BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12296
(433 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQ 65
LG S+RGG E G+F+S++ +A+ GL +GD+I+RING+ I TH EV+ LI ++
Sbjct: 98 LGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTE 157
Query: 66 NIISLKVRSVGMIPTKER-DKSVTWKFVD 93
+S+KVR +G+IP K D+ +TW++VD
Sbjct: 158 KTVSIKVRHIGLIPVKSSPDEPLTWQYVD 186
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 116 PHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVS 175
P G LG + G ++ G+F+ A GL+ GD+I+ NG S T E ++
Sbjct: 95 PEG-LGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSIS-SCTHEEVIN 152
Query: 176 VMKSSCLLELLVHRGVGL 193
++++ + + V R +GL
Sbjct: 153 LIRTEKTVSIKV-RHIGL 169
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 50/77 (64%)
Query: 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH 63
G LGFS+RGG EH G+FVS VE S AER+GL +GD+I +NG +E T ++++
Sbjct: 22 GRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLT 81
Query: 64 SQNIISLKVRSVGMIPT 80
S + + + VR +G P+
Sbjct: 82 SSSRLHMMVRRMGSGPS 98
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVT 169
+ +E P G+LG + G + GIFV ++ A+ AGL GD+I NG+ T
Sbjct: 14 VRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLE-STT 72
Query: 170 FEHAVSVMKSSCLLELLVHR 189
AV V+ SS L ++V R
Sbjct: 73 MGSAVKVLTSSSRLHMMVRR 92
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 72.4 bits (176), Expect = 5e-13, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 47/73 (64%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQ 65
LGFSIRGG EH G++VS VEP S AE+ GL +GDQI+R+N + TH+E ++ +
Sbjct: 23 LGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGS 82
Query: 66 NIISLKVRSVGMI 78
+ L V S G I
Sbjct: 83 KKLVLSVYSAGRI 95
Score = 37.0 bits (84), Expect = 0.019, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 117 HGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSV 176
H LG I G + GI+V + +A+ GL+ GDQIL N + VT AV
Sbjct: 20 HEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLA-RVTHAEAVKA 78
Query: 177 MKSSCLLELLVH 188
+K S L L V+
Sbjct: 79 LKGSKKLVLSVY 90
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 71.6 bits (174), Expect = 8e-13, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 50/75 (66%)
Query: 5 TLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS 64
+LG +IRGG E+ G++++ V+P SEAE SGL +GDQI+ +NG + H E ++L+ S
Sbjct: 33 SLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS 92
Query: 65 QNIISLKVRSVGMIP 79
+ L V+ VG +P
Sbjct: 93 SRHLILTVKDVGRLP 107
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 120 LGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKS 179
LG I G ++ GI++ A+ +GLK GDQIL NG F ++ + AV ++KS
Sbjct: 34 LGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFL-NILHDEAVRLLKS 92
Query: 180 SCLLELLV 187
S L L V
Sbjct: 93 SRHLILTV 100
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQ 65
LGF+IRGG+ G+F+S V P S+A R+GL GDQ++ +N +D HS+ ++++ +
Sbjct: 29 LGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTA 88
Query: 66 NIISLKVR 73
IS++VR
Sbjct: 89 REISMRVR 96
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVT 169
+TL+ PP +LG I G + GIF+ A AGL+ GDQ+LA N V F D+
Sbjct: 19 VTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQ-DIE 77
Query: 170 FEHAVSVMKSSCLLELLVH 188
AV ++K++ + + V
Sbjct: 78 HSKAVEILKTAREISMRVR 96
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 120 LGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKS 179
LGC I GP KPGIF+ K ++ + GL+ GDQI+ NGV FS ++ + AV+V+KS
Sbjct: 29 LGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFS-NLDHKEAVNVLKS 87
Query: 180 SCLLELLVHRGVGLDLF 196
S L + + G +LF
Sbjct: 88 SRSLTISIVAAAGRELF 104
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQ 65
LG SI G G+F+S+V+P S + GL IGDQI+ +NG + H E + ++ S
Sbjct: 29 LGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS 88
Query: 66 NIISLKV 72
+++ +
Sbjct: 89 RSLTISI 95
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 120 LGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKS 179
LGC I GP KPGIF+ K ++ + GL+ GDQI+ NGV FS ++ + AV+V+KS
Sbjct: 15 LGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFS-NLDHKEAVNVLKS 73
Query: 180 SCLLELLVHRGVGLDLF 196
S L + + G +LF
Sbjct: 74 SRSLTISIVAAAGRELF 90
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQ 65
LG SI G G+F+S+V+P S + GL IGDQI+ +NG + H E + ++ S
Sbjct: 15 LGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS 74
Query: 66 NIISLKV 72
+++ +
Sbjct: 75 RSLTISI 81
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQLIHS 64
GFSIRGGRE+ ++V + A R+G + +GDQII ING D TH+ ++LI S
Sbjct: 24 FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS 83
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 120 LGCGICKGPQWKPGIFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMK 178
G I G ++K ++V + +D ++ ++ GDQI+ NG + + D+T A+ ++K
Sbjct: 24 FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEING-ESTRDMTHARAIELIK 82
Query: 179 SSC-LLELLVHRGVG 192
S + LL+ RG G
Sbjct: 83 SGGRRVRLLLKRGTG 97
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 35/168 (20%)
Query: 21 FVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQLIHSQNIISLKVRSVGMIP 79
+S +E S AER G+L IGD+++ ING P ED+T E QL+
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLL----------------- 81
Query: 80 TKERDKSVTWKFV-----DTNKSNLNQNERFPV-VPITLEVPPHGKLGCGICKGPQWKPG 133
RD S+T K D +S + + F V +P V +LG I KPG
Sbjct: 82 ---RDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSV----ELGITISSPSSRKPG 134
Query: 134 --IFVQFTKDACVAKDAG-LKCGDQILACNGVKFSPDVTFEHAVSVMK 178
+ + K VA G L+ GD++LA + ++ + E AV +++
Sbjct: 135 DPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLD-SCSMEDAVQILQ 181
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 51.6 bits (122), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAER-SGLLIGDQIIRINGFPIEDATHSEVLQLIHS 64
LG SI GG+EH + +S + P A+R GL +GD I+ +NG + D H E + ++
Sbjct: 41 LGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ 100
Query: 65 Q 65
Q
Sbjct: 101 Q 101
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAER-SGLLIGDQIIRINGFPIEDATHSEVLQLIHS 64
LG SI GG+EH + +S + P A+R GL +GD I+ +NG + D H E + ++
Sbjct: 16 LGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ 75
Query: 65 Q 65
Q
Sbjct: 76 Q 76
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAER-SGLLIGDQIIRINGFPIEDATHSEVLQLIHS 64
LG SI GG+EH + +S + P A+R GL +GD I+ +NG + D H E + ++
Sbjct: 23 LGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ 82
Query: 65 Q 65
Q
Sbjct: 83 Q 83
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLI 62
GFS+RGGRE+ ++V + AERSG + IGD+I+ ING ++ HS ++LI
Sbjct: 37 FGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELI 94
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAER-SGLLIGDQIIRINGFPIEDATHSEVLQLIH- 63
LGF+I GG+E + +++S V P A+R GL GDQ++ +NG +E H + ++L+
Sbjct: 18 LGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKA 77
Query: 64 SQNIISLKVRS 74
+Q + L VRS
Sbjct: 78 AQGSVKLVVRS 88
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 120 LGCGICKGPQWKPGIFVQFTKDACVA-KDAGLKCGDQILACNGVKFSPDVTFEHAVSVMK 178
LG I G + I++ VA + GLK GDQ+L+ NGV + E AV ++K
Sbjct: 18 LGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGE-QHEKAVELLK 76
Query: 179 SS-CLLELLVHRG 190
++ ++L+V G
Sbjct: 77 AAQGSVKLVVRSG 89
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human
Scrib1
Length = 97
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 4 GTLGFSIRGGREHT------TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSE 57
G LG SI GG+ T G+F+S V + A R+G+ +GD+++ +NG ++ A H E
Sbjct: 14 GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHE 73
Query: 58 VLQLIHSQNIISLKVRSVGMIPTKERDKSV 87
++ + +V M +ER+ SV
Sbjct: 74 AVEALRGAGT------AVQMRVWRERETSV 97
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 118 GKLGCGICKGPQWKP------GIFVQFTKDACVAKDAGLKCGDQILACNGV 162
G LG I G P GIF+ + A AG++ GD++L NGV
Sbjct: 14 GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGV 64
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERS-GLLIGDQIIRINGFPIEDATHSEVLQLI 62
G LG SI+GGRE+ + +S + P A++S L +GD I+ +NG + ATH + +Q +
Sbjct: 15 GGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQAL 74
>pdb|2EEI|A Chain A, Solution Structure Of Second Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 106
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
G+ GFS++ + GV+++++ P+ A R+G+L D +I +NG +EDA+H EV++ +
Sbjct: 18 GGSYGFSLKT-VQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKV 76
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 84/191 (43%), Gaps = 40/191 (20%)
Query: 3 NGTLGFSIRGGREH-----TTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHS 56
N LGFSI GG ++ +F++ + P A + G L + D I+ +N + + THS
Sbjct: 69 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 128
Query: 57 EVLQ-LIHSQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVP 115
++ L + +I+ L V + P E+ V+ I L
Sbjct: 129 AAVEALKEAGSIVRLYV--MRRKPPAEK-----------------------VMEIKLIKG 163
Query: 116 PHGKLGCGICKGP--QWKPG---IFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDVT 169
P G LG I G Q PG I+V + + KD L+ GD+ILA N V DV
Sbjct: 164 PKG-LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLE-DVM 221
Query: 170 FEHAVSVMKSS 180
E AV+ +K++
Sbjct: 222 HEDAVAALKNT 232
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 87/222 (39%), Gaps = 56/222 (25%)
Query: 6 LGFSIRGG--REHTTG---VFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSE-V 58
LGFSI GG +H G ++V+ + A + G L IGD+I+ +N +ED H + V
Sbjct: 167 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAV 226
Query: 59 LQLIHSQNIISLKVRS--------------------------------------VGMIPT 80
L ++ +++ LKV M PT
Sbjct: 227 AALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPT 286
Query: 81 KERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVPPHGKLGCGI-CKGPQWKPGIFVQFT 139
R S K +L E P P + V G G G G + GIF+ F
Sbjct: 287 SPRRYSPVAK-------DLLGEEDIPREPRRI-VIHRGSTGLGFNIVGGEDGEGIFISFI 338
Query: 140 KDACVAKDAG-LKCGDQILACNGVKFSPDVTFEHAVSVMKSS 180
A +G L+ GDQIL+ NGV + + E A +K++
Sbjct: 339 LAGGPADLSGELRKGDQILSVNGVDLR-NASHEQAAIALKNA 379
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 6 LGFSIRGGREHT------TGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEV 58
LGFSI GG+ T G+FVS + A R+G L +GD+++ ING + +A H
Sbjct: 20 LGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHA 79
Query: 59 LQLI--HSQNIISLKVRSVGMIPT 80
+ L+ S I L R G P+
Sbjct: 80 VSLLTAASPTIALLLEREAGSGPS 103
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 4 GTLGFSIRGGREHT------TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSE 57
G LG SI GG+ T G+F+S V + A R+G+ +GD+++ +NG ++ A H E
Sbjct: 26 GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHE 85
Query: 58 VLQLI 62
++ +
Sbjct: 86 AVEAL 90
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 118 GKLGCGICKGPQWKP------GIFVQFTKDACVAKDAGLKCGDQILACNGV 162
G LG I G P GIF+ + A AG++ GD++L NGV
Sbjct: 26 GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGV 76
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 83/191 (43%), Gaps = 40/191 (20%)
Query: 3 NGTLGFSIRGGREH-----TTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHS 56
N LGFSI GG ++ +F++ + P A + G L + D I+ +N + + THS
Sbjct: 15 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 74
Query: 57 EVLQ-LIHSQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVP 115
++ L + +I+ L V R K K V+ I L
Sbjct: 75 AAVEALKEAGSIVRLYVM---------RRKPPAEK----------------VMEIKLIKG 109
Query: 116 PHGKLGCGICKGP--QWKPG---IFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDVT 169
P G LG I G Q PG I+V + + KD L+ GD+ILA N V DV
Sbjct: 110 PKG-LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLE-DVM 167
Query: 170 FEHAVSVMKSS 180
E AV+ +K++
Sbjct: 168 HEDAVAALKNT 178
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 6 LGFSIRGG--REHTTG---VFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSE-V 58
LGFSI GG +H G ++V+ + A + G L IGD+I+ +N +ED H + V
Sbjct: 113 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAV 172
Query: 59 LQLIHSQNIISLKV 72
L ++ +++ LKV
Sbjct: 173 AALKNTYDVVYLKV 186
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 83/191 (43%), Gaps = 40/191 (20%)
Query: 3 NGTLGFSIRGGREH-----TTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHS 56
N LGFSI GG ++ +F++ + P A + G L + D I+ +N + + THS
Sbjct: 22 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 81
Query: 57 EVLQ-LIHSQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVP 115
++ L + +I+ L V R K K V+ I L
Sbjct: 82 AAVEALKEAGSIVRLYVM---------RRKPPAEK----------------VMEIKLIKG 116
Query: 116 PHGKLGCGICKGP--QWKPG---IFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDVT 169
P G LG I G Q PG I+V + + KD L+ GD+ILA N V DV
Sbjct: 117 PKG-LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLE-DVM 174
Query: 170 FEHAVSVMKSS 180
E AV+ +K++
Sbjct: 175 HEDAVAALKNT 185
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 6 LGFSIRGG--REHTTG---VFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSE-V 58
LGFSI GG +H G ++V+ + A + G L IGD+I+ +N +ED H + V
Sbjct: 120 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAV 179
Query: 59 LQLIHSQNIISLKV 72
L ++ +++ LKV
Sbjct: 180 AALKNTYDVVYLKV 193
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 83/191 (43%), Gaps = 40/191 (20%)
Query: 3 NGTLGFSIRGGREH-----TTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHS 56
N LGFSI GG ++ +F++ + P A + G L + D I+ +N + + THS
Sbjct: 12 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 71
Query: 57 EVLQ-LIHSQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVP 115
++ L + +I+ L V R K K V+ I L
Sbjct: 72 AAVEALKEAGSIVRLYVM---------RRKPPAEK----------------VMEIKLIKG 106
Query: 116 PHGKLGCGICKGP--QWKPG---IFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDVT 169
P G LG I G Q PG I+V + + KD L+ GD+ILA N V DV
Sbjct: 107 PKG-LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLE-DVM 164
Query: 170 FEHAVSVMKSS 180
E AV+ +K++
Sbjct: 165 HEDAVAALKNT 175
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 6 LGFSIRGG--REHTTG---VFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSE-V 58
LGFSI GG +H G ++V+ + A + G L IGD+I+ +N +ED H + V
Sbjct: 110 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAV 169
Query: 59 LQLIHSQNIISLKV 72
L ++ +++ LKV
Sbjct: 170 AALKNTYDVVYLKV 183
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERS-GLLIGDQIIRINGFPIEDATHSEVLQLI 62
G LG SI+GGRE+ + +S + A+++ L +GD I+ +NG + ATH E +Q +
Sbjct: 89 GGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQAL 148
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In
Complex With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERS-GLLIGDQIIRINGFPIEDATHSEVLQLI 62
G LG SI+GGRE+ + +S + A+++ L +GD I+ +NG + ATH E +Q +
Sbjct: 12 GGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQAL 71
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERS-GLLIGDQIIRINGFPIEDATHSEVLQLI 62
G LG SI+GGRE+ + +S + A+++ L +GD I+ +NG + ATH E +Q +
Sbjct: 16 GGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQAL 75
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERS-GLLIGDQIIRINGFPIEDATHSEVLQLI 62
G LG SI+GGRE+ + +S + A+++ L +GD I+ +NG + ATH E +Q +
Sbjct: 12 GGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQAL 71
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho
Guanine Nucleotide Exchange Factor 11
Length = 93
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQ 65
GF++ G R V V +V P A ++G+ GD+II++NG + +++H EV++LI S
Sbjct: 21 FGFTVSGDRI----VLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSG 76
Query: 66 NIISLKV 72
++L +
Sbjct: 77 AYVALTL 83
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS 64
GF + G + G ++ VEP S AE++GLL GD+++ +NG +E TH +V+ I +
Sbjct: 17 GFHLHG-EKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRA 73
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS 64
GF + G + G ++ VEP S AE++GLL GD+++ +NG +E TH +V+ I +
Sbjct: 17 GFHLHG-EKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRA 73
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS 64
GF + G + G ++ VEP S AE++GLL GD+++ +NG +E TH +V+ I +
Sbjct: 16 GFHLHG-EKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRA 72
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus
Pdz Domain-Containing Protein 1
Length = 114
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH-SQ 65
GF +R ++ T G + +E S AE++GLL GD+++RING ++ H++V++L+ S
Sbjct: 28 GFFLRIEKD-TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSG 86
Query: 66 NIISLKV 72
N ++L V
Sbjct: 87 NSVTLLV 93
>pdb|1V5Q|A Chain A, Solution Structure Of The Pdz Domain From Mouse
Glutamate Receptor Interacting Protein 1a-L (Grip1)
Homolog
Length = 122
Score = 45.1 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 21 FVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQLIHSQNIIS 69
+S +E S AER G+L IGD+++ ING P ED+T E QL+ +I S
Sbjct: 48 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITS 97
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS 64
GF + G + G ++ VEP S AE++GLL GD+++ +NG +E TH +V+ I +
Sbjct: 17 GFHLHG-EKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRA 73
>pdb|1P1E|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 101
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 21 FVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQLIHSQNIIS 69
+S +E S AER G+L IGD+++ ING P ED+T E QL+ +I S
Sbjct: 39 LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITS 88
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH-SQ 65
GF +R ++ T G + +E S AE++GLL GD+++RING ++ H++V++L+ S
Sbjct: 17 GFFLRIEKD-TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSG 75
Query: 66 NIISLKV 72
N ++L V
Sbjct: 76 NSVTLLV 82
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl
Receptor Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl
Receptor Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH-SQ 65
GF +R ++ T G + +E S AE++GLL GD+++RING ++ H++V++L+ S
Sbjct: 16 GFFLRIEKD-TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSG 74
Query: 66 NIISLKV 72
N ++L V
Sbjct: 75 NSVTLLV 81
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 20 VFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNIISLKVRS 74
VFV +V+ A R+G+ GD+II++NG + + H EV++LI S + ++L V+
Sbjct: 30 VFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHLEVVKLIKSGSYVALTVQG 84
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 134 IFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVH 188
+FVQ K+ A AG++ GD+I+ NG + E V ++KS + L V
Sbjct: 30 VFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHLE-VVKLIKSGSYVALTVQ 83
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 115 PPHGKLG---CGICKGPQWKPGIFVQFTKDACVA-KDAGLKCGDQILACNGVKFSPDVTF 170
PP G LG G+ + + GIFVQ ++ VA +D LK DQILA NG +T
Sbjct: 29 PPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITH 88
Query: 171 EHAVSVM-KSSCLLELLVHRG 190
+ A+S++ K+ ++L++ RG
Sbjct: 89 QQAISILQKAKDTVQLVIARG 109
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 7 GFSIRG--GREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS 64
GF + G GR G F+ VEP S AE + L GD+++ +NG +E TH +V+Q I +
Sbjct: 15 GFHLHGEKGRR---GQFIRRVEPGSPAEAAALRAGDRLVEVNGVNVEGETHHQVVQRIKA 71
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 3 NGTLGFSIRGGREHTT---GVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEV 58
+G+LG S+ GG + G++V + PK AE G + GD+++ +NG +E ATH +
Sbjct: 14 DGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 73
Query: 59 LQLIHSQNIISLKVRSVGMIP 79
++ + + + + G +P
Sbjct: 74 VETLRNTGQVVHLLLEKGQVP 94
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 3 NGTLGFSIRGGREHTT---GVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEV 58
+G+LG S+ GG + G++V + PK AE G + GD+++ +NG +E ATH +
Sbjct: 22 DGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 81
Query: 59 LQLIHSQNIISLKVRSVGMIP 79
++ + + + + G +P
Sbjct: 82 VETLRNTGQVVHLLLEKGQVP 102
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERS--GLLIGDQIIRINGFPIEDATHSEVLQ 60
NG GF+++GG + V VS V P + A+ L GDQ++ ING I + TH +V+
Sbjct: 15 NGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVL 74
Query: 61 LIHS 64
I +
Sbjct: 75 FIKA 78
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQLI-H 63
LG +I+ E T + V+ + A+RSGL+ +GD++ +NG P+ED E++Q++
Sbjct: 17 LGATIKKD-EQTGAIIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQ 75
Query: 64 SQNIISLKV 72
SQ I+ K+
Sbjct: 76 SQGAITFKI 84
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 7 GFSIRG------------GREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDAT 54
GF++RG G + VS V P A+R+G+ GD+I+ +NG +E AT
Sbjct: 20 GFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGAT 79
Query: 55 HSEVLQLIHS-QNIISLKVRSVG 76
H +V+ LI + + + L V SVG
Sbjct: 80 HKQVVDLIRAGEKELILTVLSVG 102
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERS--GLLIGDQIIRINGFPIEDATHSEVLQ 60
NG GF+++GG + V VS V P + A+ L GDQ++ ING I + TH +V+
Sbjct: 28 NGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVL 87
Query: 61 LIHS 64
I +
Sbjct: 88 FIKA 91
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERS--GLLIGDQIIRINGFPIEDATHSEVLQ 60
NG GF+++GG + V VS V P + A+ L GDQ++ ING I + TH +V+
Sbjct: 26 NGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVL 85
Query: 61 LIHS 64
I +
Sbjct: 86 FIKA 89
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Query: 6 LGFSIRGG--------REHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSE 57
LGFSI GG R G+FV+ V+P+ A + L GD+II+ NG+ + H +
Sbjct: 5 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQ 63
Query: 58 VLQLIHS-QNIISL-KVRSVG 76
+ L+ + QN + L VR VG
Sbjct: 64 AVSLLKTFQNTVELIIVREVG 84
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Query: 6 LGFSIRGG--------REHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSE 57
LGFSI GG R G+FV+ V+P+ A + L GD+II+ NG+ + H +
Sbjct: 4 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQ 62
Query: 58 VLQLIHS-QNIISL-KVRSVG 76
+ L+ + QN + L VR VG
Sbjct: 63 AVSLLKTFQNTVELIIVREVG 83
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
Length = 101
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Query: 7 GFSIRG------------GREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDAT 54
GF++RG G + VS V P A+R+G+ GD+I+ +NG +E AT
Sbjct: 20 GFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGAT 79
Query: 55 HSEVLQLIHS 64
H +V+ LI +
Sbjct: 80 HKQVVDLIRA 89
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 6 LGFSIRGGREHTTGV----FVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQ 60
G ++GG T + V +EP S AER GLL +GD+++ ING ED T E Q
Sbjct: 29 FGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQ 88
Query: 61 LI 62
L+
Sbjct: 89 LL 90
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 9/81 (11%)
Query: 1 MFNGT--LGFSIRGG--REHTTG---VFVSNVEPKSEAERSG-LLIGDQIIRINGFPIED 52
+F G LGFSI GG +H G ++V+ + A++ G L +GD+++ +N + +E+
Sbjct: 30 LFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEE 89
Query: 53 ATHSEVLQLI-HSQNIISLKV 72
TH E + ++ ++ ++ LKV
Sbjct: 90 VTHEEAVAILKNTSEVVYLKV 110
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In
Human Cdna, Kiaa1095
Length = 107
Score = 41.6 bits (96), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 3 NGTLGFSIRGGR--------EHTTGVFVSN-VEPKSEAERSGLLIGDQIIRINGFPIEDA 53
+G+LGF+I GGR + G+FVS V+ A+ GL I D+II +NG + A
Sbjct: 18 SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRA 77
Query: 54 THSEVLQ 60
TH + ++
Sbjct: 78 THDQAVE 84
>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim
Domain 2
Length = 94
Score = 41.6 bits (96), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSE 57
GF I GGR+ T + V+ V + +AE + L GD I+ ING E+ H+E
Sbjct: 19 GFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAE 69
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Query: 7 GFSIRG------------GREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDAT 54
GF++RG G + VS V P A+R+G+ GD+I+ +NG +E AT
Sbjct: 20 GFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGAT 79
Query: 55 HSEVLQLIHS 64
H +V+ LI +
Sbjct: 80 HKQVVDLIRA 89
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIH- 63
LG SI G R + TGVFVS++ A+ G L+ GDQI+ +NG + +AT V L+
Sbjct: 18 LGLSIVGKR-NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKC 76
Query: 64 SQNIISLKV 72
S ++L+V
Sbjct: 77 SLGTVTLEV 85
>pdb|2P3W|A Chain A, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
pdb|2P3W|B Chain B, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
Length = 112
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 15 EHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNIISLKVR 73
E ++G++V V P S ++R G+ GD I+++NG P+ D+ SE+ + + +++ + L+VR
Sbjct: 32 EVSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS--SELQEAVLTESPLLLEVR 88
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 3 NGTLGFSIRGGREHT------------TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
N LGFSI GG + G++V+ V AE +GL IGD+I+++NG+ +
Sbjct: 37 NLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 96
Query: 51 EDATHSE 57
TH +
Sbjct: 97 TMVTHDQ 103
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQLIHS 64
GF I GG E +++ ++ P A+ G L GD++I ++G P+ +H V+QL+
Sbjct: 15 FGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQ 74
Query: 65 ---QNIISLKVR 73
Q ++L VR
Sbjct: 75 AAKQGHVNLTVR 86
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 7 GFSIRGGREH-------TTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVL 59
GF+IR R + T V NVE S A ++GL GD I ING P+ H+EV+
Sbjct: 15 GFTIRAIRVYVGDSDIYTVHHIVWNVEEGSPACQAGLKAGDLITHINGEPVHGLVHTEVI 74
Query: 60 Q-LIHSQNIISL 70
+ L+ S N +S+
Sbjct: 75 ELLLKSGNKVSI 86
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS 64
GF++ + G F+ +V+P S AE SGL D+I+ +NG +E H +V+ I +
Sbjct: 23 GFNLHSDKSKP-GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRA 79
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQLIH 63
GF I GG E + + V A+R G L GD+++ ++G P+ TH V+ L+H
Sbjct: 22 FGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMH 80
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 19 GVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS 64
G F+ +V+P S AE SGL D+I+ +NG +E H +V+ I +
Sbjct: 29 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRA 74
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 3 NGTLGFSIRGGREHT-----TGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHS 56
N LGFSI GG ++ G+F++ + P A G L + D I+R+N + + +HS
Sbjct: 19 NSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHS 78
Query: 57 EVLQ-LIHSQNIISLKVR 73
+ ++ L + +I+ L VR
Sbjct: 79 KAVEALKEAGSIVRLYVR 96
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 6 LGFSIRGG-REHT--------TGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATH 55
LG SIRGG R H G+F+S V P A R G L +G +++ +N + TH
Sbjct: 23 LGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTH 82
Query: 56 SEVLQLIHS 64
E +QL+ S
Sbjct: 83 GEAVQLLRS 91
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 19 GVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS 64
G F+ +V+P S AE SGL D+I+ +NG +E H +V+ I +
Sbjct: 34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRA 79
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 19 GVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS 64
G F+ +V+P S AE SGL D+I+ +NG +E H +V+ I +
Sbjct: 34 GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRA 79
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 6 LGFSIRGG--------REHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSE 57
LGFSI GG R G+FV+ V+P+ A + L GD+II+ NG+ + H +
Sbjct: 15 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQ 73
Query: 58 VLQLIHS-QNIISLKV 72
+ L+ + QN + L +
Sbjct: 74 AVSLLKTFQNTVELII 89
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 6 LGFSIRGGREHTTG---VFVSNVEPKSEAERSGLLI-GDQIIRINGFPIEDATHSEVLQL 61
LGFSI GG G ++V V K A G L GDQII +NG +E TH E + +
Sbjct: 38 LGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAI 97
Query: 62 I-HSQNIISLKVRS 74
+ ++ ++L V S
Sbjct: 98 LKRTKGTVTLMVLS 111
Score = 37.4 bits (85), Expect = 0.017, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 92 VDTNKSNLNQNERFPVVPITLEVPPHGKLGCGICKG---PQWKPGIFVQ--FTKDACVAK 146
VD NL ITLE P G LG I G P I+V+ F K A ++
Sbjct: 11 VDLGTENLYFQSMPQCKSITLERGPDG-LGFSIVGGYGSPHGDLPIYVKTVFAKGA-ASE 68
Query: 147 DAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS 180
D LK GDQI+A NG VT E AV+++K +
Sbjct: 69 DGRLKRGDQIIAVNGQSLE-GVTHEEAVAILKRT 101
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 6 LGFSIRGG--------REHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSE 57
LGFSI GG R G+FV+ V+P+ A + L GD+II+ NG+ + H +
Sbjct: 23 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQ 81
Query: 58 VLQLIHS-QNIISLKV 72
+ L+ + QN + L +
Sbjct: 82 AVSLLKTFQNTVELII 97
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
GF +R G E G + ++EP S AE +GL D ++ +NG +E H V+++I
Sbjct: 20 GFYLRAGPEQK-GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMI 74
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 6 LGFSIRGG--REHTTG---VFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE-V 58
LGFSI GG +H G ++V+++ A + G L IGD+++ +N +E+ TH E V
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAV 75
Query: 59 LQLIHSQNIISLKV 72
L ++ + + LKV
Sbjct: 76 TALKNTSDFVYLKV 89
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 127 GPQWKPG---IFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS 180
G Q PG I+V + KD L+ GD++LA N V +VT E AV+ +K++
Sbjct: 25 GNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLE-EVTHEEAVTALKNT 81
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 11/82 (13%)
Query: 5 TLGFSIRGGR---------EHTTGVFVSNVEPKSEAERSGLLI-GDQIIRINGFPIEDAT 54
+LG SI GGR E G+F+ +V S A ++G L GD+I+ ++G + DA+
Sbjct: 37 SLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDAS 96
Query: 55 HSEVLQLIH-SQNIISLKVRSV 75
H + ++ I + N + V+S+
Sbjct: 97 HEQAVEAIRKAGNPVVFMVQSI 118
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The
Hdl-Receptor Sr-Bi With The Pdz3 Domain Of Its Adaptor
Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The
Hdl-Receptor Sr-Bi With The Pdz3 Domain Of Its Adaptor
Protein Pdzk1
Length = 89
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
GF +R G E G + ++EP S AE +GL D ++ +NG +E H V+++I
Sbjct: 16 GFYLRAGPEQK-GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMI 70
>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain
Length = 85
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH 63
G GF ++GG++ + +S + P S+A +S L GD ++ I+G + TH E I
Sbjct: 11 GPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIK 70
Query: 64 S 64
S
Sbjct: 71 S 71
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 3 NGTLGFSIRGGREHT------------TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
N LGFSI GG + G++V+ V AE +GL IGD+I+++NG+ +
Sbjct: 18 NLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 77
Query: 51 EDATHSEVLQLI--HSQNIISLKV 72
TH + + + S+ ++ L V
Sbjct: 78 TMVTHDQARKRLTKRSEEVVRLLV 101
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 3 NGTLGFSIRGGREHT------------TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
N LGFSI GG + G++V+ V AE +GL IGD+I+++NG+ +
Sbjct: 26 NLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 85
Query: 51 EDATHSEVLQLI--HSQNIISLKV 72
TH + + + S+ ++ L V
Sbjct: 86 TMVTHDQARKRLTKRSEEVVRLLV 109
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 3 NGTLGFSIRGGREHT------------TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
N LGFSI GG + G++V+ V AE +GL IGD+I+++NG+ +
Sbjct: 26 NLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 85
Query: 51 EDATHSEVLQLI--HSQNIISLKV 72
TH + + + S+ ++ L V
Sbjct: 86 TMVTHDQARKRLTKRSEEVVRLLV 109
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSE 57
GF I GGR+ T + V+ V + +A+ + L GD I+ ING E H+E
Sbjct: 15 GFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAE 65
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 3 NGTLGFSIRGGREHT------------TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
N LGFSI GG + G++V+ V AE +GL IGD+I+++NG+ +
Sbjct: 16 NLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 75
Query: 51 EDATHSEVLQLI--HSQNIISLKV 72
TH + + + S+ ++ L V
Sbjct: 76 TMVTHDQARKRLTKRSEEVVRLLV 99
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 3 NGTLGFSIRGGREHT------------TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
N LGFSI GG + G++V+ V AE +GL IGD+I+++NG+ +
Sbjct: 27 NLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 86
Query: 51 EDATHSEVLQLI--HSQNIISLKV 72
TH + + + S+ ++ L V
Sbjct: 87 TMVTHDQARKRLTKRSEEVVRLLV 110
>pdb|2EDP|A Chain A, Solution Structure Of The Pdz Domain From Human Shroom
Family Member 4
Length = 100
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERS-GLLIGDQIIRINGFPIEDATHSEVLQLIHSQ 65
GF+++GG EH + VS +E +A S + GD+++ ING P+ + ++ + S
Sbjct: 24 GFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGSRQEALILIKGSF 83
Query: 66 NIISLKVR 73
I+ L VR
Sbjct: 84 RILKLIVR 91
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 11/82 (13%)
Query: 5 TLGFSIRGGR---------EHTTGVFVSNVEPKSEAERSGLLI-GDQIIRINGFPIEDAT 54
+LG SI GGR E G+F+ +V S A ++G L GD+I+ ++G + DA+
Sbjct: 17 SLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDAS 76
Query: 55 HSEVLQLIH-SQNIISLKVRSV 75
H + ++ I + N + V+S+
Sbjct: 77 HEQAVEAIRKAGNPVVFMVQSI 98
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 6 LGFSIRGG--REHTTG---VFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE-V 58
LGFSI GG +H G ++V+ + A + G L IGD+++ +N +E+ TH E V
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAV 75
Query: 59 LQLIHSQNIISLKV 72
L ++ + + LKV
Sbjct: 76 TALKNTSDFVYLKV 89
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 127 GPQWKPG---IFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS 180
G Q PG I+V + + KD L+ GD++LA N V +VT E AV+ +K++
Sbjct: 25 GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLE-EVTHEEAVTALKNT 81
>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein
Length = 90
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH 63
G GF ++GG++ + +S + P S+A +S L GD ++ I+G + TH E I
Sbjct: 18 GPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIK 77
Query: 64 S 64
S
Sbjct: 78 S 78
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 6 LGFSIRGG--REHTTG---VFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSE-V 58
LGFSI GG +H G ++V+ + A + G L IGD+I+ +N +ED H + V
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAV 75
Query: 59 LQLIHSQNIISLKV 72
L ++ +++ LKV
Sbjct: 76 AALKNTYDVVYLKV 89
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 107 VVPITLEVPPHGKLGCGICKG--PQWKPG---IFV-QFTKDACVAKDAGLKCGDQILACN 160
V+ I L P G LG I G Q PG I+V + + KD L+ GD+ILA N
Sbjct: 4 VMEIKLIKGPKG-LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVN 62
Query: 161 GVKFSPDVTFEHAVSVMKSS 180
V DV E AV+ +K++
Sbjct: 63 SVGLE-DVMHEDAVAALKNT 81
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
Length = 97
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 5 TLGFSIRGG----REHTTGVFVSNVEPKSEAERSGLLI-GDQIIRINGFPIEDATHSEVL 59
T GF IRGG R + V +++V P A+R G + GD+++ ++G + TH+E +
Sbjct: 15 TFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAM 74
Query: 60 QLI 62
++
Sbjct: 75 SIL 77
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 14/84 (16%)
Query: 3 NGTLGFSIRGGREHT------------TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
N LGFSI GG + G++V+ V AE +GL IGD+I+++NG+ +
Sbjct: 26 NLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 85
Query: 51 EDATHSEVLQLI--HSQNIISLKV 72
TH + + + S+ ++ L V
Sbjct: 86 TMVTHDQARKRLTKRSEEVVRLLV 109
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With
Ra-Gef2 Peptide
Length = 96
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 5 TLGFSIRGGREHTT---GVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQ 60
+LG S+ GG + G++V V P+ AE G + GD+++ +NG +E ATH + ++
Sbjct: 17 SLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 76
Query: 61 LI 62
+
Sbjct: 77 TL 78
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 5 TLGFSIRGGREHTT---GVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQ 60
+LG S+ GG + G++V V P+ AE G + GD+++ +NG +E ATH + ++
Sbjct: 17 SLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVE 76
Query: 61 LI 62
+
Sbjct: 77 TL 78
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 28/155 (18%)
Query: 15 EHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNIISLKVRS 74
E G VS V P S AE +GL GD I +IN I AT + I L+V S
Sbjct: 279 EDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKT-------TISLLRVGS 331
Query: 75 VGMIPTKERDKSVTWKFVDTN----KSNLNQNERFPVVPITL-----EVPPHGKLGCGIC 125
I + +K +T V T+ + L N F + + L E PPHG +
Sbjct: 332 TVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNNPF-LYGLALRAFEQESPPHGNV----- 385
Query: 126 KGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACN 160
G+ V + AG++ GD I++ N
Sbjct: 386 ------IGVQVVGASENSAGWRAGIRPGDIIISAN 414
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE 57
LGF+I GG E G+FVS + A+ SG L GDQI+ +NG + A+H +
Sbjct: 16 LGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQ 67
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 28/155 (18%)
Query: 15 EHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNIISLKVRS 74
E G VS V P S AE +GL GD I +IN I AT + I L+V S
Sbjct: 279 EDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKT-------TISLLRVGS 331
Query: 75 VGMIPTKERDKSVTWKFVDTN----KSNLNQNERFPVVPITL-----EVPPHGKLGCGIC 125
I + +K +T V T+ + L N F + + L E PPHG +
Sbjct: 332 TVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNNPF-LYGLALRAFEQESPPHGNV----- 385
Query: 126 KGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACN 160
G+ V + AG++ GD I++ N
Sbjct: 386 ------IGVQVVGASENSAGWRAGIRPGDIIISAN 414
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 6 LGFSIRGG--REHTTG---VFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE-V 58
LGFSI GG +H G ++V+ + A + G L IGD+++ +N +E+ TH E V
Sbjct: 15 LGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAV 74
Query: 59 LQLIHSQNIISLKVRSVG 76
L ++ + + LKV G
Sbjct: 75 TALKNTSDFVYLKVAKPG 92
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 116 PHGKLGCGIC----KGPQWKPG---IFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPD 167
P G G G G Q PG I+V + + KD L+ GD++LA N V +
Sbjct: 9 PRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALE-E 67
Query: 168 VTFEHAVSVMKSS 180
VT E AV+ +K++
Sbjct: 68 VTHEEAVTALKNT 80
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 28/155 (18%)
Query: 15 EHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNIISLKVRS 74
E G VS V P S AE +GL GD I +IN I AT + I L+V S
Sbjct: 279 EDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKT-------TISLLRVGS 331
Query: 75 VGMIPTKERDKSVTWKFVDTN----KSNLNQNERFPVVPITL-----EVPPHGKLGCGIC 125
I + +K +T V T+ + L N F + + L E PPHG +
Sbjct: 332 TVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNNPF-LYGLALRAFEQESPPHGNV----- 385
Query: 126 KGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACN 160
G+ V + AG++ GD I++ N
Sbjct: 386 ------IGVQVVGASENSAGWRAGIRPGDIIISAN 414
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
GF +R G E G + ++EP S AE +GL D ++ +NG +E H V+++I
Sbjct: 19 GFYLRAGPEQK-GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMI 73
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSE 57
GF I GGR+ T + V+ V + +A+ + L GD I+ ING E H+E
Sbjct: 14 GFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAE 64
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz
Binding Motif
Length = 90
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQ 65
GF++ + G ++ +V+P S A RSGL D++I +NG +E H+EV+ I ++
Sbjct: 18 GFNLHSDKSRP-GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 75
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 3 NGTLGFSI-----RGGREHTT---GVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDA 53
+G+LG S+ +GG + G++V + PK AE G + GD+++ +NG +E A
Sbjct: 14 DGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGA 73
Query: 54 THSEVLQLIHSQNIISLKVRSVGMIP 79
TH + ++ + + + + G +P
Sbjct: 74 THKQAVETLRNTGQVVHLLLEKGQVP 99
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 6 LGFSIRGG--REHTTG---VFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE-V 58
LGFSI GG +H G ++V+ + A + G L IGD+++ +N +E+ TH E V
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAV 75
Query: 59 LQLIHSQNIISLKV 72
L ++ + + LKV
Sbjct: 76 TALKNTSDFVYLKV 89
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 127 GPQWKPG---IFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS 180
G Q PG I+V + + KD L+ GD++LA N V +VT E AV+ +K++
Sbjct: 25 GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLE-EVTHEEAVTALKNT 81
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 6 LGFSIRGG--REHTTG---VFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE-V 58
LGFSI GG +H G ++V+ + A + G L IGD+++ +N +E+ TH E V
Sbjct: 24 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAV 83
Query: 59 LQLIHSQNIISLKV 72
L ++ + + LKV
Sbjct: 84 TALKNTSDFVYLKV 97
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 127 GPQWKPG---IFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS 180
G Q PG I+V + + KD L+ GD++LA N V +VT E AV+ +K++
Sbjct: 33 GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLE-EVTHEEAVTALKNT 89
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
NG G R E +FV V+ A +GL GD+II++NG + T+S+V+ LI
Sbjct: 46 NGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALI 105
Query: 63 HSQN 66
+ +
Sbjct: 106 QNSD 109
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE 57
LGF+I GG E G+F+S + A+ SG L GDQI+ +NG + +A+H +
Sbjct: 19 LGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 70
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 6 LGFSIRGG--REHTTG---VFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE-V 58
LGFSI GG +H G ++V+ + A + G L IGD+++ +N +E+ TH E V
Sbjct: 16 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAV 75
Query: 59 LQLIHSQNIISLKV 72
L ++ + + LKV
Sbjct: 76 TALKNTSDFVYLKV 89
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 127 GPQWKPG---IFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS 180
G Q PG I+V + + KD L+ GD++LA N V +VT E AV+ +K++
Sbjct: 25 GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLE-EVTHEEAVTALKNT 81
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 6 LGFSIRGG--REHTTG---VFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE-V 58
LGFSI GG +H G ++V+ + A + G L IGD+++ +N +E+ TH E V
Sbjct: 22 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAV 81
Query: 59 LQLIHSQNIISLKV 72
L ++ + + LKV
Sbjct: 82 TALKNTSDFVYLKV 95
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 127 GPQWKPG---IFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS 180
G Q PG I+V + + KD L+ GD++LA N V +VT E AV+ +K++
Sbjct: 31 GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLE-EVTHEEAVTALKNT 87
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE 57
LGF+I GG E G+F+S + A+ SG L GDQI+ +NG + +A+H +
Sbjct: 24 LGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 75
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE 57
LGF+I GG E G+FVS + A+ SG L GD+I+ +NG + +ATH +
Sbjct: 25 LGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQ 76
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Query: 6 LGFSIR---------GGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATH 55
LGF IR G E G+F+S + P AE +GLL + D++I +NG + T
Sbjct: 45 LGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTL 104
Query: 56 SEV--LQLIHSQNII 68
+V + + +S N+I
Sbjct: 105 DQVTDMMVANSSNLI 119
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Query: 6 LGFSIR---------GGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATH 55
LGF IR G E G+F+S + P AE +GLL + D++I +NG + T
Sbjct: 17 LGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTL 76
Query: 56 SEV--LQLIHSQNII 68
+V + + +S N+I
Sbjct: 77 DQVTDMMVANSSNLI 91
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE 57
LGF+I GG E G+FVS + A+ SG L GD+I+ +NG + +ATH +
Sbjct: 28 LGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQ 79
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 6 LGFSIRGG--REHTTG---VFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE-V 58
LGFSI GG +H G ++V+ + A + G L IGD+++ +N +E+ TH E V
Sbjct: 12 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAV 71
Query: 59 LQLIHSQNIISLKV 72
L ++ + + LKV
Sbjct: 72 TALKNTSDFVYLKV 85
Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 127 GPQWKPG---IFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS 180
G Q PG I+V + + KD L+ GD++LA N V +VT E AV+ +K++
Sbjct: 21 GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLE-EVTHEEAVTALKNT 77
>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse
Alpha-Actinin-2 Associated Lim Protein
Length = 103
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSE 57
GF + GG + + ++ + P S+A + L GD I+ I+GF E TH++
Sbjct: 18 GFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHAD 68
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE 57
LGF+I GG E G+F+S + A+ SG L GDQI+ +NG + +A+H +
Sbjct: 27 LGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 78
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 11/88 (12%)
Query: 3 NGTLGFSIRGGR---------EHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIED 52
N +LG SI GG+ E G+F+ V S A ++ L GD+I+ ++G +++
Sbjct: 26 NVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQN 85
Query: 53 ATHSEVLQLI-HSQNIISLKVRSVGMIP 79
A+HSE ++ I ++ N + V+S+ P
Sbjct: 86 ASHSEAVEAIKNAGNPVVFIVQSLSSTP 113
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 3 NGTLGFSIRGGREH-----TTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHS 56
N LGFSI GG ++ + +F++ + A + G L + D I+R+N + D THS
Sbjct: 21 NSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHS 80
Query: 57 EVLQ-LIHSQNIISLKVR 73
+ ++ L + +I+ L V+
Sbjct: 81 KAVEALKEAGSIVRLYVK 98
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Query: 6 LGFSIR---------GGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATH 55
LGF IR G E G+F+S + P AE +GLL + D++I +NG + T
Sbjct: 45 LGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTL 104
Query: 56 SEV--LQLIHSQNII 68
+V + + +S N+I
Sbjct: 105 DQVTDMMVANSSNLI 119
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Query: 6 LGFSIR---------GGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATH 55
LGF IR G E G+F+S + P AE +GLL + D++I +NG + T
Sbjct: 19 LGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTL 78
Query: 56 SEV--LQLIHSQNII 68
+V + + +S N+I
Sbjct: 79 DQVTDMMVANSSNLI 93
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 17 TTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQLIHSQNI-ISLKVRS 74
TTG+F+ + P S A G L +GD+I+ +NG + ++T V+ LI + I L++++
Sbjct: 36 TTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 6 LGFSIRGG--REHTTG---VFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE-V 58
LGFSI GG +H G ++++ + A++ G L IGD+++ +N ++D H E V
Sbjct: 16 LGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAV 75
Query: 59 LQLIHSQNIISLKVRSVG 76
L ++ +++ LKV G
Sbjct: 76 ASLKNTSDMVYLKVAKPG 93
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 3 NGTLGFSIRGGREH-----TTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHS 56
N LGFSI GG ++ + +F++ + A + G L + D I+R+N + D THS
Sbjct: 11 NSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHS 70
Query: 57 EVLQ-LIHSQNIISLKVR 73
+ ++ L + +I+ L V+
Sbjct: 71 KAVEALKEAGSIVRLYVK 88
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 6 LGFSIRGG--REHTTG---VFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE-V 58
LGFSI GG +H G ++V+ + A + G L IGD+++ +N +E+ TH E V
Sbjct: 21 LGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAV 80
Query: 59 LQLIHSQNIISLKV 72
L ++ + + LKV
Sbjct: 81 TALKNTSDFVYLKV 94
Score = 29.6 bits (65), Expect = 3.3, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 127 GPQWKPG---IFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS 180
G Q PG I+V + + KD L+ GD++LA N V +VT E AV+ +K++
Sbjct: 30 GNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALE-EVTHEEAVTALKNT 86
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE 57
LGF+I GG E G+F+S + A+ SG L GDQI+ +NG + +A+H +
Sbjct: 27 LGFNIIGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQ 78
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 37.4 bits (85), Expect = 0.015, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 6 LGFSIRGGREHTTG-VFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLI 62
LG SI GG + G + + V + A + G L GDQI+ +NG + ATH E + ++
Sbjct: 17 LGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVL 75
>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A
C- Terminal Extension From Human Beta-Tropomyosin
pdb|2Q3G|B Chain B, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A
C- Terminal Extension From Human Beta-Tropomyosin
Length = 89
Score = 37.4 bits (85), Expect = 0.015, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 10/70 (14%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQN 66
GF ++GG++ + +S + P +A ++G+ +GD ++ I+G TH I +QN
Sbjct: 16 GFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTH------IEAQN 69
Query: 67 IISLKVRSVG 76
K+R+ G
Sbjct: 70 ----KIRACG 75
>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|B Chain B, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|C Chain C, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
pdb|3PS4|D Chain D, Pdz Domain From Human Microtubule-Associated
SerineTHREONINE-Protein Kinase 1
Length = 102
Score = 37.4 bits (85), Expect = 0.015, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 7 GFSIRGGREHT--TGVF-----VSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVL 59
GF++R R + T V+ V +VE A+ +GL GD I +NG P+ H EV+
Sbjct: 19 GFTLRAIRVYMGDTDVYSVHHIVWHVEEGGPAQEAGLCAGDLITHVNGEPVHGMVHPEVV 78
Query: 60 QLI 62
+LI
Sbjct: 79 ELI 81
>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
Mglur5 C-Terminal Peptide
Length = 96
Score = 37.4 bits (85), Expect = 0.017, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 3 NGTLGFSIRG-GREHTTG------VFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATH 55
N T GF I+ G H FV+ V S A+ +GL GD I +NG +E H
Sbjct: 15 NQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRH 74
Query: 56 SEVLQLIH-SQNIISLK 71
E++ +I S N++ L+
Sbjct: 75 REIVDIIKASGNVLRLE 91
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 37.4 bits (85), Expect = 0.018, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 6 LGFSIRGG--REHTTG---VFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE-V 58
LGFSI GG +H G ++V+ + A + G L IGD+++ +N +E+ TH E V
Sbjct: 11 LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAV 70
Query: 59 LQLIHSQNIISLK 71
L ++ + + LK
Sbjct: 71 TALKNTSDFVYLK 83
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 127 GPQWKPG---IFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS 180
G Q PG I+V + + KD L+ GD++LA N V +VT E AV+ +K++
Sbjct: 20 GNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLE-EVTHEEAVTALKNT 76
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 37.0 bits (84), Expect = 0.019, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQ 65
LG SI G + G++VS V S A ++GL GDQ++ NG + AT + +I Q
Sbjct: 32 LGISIVSGEK--GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQ 89
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 112 LEVPPHGK-------LGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKF 164
+E P H K LG I G K GI+V +A AGL+ GDQ+L NG+
Sbjct: 17 VEEPRHVKVQKGSEPLGISIVSGE--KGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINL 74
Query: 165 SPDVTFEHAVSVMKSSC 181
T + A ++ C
Sbjct: 75 R-SATEQQARLIIGQQC 90
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 5 TLGFSIRGG----REHTTGVFVSNVEPKSEAERSGLLI-GDQIIRINGFPIEDATHSEVL 59
T GF IRGG R + V ++ V P A+R G + GD+++ ++G + TH+E +
Sbjct: 118 TFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAM 177
Query: 60 QLI 62
++
Sbjct: 178 SIL 180
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 48/192 (25%)
Query: 5 TLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQLIH 63
TLG ++ GG + VSN+ A RS L +GD I +NG + H E++ L+
Sbjct: 20 TLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLK 79
Query: 64 --SQNII---------------SLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFP 106
+ ++ S+ R+V + KE + T+ FV ++ ++N+ P
Sbjct: 80 NVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGN---TFGFVIRGGAHDDRNKSRP 136
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSP 166
VV IT P GP + G +K GD++L+ +G++
Sbjct: 137 VV-ITCVRP----------GGPADREGT---------------IKPGDRLLSVDGIRLL- 169
Query: 167 DVTFEHAVSVMK 178
T A+S++K
Sbjct: 170 GTTHAEAMSILK 181
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues
450-558)
Length = 111
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 6 LGFSIRGGREHTTG----VFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQ 60
LGFSI R+ T G ++V N+ P+ A + G L GD++I +NG + + EV+
Sbjct: 24 LGFSITS-RDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVS 82
Query: 61 LIHS 64
L+ S
Sbjct: 83 LLRS 86
>pdb|2PKT|A Chain A, Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To
The C-Terminal Peptide Of Human Alpha-Actinin-1
Length = 91
Score = 37.0 bits (84), Expect = 0.022, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSE 57
G GF + GG++ + +S V P S+A + L IGD I I+G + TH E
Sbjct: 13 GPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLE 66
>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|B Chain B, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|C Chain C, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
pdb|2EGK|D Chain D, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion
Protein
Length = 101
Score = 37.0 bits (84), Expect = 0.024, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 3 NGTLGFSIRG-GREHTTG------VFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATH 55
N T GF I+ G H FV+ V S A+ +GL GD I +NG +E H
Sbjct: 15 NQTFGFEIQTYGLHHREEQRVEXVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRH 74
Query: 56 SEVLQLIH-SQNIISLK 71
E++ +I S N++ L+
Sbjct: 75 REIVDIIKASGNVLRLE 91
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse
Tjp2
Length = 117
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 10/76 (13%)
Query: 6 LGFSIRGGREH------TTGVFVSNVEPKSEAERSGLLI-GDQIIRINGFPIEDATHS-E 57
G ++ GGR++ T + +S+V P A+ GLL D+++ +NG P+ED HS
Sbjct: 28 FGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHSFA 85
Query: 58 VLQLIHSQNIISLKVR 73
V QL S I ++ V+
Sbjct: 86 VQQLRKSGKIAAIVVK 101
>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The
C-Terminus Of A Rabies Virus G Protein
pdb|2KYL|A Chain A, Solution Structure Of Mast2-Pdz Complexed With The
C-Terminus Of Pten
Length = 96
Score = 36.6 bits (83), Expect = 0.030, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 7 GFSIRGGREH-------TTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVL 59
GF++R R + T V +VE A +GL GD I +NG P+ H+EV+
Sbjct: 18 GFTLRAIRVYMGDSDVYTVHHMVWHVEDGGPASEAGLRQGDLITHVNGEPVHGLVHTEVV 77
Query: 60 QLI 62
+LI
Sbjct: 78 ELI 80
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 7 GFSIRGGREH-------TTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVL 59
GFS+R R + T V +VE S A+ +GL GD I ING + H +V+
Sbjct: 16 GFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVV 75
Query: 60 Q-LIHSQNIISLKVRSV 75
+ L+ S N ISL+ ++
Sbjct: 76 ELLLKSGNKISLRTTAL 92
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 12/75 (16%)
Query: 6 LGFSIRGGR---------EHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATH 55
LGF IR G E G+F+S + P A+ +GLL + D+++ +NG + +
Sbjct: 44 LGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSL 103
Query: 56 SEV--LQLIHSQNII 68
+V + + +S+N+I
Sbjct: 104 DQVTDMMIANSRNLI 118
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 35.8 bits (81), Expect = 0.048, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 6 LGFSIRGGREHTTG----VFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQ 60
LGFSI R+ T G ++V N+ P+ A + G L GD++I +NG + + EV+
Sbjct: 18 LGFSITS-RDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVS 76
Query: 61 LIHSQNI 67
L+ S +
Sbjct: 77 LLRSTKM 83
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 35.8 bits (81), Expect = 0.048, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 6 LGFSIR--GGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH 63
GF +R G + G F+ V+P A+++G+ GD+++ + G +E H E + I
Sbjct: 16 FGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQ 75
Query: 64 SQ-NIISLKVRSVGMIPTKERDKSV 87
Q + +SL V + P +R+ SV
Sbjct: 76 GQGSCVSLTV----VDPEADRETSV 96
>pdb|2UZC|A Chain A, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|B Chain B, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|C Chain C, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|D Chain D, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|E Chain E, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
Length = 88
Score = 35.8 bits (81), Expect = 0.049, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQN 66
GF ++GG++ + +S+++ +A ++ + IGD ++ I+G + TH E +QN
Sbjct: 16 GFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLE------AQN 69
Query: 67 IISLKVRSVGMIPTKERD 84
I S+ M +E D
Sbjct: 70 KIKGCTGSLNMTLQRESD 87
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 35.8 bits (81), Expect = 0.052, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 4 GTLGFSIRGGREHTTG-VFVSNVEPKSEAERSGLLI-GDQIIRINGFPIEDATHSE---V 58
G+L ++ GG + G V VS V AER G ++ GD+I+ ING + D T +E
Sbjct: 28 GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAA 87
Query: 59 LQLIHSQ--NIISLKVRSVGMIPTKERDKSVTW 89
LQ +Q + I L V + P KE D +T+
Sbjct: 88 LQKAWNQGGDWIDL---VVAVCPPKEYDDELTF 117
>pdb|1VAE|A Chain A, Solution Structure Of The Pdz Domain Of Mouse
Rhophilin-2
Length = 111
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH 63
G LGF++RG T V V ++P A +G GD I+ I G + T SEV++L+
Sbjct: 26 GDLGFTLRG----NTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLK 81
Query: 64 S 64
S
Sbjct: 82 S 82
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQLI 62
G + S+R G G++V V P+ AE G + GD+++ +NG +E ATH + ++ +
Sbjct: 33 GGVNTSVRHG-----GIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL 87
Query: 63 HSQNIISLKVRSVGMIPT 80
+ + + G PT
Sbjct: 88 RNTGQVVHLLLEKGQSPT 105
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human
Inad- Like Protein
Length = 116
Score = 35.0 bits (79), Expect = 0.076, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 6 LGFSIRGGREHT-TGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVL 59
LG SI GG++ + + V + A R G L GDQI+ +NG + +++H E +
Sbjct: 30 LGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAI 85
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 35.0 bits (79), Expect = 0.079, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 6 LGFSIRGGREHTTG----VFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQ 60
LGFSI R+ T G ++V N+ P+ A + G L GD++I +NG + + EV+
Sbjct: 43 LGFSITS-RDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVS 101
Query: 61 LIHSQNI 67
L+ S +
Sbjct: 102 LLRSTKM 108
>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp
(Grp1) In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp
(Grp1) In Complex With The C-Terminal Peptide Of The
Metabotropic Glutamate Receptor Type 1
Length = 98
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 3 NGTLGFSIRG-GREHT------TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATH 55
N T GF I+ G H FV V S A+ +GL GD I +NG +E H
Sbjct: 15 NQTFGFEIQTYGLHHREEQRVEMVTFVCRVHESSPAQLAGLTPGDTIASVNGLNVEGIRH 74
Query: 56 SEVLQLIH-SQNIISLK 71
E++ +I S N++ L+
Sbjct: 75 REIVDIIKASGNVLRLE 91
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 19 GVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
G FVS V P S A ++G+ GD I +NG PI
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI 318
>pdb|2EEG|A Chain A, Solution Structure Of Pdz Domain Of Pdz And Lim Domain
Protein
Length = 94
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSE 57
GF + GGR+ + + +S V S+A + L GD I ING E TH E
Sbjct: 21 GFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLE 71
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 19 GVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
G FVS V P S A ++G+ GD I +NG PI
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI 318
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 19 GVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
G FVS V P S A ++G+ GD I +NG PI
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI 318
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 19 GVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
G FVS V P S A ++G+ GD I +NG PI
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI 318
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 19 GVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
G FVS V P S A ++G+ GD I +NG PI
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI 318
>pdb|2V1W|A Chain A, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
pdb|2V1W|B Chain B, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
Length = 90
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSE 57
GF + GGR+ + + +S V S+A + L GD I ING E TH E
Sbjct: 15 GFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLE 65
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 19 GVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
G FVS V P S A ++G+ GD I +NG PI
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI 318
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 19 GVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
G FVS V P S A ++G+ GD I +NG PI
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI 318
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 19 GVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
G FVS V P S A ++G+ GD I +NG PI
Sbjct: 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPI 318
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 5 TLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVL 59
++G + GG + G+FV+ V S A + GL GDQI+R+N + E +
Sbjct: 40 SVGLRLAGGND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAV 92
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule
Complex With Connexin-45 Peptide
Length = 468
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 5 TLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
++G + GG + G+FV+ V S A + GL GDQI+R+N + E + +
Sbjct: 12 SVGLRLAGGND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFL 67
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 101
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 6 LGFSIRGGREHT-----TGVFVSNVEPKSEAERSGLLI-GDQIIRINGFPIEDATHSEVL 59
LGF+I GG + +G++VS ++ A G L GD+I+ +NG +++ H + +
Sbjct: 20 LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 79
Query: 60 QLIHSQN-IISLKVR 73
L + +SL+V+
Sbjct: 80 DLFRNAGYAVSLRVQ 94
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 102
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 6 LGFSIRGGREHT-----TGVFVSNVEPKSEAERSGLLI-GDQIIRINGFPIEDATHSEVL 59
LGF+I GG + +G++VS ++ A G L GD+I+ +NG +++ H + +
Sbjct: 22 LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 81
Query: 60 QLIHSQN-IISLKVR 73
L + +SL+V+
Sbjct: 82 DLFRNAGYAVSLRVQ 96
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 5 TLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
++G + GG + G+FV+ V S A + GL GDQI+R+N + E + +
Sbjct: 20 SVGLRLAGGND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFL 75
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 5 TLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVL 59
++G + GG + G+FV+ V S A + GL GDQI+R+N + E +
Sbjct: 15 SVGLRLAGGND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAV 67
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 3 NGTLGFSIRGGREH-----TTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHS 56
N LGFSI GG ++ G+F++ + P A G L + D ++R+N + + HS
Sbjct: 14 NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHS 73
Query: 57 EVLQLI 62
++ +
Sbjct: 74 RAVEAL 79
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
Length = 194
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 5 TLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
++G + GG + G+FV+ V S A + GL GDQI+R+N + E + +
Sbjct: 13 SVGLRLAGGND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFL 68
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 6 LGFSIRGGREHT-----TGVFVSNVEPKSEAERSGLLI-GDQIIRINGFPIEDATHSEVL 59
LGF+I GG + +G++VS ++ A G L GD+I+ +NG +++ H + +
Sbjct: 30 LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAV 89
Query: 60 QLIHSQN-IISLKVR 73
L + +SL+V+
Sbjct: 90 DLFRNAGYAVSLRVQ 104
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
(Casp Target)
Length = 120
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 5 TLGFSIRGGREHTTG---VFVSNVEPKS-EAERSGLLIGDQIIRINGFPIEDATHSEVLQ 60
+LG SI GG G +F++ + P A+ L +GD+I+ I G E TH++ +
Sbjct: 37 SLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVN 96
Query: 61 LI 62
L+
Sbjct: 97 LL 98
>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin
Homology, Sec7
Length = 104
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 3 NGTLGFSIRGGREHTTGV-------FVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATH 55
N T GF I+ R + ++ S A +GL GD + ING E T+
Sbjct: 26 NETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTY 85
Query: 56 SEVLQLIHSQ-NIISLK 71
+V+ LI S N+++++
Sbjct: 86 KQVVDLIRSSGNLLTIE 102
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 6 LGFSI--RGGREHTTGVFVSNVEPKSEAERSGLLI-GDQIIRINGFPIEDATHSEVLQLI 62
LG ++ R E G+++S ++P S A + G + GD+II+ING IE E + L+
Sbjct: 34 LGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQING--IEVQNREEAVALL 91
Query: 63 HSQ 65
S+
Sbjct: 92 TSE 94
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
N GF+I GG E + V +V P A + G + GD I+ IN + TH++V++L
Sbjct: 29 NMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKL 88
Query: 62 IHSQNI 67
S I
Sbjct: 89 FQSVPI 94
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With
The C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With
The C Tail Peptide Of Glur2
Length = 111
Score = 33.5 bits (75), Expect = 0.23, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLI-GDQIIRINGFPIEDATHSEVLQLIH 63
+G SI GG ++ G+++ V + A G + GD+I +NG I+ T EV ++I
Sbjct: 19 IGISIGGGAQYCPGLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 77
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIF-VQFTKDACVAKDAGLKCGDQILACNG 161
+TL+ +G I G Q+ PG++ VQ + A D + GD+I NG
Sbjct: 9 VTLQKDAQNLIGISIGGGAQYCPGLYIVQVFDNTPAALDGTVAAGDEITGVNG 61
>pdb|1WF7|A Chain A, Solution Structure Of The Pdz Domain Of Enigma Homologue
Protein
Length = 103
Score = 33.1 bits (74), Expect = 0.28, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSE 57
GF ++GG++ + +S+++ +A ++ + IGD ++ I+G + TH E
Sbjct: 18 GFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLE 68
>pdb|3ID2|A Chain A, Crystal Structure Of Rsep Pdz2 Domain
pdb|3ID2|B Chain B, Crystal Structure Of Rsep Pdz2 Domain
Length = 90
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 16 HTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
H + NV+P S A ++GL GD+I++++G P+
Sbjct: 1 HMIEPVLENVQPNSAASKAGLQAGDRIVKVDGQPL 35
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 15 EHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNIISLKVRS 74
E G VS V P S AE +GL GD I +IN I AT + I L+V S
Sbjct: 279 EDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKT-------TISLLRVGS 331
Query: 75 VGMIPTKERDKSVTWKFVDTN 95
I + +K +T V T+
Sbjct: 332 TVKIIVERDNKPLTLSAVVTD 352
>pdb|3ID4|A Chain A, Crystal Structure Of Rsep Pdz2 Domain Fused Gkaspv
Peptide
Length = 93
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 21 FVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
+ NV+P S A ++GL GD+I++++G P+
Sbjct: 5 VLENVQPNSAASKAGLQAGDRIVKVDGQPL 34
>pdb|3ID3|A Chain A, Crystal Structure Of Rsep Pdz2 I304a Domain
pdb|3ID3|B Chain B, Crystal Structure Of Rsep Pdz2 I304a Domain
Length = 89
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 22 VSNVEPKSEAERSGLLIGDQIIRINGFPI 50
+ NV+P S A ++GL GD+I++++G P+
Sbjct: 6 LENVQPNSAASKAGLQAGDRIVKVDGQPL 34
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 32.3 bits (72), Expect = 0.52, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 7 GFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
GF++ G +S V S A+ GL GDQI+ +N ++ A+H +V++LI
Sbjct: 16 GFTLSG----QAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLI 67
Score = 28.9 bits (63), Expect = 5.5, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 149 GLKCGDQILACNGVKFSPDVTFEHAVSVM-KSSCLLELLVHRGVG 192
GL+ GDQILA N + + E V ++ K S +L +++ GVG
Sbjct: 40 GLRAGDQILAVNEINVK-KASHEDVVKLIGKCSGVLHMVIAEGVG 83
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 32.3 bits (72), Expect = 0.58, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 133 GIFVQ-FTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS--CLLELLVHR 189
GIFV+ TK + V D ++ GDQI+A +G T + AV V++ + +L L+ R
Sbjct: 34 GIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQ-GFTNQQAVEVLRHTGQTVLLTLMRR 92
Query: 190 G 190
G
Sbjct: 93 G 93
Score = 32.0 bits (71), Expect = 0.76, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 6 LGFSIRG----GREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQ 60
LG +I G + +G+FV ++ S E G + IGDQII ++G ++ T+ + ++
Sbjct: 17 LGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVE 76
Query: 61 LI-HSQNIISLKVRSVG 76
++ H+ + L + G
Sbjct: 77 VLRHTGQTVLLTLMRRG 93
>pdb|2VSV|A Chain A, Crystal Structure Of The Pdz Domain Of Human Rhophilin-2
pdb|2VSV|B Chain B, Crystal Structure Of The Pdz Domain Of Human Rhophilin-2
Length = 109
Score = 31.6 bits (70), Expect = 0.83, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH 63
G LGF++RG V V ++P A +G GD I+ I + T SEV++L+
Sbjct: 34 GDLGFTLRG----NAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLK 89
Query: 64 S--QNIISLKVRSV 75
S ++ I +KV S+
Sbjct: 90 SFGEDEIEMKVVSL 103
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
With Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
With Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 19 GVFVSNVEPKSEAERSGLLIGDQIIRING 47
G+FV V+ S A GL GDQ+++ING
Sbjct: 28 GIFVQLVQANSPASLVGLRFGDQVLQING 56
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 133 GIFVQFTKDACVAKDAGLKCGDQILACNG 161
GIFVQ + A GL+ GDQ+L NG
Sbjct: 28 GIFVQLVQANSPASLVGLRFGDQVLQING 56
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 110 ITLEVPPH--GKLGCGI-CKGPQWKP-----GIFVQ-FTKDACVAKDAGLKCGDQILACN 160
+T EVP + G G G+ KG + K GIFV+ +KD L+ DQ++A N
Sbjct: 9 LTFEVPLNDSGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVN 68
Query: 161 G 161
G
Sbjct: 69 G 69
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 31.6 bits (70), Expect = 0.97, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 14 REHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQLI 62
R V +S + AE+SGLL GD+++ ING I +EV L+
Sbjct: 44 RNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLL 93
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 19 GVFVSNVEPKSEAERSGLLIGDQIIRING 47
G+FV V+ S A GL GDQ+++ING
Sbjct: 28 GIFVQLVQANSPASLVGLRFGDQVLQING 56
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 133 GIFVQFTKDACVAKDAGLKCGDQILACNG 161
GIFVQ + A GL+ GDQ+L NG
Sbjct: 28 GIFVQLVQANSPASLVGLRFGDQVLQING 56
>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3 (Neuron-
Specific X11l2 Protein) (Neuronal Munc18-1-Interacting
Protein 3) (Mint-3) (Adapter Protein X11gamma)
Length = 94
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 31 AERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
AER G+ +G +II ING + H+ +++L+
Sbjct: 40 AERGGIRVGHRIIEINGQSVVATPHARIIELL 71
>pdb|2EAQ|A Chain A, Crystal Structure Of Pdz Domain Of Kiaa0858 (Lim),
Ms0793 From Homo Sapiens
Length = 90
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRIN 46
GF+I+ G+FV++VE S AE S L + D+II IN
Sbjct: 19 FGFTIKW---DIPGIFVASVEAGSPAEFSQLQVDDEIIAIN 56
Score = 28.5 bits (62), Expect = 7.5, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 132 PGIFVQFTKDACVAKDAGLKCGDQILACNGVKFS 165
PGIFV + A+ + L+ D+I+A N KFS
Sbjct: 28 PGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFS 61
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 6 LGFSIRGGREHT-------TGVF-----VSNVEPKSEAERSGLLIGDQIIRINGFPIEDA 53
GF +RG + T T F + +V+ A R+GL +GD +I +NG +
Sbjct: 21 FGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKV 80
Query: 54 THSEVLQLI-HSQNIISLKVRSVGMIP 79
H +V+ +I N + +KV V P
Sbjct: 81 GHRQVVNMIRQGGNTLMVKVVMVTRHP 107
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 6 LGFSIRGGREHT-------TGVF-----VSNVEPKSEAERSGLLIGDQIIRINGFPIEDA 53
GF +RG + T T F + +V+ A R+GL +GD +I +NG +
Sbjct: 21 FGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKV 80
Query: 54 THSEVLQLIHSQNIISLKVRSVGMIPTKERDKSV 87
H +V+ +I Q +L V+ V + + D++V
Sbjct: 81 GHRQVVNMIR-QGGNTLMVKVVMVTRHPDMDEAV 113
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLI-GDQIIRINGFPIEDATHSEVLQLIH 63
+G SI GG ++ +++ V + A G + GD+I +NG I+ T EV ++I
Sbjct: 38 IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 96
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 6 LGFSIRGGREHT-------TGVF-----VSNVEPKSEAERSGLLIGDQIIRINGFPIEDA 53
GF +RG + T T F + +V+ A R+GL +GD +I +NG +
Sbjct: 41 FGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKV 100
Query: 54 THSEVLQLI-HSQNIISLKVRSVGMIP 79
H +V+ +I N + +KV V P
Sbjct: 101 GHRQVVNMIRQGGNTLMVKVVMVTRHP 127
>pdb|2ZPM|A Chain A, Crystal Structure Analysis Of Pdz Domain B
Length = 91
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 22 VSNVEPKSEAERSGLLIGDQIIRINGFPI 50
+ NV+P S A +GL GD+I+ ++G P+
Sbjct: 8 LENVQPNSAASXAGLQAGDRIVXVDGQPL 36
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLI-GDQIIRINGFPIEDATHSEVLQLIH 63
+G SI GG ++ +++ V + A G + GD+I +NG I+ T EV ++I
Sbjct: 16 IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 74
>pdb|1Y7N|A Chain A, Solution Structure Of The Second Pdz Domain Of The Human
Neuronal Adaptor X11alpha
Length = 90
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
LGFS++ G + ++ AER G+ +G +II ING + H +++ ++
Sbjct: 26 LGFSVQNG-------IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHIL 75
>pdb|1U39|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 80
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
LGFS++ G + ++ AER G+ +G +II ING + H +++ ++
Sbjct: 17 LGFSVQNG-------IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHIL 66
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLI-GDQIIRINGFPIEDATHSEVLQLIH 63
+G SI GG ++ +++ V + A G + GD+I +NG I+ T EV ++I
Sbjct: 33 IGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQ 91
>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like
Protein
Length = 128
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPG---IFVQFTKDACVA-KDAGLKCGDQILACNGVKFS 165
I +E P G LG + G IFV+ + VA +D LK DQILA N
Sbjct: 29 IDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLD 88
Query: 166 PDVTFEHAVSVMKSSC-LLELLVHR 189
+++ + A+++++ + L L+V R
Sbjct: 89 QNISHQQAIALLQQTTGSLRLIVAR 113
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 19 GVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
G FVS V P S + ++G+ GD I +NG P+
Sbjct: 264 GAFVSEVLPGSGSAKAGVKAGDIITSLNGKPL 295
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
LGFS++ G + ++ AER G+ +G +II ING + H +++ ++
Sbjct: 107 LGFSVQNG-------IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHIL 156
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 6 LGFSIRGGRE--HTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQLI 62
G ++ GGR+ T + V + A+R G L +GD ++ ING + TH++ ++ I
Sbjct: 24 FGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERI 83
Query: 63 HS 64
+
Sbjct: 84 RA 85
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 30.0 bits (66), Expect = 2.6, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRIN 46
LGF+I GG E G+F+S + A+ SG L GD+II +N
Sbjct: 17 LGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDRIISVN 57
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 19 GVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
G FVS V P S + ++G+ GD I +NG P+
Sbjct: 264 GAFVSEVLPGSGSAKAGVKAGDIITSLNGKPL 295
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 6 LGFSIRGGREHTTGVF-VSNVEPKSEAERSGLLI-GDQIIRINGFPIEDATHSEVLQLI 62
LGFS+ GG + V V V P A + G + G++++ ING ++ TH + L ++
Sbjct: 29 LGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAIL 87
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRIN 46
LGF+I GG E G+F+S + A+ SG L GD+II +N
Sbjct: 20 LGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDRIISVN 60
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
Length = 91
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 9 SIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS 64
+IRG G F+ V+ A+ +GL D II +NG + D + +V+ I S
Sbjct: 22 AIRG----LPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQS 73
>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|E Chain E, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
pdb|3TMH|I Chain I, Crystal Structure Of Dual-Specific A-Kinase Anchoring
Protein 2 In Complex With Camp-Dependent Protein Kinase
A Type Ii Alpha And Pdzk1
Length = 87
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 9 SIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS 64
+IRG G F+ V+ A+ +GL D II +NG + D + +V+ I S
Sbjct: 22 AIRG----LPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQS 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,149,867
Number of Sequences: 62578
Number of extensions: 345631
Number of successful extensions: 825
Number of sequences better than 100.0: 209
Number of HSP's better than 100.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 345
length of query: 433
length of database: 14,973,337
effective HSP length: 102
effective length of query: 331
effective length of database: 8,590,381
effective search space: 2843416111
effective search space used: 2843416111
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)