RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12294
         (123 letters)



>d2uube1 d.14.1.1 (E:74-154) Ribosomal protein S5, C-terminal
          domain {Thermus thermophilus [TaxId: 274]}
          Length = 81

 Score = 65.5 bits (160), Expect = 5e-16
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTL 78
          +  + G+ ++ L PA  GTG++   VP+ +L++AG+ D  T   GS   +
Sbjct: 7  IEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPI 56


>d1pkpa1 d.14.1.1 (A:78-148) Ribosomal protein S5, C-terminal
          domain {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 71

 Score = 64.0 bits (156), Expect = 2e-15
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTL 78
          V G  G+ ++ L PA  GTG++     + +L++AGI D  + + GS   +
Sbjct: 8  VIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI 57


>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal
          domain {Escherichia coli [TaxId: 562]}
          Length = 81

 Score = 64.0 bits (156), Expect = 2e-15
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 29 VTGKCGSVQVRLIPAPRGTGIVGAPVPKKLLQMAGIEDCYTSARGSTGTL 78
          V G     +V + PA  GTGI+     + +L++AG+ +    A GST  +
Sbjct: 7  VKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPI 56


>d2hrva_ b.47.1.4 (A:) 2A cysteine proteinase {Human rhinovirus 2
           [TaxId: 12130]}
          Length = 139

 Score = 27.7 bits (62), Expect = 0.23
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 16  GILFCQHKVLGLIVTGKCGSV 36
           G L C+H V+G++  G    V
Sbjct: 108 GKLLCKHGVIGIVTAGGDNHV 128


>d1p42a1 d.14.1.7 (A:2-127) UDP-3-O-[3-hydroxymyristoyl]
          N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus
          [TaxId: 63363]}
          Length = 120

 Score = 25.3 bits (55), Expect = 1.8
 Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 2/21 (9%)

Query: 30 TGKCGSVQVRLIPAPRGTGIV 50
          TG+    ++ + P   GTGI 
Sbjct: 19 TGE--YSKLIIHPEKEGTGIR 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 427,826
Number of extensions: 17171
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 5
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)