PAPRG+GIV A VPKK+LQ AGI+D
Sbjct: 162 YWGNKIGKPHTVPCK-------VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDD 214
Query: 67 CYTSARGSTGTLGNF 81
+TS+RGST TLGNF
Sbjct: 215 VFTSSRGSTKTLGNF 229
>sp|Q8L8Y0|RS21_ARATH 40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2
SV=2
Length = 284
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 55/75 (73%), Gaps = 7/75 (9%)
Query: 7 FWGHLMVTSGILFCQHKVLGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIED 66
+WG+ + + C+ VTGKCGSV VR++PAPRG+GIV A VPKK+LQ AGI+D
Sbjct: 162 YWGNKIGKPHTVPCK-------VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDD 214
Query: 67 CYTSARGSTGTLGNF 81
+TS+RGST TLGNF
Sbjct: 215 VFTSSRGSTKTLGNF 229
>sp|P49688|RS23_ARATH 40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1
SV=2
Length = 285
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 55/75 (73%), Gaps = 7/75 (9%)
Query: 7 FWGHLMVTSGILFCQHKVLGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIED 66
+WG+ + + C+ VTGKCGSV VR++PAPRG+GIV A VPKK+LQ AGI+D
Sbjct: 163 YWGNKIGKPHTVPCK-------VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDD 215
Query: 67 CYTSARGSTGTLGNF 81
+TS+RGST TLGNF
Sbjct: 216 VFTSSRGSTKTLGNF 230
>sp|P27685|RS2_DICDI 40S ribosomal protein S2 OS=Dictyostelium discoideum GN=rps2 PE=1
SV=1
Length = 265
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/53 (77%), Positives = 46/53 (86%)
Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNF 81
VTGKCGSV VRL+PAPRGTGIV A VPKKLLQ AG++D YTS+RG T T+GNF
Sbjct: 171 VTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKTRTMGNF 223
>sp|Q9SCM3|RS24_ARATH 40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2
SV=1
Length = 276
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 55/75 (73%), Gaps = 7/75 (9%)
Query: 7 FWGHLMVTSGILFCQHKVLGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIED 66
+WG+ + + C+ VTGKCGSV VR++PAPRG+GIV A VPKK+LQ AGI+D
Sbjct: 154 YWGNKIGKPHTVPCK-------VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDD 206
Query: 67 CYTSARGSTGTLGNF 81
+TS+RGST TLGNF
Sbjct: 207 VFTSSRGSTKTLGNF 221
>sp|O43992|RS2_LEIAM 40S ribosomal protein S2 OS=Leishmania amazonensis PE=3 SV=1
Length = 265
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 7/75 (9%)
Query: 7 FWGHLMVTSGILFCQHKVLGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIED 66
+WG+ + + + + VTGKCGSV VRL+PAPRGTGIV APVPKK+L+ AG+ED
Sbjct: 155 YWGNKI-------GEPHTIPMKVTGKCGSVAVRLVPAPRGTGIVAAPVPKKILEFAGVED 207
Query: 67 CYTSARGSTGTLGNF 81
YTS+RG T T GN
Sbjct: 208 VYTSSRGKTRTHGNL 222
>sp|P25443|RS2_YEAST 40S ribosomal protein S2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS2 PE=1 SV=3
Length = 254
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 44/65 (67%)
Query: 16 GILFCQHKVLGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGST 75
G Q L TGKCGSV VRLIPAPRG+GIV +P KKLLQ+AG+ED YT + G T
Sbjct: 145 GTNLGQPHSLATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKT 204
Query: 76 GTLGN 80
TL N
Sbjct: 205 RTLEN 209
>sp|A3MU88|RS5_PYRCJ 30S ribosomal protein S5 OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=rps5 PE=3 SV=1
Length = 202
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%)
Query: 27 LIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFG 82
+V+GK GSV+V LIPAP+G G+V V K +L++AGI+D +T RG T T NF
Sbjct: 132 FVVSGKSGSVEVTLIPAPKGVGLVAGDVAKVVLRLAGIKDVWTKTRGDTRTTLNFA 187
>sp|Q8ZXN9|RS5_PYRAE 30S ribosomal protein S5 OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=rps5
PE=3 SV=1
Length = 218
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 27 LIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFG 82
+V GK GSV++ LIPAP+G G+V V K +L++AGI+D +T RG T T NF
Sbjct: 148 FVVRGKSGSVEITLIPAPKGVGLVAGDVAKAVLRLAGIKDVWTKTRGDTRTTLNFA 203
>sp|A1RU37|RS5_PYRIL 30S ribosomal protein S5 OS=Pyrobaculum islandicum (strain DSM 4184
/ JCM 9189) GN=rps5 PE=3 SV=1
Length = 202
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 27 LIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFG 82
+V GK GSV+V LIPAP+G G+V V K +L++AGI+D +T RG T T NF
Sbjct: 132 FVVRGKSGSVEVTLIPAPKGVGLVAGDVAKVVLRLAGIKDVWTQTRGDTRTTLNFA 187
>sp|A4WHQ8|RS5_PYRAR 30S ribosomal protein S5 OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=rps5 PE=3 SV=2
Length = 202
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 27 LIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFG 82
+V GK GSV+V LIPAP+G G+V V K +L++AG++D +T RG T T NF
Sbjct: 132 FVVKGKSGSVEVTLIPAPKGVGLVAGDVAKAVLRLAGVKDVWTHTRGDTRTTLNFA 187
>sp|Q975K0|RS5_SULTO 30S ribosomal protein S5 OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=rps5 PE=3 SV=1
Length = 214
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%)
Query: 25 LGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNF 81
L V GK GSV+V L+PAP+GTG+V P K LL AGI+D ++ RGST T NF
Sbjct: 134 LPFKVYGKAGSVEVLLMPAPKGTGLVVGPALKTLLTYAGIKDAWSLTRGSTYTTENF 190
>sp|O59439|RS5_PYRHO 30S ribosomal protein S5 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps5 PE=3 SV=1
Length = 236
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGEC--NT 86
V GK GSV+VRLIP PRG G+V V KK+L++AGI+D ++ G T T NF + N
Sbjct: 145 VEGKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTFGETRTTVNFAKAVFNA 204
Query: 87 QHETSSYTETQCM----QVLVSSHFPISESL 113
+ T+ T M ++V P S +L
Sbjct: 205 LYNTNRVVVTPEMIERYGIVVGRAMPTSFTL 235
>sp|A0B9V0|RS5_METTP 30S ribosomal protein S5 OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rps5 PE=3 SV=1
Length = 203
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%)
Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGEC 84
V+G GSV++ L+PAPRG G+ V KK+++MAGI+D +T GST T NF +
Sbjct: 135 VSGSSGSVRIYLMPAPRGLGLAAGDVAKKVMEMAGIKDVWTRTEGSTRTTLNFAKA 190
>sp|O05641|RS5_SULAC 30S ribosomal protein S5 OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rps5 PE=3 SV=1
Length = 214
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 25 LGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNF 81
L IV+GK GSV+V L+PAP+GTG+V V K L +AG++D ++ +GST T NF
Sbjct: 134 LPFIVSGKAGSVEVTLLPAPKGTGLVVGSVLKTFLSLAGLKDVWSRTKGSTYTHENF 190
>sp|P26815|RS5_HALMA 30S ribosomal protein S5 OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rps5 PE=3
SV=1
Length = 212
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 25 LGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGEC 84
+ L GK GSV+V L PAPRG G+ G +K+L++AGIED +T + G+T T NF +
Sbjct: 128 VALRTEGKAGSVEVELQPAPRGLGLAGGETVRKVLELAGIEDIWTRSSGNTRTTVNFAKA 187
>sp|A8AC00|RS5_IGNH4 30S ribosomal protein S5 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=rps5 PE=3 SV=1
Length = 211
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%)
Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGECNTQH 88
V GK GSV+V L PAPRGTG+V V K +L+ AGI+D +T G T T NF +
Sbjct: 135 VRGKSGSVEVILKPAPRGTGLVAGDVAKAVLRYAGIKDVWTHTEGETRTTHNFAKATFNA 194
Query: 89 ETSSY 93
+Y
Sbjct: 195 LKQTY 199
>sp|A3CT17|RS5_METMJ 30S ribosomal protein S5 OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=rps5 PE=3 SV=1
Length = 205
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGEC 84
VTGK GSV+V L PAP+G G+V +PKK+L +AGI+D + RG T T N+ +
Sbjct: 133 VTGKAGSVKVTLKPAPQGIGLVTGDIPKKVLMLAGIKDVWAFNRGQTRTTINYAKA 188
>sp|Q9HPB4|RS5_HALSA 30S ribosomal protein S5 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=rps5 PE=3 SV=1
Length = 212
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 25 LGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGEC 84
+ L TGK GSV V L+PAPRG G+ G + +L++AGI+D +T + G T T NF +
Sbjct: 128 VALKSTGKAGSVDVELMPAPRGLGLAGGETVQHVLELAGIDDVWTRSSGKTRTTVNFAKA 187
Query: 85 --NTQHETSS 92
N ETS
Sbjct: 188 TFNALRETSE 197
>sp|A6VH05|RS5_METM7 30S ribosomal protein S5 OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rps5 PE=3 SV=1
Length = 229
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 35/54 (64%)
Query: 31 GKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGEC 84
G CGSV+V L+PAPRG G+V V K +L +AGI+D +T G T T NF E
Sbjct: 147 GACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGIKDAWTKTFGDTRTTYNFAEA 200
>sp|A9A9P4|RS5_METM6 30S ribosomal protein S5 OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rps5 PE=3 SV=1
Length = 229
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 35/54 (64%)
Query: 31 GKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGEC 84
G CGSV+V L+PAPRG G+V V K +L +AGI+D +T G T T NF E
Sbjct: 147 GACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGIKDAWTKTFGDTRTTYNFAEA 200
>sp|Q9V1V5|RS5_PYRAB 30S ribosomal protein S5 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rps5 PE=3 SV=1
Length = 236
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGEC--NT 86
V GK GSV+V+LIP PRG G+V V KK+L++AGI+D ++ G T T NF + N
Sbjct: 145 VEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTTVNFAKAVFNA 204
Query: 87 QHETSSYTETQCM----QVLVSSHFPISESL 113
+ T+ T M ++V P S +L
Sbjct: 205 LYNTNKVVVTPEMIERYGIVVGRAMPASFTL 235
>sp|A7I5Q9|RS5_METB6 30S ribosomal protein S5 OS=Methanoregula boonei (strain 6A8)
GN=rps5 PE=3 SV=1
Length = 205
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGEC--NT 86
V G GSV+V L PAP+G G+V + KK+L++AGI+D +T ARG T T NF + N
Sbjct: 133 VEGTAGSVRVTLKPAPQGIGLVTGDISKKVLELAGIKDAWTFARGQTRTTINFAKATFNA 192
Query: 87 QHETS 91
ET+
Sbjct: 193 LKETN 197
>sp|Q8U017|RS5_PYRFU 30S ribosomal protein S5 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rps5 PE=1 SV=1
Length = 236
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGEC 84
V GK GSV+VRLIP PRG G+V V KK+L++AG++D ++ G T T NF +
Sbjct: 145 VEGKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAGVQDVWSQTFGETRTTVNFAKA 200
>sp|Q6LXD3|RS5_METMP 30S ribosomal protein S5 OS=Methanococcus maripaludis (strain S2 /
LL) GN=rps5 PE=3 SV=1
Length = 225
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 31 GKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGEC 84
G CGSV+V L+PAPRG G+V V K +L +AG++D +T G T T NF E
Sbjct: 143 GACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGVKDAWTKTFGDTRTTYNFAEA 196
>sp|Q9UX87|RS5_SULSO 30S ribosomal protein S5 OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rps5 PE=3 SV=2
Length = 214
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 38/57 (66%)
Query: 25 LGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNF 81
L V GK GSV+V L+PAP+GTG+V V K LL AGI+D +++ +G T T NF
Sbjct: 134 LPFKVVGKAGSVEVDLLPAPKGTGLVVGSVLKTLLTYAGIKDAWSTTKGETRTTENF 190
>sp|A4FWA1|RS5_METM5 30S ribosomal protein S5 OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rps5 PE=3 SV=1
Length = 229
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 31 GKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGEC 84
G CGSV+V L+PAPRG G+V V K +L +AG++D +T G T T NF E
Sbjct: 147 GACGSVKVELLPAPRGVGLVAGNVAKAVLGLAGVKDAWTKTFGDTRTTFNFAEA 200
>sp|C3NH89|RS5_SULIN 30S ribosomal protein S5 OS=Sulfolobus islandicus (strain Y.N.15.51
/ Yellowstone #2) GN=rps5 PE=3 SV=1
Length = 214
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 37/57 (64%)
Query: 25 LGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNF 81
L V GK GSV+V L+PAP+GTG+V V K LL AGI D +++ +G T T NF
Sbjct: 134 LPFKVVGKAGSVEVNLLPAPKGTGLVVGSVLKTLLTYAGIRDAWSTTKGETRTTENF 190
>sp|Q3IMW8|RS5_NATPD 30S ribosomal protein S5 OS=Natronomonas pharaonis (strain DSM 2160
/ ATCC 35678) GN=rps5 PE=3 SV=1
Length = 211
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 30 TGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGECN---T 86
TGK GSV+V L PAPRG G+ AP + +L++AG+ED +T G+T T N +
Sbjct: 131 TGKAGSVEVELKPAPRGLGLAAAPTVRHVLELAGVEDAWTKCHGNTRTTLNLAKATYNAL 190
Query: 87 QHETSSYTETQCMQV 101
++ + S T QV
Sbjct: 191 RNASESRTPEHTRQV 205
>sp|A4YCY6|RS5_METS5 30S ribosomal protein S5 OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=rps5 PE=3 SV=1
Length = 214
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 38/57 (66%)
Query: 25 LGLIVTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNF 81
L +V+GK GS +V L PAP+GTG+V V K LL AGI+D ++ +RG T T NF
Sbjct: 134 LPFLVSGKSGSAEVVLRPAPKGTGLVAGGVLKTLLTYAGIKDVWSFSRGETRTTDNF 190
>sp|A1RWR6|RS5_THEPD 30S ribosomal protein S5 OS=Thermofilum pendens (strain Hrk 5)
GN=rps5 PE=3 SV=1
Length = 202
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGECNTQH 88
V GK GSV++ LIPAP+G G+V + V K +L++AGI+D ++ + G T T N + +
Sbjct: 130 VEGKAGSVKIELIPAPKGVGLVASDVAKTVLRLAGIKDVWSRSYGETRTTHNMAKAVYEA 189
Query: 89 ETSSY 93
+Y
Sbjct: 190 LKKTY 194
>sp|Q9YF95|RS5_AERPE 30S ribosomal protein S5 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps5 PE=3
SV=1
Length = 218
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 39/65 (60%)
Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGECNTQH 88
V GK GSV+V L PAP+GTG+V V K +L++AGI D +T +G T T NF
Sbjct: 139 VRGKSGSVEVILKPAPKGTGLVAGDVAKVVLRLAGISDVWTFTKGETRTSYNFARATYLA 198
Query: 89 ETSSY 93
++Y
Sbjct: 199 LRNTY 203
>sp|A6UWV8|RS5_META3 30S ribosomal protein S5 OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=rps5 PE=3 SV=1
Length = 221
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 31 GKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNF 81
G CGSV+V L+PAPRG G+V V K +L +AGI+D +T G T T NF
Sbjct: 140 GSCGSVKVELLPAPRGVGLVAGNVAKAVLGLAGIKDIWTKTFGDTRTTYNF 190
>sp|A2SPM2|RS5_METLZ 30S ribosomal protein S5 OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=rps5 PE=3 SV=1
Length = 205
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGEC--NT 86
VTGK GSV V L PAP+G G+V V KK+L +AGI+D + + G+T T NF + N
Sbjct: 133 VTGKAGSVAVTLKPAPKGIGLVTGDVGKKVLTLAGIQDVWVNTSGNTRTTLNFAKATYNA 192
Query: 87 QHETS 91
ET+
Sbjct: 193 LRETN 197
>sp|Q8TZA6|RS5_METKA 30S ribosomal protein S5 OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rps5 PE=3 SV=1
Length = 226
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 32/40 (80%)
Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCY 68
+TGKCGSV++ L PAPRGTG+V +K+L+MAGIED +
Sbjct: 135 ITGKCGSVRITLKPAPRGTGLVAGETAQKVLEMAGIEDVW 174
>sp|O28374|RS5_ARCFU 30S ribosomal protein S5 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rps5 PE=3 SV=1
Length = 198
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGEC 84
VTG GSV+V LIP P+G GIV V K+++++AG++D ++ +G T T NF +
Sbjct: 130 VTGTSGSVRVTLIPGPKGLGIVAGDVAKRVIELAGVKDVWSFTKGQTKTTVNFAKA 185
>sp|A3DNC7|RS5_STAMF 30S ribosomal protein S5 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rps5 PE=3 SV=1
Length = 214
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 38/65 (58%)
Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGECNTQH 88
V GK GSV V L PAP+GTG+V K +L+MAGI+D +T G T T NF +
Sbjct: 139 VQGKSGSVVVVLKPAPKGTGLVAGDTAKAVLRMAGIKDVWTETFGKTKTTLNFAKAVVNA 198
Query: 89 ETSSY 93
++Y
Sbjct: 199 LRNTY 203
>sp|Q46GB5|RS5_METBF 30S ribosomal protein S5 OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=rps5 PE=3 SV=1
Length = 208
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGEC 84
VTGK GSV V LIPAPRG GI K+L+ AGI+D +T G+T + NF +
Sbjct: 132 VTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTLNFAKA 187
>sp|Q8TRS7|RS5_METAC 30S ribosomal protein S5 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=rps5 PE=3 SV=1
Length = 209
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGEC 84
VTGK GSV V LIPAPRG GI K+L+ AGI+D +T G+T + NF +
Sbjct: 132 VTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTLNFAKA 187
>sp|Q8PV30|RS5_METMA 30S ribosomal protein S5 OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rps5 PE=3 SV=1
Length = 209
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTLGNFGEC 84
VTGK GSV V LIPAPRG GI K+L+ AGI+D +T G+T + NF +
Sbjct: 132 VTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTLNFAKA 187
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,271,209
Number of Sequences: 539616
Number of extensions: 1649996
Number of successful extensions: 4116
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 3454
Number of HSP's gapped (non-prelim): 705
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)