Query psy12296
Match_columns 433
No_of_seqs 290 out of 2424
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 15:19:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3209|consensus 99.8 5E-20 1.1E-24 193.4 15.2 185 3-190 764-981 (984)
2 KOG3209|consensus 99.8 5.4E-18 1.2E-22 178.3 15.4 174 3-192 659-839 (984)
3 TIGR02037 degP_htrA_DO peripla 99.8 5.5E-17 1.2E-21 169.4 20.5 173 4-196 234-426 (428)
4 PRK10942 serine endoprotease; 99.7 1.3E-15 2.7E-20 161.0 22.9 170 4-197 288-471 (473)
5 PRK10139 serine endoprotease; 99.7 1.6E-15 3.4E-20 159.6 22.3 172 4-196 267-452 (455)
6 PRK10779 zinc metallopeptidase 99.7 3.2E-15 7E-20 157.1 18.9 158 20-198 128-286 (449)
7 KOG3580|consensus 99.6 2.9E-15 6.3E-20 155.4 14.4 189 3-200 19-288 (1027)
8 TIGR00054 RIP metalloprotease 99.5 1.8E-13 3.9E-18 142.7 17.1 141 18-198 128-268 (420)
9 KOG3580|consensus 99.4 3E-13 6.4E-18 140.7 9.8 169 19-190 220-489 (1027)
10 PF00595 PDZ: PDZ domain (Also 99.4 1.8E-12 3.9E-17 104.2 7.9 71 3-73 9-81 (81)
11 KOG3605|consensus 99.4 2.4E-12 5.3E-17 135.2 10.3 143 2-180 655-803 (829)
12 COG0793 Prc Periplasmic protea 99.3 2.7E-12 5.9E-17 133.1 10.0 174 116-298 98-337 (406)
13 PF00595 PDZ: PDZ domain (Also 99.2 6.1E-11 1.3E-15 95.3 8.3 78 110-188 2-81 (81)
14 PF13180 PDZ_2: PDZ domain; PD 99.2 1.5E-10 3.2E-15 93.5 10.5 70 4-76 1-73 (82)
15 cd00136 PDZ PDZ domain, also c 99.1 4.5E-10 9.7E-15 87.2 9.3 67 4-72 1-69 (70)
16 KOG3550|consensus 99.1 1.7E-10 3.7E-15 102.3 7.0 73 3-75 100-174 (207)
17 PLN00049 carboxyl-terminal pro 99.1 8.9E-10 1.9E-14 114.1 12.1 164 132-298 102-329 (389)
18 smart00228 PDZ Domain present 99.0 2.4E-09 5.2E-14 85.4 10.4 72 4-75 12-84 (85)
19 cd00992 PDZ_signaling PDZ doma 99.0 1.8E-09 3.9E-14 86.1 9.2 70 3-72 11-81 (82)
20 PF13180 PDZ_2: PDZ domain; PD 99.0 2.4E-09 5.2E-14 86.4 9.7 77 120-197 3-79 (82)
21 cd00988 PDZ_CTP_protease PDZ d 99.0 7.7E-09 1.7E-13 83.3 11.4 69 4-75 2-72 (85)
22 PRK11186 carboxy-terminal prot 99.0 2E-09 4.4E-14 117.6 10.1 166 118-293 244-481 (667)
23 KOG3553|consensus 98.9 2.1E-10 4.6E-15 94.9 1.1 72 5-76 36-117 (124)
24 cd00992 PDZ_signaling PDZ doma 98.8 2.6E-08 5.5E-13 79.4 9.8 77 110-187 4-81 (82)
25 TIGR00225 prc C-terminal pepti 98.8 1.3E-08 2.8E-13 103.3 9.9 72 118-193 51-124 (334)
26 cd00990 PDZ_glycyl_aminopeptid 98.8 5E-08 1.1E-12 77.7 10.0 66 6-76 3-68 (80)
27 KOG3550|consensus 98.8 1.9E-08 4.1E-13 89.4 7.7 74 116-190 99-174 (207)
28 smart00228 PDZ Domain present 98.8 7.9E-08 1.7E-12 76.6 10.7 79 111-191 6-85 (85)
29 cd00991 PDZ_archaeal_metallopr 98.8 6.9E-08 1.5E-12 77.5 10.1 61 14-76 6-69 (79)
30 KOG3551|consensus 98.8 6.6E-09 1.4E-13 104.3 4.7 72 3-74 95-168 (506)
31 cd00991 PDZ_archaeal_metallopr 98.8 7.4E-08 1.6E-12 77.3 10.0 66 131-196 9-74 (79)
32 cd00136 PDZ PDZ domain, also c 98.7 8.7E-08 1.9E-12 74.2 8.5 66 119-187 2-69 (70)
33 KOG3553|consensus 98.7 3.4E-09 7.5E-14 87.8 0.0 60 131-191 58-117 (124)
34 cd00990 PDZ_glycyl_aminopeptid 98.7 1.6E-07 3.4E-12 74.8 9.6 71 120-196 3-73 (80)
35 KOG3549|consensus 98.7 2.6E-08 5.7E-13 98.9 6.0 72 3-74 65-138 (505)
36 cd00987 PDZ_serine_protease PD 98.6 4.7E-07 1E-11 73.3 10.5 65 131-195 23-87 (90)
37 cd00989 PDZ_metalloprotease PD 98.6 4.9E-07 1.1E-11 71.6 10.2 67 5-76 2-70 (79)
38 cd00986 PDZ_LON_protease PDZ d 98.6 3.5E-07 7.6E-12 73.0 9.4 56 18-76 8-66 (79)
39 cd00986 PDZ_LON_protease PDZ d 98.5 6.6E-07 1.4E-11 71.4 9.5 64 132-196 8-71 (79)
40 cd00987 PDZ_serine_protease PD 98.5 5.4E-07 1.2E-11 73.0 8.6 58 17-76 23-83 (90)
41 cd00988 PDZ_CTP_protease PDZ d 98.5 4.8E-07 1E-11 72.8 8.1 71 119-193 3-76 (85)
42 TIGR00225 prc C-terminal pepti 98.5 7.9E-07 1.7E-11 90.3 11.3 70 4-76 51-122 (334)
43 KOG1421|consensus 98.5 1.3E-06 2.8E-11 93.4 12.6 147 20-186 305-456 (955)
44 PLN00049 carboxyl-terminal pro 98.5 1.2E-06 2.7E-11 90.8 12.4 73 4-76 85-162 (389)
45 KOG3551|consensus 98.5 1.8E-07 3.8E-12 94.2 5.2 81 107-188 85-167 (506)
46 TIGR01713 typeII_sec_gspC gene 98.4 1.1E-06 2.4E-11 86.3 10.0 72 5-76 178-250 (259)
47 cd00989 PDZ_metalloprotease PD 98.4 2.7E-06 6E-11 67.3 10.3 63 132-195 12-74 (79)
48 TIGR01713 typeII_sec_gspC gene 98.4 1.5E-06 3.2E-11 85.4 9.6 66 131-196 190-255 (259)
49 KOG3549|consensus 98.4 7.5E-07 1.6E-11 88.7 7.5 83 105-188 53-137 (505)
50 COG0793 Prc Periplasmic protea 98.4 2.1E-06 4.6E-11 89.4 11.1 71 4-76 100-172 (406)
51 TIGR02038 protease_degS peripl 98.3 2.7E-06 5.8E-11 87.1 10.5 72 5-76 256-337 (351)
52 PRK10898 serine endoprotease; 98.3 3E-06 6.4E-11 86.9 10.8 60 17-76 278-338 (353)
53 KOG1892|consensus 98.3 1.4E-06 3E-11 95.6 6.9 75 2-76 941-1020(1629)
54 TIGR02038 protease_degS peripl 98.1 9.8E-06 2.1E-10 83.0 9.8 67 131-197 277-343 (351)
55 PRK10898 serine endoprotease; 98.1 1.3E-05 2.8E-10 82.2 10.4 67 131-197 278-344 (353)
56 TIGR02037 degP_htrA_DO peripla 98.1 1.1E-05 2.3E-10 84.7 10.0 67 131-197 256-322 (428)
57 PRK10139 serine endoprotease; 98.1 1.3E-05 2.8E-10 84.9 10.5 68 131-198 289-356 (455)
58 KOG1421|consensus 98.1 3.7E-05 7.9E-10 82.6 13.4 164 20-221 773-939 (955)
59 PRK10942 serine endoprotease; 98.1 1.5E-05 3.2E-10 84.8 10.4 68 131-198 310-377 (473)
60 PRK11186 carboxy-terminal prot 98.1 1.2E-05 2.7E-10 88.3 9.2 69 4-75 244-320 (667)
61 KOG3542|consensus 98.0 5.3E-06 1.2E-10 88.5 5.5 71 4-74 548-618 (1283)
62 TIGR00054 RIP metalloprotease 98.0 2.1E-05 4.5E-10 82.5 9.2 57 18-76 203-261 (420)
63 KOG3571|consensus 98.0 8.1E-06 1.8E-10 84.8 5.8 69 6-74 263-338 (626)
64 KOG3651|consensus 98.0 1.9E-05 4.1E-10 77.6 8.1 72 3-74 15-88 (429)
65 PRK10779 zinc metallopeptidase 98.0 2.9E-05 6.4E-10 82.0 9.7 57 18-76 221-279 (449)
66 KOG3542|consensus 97.9 1.3E-05 2.8E-10 85.7 6.4 81 109-190 538-619 (1283)
67 KOG3552|consensus 97.9 1.1E-05 2.3E-10 88.7 5.5 67 3-75 64-132 (1298)
68 PF04495 GRASP55_65: GRASP55/6 97.9 0.00013 2.8E-09 65.1 10.8 70 3-74 25-100 (138)
69 KOG3606|consensus 97.8 3.8E-05 8.3E-10 74.5 7.0 71 3-73 170-251 (358)
70 KOG3571|consensus 97.8 2.4E-05 5.2E-10 81.5 6.0 83 108-191 251-340 (626)
71 KOG3651|consensus 97.8 6E-05 1.3E-09 74.2 7.3 80 108-188 6-87 (429)
72 TIGR02860 spore_IV_B stage IV 97.8 0.00015 3.3E-09 75.1 10.7 67 3-76 95-171 (402)
73 TIGR03279 cyano_FeS_chp putati 97.8 6.4E-05 1.4E-09 78.4 7.7 52 22-76 2-54 (433)
74 KOG1320|consensus 97.7 0.00018 3.9E-09 75.8 10.0 161 18-193 287-459 (473)
75 KOG4371|consensus 97.6 0.00011 2.4E-09 81.9 7.5 169 4-190 1158-1329(1332)
76 KOG3606|consensus 97.6 0.00017 3.8E-09 70.0 7.7 76 117-193 170-256 (358)
77 TIGR02860 spore_IV_B stage IV 97.5 0.00041 8.8E-09 72.0 9.2 74 118-197 96-177 (402)
78 COG0265 DegQ Trypsin-like seri 97.4 0.00056 1.2E-08 69.7 8.8 61 16-76 268-329 (347)
79 PF14685 Tricorn_PDZ: Tricorn 97.4 0.001 2.2E-08 55.0 8.3 68 4-76 1-80 (88)
80 KOG1892|consensus 97.3 0.00032 7E-09 77.7 6.5 82 108-192 935-1021(1629)
81 KOG3552|consensus 97.3 0.00023 5E-09 78.6 5.1 68 117-190 64-132 (1298)
82 KOG0609|consensus 97.3 0.00041 8.9E-09 73.2 6.4 69 3-73 133-203 (542)
83 PRK09681 putative type II secr 97.3 0.00092 2E-08 66.1 8.1 54 24-77 210-267 (276)
84 PRK09681 putative type II secr 97.3 0.00075 1.6E-08 66.7 7.4 59 138-196 210-271 (276)
85 TIGR03279 cyano_FeS_chp putati 97.3 0.00052 1.1E-08 71.7 6.6 57 136-196 2-59 (433)
86 KOG3834|consensus 97.2 0.0028 6E-08 65.4 11.2 146 17-191 14-168 (462)
87 KOG3129|consensus 97.2 0.0011 2.4E-08 62.4 7.4 57 20-76 141-200 (231)
88 COG3975 Predicted protease wit 97.2 0.00054 1.2E-08 72.3 5.9 62 5-76 452-513 (558)
89 COG0265 DegQ Trypsin-like seri 97.2 0.0017 3.8E-08 66.1 9.3 68 131-198 269-336 (347)
90 PF04495 GRASP55_65: GRASP55/6 97.0 0.0028 6E-08 56.7 7.5 74 117-191 25-102 (138)
91 KOG3129|consensus 96.8 0.0034 7.4E-08 59.2 7.1 65 133-197 140-206 (231)
92 COG3480 SdrC Predicted secrete 96.7 0.014 3.1E-07 58.4 11.0 56 18-76 130-188 (342)
93 KOG3938|consensus 96.7 0.0015 3.3E-08 63.4 3.7 68 4-73 137-208 (334)
94 KOG0609|consensus 96.7 0.0036 7.7E-08 66.3 6.6 81 107-190 123-205 (542)
95 PF14685 Tricorn_PDZ: Tricorn 96.4 0.013 2.8E-07 48.4 7.3 59 132-191 12-80 (88)
96 COG3975 Predicted protease wit 96.4 0.007 1.5E-07 64.2 7.1 69 119-198 452-520 (558)
97 KOG0606|consensus 96.3 0.0051 1.1E-07 70.0 5.6 70 3-72 636-713 (1205)
98 KOG3605|consensus 96.3 0.0043 9.2E-08 66.8 4.4 81 108-190 647-734 (829)
99 COG3031 PulC Type II secretory 96.1 0.012 2.6E-07 56.7 6.2 60 136-195 211-270 (275)
100 KOG3532|consensus 96.0 0.018 4E-07 62.4 7.6 68 3-74 385-453 (1051)
101 PF12812 PDZ_1: PDZ-like domai 95.8 0.02 4.3E-07 46.2 5.5 47 133-179 31-77 (78)
102 KOG4407|consensus 95.8 0.0077 1.7E-07 69.1 3.9 100 20-187 98-198 (1973)
103 COG3031 PulC Type II secretory 95.7 0.02 4.4E-07 55.2 5.8 59 19-77 208-267 (275)
104 KOG1320|consensus 95.6 0.031 6.8E-07 59.2 7.1 57 18-76 398-457 (473)
105 COG3480 SdrC Predicted secrete 94.6 0.085 1.8E-06 53.0 6.7 59 132-191 130-188 (342)
106 KOG3532|consensus 94.3 0.12 2.7E-06 56.2 7.6 68 117-189 385-453 (1051)
107 KOG1738|consensus 93.7 0.089 1.9E-06 57.0 5.0 68 3-72 212-281 (638)
108 KOG0606|consensus 91.8 0.23 4.9E-06 57.1 5.1 50 135-185 661-711 (1205)
109 KOG3938|consensus 91.6 0.27 5.8E-06 48.3 4.8 79 108-190 128-210 (334)
110 COG0750 Predicted membrane-ass 91.3 0.5 1.1E-05 48.3 6.9 54 21-74 132-188 (375)
111 KOG1738|consensus 89.3 0.87 1.9E-05 49.5 6.7 73 115-190 210-285 (638)
112 PF12812 PDZ_1: PDZ-like domai 88.2 0.99 2.2E-05 36.3 4.8 43 19-63 31-73 (78)
113 KOG3834|consensus 86.4 2.6 5.7E-05 44.1 7.8 65 6-73 94-165 (462)
114 COG0750 Predicted membrane-ass 83.0 4.5 9.8E-05 41.3 7.9 58 136-193 133-193 (375)
115 KOG4371|consensus 78.7 1.6 3.5E-05 50.1 3.0 70 5-75 1258-1329(1332)
116 KOG2921|consensus 70.5 5.7 0.00012 41.3 4.3 46 131-176 219-265 (484)
117 KOG2921|consensus 69.4 4 8.7E-05 42.4 3.0 42 15-56 217-259 (484)
118 KOG4407|consensus 69.2 2.4 5.2E-05 49.8 1.5 46 19-64 144-189 (1973)
119 PF11874 DUF3394: Domain of un 69.0 15 0.00033 34.4 6.5 39 119-160 112-150 (183)
120 KOG0792|consensus 66.0 2.5 5.3E-05 48.8 0.8 62 3-64 715-796 (1144)
121 PF11874 DUF3394: Domain of un 65.4 9.4 0.0002 35.8 4.4 38 6-46 113-150 (183)
122 cd07561 Peptidase_S41_CPP_like 59.1 6.7 0.00015 38.5 2.4 40 252-291 162-202 (256)
123 cd06567 Peptidase_S41 C-termin 40.4 20 0.00044 33.8 2.3 40 252-291 146-186 (224)
124 KOG1365|consensus 36.1 27 0.0006 36.3 2.5 40 301-343 341-389 (508)
125 PF12108 SF3a60_bindingd: Spli 34.2 29 0.00062 22.6 1.5 13 307-319 14-26 (28)
126 smart00245 TSPc tail specific 31.6 35 0.00076 31.6 2.4 40 252-291 114-154 (192)
127 KOG0792|consensus 29.3 23 0.00049 41.3 0.8 68 112-180 710-797 (1144)
128 KOG1703|consensus 28.4 23 0.00051 37.9 0.7 70 5-75 9-79 (479)
129 COG5233 GRH1 Peripheral Golgi 27.6 39 0.00084 34.4 2.0 30 22-51 67-96 (417)
130 PF15471 TMEM171: Transmembran 24.2 69 0.0015 31.9 2.9 23 358-380 202-229 (319)
131 cd07560 Peptidase_S41_CPP C-te 23.6 60 0.0013 30.8 2.4 41 251-291 132-173 (211)
132 cd04459 Rho_CSD Rho_CSD: Rho p 22.2 1.2E+02 0.0025 23.9 3.3 38 3-44 9-49 (68)
No 1
>KOG3209|consensus
Probab=99.83 E-value=5e-20 Score=193.44 Aligned_cols=185 Identities=23% Similarity=0.334 Sum_probs=136.8
Q ss_pred CCeEeEEEEecCCCCCCeEEEEeCCCCHhHhCC-CCCCCEEEEECCEecCCCCHHHHHHHhcC-CcEEEEEEEEcCcc--
Q psy12296 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIHS-QNIISLKVRSVGMI-- 78 (433)
Q Consensus 3 ~~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aG-L~~GD~ILaVNG~~V~~~s~~eav~lL~~-g~~V~L~V~R~g~~-- 78 (433)
|+||||.|...... .+.-|..|.+||||+++| |++||+|++|||+++.+++|.+++++|++ |-.|+|+|.-....
T Consensus 764 NeGFGFVi~sS~~k-p~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~ee~~~ 842 (984)
T KOG3209|consen 764 NEGFGFVIMSSQNK-PESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPPEEAGP 842 (984)
T ss_pred CCceeEEEEecccC-CCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEEEcChhccCC
Confidence 78999999986554 333399999999999999 99999999999999999999999999997 78899999643211
Q ss_pred c----CccccceeeeEe-----ecCCCcc---------C--C--------CCCCCCccceEEeeCCCCCCCceeecCCCC
Q psy12296 79 P----TKERDKSVTWKF-----VDTNKSN---------L--N--------QNERFPVVPITLEVPPHGKLGCGICKGPQW 130 (433)
Q Consensus 79 ~----~~~~~~~~sv~l-----~~~p~s~---------~--~--------~~~~~~~~~v~L~~~~~~~LG~~l~gg~~~ 130 (433)
+ ..++...++.+- ...|... + . .........|.|.+. ..+|||+|+||...
T Consensus 843 ~~~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpdt~~~~~~~~r~~qn~~~~~VelErG-~kGFGFSiRGGrey 921 (984)
T KOG3209|consen 843 PTSMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPDTFQGLSINDRMSQNGDLYTVELERG-AKGFGFSIRGGREY 921 (984)
T ss_pred CCCCcchhhcCcccccCCHhHccCCCCCCccccccCCCCccccceeccccccccCCeeEEEeecc-ccccceEeeccccc
Confidence 0 000100110000 0000000 0 0 001122344555553 46799999999988
Q ss_pred CCceEEEEECCCChhhhcC-CCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEEC
Q psy12296 131 KPGIFVQFTKDACVAKDAG-LKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRG 190 (433)
Q Consensus 131 ~~GV~V~~V~~gspA~~aG-L~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~ 190 (433)
..++||-.+.+++||.+.| +++||+|++|||+++. +++|..|+++|+++....+++.|.
T Consensus 922 nM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTk-gmtH~rAIelIk~gg~~vll~Lr~ 981 (984)
T KOG3209|consen 922 NMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTK-GMTHDRAIELIKQGGRRVLLLLRR 981 (984)
T ss_pred ccceEEEEeccCCCccccCceeecceEEEecCcccC-CCcHHHHHHHHHhCCeEEEEEecc
Confidence 8999999999999999988 9999999999999999 999999999999985555555444
No 2
>KOG3209|consensus
Probab=99.77 E-value=5.4e-18 Score=178.27 Aligned_cols=174 Identities=26% Similarity=0.417 Sum_probs=139.0
Q ss_pred CCeEeEEEEecCCCCCCeEEEEeCCCCHhHhCC-CCCCCEEEEECCEecCCCCHHHHHHHhcC---CcEEEEEEEEcCcc
Q psy12296 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIHS---QNIISLKVRSVGMI 78 (433)
Q Consensus 3 ~~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aG-L~~GD~ILaVNG~~V~~~s~~eav~lL~~---g~~V~L~V~R~g~~ 78 (433)
..||||.|-||.+....++|..|.+.|.|+++| |+.||.|+.|+|++|.+.+|.+++.++.. ...|.|+|+|.-..
T Consensus 659 esGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRRkv~~ 738 (984)
T KOG3209|consen 659 ESGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRRKVRT 738 (984)
T ss_pred ccccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEeeeeee
Confidence 469999999999999999999999999999999 99999999999999999999999988853 46799999885311
Q ss_pred cCccccceeeeEeecCCCccCCCCCCCCccceEEeeCCCCCCCceeecCC-CCCCceEEEEECCCChhhhcC-CCCCCEE
Q psy12296 79 PTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVPPHGKLGCGICKGP-QWKPGIFVQFTKDACVAKDAG-LKCGDQI 156 (433)
Q Consensus 79 ~~~~~~~~~sv~l~~~p~s~~~~~~~~~~~~v~L~~~~~~~LG~~l~gg~-~~~~GV~V~~V~~gspA~~aG-L~~GD~I 156 (433)
..+.+ .|.. .........|.|+.....+|||.|--.. ....| |..|.+||||+++| |++||+|
T Consensus 739 ~~~~r----------sp~~---s~~~~~~yDV~lhR~ENeGFGFVi~sS~~kp~sg--iGrIieGSPAdRCgkLkVGDri 803 (984)
T KOG3209|consen 739 GPARR----------SPRN---SAAPSGPYDVVLHRKENEGFGFVIMSSQNKPESG--IGRIIEGSPADRCGKLKVGDRI 803 (984)
T ss_pred ccccC----------Cccc---ccCCCCCeeeEEecccCCceeEEEEecccCCCCC--ccccccCChhHhhccccccceE
Confidence 00000 0000 0011123467788888999999875321 22344 89999999999998 9999999
Q ss_pred EEEccEecCChhhHHHHHHHhcCC-CeEEEEEEECCe
Q psy12296 157 LACNGVKFSPDVTFEHAVSVMKSS-CLLELLVHRGVG 192 (433)
Q Consensus 157 l~ING~~v~s~~s~~eav~~Lr~~-~~v~L~V~R~~~ 192 (433)
++|||+++. .++|.+.|++|+.+ -.|+|+|.-.+.
T Consensus 804 lAVNG~sI~-~lsHadiv~LIKdaGlsVtLtIip~ee 839 (984)
T KOG3209|consen 804 LAVNGQSIL-NLSHADIVSLIKDAGLSVTLTIIPPEE 839 (984)
T ss_pred EEecCeeee-ccCchhHHHHHHhcCceEEEEEcChhc
Confidence 999999999 99999999999987 689999876643
No 3
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=99.75 E-value=5.5e-17 Score=169.38 Aligned_cols=173 Identities=26% Similarity=0.350 Sum_probs=123.5
Q ss_pred CeEeEEEEe---------cCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHH-HHHHHhcCCcEEEEEEE
Q psy12296 4 GTLGFSIRG---------GREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHS-EVLQLIHSQNIISLKVR 73 (433)
Q Consensus 4 ~gLGfsI~g---------G~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~-eav~lL~~g~~V~L~V~ 73 (433)
+.||+.+.. |+....|++|..|.++|||+++||++||+|++|||+.+.++.+. .++.....++.|+|+|.
T Consensus 234 ~~lGi~~~~~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~ 313 (428)
T TIGR02037 234 GWLGVTIQEVTSDLAKSLGLEKQRGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGIL 313 (428)
T ss_pred CcCceEeecCCHHHHHHcCCCCCCceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEE
Confidence 356777665 22335799999999999999999999999999999999987542 22333344789999999
Q ss_pred EcCcccCccccceeeeEeecCCCccCCCCCCCCccceEEeeCCCCCCCceeec----------CCCCCCceEEEEECCCC
Q psy12296 74 SVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVPPHGKLGCGICK----------GPQWKPGIFVQFTKDAC 143 (433)
Q Consensus 74 R~g~~~~~~~~~~~sv~l~~~p~s~~~~~~~~~~~~v~L~~~~~~~LG~~l~g----------g~~~~~GV~V~~V~~gs 143 (433)
|++. ...+.+++...+..... . ....+|+.+.. .+....|++|..|.+++
T Consensus 314 R~g~------~~~~~v~l~~~~~~~~~----~----------~~~~lGi~~~~l~~~~~~~~~l~~~~~Gv~V~~V~~~S 373 (428)
T TIGR02037 314 RKGK------EKTITVTLGASPEEQAS----S----------SNPFLGLTVANLSPEIRKELRLKGDVKGVVVTKVVSGS 373 (428)
T ss_pred ECCE------EEEEEEEECcCCCcccc----c----------cccccceEEecCCHHHHHHcCCCcCcCceEEEEeCCCC
Confidence 9872 23334443332211100 0 11123332221 01223699999999999
Q ss_pred hhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeeee
Q psy12296 144 VAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLF 196 (433)
Q Consensus 144 pA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~~ 196 (433)
+|+++||++||+|++|||+++.+..++.++++..+.++.+.|+|.|++...++
T Consensus 374 pA~~aGL~~GDvI~~Ing~~V~s~~d~~~~l~~~~~g~~v~l~v~R~g~~~~~ 426 (428)
T TIGR02037 374 PAARAGLQPGDVILSVNQQPVSSVAELRKVLDRAKKGGRVALLILRGGATIFV 426 (428)
T ss_pred HHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEE
Confidence 99999999999999999999997777777777666678999999999876554
No 4
>PRK10942 serine endoprotease; Provisional
Probab=99.71 E-value=1.3e-15 Score=160.97 Aligned_cols=170 Identities=22% Similarity=0.283 Sum_probs=119.3
Q ss_pred CeEeEEEEe---------cCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHh---cCCcEEEEE
Q psy12296 4 GTLGFSIRG---------GREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI---HSQNIISLK 71 (433)
Q Consensus 4 ~gLGfsI~g---------G~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL---~~g~~V~L~ 71 (433)
+.||+.+.. +++...|++|..|.++|+|+++||+.||+|++|||+.+.++.+ +...+ ..++.+.|+
T Consensus 288 g~lGv~~~~l~~~~a~~~~l~~~~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~d--l~~~l~~~~~g~~v~l~ 365 (473)
T PRK10942 288 GELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAA--LRAQVGTMPVGSKLTLG 365 (473)
T ss_pred ceeeeEeeecCHHHHHhcCCCCCCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEE
Confidence 356777653 2344579999999999999999999999999999999999743 43333 347889999
Q ss_pred EEEcCcccCccccceeeeEeecCCCccCCCCCCCCccceEEeeCCCCCCCceeecC--CCCCCceEEEEECCCChhhhcC
Q psy12296 72 VRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVPPHGKLGCGICKG--PQWKPGIFVQFTKDACVAKDAG 149 (433)
Q Consensus 72 V~R~g~~~~~~~~~~~sv~l~~~p~s~~~~~~~~~~~~v~L~~~~~~~LG~~l~gg--~~~~~GV~V~~V~~gspA~~aG 149 (433)
|.|++. ...+.+++...+.... . .....+|+....- .....|++|..|.++++|+++|
T Consensus 366 v~R~G~------~~~v~v~l~~~~~~~~--~------------~~~~~lGl~g~~l~~~~~~~gvvV~~V~~~S~A~~aG 425 (473)
T PRK10942 366 LLRDGK------PVNVNVELQQSSQNQV--D------------SSNIFNGIEGAELSNKGGDKGVVVDNVKPGTPAAQIG 425 (473)
T ss_pred EEECCe------EEEEEEEeCcCccccc--c------------cccccccceeeecccccCCCCeEEEEeCCCChHHHcC
Confidence 999872 2334443322111000 0 0011133321100 0112589999999999999999
Q ss_pred CCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeeeec
Q psy12296 150 LKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLFP 197 (433)
Q Consensus 150 L~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~~~ 197 (433)
|++||+|++|||+++.+..++.++++. ....+.|+|.|++...++.
T Consensus 426 L~~GDvIv~VNg~~V~s~~dl~~~l~~--~~~~v~l~V~R~g~~~~v~ 471 (473)
T PRK10942 426 LKKGDVIIGANQQPVKNIAELRKILDS--KPSVLALNIQRGDSSIYLL 471 (473)
T ss_pred CCCCCEEEEECCEEcCCHHHHHHHHHh--CCCeEEEEEEECCEEEEEE
Confidence 999999999999999977777666655 2278999999999876654
No 5
>PRK10139 serine endoprotease; Provisional
Probab=99.70 E-value=1.6e-15 Score=159.58 Aligned_cols=172 Identities=22% Similarity=0.317 Sum_probs=118.9
Q ss_pred CeEeEEEEe---------cCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHh---cCCcEEEEE
Q psy12296 4 GTLGFSIRG---------GREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI---HSQNIISLK 71 (433)
Q Consensus 4 ~gLGfsI~g---------G~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL---~~g~~V~L~ 71 (433)
+-||+.+.. |++...|++|..|.++|||+++||++||+|++|||+++.++.+ +...+ +.++.+.|+
T Consensus 267 ~~LGv~~~~l~~~~~~~lgl~~~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~d--l~~~l~~~~~g~~v~l~ 344 (455)
T PRK10139 267 GLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSFAE--LRSRIATTEPGTKVKLG 344 (455)
T ss_pred cceeEEEEECCHHHHHhcCCCCCCceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEE
Confidence 457877654 2344579999999999999999999999999999999999844 44443 347889999
Q ss_pred EEEcCcccCccccceeeeEeecCCCccCCCCCCCCccceEEeeCCCCCCCceeecC--CCCCCceEEEEECCCChhhhcC
Q psy12296 72 VRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVPPHGKLGCGICKG--PQWKPGIFVQFTKDACVAKDAG 149 (433)
Q Consensus 72 V~R~g~~~~~~~~~~~sv~l~~~p~s~~~~~~~~~~~~v~L~~~~~~~LG~~l~gg--~~~~~GV~V~~V~~gspA~~aG 149 (433)
|.|++. ...+++++...+..... .. .+ .+ ...|+.+... .....|++|..|.++++|+++|
T Consensus 345 V~R~G~------~~~l~v~~~~~~~~~~~--~~------~~--~~-~~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aG 407 (455)
T PRK10139 345 LLRNGK------PLEVEVTLDTSTSSSAS--AE------MI--TP-ALQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAG 407 (455)
T ss_pred EEECCE------EEEEEEEECCCCCcccc--cc------cc--cc-cccccEecccccccCCCceEEEEeCCCChHHHcC
Confidence 999872 23333433221110000 00 00 00 0112222110 1123589999999999999999
Q ss_pred CCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeeee
Q psy12296 150 LKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLF 196 (433)
Q Consensus 150 L~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~~ 196 (433)
|++||+|++|||+++.++.++.++++.. .+.+.|+|.|+++..++
T Consensus 408 L~~GD~I~~Ing~~v~~~~~~~~~l~~~--~~~v~l~v~R~g~~~~~ 452 (455)
T PRK10139 408 LQKDDVIIGVNRDRVNSIAEMRKVLAAK--PAIIALQIVRGNESIYL 452 (455)
T ss_pred CCCCCEEEEECCEEcCCHHHHHHHHHhC--CCeEEEEEEECCEEEEE
Confidence 9999999999999999777777777642 27899999999987655
No 6
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=99.66 E-value=3.2e-15 Score=157.09 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=110.6
Q ss_pred eEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHH-HHHhcCCcEEEEEEEEcCcccCccccceeeeEeecCCCcc
Q psy12296 20 VFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEV-LQLIHSQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSN 98 (433)
Q Consensus 20 v~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~ea-v~lL~~g~~V~L~V~R~g~~~~~~~~~~~sv~l~~~p~s~ 98 (433)
.+|..|.++|||++|||++||+|++|||+++.++.+... +.....++.++++|.|++. .....+++...+...
T Consensus 128 ~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk------~~~~~v~l~~~~~~~ 201 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGS------DQRRDKTLDLRHWAF 201 (449)
T ss_pred ccccccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCc------cceEEEEeccccccc
Confidence 578999999999999999999999999999999854322 2222236789999999873 233333332211110
Q ss_pred CCCCCCCCccceEEeeCCCCCCCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhc
Q psy12296 99 LNQNERFPVVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMK 178 (433)
Q Consensus 99 ~~~~~~~~~~~v~L~~~~~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr 178 (433)
. ... ......+|+... ....+++|..|.++|+|+++||++||+|++|||+++.+..++.+++.. .
T Consensus 202 ~--~~~---------~~~~~~lGl~~~---~~~~~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~~dl~~~l~~-~ 266 (449)
T PRK10779 202 E--PDK---------QDPVSSLGIRPR---GPQIEPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQWQTFVTLVRD-N 266 (449)
T ss_pred C--ccc---------cchhhccccccc---CCCcCcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHh-C
Confidence 0 000 011233555321 112357899999999999999999999999999999966666666654 3
Q ss_pred CCCeEEEEEEECCeeeeecC
Q psy12296 179 SSCLLELLVHRGVGLDLFPG 198 (433)
Q Consensus 179 ~~~~v~L~V~R~~~~~~~~~ 198 (433)
.++.+.++|.|+++...+..
T Consensus 267 ~~~~v~l~v~R~g~~~~~~v 286 (449)
T PRK10779 267 PGKPLALEIERQGSPLSLTL 286 (449)
T ss_pred CCCEEEEEEEECCEEEEEEE
Confidence 34789999999997755543
No 7
>KOG3580|consensus
Probab=99.63 E-value=2.9e-15 Score=155.45 Aligned_cols=189 Identities=24% Similarity=0.384 Sum_probs=132.8
Q ss_pred CCeEeEEEEecCCCCCC------eEEEEeCCCCHhHhCC-CCCCCEEEEECCEecCCCCHHHHHHHhcC-CcEEEEEEEE
Q psy12296 3 NGTLGFSIRGGREHTTG------VFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIHS-QNIISLKVRS 74 (433)
Q Consensus 3 ~~gLGfsI~gG~~~~~G------v~Vs~V~pgSpA~~aG-L~~GD~ILaVNG~~V~~~s~~eav~lL~~-g~~V~L~V~R 74 (433)
..||||.|.||.+++.+ ++|+.|.|||||+ | |+.||+|+.|||+++++..|..++++|+. |+...|+|.|
T Consensus 19 ~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkR 96 (1027)
T KOG3580|consen 19 KRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKR 96 (1027)
T ss_pred CCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecc
Confidence 45899999999997643 9999999999999 6 99999999999999999999999999975 6777888876
Q ss_pred cCcc--cC---------cccc---------ce------------------eeeEeec---CCCcc---------------
Q psy12296 75 VGMI--PT---------KERD---------KS------------------VTWKFVD---TNKSN--------------- 98 (433)
Q Consensus 75 ~g~~--~~---------~~~~---------~~------------------~sv~l~~---~p~s~--------------- 98 (433)
.... +. ..+. .. -+|.-.. .|...
T Consensus 97 prkvqvpa~~asPp~s~~~r~~~ded~~d~Rs~rsg~~~r~~~~s~~grsrsw~~~~er~rP~~R~rsrer~ls~~~~gp 176 (1027)
T KOG3580|consen 97 PRKVQVPALQASPPLSQDDRAFEDEDEFDGRSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSRERDLSRDRRGP 176 (1027)
T ss_pred cceeeccccCCCCCCCCccccccchhccCcccccccccccccccccCCcccccccccccCCccccccccccccccCCCCC
Confidence 4321 00 0000 00 0000000 00000
Q ss_pred -----------CCCC-C--CCCccceEEee-CCCCCCCceeecCCCCCCceEEEEECCCChhhhcC-CCCCCEEEEEccE
Q psy12296 99 -----------LNQN-E--RFPVVPITLEV-PPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAG-LKCGDQILACNGV 162 (433)
Q Consensus 99 -----------~~~~-~--~~~~~~v~L~~-~~~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aG-L~~GD~Il~ING~ 162 (433)
...+ . ......+.|.+ +....+|+.+ ..-|||..+...+.|++.| |+.||+||.|||.
T Consensus 177 rs~~r~~~ss~~~~p~p~~~~~p~kv~LvKsR~nEEyGlrL------gSqIFvKeit~~gLAardgnlqEGDiiLkINGt 250 (1027)
T KOG3580|consen 177 RSRSREHPSSRSPSPEPRGRPGPIKVLLVKSRANEEYGLRL------GSQIFVKEITRTGLAARDGNLQEGDIILKINGT 250 (1027)
T ss_pred cccccccccCCCCCCCccCCCCcceEEEEeeccchhhcccc------cchhhhhhhcccchhhccCCcccccEEEEECcE
Confidence 0000 0 00012233322 3455677766 3468999999888888766 9999999999999
Q ss_pred ecCChhhHHHHHHHhcCC-CeEEEEEEECCeeeeecCCC
Q psy12296 163 KFSPDVTFEHAVSVMKSS-CLLELLVHRGVGLDLFPGGS 200 (433)
Q Consensus 163 ~v~s~~s~~eav~~Lr~~-~~v~L~V~R~~~~~~~~~~~ 200 (433)
... ++++.++-.+|... .++.|+|.|+.+...+...+
T Consensus 251 vte-NmSLtDar~LIEkS~GKL~lvVlRD~~qtLiNiP~ 288 (1027)
T KOG3580|consen 251 VTE-NMSLTDARKLIEKSRGKLQLVVLRDSQQTLINIPS 288 (1027)
T ss_pred eec-cccchhHHHHHHhccCceEEEEEecCCceeeecCC
Confidence 999 99999999998776 79999999998876665543
No 8
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=99.53 E-value=1.8e-13 Score=142.75 Aligned_cols=141 Identities=21% Similarity=0.146 Sum_probs=102.4
Q ss_pred CCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCcEEEEEEEEcCcccCccccceeeeEeecCCCc
Q psy12296 18 TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKS 97 (433)
Q Consensus 18 ~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~g~~V~L~V~R~g~~~~~~~~~~~sv~l~~~p~s 97 (433)
.|.+|..|.++|||++|||++||+|++|||+.+.++.+....-.... ..+.+.+.|++.. ..+.++
T Consensus 128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~~dl~~~ia~~~-~~v~~~I~r~g~~------~~l~v~------- 193 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGFKDVRQQIADIA-GEPMVEILAEREN------WTFEVM------- 193 (420)
T ss_pred CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhhc-ccceEEEEEecCc------eEeccc-------
Confidence 68899999999999999999999999999999999854322211222 5778888886521 111110
Q ss_pred cCCCCCCCCccceEEeeCCCCCCCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHh
Q psy12296 98 NLNQNERFPVVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVM 177 (433)
Q Consensus 98 ~~~~~~~~~~~~v~L~~~~~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~L 177 (433)
+++.. ..+ ..+++|..|.+++||+++||++||+|++|||+++.+..++.++++.
T Consensus 194 ----------------------l~~~~-~~~--~~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~~dl~~~l~~- 247 (420)
T TIGR00054 194 ----------------------KELIP-RGP--KIEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSWTDFVSAVKE- 247 (420)
T ss_pred ----------------------cccee-cCC--CcCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHh-
Confidence 11111 001 2367899999999999999999999999999999966666555554
Q ss_pred cCCCeEEEEEEECCeeeeecC
Q psy12296 178 KSSCLLELLVHRGVGLDLFPG 198 (433)
Q Consensus 178 r~~~~v~L~V~R~~~~~~~~~ 198 (433)
..++.+.++|.|+++...+..
T Consensus 248 ~~~~~v~l~v~R~g~~~~~~v 268 (420)
T TIGR00054 248 NPGKSMDIKVERNGETLSISL 268 (420)
T ss_pred CCCCceEEEEEECCEEEEEEE
Confidence 234679999999997755543
No 9
>KOG3580|consensus
Probab=99.44 E-value=3e-13 Score=140.74 Aligned_cols=169 Identities=24% Similarity=0.335 Sum_probs=118.0
Q ss_pred CeEEEEeCCCCHhHhCC-CCCCCEEEEECCEecCCCCHHHHHHHhcC-CcEEEEEEEEcCcc-----cC-----cccc--
Q psy12296 19 GVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIHS-QNIISLKVRSVGMI-----PT-----KERD-- 84 (433)
Q Consensus 19 Gv~Vs~V~pgSpA~~aG-L~~GD~ILaVNG~~V~~~s~~eav~lL~~-g~~V~L~V~R~g~~-----~~-----~~~~-- 84 (433)
-|||+.|...|.|++.| |+.||+||.|||....+++..++..+|.. ...+.|+|.|+... |. .+..
T Consensus 220 qIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~qtLiNiP~l~d~dSe~~di 299 (1027)
T KOG3580|consen 220 QIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQTLINIPSLNDSDSEIEDI 299 (1027)
T ss_pred hhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCceeeecCCCccccccccch
Confidence 49999999999999999 99999999999999999999999988864 56789999986431 00 0000
Q ss_pred cee---ee----------------------EeecCCCcc----------------------------------------C
Q psy12296 85 KSV---TW----------------------KFVDTNKSN----------------------------------------L 99 (433)
Q Consensus 85 ~~~---sv----------------------~l~~~p~s~----------------------------------------~ 99 (433)
.++ +- .+...|.+. +
T Consensus 300 sEi~tms~rs~spp~rrs~~~s~d~~s~s~h~p~~Ps~r~~~~~R~s~~gat~tPvks~~d~~~~~V~e~t~e~~~~q~p 379 (1027)
T KOG3580|consen 300 SEIETMSDRSFSPPERRSQYSSYDYHSSSEHLPERPSSREDTPSRLSRMGATPTPVKSTGDIAGTVVPETTKEPRYQQEP 379 (1027)
T ss_pred hhhhccccccCCCchhhhhccCccccCchhcCCCCCCccccchhhcccCCCCCCCccCccccCCccccccccCcccccCC
Confidence 000 00 000001000 0
Q ss_pred CCCCCC-C------------------ccceEEeeCCCCCCCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEc
Q psy12296 100 NQNERF-P------------------VVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACN 160 (433)
Q Consensus 100 ~~~~~~-~------------------~~~v~L~~~~~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~IN 160 (433)
.++... . ...-.+......+.|+.++||. +-||||..|.+|+||+..||+.||+||.||
T Consensus 380 ~lP~pk~~~~~~~~pS~~~m~~ygysP~tk~VrF~KGdSvGLRLAGGN--DVGIFVaGvqegspA~~eGlqEGDQIL~VN 457 (1027)
T KOG3580|consen 380 PLPQPKAAPRTFLRPSPEDMAIYGYSPNTKMVRFKKGDSVGLRLAGGN--DVGIFVAGVQEGSPAEQEGLQEGDQILKVN 457 (1027)
T ss_pred CCCCcccCcceeeecCHHHHHHhcCCCCceeEEeecCCeeeeEeccCC--ceeEEEeecccCCchhhccccccceeEEec
Confidence 000000 0 0000112233567899999886 469999999999999999999999999999
Q ss_pred cEecCChhhHHHHHHHhcC---CCeEEEEEEEC
Q psy12296 161 GVKFSPDVTFEHAVSVMKS---SCLLELLVHRG 190 (433)
Q Consensus 161 G~~v~s~~s~~eav~~Lr~---~~~v~L~V~R~ 190 (433)
.+++. +...+|||..|-. ++.|+|+.++.
T Consensus 458 ~vdF~-nl~REeAVlfLL~lPkGEevtilaQ~k 489 (1027)
T KOG3580|consen 458 TVDFR-NLVREEAVLFLLELPKGEEVTILAQSK 489 (1027)
T ss_pred cccch-hhhHHHHHHHHhcCCCCcEEeehhhhh
Confidence 99999 8899999887654 46788776654
No 10
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.37 E-value=1.8e-12 Score=104.21 Aligned_cols=71 Identities=51% Similarity=0.891 Sum_probs=64.5
Q ss_pred CCeEeEEEEecCCCC-CCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CcEEEEEEE
Q psy12296 3 NGTLGFSIRGGREHT-TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS-QNIISLKVR 73 (433)
Q Consensus 3 ~~gLGfsI~gG~~~~-~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~-g~~V~L~V~ 73 (433)
+++|||+|.++.+.. .++||..|.++|+|+++||++||+|++|||+++.++++.+++.+++. +..|+|+|+
T Consensus 9 ~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V~ 81 (81)
T PF00595_consen 9 NGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTVQ 81 (81)
T ss_dssp TSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred CCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEEC
Confidence 679999999987754 69999999999999999999999999999999999999999999986 458888874
No 11
>KOG3605|consensus
Probab=99.36 E-value=2.4e-12 Score=135.22 Aligned_cols=143 Identities=26% Similarity=0.357 Sum_probs=110.0
Q ss_pred CCCeEeEEEEe-cCCCC-CCeEEEEeCCCCHhHhCC-CCCCCEEEEECCEecCCCCHHHHHHHhc---CCcEEEEEEEEc
Q psy12296 2 FNGTLGFSIRG-GREHT-TGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIH---SQNIISLKVRSV 75 (433)
Q Consensus 2 ~~~gLGfsI~g-G~~~~-~Gv~Vs~V~pgSpA~~aG-L~~GD~ILaVNG~~V~~~s~~eav~lL~---~g~~V~L~V~R~ 75 (433)
+++.||+.|+- |-+.- .-|+|..+..+|||+++| |-.||+|++|||.++-++.......+|+ +...|+|.|.+.
T Consensus 655 kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~c 734 (829)
T KOG3605|consen 655 KGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVSC 734 (829)
T ss_pred cCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEecC
Confidence 46789998884 11110 117788999999999999 9999999999999999987765556665 467799998764
Q ss_pred CcccCccccceeeeEeecCCCccCCCCCCCCccceEEeeCCCCCCCceeecCCCCCCceEEEEECCCChhhhcCCCCCCE
Q psy12296 76 GMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQ 155 (433)
Q Consensus 76 g~~~~~~~~~~~sv~l~~~p~s~~~~~~~~~~~~v~L~~~~~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~ 155 (433)
. ...++.+ ..| +.+..|||++ +.|| |.++..|+.|+|.|+|+|.+
T Consensus 735 p--------PV~~V~I-~RP-------------------d~kyQLGFSV------QNGi-ICSLlRGGIAERGGVRVGHR 779 (829)
T KOG3605|consen 735 P--------PVTTVLI-RRP-------------------DLRYQLGFSV------QNGI-ICSLLRGGIAERGGVRVGHR 779 (829)
T ss_pred C--------CceEEEe-ecc-------------------cchhhcccee------eCcE-eehhhcccchhccCceeeee
Confidence 3 2222222 111 2356799998 5675 66777899999999999999
Q ss_pred EEEEccEecCChhhHHHHHHHhcCC
Q psy12296 156 ILACNGVKFSPDVTFEHAVSVMKSS 180 (433)
Q Consensus 156 Il~ING~~v~s~~s~~eav~~Lr~~ 180 (433)
|++|||+.|- ...|+.+|++|...
T Consensus 780 IIEINgQSVV-A~pHekIV~lLs~a 803 (829)
T KOG3605|consen 780 IIEINGQSVV-ATPHEKIVQLLSNA 803 (829)
T ss_pred EEEECCceEE-eccHHHHHHHHHHh
Confidence 9999999999 89999999998765
No 12
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=2.7e-12 Score=133.15 Aligned_cols=174 Identities=20% Similarity=0.205 Sum_probs=120.6
Q ss_pred CCCCCCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCC--CeEEEEEEECCee
Q psy12296 116 PHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS--CLLELLVHRGVGL 193 (433)
Q Consensus 116 ~~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~--~~v~L~V~R~~~~ 193 (433)
...++|+.+... ...++.|.++.+++||+++||++||+|+.|||.++. .++..+++..++.. ..|+|+|.|.+..
T Consensus 98 ~~~GiG~~i~~~--~~~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~-~~~~~~av~~irG~~Gt~V~L~i~r~~~~ 174 (406)
T COG0793 98 EFGGIGIELQME--DIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVG-GVSLDEAVKLIRGKPGTKVTLTILRAGGG 174 (406)
T ss_pred cccceeEEEEEe--cCCCcEEEecCCCChHHHcCCCCCCEEEEECCEEcc-CCCHHHHHHHhCCCCCCeEEEEEEEcCCC
Confidence 345667766532 126889999999999999999999999999999999 88999999999886 6999999997322
Q ss_pred --eeecCCCCCCCCCCCCCCCCCCCC--CccccccceeeEEeeecCCCCCcchhH---HhhhcC----------------
Q psy12296 194 --DLFPGGSSGYNSSTSSLNGDNQDE--PTLVQFKRLSVVKEESVGNGRSNSLED---VTQARA---------------- 250 (433)
Q Consensus 194 --~~~~~~~~~~~~s~ss~~~~~~~s--P~~~~~~r~~~l~~~sf~~~~~~~l~~---~~~~~~---------------- 250 (433)
..+...+..+ ......|. -.+....++.|+++.+|..+....+.. .++...
T Consensus 175 k~~~v~l~Re~i------~l~~v~~~~~~~~~~~~~IGyI~I~~F~~~~~~~~~~al~~L~~~~~~GlIlDLR~N~GG~L 248 (406)
T COG0793 175 KPFTVTLTREEI------ELEDVAAKEKVEEGGKGRIGYIRIPSFGEGTYEDLEKALDELKKQGAKGLILDLRNNPGGLL 248 (406)
T ss_pred ceeEEEEEEEEE------eccceeeeeeeecCCCceEEEEEecccccchHHHHHHHHHHHHhcCCcEEEEEeCCCCCccH
Confidence 2222211111 00111111 111122459999999998865311100 000000
Q ss_pred ---------------------------------------CceeecCCCCCCchhHHHhHHhhh-ccccccCCCccccccc
Q psy12296 251 ---------------------------------------EPRTLHNGGGGASLSSAISEEIKR-RSERLNSGKEFVKVET 290 (433)
Q Consensus 251 ---------------------------------------~~~~l~~~ggg~s~s~~v~~~l~~-~~~~~~~~~~f~~~~~ 290 (433)
..-+++.|+|++|+|++++++||+ ++..|+++++|+||.+
T Consensus 249 ~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~~~~~~PlvvLvn~~SASAsEI~agalqd~~ra~lVG~~TfGkg~v 328 (406)
T COG0793 249 SQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGEALYDGPLVVLVNEGSASASEIFAGALQDYGRATLVGETTFGKGTV 328 (406)
T ss_pred HHHHHHHHcccCCCcEEEEecCCCceeeccccccccCCCCCEEEEECCCCccHHHHHHHHHHHcCCcEEEecccccceEE
Confidence 011777899999999999999998 8999999999999988
Q ss_pred c-ccccccc
Q psy12296 291 T-KNNIEED 298 (433)
Q Consensus 291 ~-r~s~~~~ 298 (433)
| ...|++.
T Consensus 329 Q~~~~L~dg 337 (406)
T COG0793 329 QTLRPLSDG 337 (406)
T ss_pred EeeEEcCCC
Confidence 8 5556443
No 13
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.20 E-value=6.1e-11 Score=95.28 Aligned_cols=78 Identities=33% Similarity=0.504 Sum_probs=68.0
Q ss_pred eEEeeCCCCCCCceeecCCCCC-CceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCC-CeEEEEE
Q psy12296 110 ITLEVPPHGKLGCGICKGPQWK-PGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLELLV 187 (433)
Q Consensus 110 v~L~~~~~~~LG~~l~gg~~~~-~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~-~~v~L~V 187 (433)
+.+.+.....|||.+.++.... .+++|..|.++++|+++||++||+|++|||+++. .+++.+++.+++.+ ..++|+|
T Consensus 2 v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~-~~~~~~~~~~l~~~~~~v~L~V 80 (81)
T PF00595_consen 2 VTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVR-GMSHDEVVQLLKSASNPVTLTV 80 (81)
T ss_dssp EEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEEST-TSBHHHHHHHHHHSTSEEEEEE
T ss_pred EEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCC-CCCHHHHHHHHHCCCCcEEEEE
Confidence 4556667789999998765433 6999999999999999999999999999999999 88999999999987 5888887
Q ss_pred E
Q psy12296 188 H 188 (433)
Q Consensus 188 ~ 188 (433)
+
T Consensus 81 ~ 81 (81)
T PF00595_consen 81 Q 81 (81)
T ss_dssp E
T ss_pred C
Confidence 4
No 14
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.20 E-value=1.5e-10 Score=93.53 Aligned_cols=70 Identities=33% Similarity=0.596 Sum_probs=56.5
Q ss_pred CeEeEEEEecCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHh---cCCcEEEEEEEEcC
Q psy12296 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI---HSQNIISLKVRSVG 76 (433)
Q Consensus 4 ~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL---~~g~~V~L~V~R~g 76 (433)
++||+.+.. .....|++|..|.++|||+++||++||+|++|||+++.+. .++...+ ..++.|+|+|.|++
T Consensus 1 ~~lGv~~~~-~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~~g~~v~l~v~R~g 73 (82)
T PF13180_consen 1 GGLGVTVQN-LSDTGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSS--EDLVNILSKGKPGDTVTLTVLRDG 73 (82)
T ss_dssp -E-SEEEEE-CSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSH--HHHHHHHHCSSTTSEEEEEEEETT
T ss_pred CEECeEEEE-ccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECC
Confidence 468999986 3325799999999999999999999999999999999776 4455555 34899999999987
No 15
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.11 E-value=4.5e-10 Score=87.21 Aligned_cols=67 Identities=48% Similarity=0.765 Sum_probs=59.0
Q ss_pred CeEeEEEEecCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcC--CcEEEEEE
Q psy12296 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS--QNIISLKV 72 (433)
Q Consensus 4 ~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~--g~~V~L~V 72 (433)
.+|||.+..+.+ .+++|..|.++|||+++||++||+|++|||+++.++++.++..+++. ++.|+|+|
T Consensus 1 ~~~G~~~~~~~~--~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 1 GGLGFSIRGGTE--GGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CCccEEEecCCC--CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 368999997443 58999999999999999999999999999999999998889888875 47788776
No 16
>KOG3550|consensus
Probab=99.10 E-value=1.7e-10 Score=102.26 Aligned_cols=73 Identities=32% Similarity=0.660 Sum_probs=67.8
Q ss_pred CCeEeEEEEecCCCCCCeEEEEeCCCCHhHhCC-CCCCCEEEEECCEecCCCCHHHHHHHhcC-CcEEEEEEEEc
Q psy12296 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIHS-QNIISLKVRSV 75 (433)
Q Consensus 3 ~~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aG-L~~GD~ILaVNG~~V~~~s~~eav~lL~~-g~~V~L~V~R~ 75 (433)
..||||.|.||.+....|||+.|.|||.|++.| |+.||++|+|||.+|++..|+.++.+|+. -..|.|+|+..
T Consensus 100 deglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklvvryt 174 (207)
T KOG3550|consen 100 DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLVVRYT 174 (207)
T ss_pred ccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEEEecC
Confidence 579999999999999999999999999999998 99999999999999999999999999986 46789988754
No 17
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=99.07 E-value=8.9e-10 Score=114.06 Aligned_cols=164 Identities=18% Similarity=0.211 Sum_probs=106.6
Q ss_pred CceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCC--CeEEEEEEECCeeeeecCCCCCCCCCCCC
Q psy12296 132 PGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS--CLLELLVHRGVGLDLFPGGSSGYNSSTSS 209 (433)
Q Consensus 132 ~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~--~~v~L~V~R~~~~~~~~~~~~~~~~s~ss 209 (433)
.+++|..|.++|||+++||++||+|++|||+++. ..++.++...++.. ..+.|+|.|++....+...+..+... +
T Consensus 102 ~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~-~~~~~~~~~~l~g~~g~~v~ltv~r~g~~~~~~l~r~~v~~~--~ 178 (389)
T PLN00049 102 AGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTE-GLSLYEAADRLQGPEGSSVELTLRRGPETRLVTLTREKVSLN--P 178 (389)
T ss_pred CcEEEEEeCCCChHHHcCCCCCCEEEEECCEECC-CCCHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEeeeEecc--c
Confidence 3799999999999999999999999999999998 56677777777643 78999999988754443322211100 0
Q ss_pred CCCCCCCCC-ccccccceeeEEeeecCCCCC------------------------------c---chhH-Hhh-------
Q psy12296 210 LNGDNQDEP-TLVQFKRLSVVKEESVGNGRS------------------------------N---SLED-VTQ------- 247 (433)
Q Consensus 210 ~~~~~~~sP-~~~~~~r~~~l~~~sf~~~~~------------------------------~---~l~~-~~~------- 247 (433)
......... .-....++.|+++.+|..+.. . .+.. ++.
T Consensus 179 v~~~~~~~~~~~~~~~~IgYi~i~~F~~~~~~~~~~~l~~l~~~~~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~ 258 (389)
T PLN00049 179 VKSRLCEVPGPGAGSPKIGYIKLTTFNQNASSAVKEAIETLRANGVDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYI 258 (389)
T ss_pred eeeEEEeeccccCCCCCEEEEEeccccchhHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEE
Confidence 000000000 000124789999999976321 0 0000 000
Q ss_pred ------------hc------CCceeecCCCCCCchhHHHhHHhhh-ccccccCCCccccccccc-cccccc
Q psy12296 248 ------------AR------AEPRTLHNGGGGASLSSAISEEIKR-RSERLNSGKEFVKVETTK-NNIEED 298 (433)
Q Consensus 248 ------------~~------~~~~~l~~~ggg~s~s~~v~~~l~~-~~~~~~~~~~f~~~~~~r-~s~~~~ 298 (433)
.. ....+++.|++++|+|++++.+|++ ...+++++.+|+|+.++. ..|.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~PvvVLvn~~TaSasEi~a~alk~~~~~~vvG~~T~Gkg~~q~~~~L~dG 329 (389)
T PLN00049 259 ADSRGVRDIYDADGSSAIATSEPLAVLVNKGTASASEILAGALKDNKRAVVLGEPTFGKGLIQSVFELSDG 329 (389)
T ss_pred ecCCCceeEEecCCCccccCCCCEEEEECCCCccHHHHHHHHHhhCCCeEEEecCCcCCcccceeEEeCCC
Confidence 00 0122677899999999999999998 578888989999987664 334433
No 18
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.03 E-value=2.4e-09 Score=85.44 Aligned_cols=72 Identities=40% Similarity=0.673 Sum_probs=61.4
Q ss_pred CeEeEEEEecCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CcEEEEEEEEc
Q psy12296 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS-QNIISLKVRSV 75 (433)
Q Consensus 4 ~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~-g~~V~L~V~R~ 75 (433)
..|||.+..+.....|++|..|.++|+|+++||++||+|++|||+.+.++.+.+....+.. +..+.|++.|.
T Consensus 12 ~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~r~ 84 (85)
T smart00228 12 GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRG 84 (85)
T ss_pred CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence 5799999875443379999999999999999999999999999999999988877777764 45888888774
No 19
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.02 E-value=1.8e-09 Score=86.11 Aligned_cols=70 Identities=46% Similarity=0.868 Sum_probs=60.3
Q ss_pred CCeEeEEEEecCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CcEEEEEE
Q psy12296 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS-QNIISLKV 72 (433)
Q Consensus 3 ~~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~-g~~V~L~V 72 (433)
.++|||.+.++.+...|++|..|.++|+|+++||++||+|++|||+++.+++..++..+++. ...++|+|
T Consensus 11 ~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 11 GGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred CCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence 47899999986554578999999999999999999999999999999998888889988876 34666665
No 20
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.01 E-value=2.4e-09 Score=86.42 Aligned_cols=77 Identities=26% Similarity=0.214 Sum_probs=61.0
Q ss_pred CCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeeeec
Q psy12296 120 LGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLFP 197 (433)
Q Consensus 120 LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~~~ 197 (433)
||+.+..... ..|++|..|.+++||+++||++||+|++|||+++.+..++..++...+.++.+.|+|.|+++...+.
T Consensus 3 lGv~~~~~~~-~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~ 79 (82)
T PF13180_consen 3 LGVTVQNLSD-TGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLRDGEELTVE 79 (82)
T ss_dssp -SEEEEECSC-SSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEETTEEEEEE
T ss_pred ECeEEEEccC-CCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEE
Confidence 5666543221 3589999999999999999999999999999999867777777765566699999999999876553
No 21
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.97 E-value=7.7e-09 Score=83.30 Aligned_cols=69 Identities=25% Similarity=0.557 Sum_probs=59.9
Q ss_pred CeEeEEEEecCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcC--CcEEEEEEEEc
Q psy12296 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS--QNIISLKVRSV 75 (433)
Q Consensus 4 ~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~--g~~V~L~V~R~ 75 (433)
++||+.+.. + ..+++|..|.++|+|+++||++||+|++|||+.+.++++.++...+.. +..+.|+|.|.
T Consensus 2 ~~lG~~~~~--~-~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKY--D-DGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEE--c-CCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 579999874 2 368999999999999999999999999999999999977777777753 67899999886
No 22
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.96 E-value=2e-09 Score=117.62 Aligned_cols=166 Identities=12% Similarity=0.101 Sum_probs=109.0
Q ss_pred CCCCceeecCCCCCCceEEEEECCCChhhhc-CCCCCCEEEEEc--cE---ecCChhhHHHHHHHhcCC--CeEEEEEEE
Q psy12296 118 GKLGCGICKGPQWKPGIFVQFTKDACVAKDA-GLKCGDQILACN--GV---KFSPDVTFEHAVSVMKSS--CLLELLVHR 189 (433)
Q Consensus 118 ~~LG~~l~gg~~~~~GV~V~~V~~gspA~~a-GL~~GD~Il~IN--G~---~v~s~~s~~eav~~Lr~~--~~v~L~V~R 189 (433)
.++|+.+.. . ..+++|..|.+||||+++ ||++||+|++|| |. ++. ++.+++++.+|++. ..|.|+|.|
T Consensus 244 ~GIGa~l~~--~-~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~-g~~~~~vv~lirG~~Gt~V~LtV~r 319 (667)
T PRK11186 244 EGIGAVLQM--D-DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVI-GWRLDDVVALIKGPKGSKVRLEILP 319 (667)
T ss_pred eEEEEEEEE--e-CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccc-cCCHHHHHHHhcCCCCCEEEEEEEe
Confidence 345665542 1 346899999999999998 899999999999 43 444 67888999999875 789999998
Q ss_pred CC---eeeeecCCCCCCCCCCCCCCCCCCCCCccc--cccceeeEEeeecCCCCC-------------------------
Q psy12296 190 GV---GLDLFPGGSSGYNSSTSSLNGDNQDEPTLV--QFKRLSVVKEESVGNGRS------------------------- 239 (433)
Q Consensus 190 ~~---~~~~~~~~~~~~~~s~ss~~~~~~~sP~~~--~~~r~~~l~~~sf~~~~~------------------------- 239 (433)
++ ....+...+..+.. ........+. ...++.|+++.+|..+..
T Consensus 320 ~~~~~~~~~vtl~R~~i~l------~~~~~k~~v~~~~~~kIGYI~I~sF~~~~~~d~~~~l~~l~~~~v~gLIlDLR~N 393 (667)
T PRK11186 320 AGKGTKTRIVTLTRDKIRL------EDRAVKMSVKTVGGEKVGVLDIPGFYVGLTDDVKKQLQKLEKQNVSGIIIDLRGN 393 (667)
T ss_pred CCCCCceEEEEEEeeeecc------cccceEEEEEecCCCcEEEEEecccccchHHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 43 22222221111100 0000000011 136789999999965321
Q ss_pred --cchh------H-Hhhhc------------------------CCceeecCCCCCCchhHHHhHHhhh-ccccccCCCcc
Q psy12296 240 --NSLE------D-VTQAR------------------------AEPRTLHNGGGGASLSSAISEEIKR-RSERLNSGKEF 285 (433)
Q Consensus 240 --~~l~------~-~~~~~------------------------~~~~~l~~~ggg~s~s~~v~~~l~~-~~~~~~~~~~f 285 (433)
..+. + ++..+ ....+++.|++++|+|++++++|++ .+..++++++|
T Consensus 394 gGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~~~~~~~~~gPlvVLVN~~SASASEIfA~alqd~~ra~vVG~~T~ 473 (667)
T PRK11186 394 GGGALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSDTDGVVYYKGPLVVLVDRYSASASEIFAAAMQDYGRALIVGEPTF 473 (667)
T ss_pred CCCcHHHHHHHHHHHhcCCceEEEecCCCceeccccCCcccccCCCEEEEeCCCCccHHHHHHHHHHhcCCEEEEeccCC
Confidence 0110 0 11110 0012688899999999999999999 68999999999
Q ss_pred cccccccc
Q psy12296 286 VKVETTKN 293 (433)
Q Consensus 286 ~~~~~~r~ 293 (433)
+||.+|..
T Consensus 474 GKGtvQ~~ 481 (667)
T PRK11186 474 GKGTVQQH 481 (667)
T ss_pred Cccccccc
Confidence 99988753
No 23
>KOG3553|consensus
Probab=98.94 E-value=2.1e-10 Score=94.94 Aligned_cols=72 Identities=32% Similarity=0.600 Sum_probs=63.9
Q ss_pred eEeEEEEecCCC----------CCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCcEEEEEEEE
Q psy12296 5 TLGFSIRGGREH----------TTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNIISLKVRS 74 (433)
Q Consensus 5 gLGfsI~gG~~~----------~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~g~~V~L~V~R 74 (433)
-+||.|-||.+. +.|+||+.|..||||+.|||+.+|.|+.|||-+.+-++|.+++..++....+.+.|.|
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k~~vl~mLVaR 115 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITKEEVLRMLVAR 115 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhHhHHHHHHHHh
Confidence 489999999985 3789999999999999999999999999999999999999999999876666677766
Q ss_pred cC
Q psy12296 75 VG 76 (433)
Q Consensus 75 ~g 76 (433)
.+
T Consensus 116 ~~ 117 (124)
T KOG3553|consen 116 QS 117 (124)
T ss_pred hc
Confidence 44
No 24
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.84 E-value=2.6e-08 Score=79.39 Aligned_cols=77 Identities=38% Similarity=0.538 Sum_probs=62.3
Q ss_pred eEEeeCCCCCCCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCC-CeEEEEE
Q psy12296 110 ITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLELLV 187 (433)
Q Consensus 110 v~L~~~~~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~-~~v~L~V 187 (433)
+.+.......||+.+........|++|..|.++++|+++||++||+|++|||+++. .++++++.+.++.. ..+.|+|
T Consensus 4 ~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~-~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 4 VTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVE-GLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred EEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcC-ccCHHHHHHHHHhCCCeEEEEE
Confidence 33444446789999876543346899999999999999999999999999999999 77889998888775 4666665
No 25
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.83 E-value=1.3e-08 Score=103.31 Aligned_cols=72 Identities=21% Similarity=0.311 Sum_probs=57.0
Q ss_pred CCCCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcC--CCeEEEEEEECCee
Q psy12296 118 GKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKS--SCLLELLVHRGVGL 193 (433)
Q Consensus 118 ~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~--~~~v~L~V~R~~~~ 193 (433)
..+|+.+.. ...+++|..|.+++||+++||++||+|++|||+++. ..+..++...++. +..+.|+|.|++..
T Consensus 51 ~~lG~~~~~---~~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~-~~~~~~~~~~l~~~~g~~v~l~v~R~g~~ 124 (334)
T TIGR00225 51 EGIGIQVGM---DDGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVA-GMSLDDAVALIRGKKGTKVSLEILRAGKS 124 (334)
T ss_pred EEEEEEEEE---ECCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECC-CCCHHHHHHhccCCCCCEEEEEEEeCCCC
Confidence 346666532 134789999999999999999999999999999998 5456677777654 37899999998743
No 26
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.79 E-value=5e-08 Score=77.71 Aligned_cols=66 Identities=23% Similarity=0.398 Sum_probs=54.1
Q ss_pred EeEEEEecCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCcEEEEEEEEcC
Q psy12296 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNIISLKVRSVG 76 (433)
Q Consensus 6 LGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~g~~V~L~V~R~g 76 (433)
||+.+.. ...+++|..|.++|+|+++||++||+|++|||+++.++ .+++..+..+..+.+++.|++
T Consensus 3 ~G~~~~~---~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~~--~~~l~~~~~~~~v~l~v~r~g 68 (80)
T cd00990 3 LGLTLDK---EEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDAL--QDRLKEYQAGDPVELTVFRDD 68 (80)
T ss_pred ccEEEEc---cCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHHH--HHHHHhcCCCCEEEEEEEECC
Confidence 6777753 24579999999999999999999999999999999874 345555555778999999876
No 27
>KOG3550|consensus
Probab=98.78 E-value=1.9e-08 Score=89.39 Aligned_cols=74 Identities=30% Similarity=0.431 Sum_probs=67.5
Q ss_pred CCCCCCceeecCCCCCCceEEEEECCCChhhhcC-CCCCCEEEEEccEecCChhhHHHHHHHhcCC-CeEEEEEEEC
Q psy12296 116 PHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAG-LKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLELLVHRG 190 (433)
Q Consensus 116 ~~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aG-L~~GD~Il~ING~~v~s~~s~~eav~~Lr~~-~~v~L~V~R~ 190 (433)
...+|||.+-||.....+|||+.|.||+.|++.| |+.||++++|||+++. +..|+.|+++|+.. ..+.|+|+..
T Consensus 99 tdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsve-ge~hekavellkaa~gsvklvvryt 174 (207)
T KOG3550|consen 99 TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE-GEHHEKAVELLKAAVGSVKLVVRYT 174 (207)
T ss_pred cccccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeec-chhhHHHHHHHHHhcCcEEEEEecC
Confidence 3577999999999888999999999999999865 9999999999999999 99999999999987 7899988654
No 28
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.77 E-value=7.9e-08 Score=76.62 Aligned_cols=79 Identities=34% Similarity=0.428 Sum_probs=61.7
Q ss_pred EEeeCCCCCCCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCC-CeEEEEEEE
Q psy12296 111 TLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLELLVHR 189 (433)
Q Consensus 111 ~L~~~~~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~-~~v~L~V~R 189 (433)
.+.+.. ..+|+.+..+.....|++|..|.++++|+++||++||+|++|||+.+. ..++.+.+..++.. ..+.|++.|
T Consensus 6 ~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~-~~~~~~~~~~~~~~~~~~~l~i~r 83 (85)
T smart00228 6 ELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVE-GLTHLEAVDLLKKAGGKVTLTVLR 83 (85)
T ss_pred EEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECC-CCCHHHHHHHHHhCCCeEEEEEEe
Confidence 334444 678888765432226899999999999999999999999999999999 66667777666654 588898888
Q ss_pred CC
Q psy12296 190 GV 191 (433)
Q Consensus 190 ~~ 191 (433)
++
T Consensus 84 ~~ 85 (85)
T smart00228 84 GG 85 (85)
T ss_pred CC
Confidence 63
No 29
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.76 E-value=6.9e-08 Score=77.48 Aligned_cols=61 Identities=30% Similarity=0.414 Sum_probs=51.5
Q ss_pred CCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhc---CCcEEEEEEEEcC
Q psy12296 14 REHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH---SQNIISLKVRSVG 76 (433)
Q Consensus 14 ~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~---~g~~V~L~V~R~g 76 (433)
.+...|++|..|.++|+|+++||++||+|++|||+++.++. ++...+. .+..+.+++.|++
T Consensus 6 ~~~~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~~--d~~~~l~~~~~g~~v~l~v~r~g 69 (79)
T cd00991 6 AEAVAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTLE--DFMEALKPTKPGEVITVTVLPST 69 (79)
T ss_pred cccCCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCHH--HHHHHHhcCCCCCEEEEEEEECC
Confidence 45567999999999999999999999999999999999874 4555544 2678999999876
No 30
>KOG3551|consensus
Probab=98.76 E-value=6.6e-09 Score=104.28 Aligned_cols=72 Identities=36% Similarity=0.648 Sum_probs=67.3
Q ss_pred CCeEeEEEEecCCCCCCeEEEEeCCCCHhHhCC-CCCCCEEEEECCEecCCCCHHHHHHHhcC-CcEEEEEEEE
Q psy12296 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIHS-QNIISLKVRS 74 (433)
Q Consensus 3 ~~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aG-L~~GD~ILaVNG~~V~~~s~~eav~lL~~-g~~V~L~V~R 74 (433)
.+||||+|.||.++.+.|+|++|.+|=.|++.+ |..||.||+|||.++.+.+|.++++.|+. |+.|.+.|..
T Consensus 95 ~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~levKy 168 (506)
T KOG3551|consen 95 AGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLEVKY 168 (506)
T ss_pred CCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeeeeee
Confidence 479999999999999999999999999999999 99999999999999999999999999975 8888887753
No 31
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.76 E-value=7.4e-08 Score=77.31 Aligned_cols=66 Identities=20% Similarity=0.157 Sum_probs=55.0
Q ss_pred CCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeeee
Q psy12296 131 KPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLF 196 (433)
Q Consensus 131 ~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~~ 196 (433)
..|++|..|.++++|+++||++||+|++|||+++.+..++.+++...+.+..+.|++.|+++...+
T Consensus 9 ~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~~d~~~~l~~~~~g~~v~l~v~r~g~~~~~ 74 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTLEDFMEALKPTKPGEVITVTVLPSTTKLTN 74 (79)
T ss_pred CCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCHHHHHHHHhcCCCCCEEEEEEEECCEEEEE
Confidence 468999999999999999999999999999999996666666665544457899999999876544
No 32
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.70 E-value=8.7e-08 Score=74.24 Aligned_cols=66 Identities=33% Similarity=0.496 Sum_probs=54.6
Q ss_pred CCCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCC--CeEEEEE
Q psy12296 119 KLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS--CLLELLV 187 (433)
Q Consensus 119 ~LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~--~~v~L~V 187 (433)
.+||.+..... .+++|..|.++++|+.+||++||+|++|||+++. ..+++++.+.++.. ..+.|+|
T Consensus 2 ~~G~~~~~~~~--~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~-~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE--GGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVK-NLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCC--CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECC-CCCHHHHHHHHhhCCCCeEEEEE
Confidence 46777764322 4899999999999999999999999999999999 66678888888765 6777765
No 33
>KOG3553|consensus
Probab=98.68 E-value=3.4e-09 Score=87.84 Aligned_cols=60 Identities=35% Similarity=0.501 Sum_probs=55.0
Q ss_pred CCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECC
Q psy12296 131 KPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGV 191 (433)
Q Consensus 131 ~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~ 191 (433)
+.||||+.|.+||||+.+||+.+|.|+.+||.++. ..+|+.|+..++....+.++|.|.+
T Consensus 58 D~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfT-MvTHd~Avk~i~k~~vl~mLVaR~~ 117 (124)
T KOG3553|consen 58 DKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFT-MVTHDQAVKRITKEEVLRMLVARQS 117 (124)
T ss_pred CccEEEEEeccCChhhhhcceecceEEEecCceeE-EEEhHHHHHHhhHhHHHHHHHHhhc
Confidence 46999999999999999999999999999999999 9999999999988777777777763
No 34
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.67 E-value=1.6e-07 Score=74.82 Aligned_cols=71 Identities=28% Similarity=0.317 Sum_probs=57.1
Q ss_pred CCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeeee
Q psy12296 120 LGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLF 196 (433)
Q Consensus 120 LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~~ 196 (433)
+|+.+.. ...+++|..|.++++|+++||++||+|++|||+++. ++.+++..++.+..+.|++.|++....+
T Consensus 3 ~G~~~~~---~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~---~~~~~l~~~~~~~~v~l~v~r~g~~~~~ 73 (80)
T cd00990 3 LGLTLDK---EEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVD---ALQDRLKEYQAGDPVELTVFRDDRLIEV 73 (80)
T ss_pred ccEEEEc---cCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhH---HHHHHHHhcCCCCEEEEEEEECCEEEEE
Confidence 4555531 245799999999999999999999999999999998 3667777665567899999999876544
No 35
>KOG3549|consensus
Probab=98.67 E-value=2.6e-08 Score=98.86 Aligned_cols=72 Identities=33% Similarity=0.670 Sum_probs=68.8
Q ss_pred CCeEeEEEEecCCCCCCeEEEEeCCCCHhHhCC-CCCCCEEEEECCEecCCCCHHHHHHHhcC-CcEEEEEEEE
Q psy12296 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIHS-QNIISLKVRS 74 (433)
Q Consensus 3 ~~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aG-L~~GD~ILaVNG~~V~~~s~~eav~lL~~-g~~V~L~V~R 74 (433)
-||||++|.||.++.-.|+|++|..+-.|+..| |-+||-|+.|||+.|+...|++++++|++ |+.|+|+|..
T Consensus 65 vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVtlTV~~ 138 (505)
T KOG3549|consen 65 VGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEVTLTVKH 138 (505)
T ss_pred cCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEEEEEeHh
Confidence 489999999999999999999999999999999 99999999999999999999999999997 8999999964
No 36
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.60 E-value=4.7e-07 Score=73.30 Aligned_cols=65 Identities=31% Similarity=0.332 Sum_probs=55.1
Q ss_pred CCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeee
Q psy12296 131 KPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDL 195 (433)
Q Consensus 131 ~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~ 195 (433)
..|++|..|.++++|+++||++||+|++|||+++.+..++.+++........+.+.+.|++....
T Consensus 23 ~~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~~~~~~l~~~~~~~~i~l~v~r~g~~~~ 87 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVADLRRALAELKPGDKVTLTVLRGGKELT 87 (90)
T ss_pred CCEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEE
Confidence 45899999999999999999999999999999999777777777655445789999999986543
No 37
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.59 E-value=4.9e-07 Score=71.60 Aligned_cols=67 Identities=30% Similarity=0.497 Sum_probs=52.5
Q ss_pred eEeEEEEecCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcC--CcEEEEEEEEcC
Q psy12296 5 TLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS--QNIISLKVRSVG 76 (433)
Q Consensus 5 gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~--g~~V~L~V~R~g 76 (433)
.|||.... . ...++|..|.++|+|+++||++||+|++|||+++.++. ++...+.. +..+.+++.|++
T Consensus 2 ~~~~~~g~--~-~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~--~~~~~l~~~~~~~~~l~v~r~~ 70 (79)
T cd00989 2 ILGFVPGG--P-PIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSWE--DLVDAVQENPGKPLTLTVERNG 70 (79)
T ss_pred eeeEeccC--C-ccCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCHH--HHHHHHHHCCCceEEEEEEECC
Confidence 35665542 2 24589999999999999999999999999999999873 45555543 578899998866
No 38
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.59 E-value=3.5e-07 Score=73.02 Aligned_cols=56 Identities=32% Similarity=0.548 Sum_probs=47.0
Q ss_pred CCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhc---CCcEEEEEEEEcC
Q psy12296 18 TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH---SQNIISLKVRSVG 76 (433)
Q Consensus 18 ~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~---~g~~V~L~V~R~g 76 (433)
.|++|..|.++|+|+. ||++||+|++|||..+.++. ++..++. .+..+.|++.|.+
T Consensus 8 ~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~~~--~~~~~l~~~~~~~~v~l~v~r~g 66 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKEAE--ELIDYIQSKKEGDTVKLKVKREE 66 (79)
T ss_pred cCEEEEEECCCCchhh-CCCCCCEEEEECCEECCCHH--HHHHHHHhCCCCCEEEEEEEECC
Confidence 5899999999999997 79999999999999999763 3444443 3678999999877
No 39
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.53 E-value=6.6e-07 Score=71.45 Aligned_cols=64 Identities=23% Similarity=0.256 Sum_probs=52.7
Q ss_pred CceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeeee
Q psy12296 132 PGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLF 196 (433)
Q Consensus 132 ~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~~ 196 (433)
.|++|..|.++++|+. ||++||+|++|||.++.+..++.+++.....+..+.|++.|++....+
T Consensus 8 ~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~~~~~~~~l~~~~~~~~v~l~v~r~g~~~~~ 71 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKEAEELIDYIQSKKEGDTVKLKVKREEKELPE 71 (79)
T ss_pred cCEEEEEECCCCchhh-CCCCCCEEEEECCEECCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEE
Confidence 4889999999999986 799999999999999996666666665544457899999999876444
No 40
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.51 E-value=5.4e-07 Score=72.98 Aligned_cols=58 Identities=33% Similarity=0.578 Sum_probs=48.6
Q ss_pred CCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhc---CCcEEEEEEEEcC
Q psy12296 17 TTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH---SQNIISLKVRSVG 76 (433)
Q Consensus 17 ~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~---~g~~V~L~V~R~g 76 (433)
..|++|..|.++|+|+++||++||+|++|||+.+.++.+ +..++. .+..+.|.+.|++
T Consensus 23 ~~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~~--~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVAD--LRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred CCEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECC
Confidence 458999999999999999999999999999999998743 333333 3678999998876
No 41
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.51 E-value=4.8e-07 Score=72.78 Aligned_cols=71 Identities=23% Similarity=0.356 Sum_probs=55.6
Q ss_pred CCCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcC--CCeEEEEEEEC-Cee
Q psy12296 119 KLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKS--SCLLELLVHRG-VGL 193 (433)
Q Consensus 119 ~LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~--~~~v~L~V~R~-~~~ 193 (433)
+||+.+.. ...+++|..|.++++|+++||++||+|++|||+.+. ..++.++...++. +..+.|++.|+ +..
T Consensus 3 ~lG~~~~~---~~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~-~~~~~~~~~~l~~~~~~~i~l~v~r~~~~~ 76 (85)
T cd00988 3 GIGLELKY---DDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVD-GLSLEDVVKLLRGKAGTKVRLTLKRGDGEP 76 (85)
T ss_pred EEEEEEEE---cCCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcC-CCCHHHHHHHhcCCCCCEEEEEEEcCCCCE
Confidence 46666542 246899999999999999999999999999999999 4344666666644 37899999988 543
No 42
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.49 E-value=7.9e-07 Score=90.25 Aligned_cols=70 Identities=24% Similarity=0.426 Sum_probs=59.0
Q ss_pred CeEeEEEEecCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhc--CCcEEEEEEEEcC
Q psy12296 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH--SQNIISLKVRSVG 76 (433)
Q Consensus 4 ~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~--~g~~V~L~V~R~g 76 (433)
.++|+.+.. . ..+++|..|.++|||+++||++||+|++|||+++.+++..++...+. .+..+.|+|.|.+
T Consensus 51 ~~lG~~~~~--~-~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g 122 (334)
T TIGR00225 51 EGIGIQVGM--D-DGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG 122 (334)
T ss_pred EEEEEEEEE--E-CCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence 367888864 2 34799999999999999999999999999999999987666777764 3788999999876
No 43
>KOG1421|consensus
Probab=98.48 E-value=1.3e-06 Score=93.41 Aligned_cols=147 Identities=14% Similarity=0.188 Sum_probs=99.2
Q ss_pred eEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcC--CcEEEEEEEEcCcccCccccceeeeEeecCCCc
Q psy12296 20 VFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS--QNIISLKVRSVGMIPTKERDKSVTWKFVDTNKS 97 (433)
Q Consensus 20 v~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~--g~~V~L~V~R~g~~~~~~~~~~~sv~l~~~p~s 97 (433)
.+|..|.++|+|++. |++||.+++||+..+.++ .++.+++.+ |+.+.|+|+|.+. .+++........
T Consensus 305 LvV~~vL~~gpa~k~-Le~GDillavN~t~l~df--~~l~~iLDegvgk~l~LtI~Rggq--------elel~vtvqdlh 373 (955)
T KOG1421|consen 305 LVVETVLPEGPAEKK-LEPGDILLAVNSTCLNDF--EALEQILDEGVGKNLELTIQRGGQ--------ELELTVTVQDLH 373 (955)
T ss_pred EEEEEeccCCchhhc-cCCCcEEEEEcceehHHH--HHHHHHHhhccCceEEEEEEeCCE--------EEEEEEEecccc
Confidence 567889999999997 999999999998887765 456666654 7899999999882 333333321111
Q ss_pred cCCCCCCCCccceEEeeCC---CCCCCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHH
Q psy12296 98 NLNQNERFPVVPITLEVPP---HGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAV 174 (433)
Q Consensus 98 ~~~~~~~~~~~~v~L~~~~---~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav 174 (433)
............-.++ +. ..++++- + ..|+||++-. |+++++.++. |-+|.+||+.++.+..++.+++
T Consensus 374 ~itp~R~levcGav~h-dlsyq~ar~y~l----P--~~GvyVa~~~-gsf~~~~~~y-~~ii~~vanK~tPdLdaFidvl 444 (955)
T KOG1421|consen 374 GITPDRFLEVCGAVFH-DLSYQLARLYAL----P--VEGVYVASPG-GSFRHRGPRY-GQIIDSVANKPTPDLDAFIDVL 444 (955)
T ss_pred CCCCceEEEEcceEec-CCCHHHHhhccc----c--cCcEEEccCC-CCccccCCcc-eEEEEeecCCcCCCHHHHHHHH
Confidence 1111110000000010 01 1122221 1 2399999877 8999888887 9999999999999999999999
Q ss_pred HHhcCCCeEEEE
Q psy12296 175 SVMKSSCLLELL 186 (433)
Q Consensus 175 ~~Lr~~~~v~L~ 186 (433)
..|..+..|.+.
T Consensus 445 k~L~dg~rV~vr 456 (955)
T KOG1421|consen 445 KELPDGARVPVR 456 (955)
T ss_pred HhccCCCeeeEE
Confidence 999887655553
No 44
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.48 E-value=1.2e-06 Score=90.76 Aligned_cols=73 Identities=22% Similarity=0.327 Sum_probs=59.8
Q ss_pred CeEeEEEEecCCC---CCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhc--CCcEEEEEEEEcC
Q psy12296 4 GTLGFSIRGGREH---TTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH--SQNIISLKVRSVG 76 (433)
Q Consensus 4 ~gLGfsI~gG~~~---~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~--~g~~V~L~V~R~g 76 (433)
.|+|+.+.-.... ..|++|..|.++|||+++||++||+|++|||++|.+++..++..+++ .+..|.|+|.|.+
T Consensus 85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g 162 (389)
T PLN00049 85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP 162 (389)
T ss_pred eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence 4788887642211 13899999999999999999999999999999999987777777775 3678999999876
No 45
>KOG3551|consensus
Probab=98.46 E-value=1.8e-07 Score=94.23 Aligned_cols=81 Identities=28% Similarity=0.322 Sum_probs=73.6
Q ss_pred ccceEEeeCCCCCCCceeecCCCCCCceEEEEECCCChhhhcC-CCCCCEEEEEccEecCChhhHHHHHHHhcCC-CeEE
Q psy12296 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAG-LKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLE 184 (433)
Q Consensus 107 ~~~v~L~~~~~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aG-L~~GD~Il~ING~~v~s~~s~~eav~~Lr~~-~~v~ 184 (433)
...|.+.+...++|||+|.||.+...+|+|+.+.+|-+|++.+ |..||.|++|||.++. ..+|+|||+.|+.. +.|.
T Consensus 85 ~R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~-~AtHdeAVqaLKraGkeV~ 163 (506)
T KOG3551|consen 85 ERRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLR-DATHDEAVQALKRAGKEVL 163 (506)
T ss_pred cceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhh-hcchHHHHHHHHhhCceee
Confidence 4678888889999999999999989999999999999999988 9999999999999999 99999999999886 6677
Q ss_pred EEEE
Q psy12296 185 LLVH 188 (433)
Q Consensus 185 L~V~ 188 (433)
|.|+
T Consensus 164 levK 167 (506)
T KOG3551|consen 164 LEVK 167 (506)
T ss_pred eeee
Confidence 7664
No 46
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.43 E-value=1.1e-06 Score=86.30 Aligned_cols=72 Identities=22% Similarity=0.300 Sum_probs=57.9
Q ss_pred eEeEEEEecCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCH-HHHHHHhcCCcEEEEEEEEcC
Q psy12296 5 TLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATH-SEVLQLIHSQNIISLKVRSVG 76 (433)
Q Consensus 5 gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~-~eav~lL~~g~~V~L~V~R~g 76 (433)
.+|+...--.+...|+.|..+.++++|+++||+.||+|++|||+++.++.. .+++..++.++.++|+|.|++
T Consensus 178 ~lgi~p~~~~g~~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R~G 250 (259)
T TIGR01713 178 YIRLSPVMKNDKLEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDPEQAFQALQMLREETNLTLTVERDG 250 (259)
T ss_pred eEeEEEEEeCCceeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEECC
Confidence 467765542233479999999999999999999999999999999999744 234455556789999999988
No 47
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.42 E-value=2.7e-06 Score=67.26 Aligned_cols=63 Identities=30% Similarity=0.211 Sum_probs=50.6
Q ss_pred CceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeee
Q psy12296 132 PGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDL 195 (433)
Q Consensus 132 ~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~ 195 (433)
..++|..|.++++|+++||++||+|++|||+++.+..++..++... .+..+.+++.|++....
T Consensus 12 ~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~l~~~-~~~~~~l~v~r~~~~~~ 74 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSWEDLVDAVQEN-PGKPLTLTVERNGETIT 74 (79)
T ss_pred cCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHHC-CCceEEEEEEECCEEEE
Confidence 3578999999999999999999999999999999665555555442 24688999999876433
No 48
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.38 E-value=1.5e-06 Score=85.44 Aligned_cols=66 Identities=23% Similarity=0.245 Sum_probs=59.7
Q ss_pred CCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeeee
Q psy12296 131 KPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLF 196 (433)
Q Consensus 131 ~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~~ 196 (433)
..|+.|..+.++++|+++||++||+|++|||+++.+..++.+++..++....+.|+|.|+++...+
T Consensus 190 ~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R~G~~~~i 255 (259)
T TIGR01713 190 LEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDPEQAFQALQMLREETNLTLTVERDGQREDI 255 (259)
T ss_pred eeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEECCEEEEE
Confidence 469999999999999999999999999999999998888888888887778999999999976544
No 49
>KOG3549|consensus
Probab=98.38 E-value=7.5e-07 Score=88.69 Aligned_cols=83 Identities=23% Similarity=0.303 Sum_probs=75.6
Q ss_pred CCccceEEeeCCCCCCCceeecCCCCCCceEEEEECCCChhhhcC-CCCCCEEEEEccEecCChhhHHHHHHHhcCC-Ce
Q psy12296 105 FPVVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAG-LKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CL 182 (433)
Q Consensus 105 ~~~~~v~L~~~~~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aG-L~~GD~Il~ING~~v~s~~s~~eav~~Lr~~-~~ 182 (433)
..+..+++..+..++||++|.||.+..-+|+|+.+..+-+|+..| |-.||.|+.|||+.+. .+.|+|+|..||+. +.
T Consensus 53 s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~-~c~HeevV~iLRNAGde 131 (505)
T KOG3549|consen 53 SKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVT-ACPHEEVVNILRNAGDE 131 (505)
T ss_pred CCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEee-cCChHHHHHHHHhcCCE
Confidence 345678888899999999999998878899999999999999988 8999999999999999 99999999999997 78
Q ss_pred EEEEEE
Q psy12296 183 LELLVH 188 (433)
Q Consensus 183 v~L~V~ 188 (433)
|+|+|.
T Consensus 132 VtlTV~ 137 (505)
T KOG3549|consen 132 VTLTVK 137 (505)
T ss_pred EEEEeH
Confidence 999885
No 50
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=2.1e-06 Score=89.42 Aligned_cols=71 Identities=28% Similarity=0.461 Sum_probs=62.6
Q ss_pred CeEeEEEEecCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcC--CcEEEEEEEEcC
Q psy12296 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS--QNIISLKVRSVG 76 (433)
Q Consensus 4 ~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~--g~~V~L~V~R~g 76 (433)
+|+|+.|.- ....++.|..+.+++||+++||++||+|++|||+++.+++..+++..++. |..|+|+|.|.+
T Consensus 100 ~GiG~~i~~--~~~~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~ 172 (406)
T COG0793 100 GGIGIELQM--EDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAG 172 (406)
T ss_pred cceeEEEEE--ecCCCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcC
Confidence 578888885 22268999999999999999999999999999999999988889988875 889999999963
No 51
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.33 E-value=2.7e-06 Score=87.11 Aligned_cols=72 Identities=22% Similarity=0.408 Sum_probs=56.1
Q ss_pred eEeEEEEe---------cCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHH-HHHHHhcCCcEEEEEEEE
Q psy12296 5 TLGFSIRG---------GREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHS-EVLQLIHSQNIISLKVRS 74 (433)
Q Consensus 5 gLGfsI~g---------G~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~-eav~lL~~g~~V~L~V~R 74 (433)
.||+.+.. |++...|++|..|.++|||+++||++||+|++|||+++.++.+. +++...+.++.+.|+|.|
T Consensus 256 ~lGv~~~~~~~~~~~~lgl~~~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~dl~~~l~~~~~g~~v~l~v~R 335 (351)
T TIGR02038 256 YIGVSGEDINSVVAQGLGLPDLRGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAEELMDRIAETRPGSKVMVTVLR 335 (351)
T ss_pred EeeeEEEECCHHHHHhcCCCccccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEE
Confidence 46776653 23334699999999999999999999999999999999987432 233333457889999999
Q ss_pred cC
Q psy12296 75 VG 76 (433)
Q Consensus 75 ~g 76 (433)
++
T Consensus 336 ~g 337 (351)
T TIGR02038 336 QG 337 (351)
T ss_pred CC
Confidence 87
No 52
>PRK10898 serine endoprotease; Provisional
Probab=98.33 E-value=3e-06 Score=86.88 Aligned_cols=60 Identities=25% Similarity=0.410 Sum_probs=50.3
Q ss_pred CCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCH-HHHHHHhcCCcEEEEEEEEcC
Q psy12296 17 TTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATH-SEVLQLIHSQNIISLKVRSVG 76 (433)
Q Consensus 17 ~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~-~eav~lL~~g~~V~L~V~R~g 76 (433)
..|++|..|.++|||+++||++||+|++|||+++.++.+ .+++...+.++.+.|+|.|++
T Consensus 278 ~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R~g 338 (353)
T PRK10898 278 LQGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMRDD 338 (353)
T ss_pred CCeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 479999999999999999999999999999999998743 233333345788999999977
No 53
>KOG1892|consensus
Probab=98.26 E-value=1.4e-06 Score=95.62 Aligned_cols=75 Identities=25% Similarity=0.511 Sum_probs=65.2
Q ss_pred CCCeEeEEEEecCC---CCCCeEEEEeCCCCHhHhCC-CCCCCEEEEECCEecCCCCHHHHHHHhc-CCcEEEEEEEEcC
Q psy12296 2 FNGTLGFSIRGGRE---HTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIH-SQNIISLKVRSVG 76 (433)
Q Consensus 2 ~~~gLGfsI~gG~~---~~~Gv~Vs~V~pgSpA~~aG-L~~GD~ILaVNG~~V~~~s~~eav~lL~-~g~~V~L~V~R~g 76 (433)
+|+|.|++|+...+ ...||||+.|.+|++|+.+| |+.||++|+|||..+-+.+++.+..++. .|..|+|.|...+
T Consensus 941 KnnGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~leVaKqg 1020 (1629)
T KOG1892|consen 941 KNNGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNVVHLEVAKQG 1020 (1629)
T ss_pred ccCCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCeEEEehhhhh
Confidence 47899999987433 24699999999999999999 9999999999999999999988888775 4899999997544
No 54
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.14 E-value=9.8e-06 Score=82.99 Aligned_cols=67 Identities=18% Similarity=0.148 Sum_probs=58.3
Q ss_pred CCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeeeec
Q psy12296 131 KPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLFP 197 (433)
Q Consensus 131 ~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~~~ 197 (433)
..|++|..|.+++||+++||++||+|++|||+++.+..++.+++...+.++.+.|+|.|+++...+.
T Consensus 277 ~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~ 343 (351)
T TIGR02038 277 LRGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAEELMDRIAETRPGSKVMVTVLRQGKQLELP 343 (351)
T ss_pred cccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEE
Confidence 3689999999999999999999999999999999977777777776666789999999998765554
No 55
>PRK10898 serine endoprotease; Provisional
Probab=98.13 E-value=1.3e-05 Score=82.17 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=58.4
Q ss_pred CCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeeeec
Q psy12296 131 KPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLFP 197 (433)
Q Consensus 131 ~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~~~ 197 (433)
..|++|..|.+++||+++||++||+|++|||+++.+..++.+++...+.+..+.|+|.|+++...+.
T Consensus 278 ~~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~ 344 (353)
T PRK10898 278 LQGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQ 344 (353)
T ss_pred CCeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEE
Confidence 4699999999999999999999999999999999977777777776666688999999998765553
No 56
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.13 E-value=1.1e-05 Score=84.66 Aligned_cols=67 Identities=27% Similarity=0.310 Sum_probs=58.3
Q ss_pred CCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeeeec
Q psy12296 131 KPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLFP 197 (433)
Q Consensus 131 ~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~~~ 197 (433)
..|++|..|.+++||+++||++||+|++|||+.+.+..++.+++.....+..+.|+|.|++....+.
T Consensus 256 ~~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~ 322 (428)
T TIGR02037 256 QRGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKEKTIT 322 (428)
T ss_pred CCceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEE
Confidence 4689999999999999999999999999999999977777777776666689999999998775443
No 57
>PRK10139 serine endoprotease; Provisional
Probab=98.12 E-value=1.3e-05 Score=84.89 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=57.7
Q ss_pred CCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeeeecC
Q psy12296 131 KPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLFPG 198 (433)
Q Consensus 131 ~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~~~~ 198 (433)
..|++|..|.++|+|+++||++||+|++|||+++.++.++..++...+.++.+.|+|.|+++...+..
T Consensus 289 ~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v 356 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEV 356 (455)
T ss_pred CCceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEE
Confidence 46999999999999999999999999999999999777777666655556789999999997755543
No 58
>KOG1421|consensus
Probab=98.11 E-value=3.7e-05 Score=82.59 Aligned_cols=164 Identities=18% Similarity=0.155 Sum_probs=99.1
Q ss_pred eEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCcEEEEEEEEcCcccCccccceeeeEeecCCCccC
Q psy12296 20 VFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNL 99 (433)
Q Consensus 20 v~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~g~~V~L~V~R~g~~~~~~~~~~~sv~l~~~p~s~~ 99 (433)
++|++|.+.-. +- |..||+||+|||+.++.+++.. ... .|.++|.|+| ....+++...|....
T Consensus 773 ~~ishv~~~~~--ki-l~~gdiilsvngk~itr~~dl~--d~~----eid~~ilrdg--------~~~~ikipt~p~~et 835 (955)
T KOG1421|consen 773 YVISHVRPLLH--KI-LGVGDIILSVNGKMITRLSDLH--DFE----EIDAVILRDG--------IEMEIKIPTYPEYET 835 (955)
T ss_pred EEEEeeccCcc--cc-cccccEEEEecCeEEeeehhhh--hhh----hhheeeeecC--------cEEEEEecccccccc
Confidence 77889988654 33 9999999999999999986543 211 4677888887 244444443332210
Q ss_pred CCCCCCCc-cceEEeeCC-CCCCCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHh
Q psy12296 100 NQNERFPV-VPITLEVPP-HGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVM 177 (433)
Q Consensus 100 ~~~~~~~~-~~v~L~~~~-~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~L 177 (433)
.+. ...+-..++ ....=.++ .+-..||||+....||||.+ +|+....|.+|||+.+.+.++|-..+..+
T Consensus 836 -----~r~vi~~gailq~ph~av~~q~---edlp~gvyvt~rg~gspalq-~l~aa~fitavng~~t~~lddf~~~~~~i 906 (955)
T KOG1421|consen 836 -----SRAVIWMGAILQPPHSAVFEQV---EDLPEGVYVTSRGYGSPALQ-MLRAAHFITAVNGHDTNTLDDFYHMLLEI 906 (955)
T ss_pred -----ceEEEEEeccccCchHHHHHHH---hccCCceEEeecccCChhHh-hcchheeEEEecccccCcHHHHHHHHhhC
Confidence 000 000000110 00000011 12257999999999999998 89999999999999999555554444444
Q ss_pred cCCCeEEEEE-EECCeeeeecCCCCCCCCCCCCCCCCCCCCCccc
Q psy12296 178 KSSCLLELLV-HRGVGLDLFPGGSSGYNSSTSSLNGDNQDEPTLV 221 (433)
Q Consensus 178 r~~~~v~L~V-~R~~~~~~~~~~~~~~~~s~ss~~~~~~~sP~~~ 221 (433)
..+..+.+.. .+++.. +.-+...+.+|.|+..
T Consensus 907 pdnsyv~v~~mtfd~vp------------~~~s~k~n~hyfpt~~ 939 (955)
T KOG1421|consen 907 PDNSYVQVKQMTFDGVP------------SIVSVKPNPHYFPTCI 939 (955)
T ss_pred CCCceEEEEEeccCCCc------------eEEEeccCCccCceeE
Confidence 4445555532 233322 3336667777877653
No 59
>PRK10942 serine endoprotease; Provisional
Probab=98.10 E-value=1.5e-05 Score=84.81 Aligned_cols=68 Identities=26% Similarity=0.228 Sum_probs=59.0
Q ss_pred CCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeeeecC
Q psy12296 131 KPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLFPG 198 (433)
Q Consensus 131 ~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~~~~ 198 (433)
..|++|..|.++++|+++||++||+|++|||+.+.+..++..++.....+..+.|+|.|+++...+..
T Consensus 310 ~~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v 377 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNV 377 (473)
T ss_pred CCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEE
Confidence 46999999999999999999999999999999999777777777766666889999999997755543
No 60
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.06 E-value=1.2e-05 Score=88.25 Aligned_cols=69 Identities=17% Similarity=0.307 Sum_probs=56.7
Q ss_pred CeEeEEEEecCCCCCCeEEEEeCCCCHhHhC-CCCCCCEEEEEC--CE---ecCCCCHHHHHHHhcC--CcEEEEEEEEc
Q psy12296 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERS-GLLIGDQIIRIN--GF---PIEDATHSEVLQLIHS--QNIISLKVRSV 75 (433)
Q Consensus 4 ~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~a-GL~~GD~ILaVN--G~---~V~~~s~~eav~lL~~--g~~V~L~V~R~ 75 (433)
+|+|+.+.. + ..+++|..|.+||||+++ ||++||+|++|| |. ++.++...+++.+|+. |..|.|+|.|.
T Consensus 244 ~GIGa~l~~--~-~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 244 EGIGAVLQM--D-DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred eEEEEEEEE--e-CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 467887764 2 247999999999999998 799999999999 43 5566777788999974 88999999884
No 61
>KOG3542|consensus
Probab=98.04 E-value=5.3e-06 Score=88.53 Aligned_cols=71 Identities=34% Similarity=0.599 Sum_probs=65.9
Q ss_pred CeEeEEEEecCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCcEEEEEEEE
Q psy12296 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNIISLKVRS 74 (433)
Q Consensus 4 ~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~g~~V~L~V~R 74 (433)
..|=|.+.||.+.+.||||..|.||+-|++.||+.||+|++|||++.++.+...+..+|++...++|+|..
T Consensus 548 ~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrnnthLtltvKt 618 (1283)
T KOG3542|consen 548 DPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRNNTHLTLTVKT 618 (1283)
T ss_pred CCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcCCceEEEEEec
Confidence 46789999999999999999999999999999999999999999999999999999999988888888764
No 62
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.00 E-value=2.1e-05 Score=82.50 Aligned_cols=57 Identities=30% Similarity=0.455 Sum_probs=49.1
Q ss_pred CCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcC--CcEEEEEEEEcC
Q psy12296 18 TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS--QNIISLKVRSVG 76 (433)
Q Consensus 18 ~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~--g~~V~L~V~R~g 76 (433)
.+++|..|.++|||+++||++||+|++|||+++.++ .++...+.. ++.+.++|.|++
T Consensus 203 ~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g 261 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSW--TDFVSAVKENPGKSMDIKVERNG 261 (420)
T ss_pred cCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCceEEEEEECC
Confidence 478999999999999999999999999999999987 445555543 677999999987
No 63
>KOG3571|consensus
Probab=98.00 E-value=8.1e-06 Score=84.85 Aligned_cols=69 Identities=23% Similarity=0.463 Sum_probs=60.5
Q ss_pred EeEEEEecCCC--CCCeEEEEeCCCCHhHhCC-CCCCCEEEEECCEecCCCCHHHHHHHhcC----CcEEEEEEEE
Q psy12296 6 LGFSIRGGREH--TTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIHS----QNIISLKVRS 74 (433)
Q Consensus 6 LGfsI~gG~~~--~~Gv~Vs~V~pgSpA~~aG-L~~GD~ILaVNG~~V~~~s~~eav~lL~~----g~~V~L~V~R 74 (433)
||++|+|..+. +.||||..|.++|+-+.+| +.+||.||.||.++.++++..+|+..|++ -.+++|+|..
T Consensus 263 LGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk 338 (626)
T KOG3571|consen 263 LGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAK 338 (626)
T ss_pred ceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEee
Confidence 89999994432 4689999999999999999 99999999999999999999999999985 3568888864
No 64
>KOG3651|consensus
Probab=98.00 E-value=1.9e-05 Score=77.62 Aligned_cols=72 Identities=26% Similarity=0.499 Sum_probs=63.7
Q ss_pred CCeEeEEEEecCCCCCCeEEEEeCCCCHhHhCC-CCCCCEEEEECCEecCCCCHHHHHHHhcC-CcEEEEEEEE
Q psy12296 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIHS-QNIISLKVRS 74 (433)
Q Consensus 3 ~~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aG-L~~GD~ILaVNG~~V~~~s~~eav~lL~~-g~~V~L~V~R 74 (433)
.+-+|++|-||......+||..|..++||++.| ++.||.|++|||..|.+.+..++..++.. -+.|++.+..
T Consensus 15 ~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~IhyNK 88 (429)
T KOG3651|consen 15 KNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIHYNK 88 (429)
T ss_pred ccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEEehh
Confidence 456899999999888899999999999999999 99999999999999999998888888875 4567777643
No 65
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.97 E-value=2.9e-05 Score=82.02 Aligned_cols=57 Identities=25% Similarity=0.557 Sum_probs=48.4
Q ss_pred CCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhc--CCcEEEEEEEEcC
Q psy12296 18 TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH--SQNIISLKVRSVG 76 (433)
Q Consensus 18 ~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~--~g~~V~L~V~R~g 76 (433)
.+++|..|.++|||+++||++||+|++|||+++.++. ++...+. .++.+.++|.|++
T Consensus 221 ~~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~~--dl~~~l~~~~~~~v~l~v~R~g 279 (449)
T PRK10779 221 IEPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQWQ--TFVTLVRDNPGKPLALEIERQG 279 (449)
T ss_pred cCcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCHH--HHHHHHHhCCCCEEEEEEEECC
Confidence 3589999999999999999999999999999999874 3444443 3678999999987
No 66
>KOG3542|consensus
Probab=97.95 E-value=1.3e-05 Score=85.66 Aligned_cols=81 Identities=28% Similarity=0.390 Sum_probs=71.1
Q ss_pred ceEEee-CCCCCCCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEE
Q psy12296 109 PITLEV-PPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLV 187 (433)
Q Consensus 109 ~v~L~~-~~~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V 187 (433)
.+.|++ .....+-|.+.||.+...||||..|.+|+.|++.||+.||.|++|||++.. ..++..|.+.|+++..++|+|
T Consensus 538 qviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfe-nis~~KA~eiLrnnthLtltv 616 (1283)
T KOG3542|consen 538 QVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFE-NISAKKAEEILRNNTHLTLTV 616 (1283)
T ss_pred eEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchh-hhhHHHHHHHhcCCceEEEEE
Confidence 355555 334678899999988888999999999999999999999999999999999 889999999999998888888
Q ss_pred EEC
Q psy12296 188 HRG 190 (433)
Q Consensus 188 ~R~ 190 (433)
.-+
T Consensus 617 KtN 619 (1283)
T KOG3542|consen 617 KTN 619 (1283)
T ss_pred ecc
Confidence 654
No 67
>KOG3552|consensus
Probab=97.93 E-value=1.1e-05 Score=88.75 Aligned_cols=67 Identities=34% Similarity=0.545 Sum_probs=59.4
Q ss_pred CCeEeEEEEecCCCCCCeEEEEeCCCCHhHhCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCC-cEEEEEEEEc
Q psy12296 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIHSQ-NIISLKVRSV 75 (433)
Q Consensus 3 ~~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aG-L~~GD~ILaVNG~~V~~~s~~eav~lL~~g-~~V~L~V~R~ 75 (433)
+-.|||.++.| ..++|..|.+|||+. | |++||+||+|||.+|.++....++.+++.+ ..|.|+|.+.
T Consensus 64 ~~~lGFgfvag----rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qP 132 (1298)
T KOG3552|consen 64 NASLGFGFVAG----RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQP 132 (1298)
T ss_pred cccccceeecC----CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence 45789988876 569999999999999 6 999999999999999999999999999974 6788999874
No 68
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.88 E-value=0.00013 Score=65.13 Aligned_cols=70 Identities=31% Similarity=0.432 Sum_probs=48.3
Q ss_pred CCeEeEEEEecCCC---CCCeEEEEeCCCCHhHhCCCCC-CCEEEEECCEecCCCCHHHHHHHhc--CCcEEEEEEEE
Q psy12296 3 NGTLGFSIRGGREH---TTGVFVSNVEPKSEAERSGLLI-GDQIIRINGFPIEDATHSEVLQLIH--SQNIISLKVRS 74 (433)
Q Consensus 3 ~~gLGfsI~gG~~~---~~Gv~Vs~V~pgSpA~~aGL~~-GD~ILaVNG~~V~~~s~~eav~lL~--~g~~V~L~V~R 74 (433)
++.||++|.-..-. ..+.-|.+|.|+|||++|||++ .|-|+.+++..+.+.. ++...+. .+..+.|.|..
T Consensus 25 ~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~--~l~~~v~~~~~~~l~L~Vyn 100 (138)
T PF04495_consen 25 QGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDED--DLFELVEANENKPLQLYVYN 100 (138)
T ss_dssp SSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STC--HHHHHHHHTTTS-EEEEEEE
T ss_pred CCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCHH--HHHHHHHHcCCCcEEEEEEE
Confidence 46789988864332 4579999999999999999998 6999999998888653 4555554 36889998864
No 69
>KOG3606|consensus
Probab=97.84 E-value=3.8e-05 Score=74.52 Aligned_cols=71 Identities=30% Similarity=0.600 Sum_probs=60.0
Q ss_pred CCeEeEEEEec---------CCCCCCeEEEEeCCCCHhHhCC-CCCCCEEEEECCEecCCCCHHHHHHHhc-CCcEEEEE
Q psy12296 3 NGTLGFSIRGG---------REHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIH-SQNIISLK 71 (433)
Q Consensus 3 ~~gLGfsI~gG---------~~~~~Gv~Vs~V~pgSpA~~aG-L~~GD~ILaVNG~~V~~~s~~eav~lL~-~g~~V~L~ 71 (433)
..+|||-|+.| ++.-.||||+.+.|||.|+.-| |-+.|.||+|||+.|.+.+..++..++- +...+-++
T Consensus 170 ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshNLIiT 249 (358)
T KOG3606|consen 170 EKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNLIIT 249 (358)
T ss_pred CCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccceEEE
Confidence 45899999875 3455899999999999999999 9999999999999999999888887764 45666677
Q ss_pred EE
Q psy12296 72 VR 73 (433)
Q Consensus 72 V~ 73 (433)
|.
T Consensus 250 Vk 251 (358)
T KOG3606|consen 250 VK 251 (358)
T ss_pred ec
Confidence 74
No 70
>KOG3571|consensus
Probab=97.84 E-value=2.4e-05 Score=81.47 Aligned_cols=83 Identities=25% Similarity=0.366 Sum_probs=68.8
Q ss_pred cceEEeeCCCCCCCceeecCC--CCCCceEEEEECCCChhhhcC-CCCCCEEEEEccEecCChhhHHHHHHHhcCC----
Q psy12296 108 VPITLEVPPHGKLGCGICKGP--QWKPGIFVQFTKDACVAKDAG-LKCGDQILACNGVKFSPDVTFEHAVSVMKSS---- 180 (433)
Q Consensus 108 ~~v~L~~~~~~~LG~~l~gg~--~~~~GV~V~~V~~gspA~~aG-L~~GD~Il~ING~~v~s~~s~~eav~~Lr~~---- 180 (433)
.+|.|......-|||+|+|.. ..+.||||..|.+|++.+..| +.+||.||.||.+++. .++-.+||+.||..
T Consensus 251 ITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFE-NmSNd~AVrvLREaV~~~ 329 (626)
T KOG3571|consen 251 ITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFE-NMSNDQAVRVLREAVSRP 329 (626)
T ss_pred EEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchh-hcCchHHHHHHHHHhccC
Confidence 345566666667999999843 346799999999999877666 9999999999999999 99999999999874
Q ss_pred CeEEEEEEECC
Q psy12296 181 CLLELLVHRGV 191 (433)
Q Consensus 181 ~~v~L~V~R~~ 191 (433)
.+++|+|....
T Consensus 330 gPi~ltvAk~~ 340 (626)
T KOG3571|consen 330 GPIKLTVAKCW 340 (626)
T ss_pred CCeEEEEeecc
Confidence 67999987663
No 71
>KOG3651|consensus
Probab=97.78 E-value=6e-05 Score=74.20 Aligned_cols=80 Identities=21% Similarity=0.390 Sum_probs=70.6
Q ss_pred cceEEeeCCCCCCCceeecCCCCCCceEEEEECCCChhhhcC-CCCCCEEEEEccEecCChhhHHHHHHHhcCC-CeEEE
Q psy12296 108 VPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAG-LKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLEL 185 (433)
Q Consensus 108 ~~v~L~~~~~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aG-L~~GD~Il~ING~~v~s~~s~~eav~~Lr~~-~~v~L 185 (433)
..+.|+++...-+|++|-||...-.-+||..|..++||++.| ++.||.|++|||+.+. +.+-.++.++++.. ..|++
T Consensus 6 ~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svK-GktKveVAkmIQ~~~~eV~I 84 (429)
T KOG3651|consen 6 ETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVK-GKTKVEVAKMIQVSLNEVKI 84 (429)
T ss_pred CcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeec-CccHHHHHHHHHHhccceEE
Confidence 357788888888999999888777889999999999999988 9999999999999999 99999999998876 67777
Q ss_pred EEE
Q psy12296 186 LVH 188 (433)
Q Consensus 186 ~V~ 188 (433)
.+.
T Consensus 85 hyN 87 (429)
T KOG3651|consen 85 HYN 87 (429)
T ss_pred Eeh
Confidence 654
No 72
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.77 E-value=0.00015 Score=75.07 Aligned_cols=67 Identities=30% Similarity=0.565 Sum_probs=51.7
Q ss_pred CCeEeEEEEecCCCCCCeEEEEeC--------CCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcC--CcEEEEEE
Q psy12296 3 NGTLGFSIRGGREHTTGVFVSNVE--------PKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS--QNIISLKV 72 (433)
Q Consensus 3 ~~gLGfsI~gG~~~~~Gv~Vs~V~--------pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~--g~~V~L~V 72 (433)
+.++|+.+. ..||+|.... .+|||+++||++||+|++|||+++.++. ++..++.. +..+.|+|
T Consensus 95 G~~iGI~l~-----t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~~--DL~~iL~~~~g~~V~LtV 167 (402)
T TIGR02860 95 GQSIGVKLN-----TKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNMD--DLANLINKAGGEKLTLTI 167 (402)
T ss_pred CEEEEEEEe-----cCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCHH--HHHHHHHhCCCCeEEEEE
Confidence 345666665 3688886542 2689999999999999999999999884 45555543 67899999
Q ss_pred EEcC
Q psy12296 73 RSVG 76 (433)
Q Consensus 73 ~R~g 76 (433)
.|++
T Consensus 168 ~R~G 171 (402)
T TIGR02860 168 ERGG 171 (402)
T ss_pred EECC
Confidence 9987
No 73
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.76 E-value=6.4e-05 Score=78.38 Aligned_cols=52 Identities=33% Similarity=0.417 Sum_probs=42.5
Q ss_pred EEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCcEEEEEEE-EcC
Q psy12296 22 VSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNIISLKVR-SVG 76 (433)
Q Consensus 22 Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~g~~V~L~V~-R~g 76 (433)
|..|.|+|+|+++||++||+|++|||+.+.++. ++...+. +..+.++|. |++
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw~--D~~~~l~-~e~l~L~V~~rdG 54 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDLI--DYQFLCA-DEELELEVLDANG 54 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECCCHH--HHHHHhc-CCcEEEEEEcCCC
Confidence 678999999999999999999999999999884 4444444 456888886 554
No 74
>KOG1320|consensus
Probab=97.70 E-value=0.00018 Score=75.75 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=92.6
Q ss_pred CCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCH--H-----HHHHHhcCCcEEEEEEEEcCcccCccccceeeeE
Q psy12296 18 TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATH--S-----EVLQLIHSQNIISLKVRSVGMIPTKERDKSVTWK 90 (433)
Q Consensus 18 ~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~--~-----eav~lL~~g~~V~L~V~R~g~~~~~~~~~~~sv~ 90 (433)
.|+.|.++.+-+.|.+. ++.||.||.++|..+.-... . ..+..-..++.|.+.|.|.+. ....
T Consensus 287 ~g~~i~~~~qtd~ai~~-~nsg~~ll~~DG~~IgVn~~~~~ri~~~~~iSf~~p~d~vl~~v~r~~e---------~~~~ 356 (473)
T KOG1320|consen 287 TGVLISKINQTDAAINP-GNSGGPLLNLDGEVIGVNTRKVTRIGFSHGISFKIPIDTVLVIVLRLGE---------FQIS 356 (473)
T ss_pred cceeeeeecccchhhhc-ccCCCcEEEecCcEeeeeeeeeEEeeccccceeccCchHhhhhhhhhhh---------hcee
Confidence 56999999999999987 99999999999999852110 0 011111123444444444431 1111
Q ss_pred eecCCCccCCCCCCCCccceEEeeCCCCCCCceeecC-----CCCCCceEEEEECCCChhhhcCCCCCCEEEEEccEecC
Q psy12296 91 FVDTNKSNLNQNERFPVVPITLEVPPHGKLGCGICKG-----PQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFS 165 (433)
Q Consensus 91 l~~~p~s~~~~~~~~~~~~v~L~~~~~~~LG~~l~gg-----~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~ 165 (433)
+.+.....+.. .........+.. .|=+.+... ....++++|..|.+++++..+++.+||+|+.|||+++.
T Consensus 357 lr~~~~~~p~~-~~~g~~s~~i~~----g~vf~~~~~~~~~~~~~~q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~ 431 (473)
T KOG1320|consen 357 LRPVKPLVPVH-QYIGLPSYYIFA----GLVFVPLTKSYIFPSGVVQLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVK 431 (473)
T ss_pred eccccCccccc-ccCCceeEEEec----ceEEeecCCCccccccceeEEEEEEeccCCCcccccccCCCEEEEECCEEee
Confidence 11100000000 000000000000 000111000 01135799999999999999999999999999999999
Q ss_pred ChhhHHHHHHHhcCCCeEEEEEEECCee
Q psy12296 166 PDVTFEHAVSVMKSSCLLELLVHRGVGL 193 (433)
Q Consensus 166 s~~s~~eav~~Lr~~~~v~L~V~R~~~~ 193 (433)
+..++.++++.-..+..+.++.+|..+.
T Consensus 432 n~~~l~~~i~~~~~~~~v~vl~~~~~e~ 459 (473)
T KOG1320|consen 432 NLKHLYELIEECSTEDKVAVLDRRSAED 459 (473)
T ss_pred chHHHHHHHHhcCcCceEEEEEecCccc
Confidence 7777777776544345777777777654
No 75
>KOG4371|consensus
Probab=97.63 E-value=0.00011 Score=81.87 Aligned_cols=169 Identities=20% Similarity=0.376 Sum_probs=113.9
Q ss_pred CeEeEEEEecCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CcEEEEEEEEcCcccCcc
Q psy12296 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS-QNIISLKVRSVGMIPTKE 82 (433)
Q Consensus 4 ~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~-g~~V~L~V~R~g~~~~~~ 82 (433)
+.||..++. ...-+.|+...-.+.-.+-.|++||.++.+||+.+....+++++..++. |+.|.|-|+|..... .
T Consensus 1158 ~~l~~~~a~---~~~~~~~~~~~~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~ 1232 (1332)
T KOG4371|consen 1158 GSLGVQIAS---LSGRVCIKQLTSEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPPAY--S 1232 (1332)
T ss_pred CCCCceecc---CccceehhhcccCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCccc--c
Confidence 567776664 1223566655544444444599999999999999999999999999986 688999999865211 1
Q ss_pred ccceeeeEeecCCCccCCCCCCCCccceEEeeCCCCCCCceeecCCCCCCceEEEEECCCChhhhcC-CCCCCEEEEEcc
Q psy12296 83 RDKSVTWKFVDTNKSNLNQNERFPVVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAG-LKCGDQILACNG 161 (433)
Q Consensus 83 ~~~~~sv~l~~~p~s~~~~~~~~~~~~v~L~~~~~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aG-L~~GD~Il~ING 161 (433)
....++. +........+.+.+.+...+|+.+.... ...|++|..+..++.|.-.| +++||++...+|
T Consensus 1233 d~~~~s~-----------~~~~~~l~~~~~~~~p~~~~~~~~~~~~-~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~ 1300 (1332)
T KOG4371|consen 1233 DQHHASS-----------TSASAPLISVMLLKKPMATLGLSLAKRT-MSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDG 1300 (1332)
T ss_pred cchhhhh-----------hcccchhhhheeeecccccccccccccC-cCCceeeecccccccccccccccccceeeccCC
Confidence 0000000 0111222345566778888998886533 35689998888777776656 999999999999
Q ss_pred EecCChhhHHHHHHHhcCC-CeEEEEEEEC
Q psy12296 162 VKFSPDVTFEHAVSVMKSS-CLLELLVHRG 190 (433)
Q Consensus 162 ~~v~s~~s~~eav~~Lr~~-~~v~L~V~R~ 190 (433)
+++. +.+-...++.++-- +++.+++.|.
T Consensus 1301 ~~~~-~~~p~~~l~~~~~v~~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1301 EPVD-GFTPATILEKLKLVQGPVQITVTRE 1329 (1332)
T ss_pred ccCC-CCChHHHHHHhhhccCchhheehhh
Confidence 9998 66666666655422 5667776664
No 76
>KOG3606|consensus
Probab=97.61 E-value=0.00017 Score=70.03 Aligned_cols=76 Identities=25% Similarity=0.382 Sum_probs=64.4
Q ss_pred CCCCCceeecCC---------CCCCceEEEEECCCChhhhcC-CCCCCEEEEEccEecCChhhHHHHHHHhcCC-CeEEE
Q psy12296 117 HGKLGCGICKGP---------QWKPGIFVQFTKDACVAKDAG-LKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLEL 185 (433)
Q Consensus 117 ~~~LG~~l~gg~---------~~~~GV~V~~V~~gspA~~aG-L~~GD~Il~ING~~v~s~~s~~eav~~Lr~~-~~v~L 185 (433)
..+|||.|+.|. ....||||+.+.+|+.|+.-| |.++|.+++|||+.|. +.+++++..++-.+ ..+.+
T Consensus 170 ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVa-GKTLDQVTDMMvANshNLIi 248 (358)
T KOG3606|consen 170 EKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVA-GKTLDQVTDMMVANSHNLII 248 (358)
T ss_pred CCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEec-cccHHHHHHHHhhcccceEE
Confidence 467999998764 345799999999999999999 8999999999999999 99999999987665 77888
Q ss_pred EEEECCee
Q psy12296 186 LVHRGVGL 193 (433)
Q Consensus 186 ~V~R~~~~ 193 (433)
+|.-.++.
T Consensus 249 TVkPANQR 256 (358)
T KOG3606|consen 249 TVKPANQR 256 (358)
T ss_pred Eecccccc
Confidence 88655544
No 77
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.50 E-value=0.00041 Score=71.99 Aligned_cols=74 Identities=22% Similarity=0.258 Sum_probs=55.3
Q ss_pred CCCCceeecCCCCCCceEEEEEC--------CCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEE
Q psy12296 118 GKLGCGICKGPQWKPGIFVQFTK--------DACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHR 189 (433)
Q Consensus 118 ~~LG~~l~gg~~~~~GV~V~~V~--------~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R 189 (433)
..+|+.+. ..||+|.... .++||+++||++||+|++|||+++.+..++.++++... ++.+.|+|.|
T Consensus 96 ~~iGI~l~-----t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~~DL~~iL~~~~-g~~V~LtV~R 169 (402)
T TIGR02860 96 QSIGVKLN-----TKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNMDDLANLINKAG-GEKLTLTIER 169 (402)
T ss_pred EEEEEEEe-----cCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhCC-CCeEEEEEEE
Confidence 34555542 4577776442 25899999999999999999999996766666666553 4789999999
Q ss_pred CCeeeeec
Q psy12296 190 GVGLDLFP 197 (433)
Q Consensus 190 ~~~~~~~~ 197 (433)
+++...+.
T Consensus 170 ~Ge~~tv~ 177 (402)
T TIGR02860 170 GGKIIETV 177 (402)
T ss_pred CCEEEEEE
Confidence 98765443
No 78
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00056 Score=69.69 Aligned_cols=61 Identities=26% Similarity=0.394 Sum_probs=50.2
Q ss_pred CCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHH-HHHHHhcCCcEEEEEEEEcC
Q psy12296 16 HTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHS-EVLQLIHSQNIISLKVRSVG 76 (433)
Q Consensus 16 ~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~-eav~lL~~g~~V~L~V~R~g 76 (433)
...|++|..|.++|||+++|++.||+|+++||+++.+.... +.+.....|..+.+.+.|++
T Consensus 268 ~~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g 329 (347)
T COG0265 268 VAAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGG 329 (347)
T ss_pred CCCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECC
Confidence 45689999999999999999999999999999999997432 22222234789999999986
No 79
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=97.38 E-value=0.001 Score=54.96 Aligned_cols=68 Identities=25% Similarity=0.409 Sum_probs=44.4
Q ss_pred CeEeEEEEecCCCCCCeEEEEeCCC--------CHhHhCC--CCCCCEEEEECCEecCCCCHHHHHHHhc--CCcEEEEE
Q psy12296 4 GTLGFSIRGGREHTTGVFVSNVEPK--------SEAERSG--LLIGDQIIRINGFPIEDATHSEVLQLIH--SQNIISLK 71 (433)
Q Consensus 4 ~gLGfsI~gG~~~~~Gv~Vs~V~pg--------SpA~~aG--L~~GD~ILaVNG~~V~~~s~~eav~lL~--~g~~V~L~ 71 (433)
|-||..+.- + ..+..|.+|.++ ||..+.| +++||.|++|||+++..... ...+|. .|+.|.|+
T Consensus 1 G~LGAd~~~--~-~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~--~~~lL~~~agk~V~Lt 75 (88)
T PF14685_consen 1 GLLGADFSY--D-NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADAN--PYRLLEGKAGKQVLLT 75 (88)
T ss_dssp -B-SEEEEE--E-TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB---HHHHHHTTTTSEEEEE
T ss_pred CccceEEEE--c-CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCC--HHHHhcccCCCEEEEE
Confidence 356766664 2 367889999875 8888888 77999999999999998643 444443 47899999
Q ss_pred EEEcC
Q psy12296 72 VRSVG 76 (433)
Q Consensus 72 V~R~g 76 (433)
|.+.+
T Consensus 76 v~~~~ 80 (88)
T PF14685_consen 76 VNRKP 80 (88)
T ss_dssp EE-ST
T ss_pred EecCC
Confidence 98755
No 80
>KOG1892|consensus
Probab=97.35 E-value=0.00032 Score=77.72 Aligned_cols=82 Identities=28% Similarity=0.465 Sum_probs=65.2
Q ss_pred cceEEeeCCCCCCCceeec--CC-CCCCceEEEEECCCChhhhcC-CCCCCEEEEEccEecCChhhHHHHHHHhcCC-Ce
Q psy12296 108 VPITLEVPPHGKLGCGICK--GP-QWKPGIFVQFTKDACVAKDAG-LKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CL 182 (433)
Q Consensus 108 ~~v~L~~~~~~~LG~~l~g--g~-~~~~GV~V~~V~~gspA~~aG-L~~GD~Il~ING~~v~s~~s~~eav~~Lr~~-~~ 182 (433)
..|+|.+. .++|++|.. |. ...-||||.+|.+|++|+..| |..||++|.|||+.+- +.+-+.|.+++-.. ..
T Consensus 935 ~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLi-GisQErAA~lmtrtg~v 1011 (1629)
T KOG1892|consen 935 ITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLI-GISQERAARLMTRTGNV 1011 (1629)
T ss_pred EEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccc-cccHHHHHHHHhccCCe
Confidence 34455554 778888764 22 235699999999999998877 9999999999999999 88999998886554 78
Q ss_pred EEEEEEECCe
Q psy12296 183 LELLVHRGVG 192 (433)
Q Consensus 183 v~L~V~R~~~ 192 (433)
|.|.|.+.+.
T Consensus 1012 V~leVaKqgA 1021 (1629)
T KOG1892|consen 1012 VHLEVAKQGA 1021 (1629)
T ss_pred EEEehhhhhh
Confidence 8999877654
No 81
>KOG3552|consensus
Probab=97.33 E-value=0.00023 Score=78.65 Aligned_cols=68 Identities=28% Similarity=0.462 Sum_probs=58.2
Q ss_pred CCCCCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCC-CeEEEEEEEC
Q psy12296 117 HGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLELLVHRG 190 (433)
Q Consensus 117 ~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~-~~v~L~V~R~ 190 (433)
...|||.+..| .+|+|..|.+|||+. ..|.+||+|+.|||.++. ...++.+++++|.+ ..|.|+|.+.
T Consensus 64 ~~~lGFgfvag----rPviVr~VT~GGps~-GKL~PGDQIl~vN~Epv~-daprervIdlvRace~sv~ltV~qP 132 (1298)
T KOG3552|consen 64 NASLGFGFVAG----RPVIVRFVTEGGPSI-GKLQPGDQILAVNGEPVK-DAPRERVIDLVRACESSVNLTVCQP 132 (1298)
T ss_pred cccccceeecC----CceEEEEecCCCCcc-ccccCCCeEEEecCcccc-cccHHHHHHHHHHHhhhcceEEecc
Confidence 34566666543 579999999999985 449999999999999999 99999999999998 7899999885
No 82
>KOG0609|consensus
Probab=97.30 E-value=0.00041 Score=73.25 Aligned_cols=69 Identities=30% Similarity=0.550 Sum_probs=60.0
Q ss_pred CCeEeEEEEecCCCCCCeEEEEeCCCCHhHhCC-CCCCCEEEEECCEecCCCCHHHHHHHhcC-CcEEEEEEE
Q psy12296 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIHS-QNIISLKVR 73 (433)
Q Consensus 3 ~~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aG-L~~GD~ILaVNG~~V~~~s~~eav~lL~~-g~~V~L~V~ 73 (433)
+..||.+|.- +...-++|..|..||.|++.| |.+||.|++|||+.+.+....++..+++. ...|+++|.
T Consensus 133 ~eplG~Tik~--~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkii 203 (542)
T KOG0609|consen 133 GEPLGATIRV--EEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKII 203 (542)
T ss_pred CCccceEEEe--ccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEc
Confidence 5689999995 322379999999999999999 99999999999999999988899999986 467888885
No 83
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=97.26 E-value=0.00092 Score=66.14 Aligned_cols=54 Identities=26% Similarity=0.332 Sum_probs=44.8
Q ss_pred EeCCCC---HhHhCCCCCCCEEEEECCEecCCCCH-HHHHHHhcCCcEEEEEEEEcCc
Q psy12296 24 NVEPKS---EAERSGLLIGDQIIRINGFPIEDATH-SEVLQLIHSQNIISLKVRSVGM 77 (433)
Q Consensus 24 ~V~pgS---pA~~aGL~~GD~ILaVNG~~V~~~s~-~eav~lL~~g~~V~L~V~R~g~ 77 (433)
.|.||. ...++||++||++++|||.++.+..+ .++.+.+++...++|+|.|+|.
T Consensus 210 rl~Pgkd~~lF~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeRdGq 267 (276)
T PRK09681 210 AVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGA 267 (276)
T ss_pred EECCCCcHHHHHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEECCE
Confidence 456763 46889999999999999999998754 3567778888999999999993
No 84
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=97.26 E-value=0.00075 Score=66.74 Aligned_cols=59 Identities=20% Similarity=0.144 Sum_probs=50.0
Q ss_pred EECCCCh---hhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeeee
Q psy12296 138 FTKDACV---AKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLF 196 (433)
Q Consensus 138 ~V~~gsp---A~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~~ 196 (433)
.|.||.. -.++||++||++++|||.++.+.....++++.|+....+.|+|.|+|+...+
T Consensus 210 rl~Pgkd~~lF~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeRdGq~~~i 271 (276)
T PRK09681 210 AVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDI 271 (276)
T ss_pred EECCCCcHHHHHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEECCEEEEE
Confidence 5566643 4578999999999999999997788888999999899999999999987543
No 85
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.26 E-value=0.00052 Score=71.71 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=43.6
Q ss_pred EEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEE-ECCeeeee
Q psy12296 136 VQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVH-RGVGLDLF 196 (433)
Q Consensus 136 V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~-R~~~~~~~ 196 (433)
|..|.++|+|+++||++||+|++|||+++.++.++..++ . ...+.|+|. |+++...+
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw~D~~~~l---~-~e~l~L~V~~rdGe~~~l 59 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDLIDYQFLC---A-DEELELEVLDANGESHQI 59 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHh---c-CCcEEEEEEcCCCeEEEE
Confidence 567899999999999999999999999999554444333 2 356888886 66655333
No 86
>KOG3834|consensus
Probab=97.22 E-value=0.0028 Score=65.42 Aligned_cols=146 Identities=22% Similarity=0.190 Sum_probs=88.5
Q ss_pred CCCeEEEEeCCCCHhHhCCCC-CCCEEEEECCEecCCCCHHHHHHHhcC-CcEEEEEEEEcCcccCccccceeeeEeecC
Q psy12296 17 TTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQLIHS-QNIISLKVRSVGMIPTKERDKSVTWKFVDT 94 (433)
Q Consensus 17 ~~Gv~Vs~V~pgSpA~~aGL~-~GD~ILaVNG~~V~~~s~~eav~lL~~-g~~V~L~V~R~g~~~~~~~~~~~sv~l~~~ 94 (433)
..|..|.+|..+|+|+++||. --|-|++|||.-+..... .+..+++. ...|+|+|.-.... ..+.+.+....
T Consensus 14 teg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~dnd-~Lk~llk~~sekVkltv~n~kt~----~~R~v~I~ps~- 87 (462)
T KOG3834|consen 14 TEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKDND-TLKALLKANSEKVKLTVYNSKTQ----EVRIVEIVPSN- 87 (462)
T ss_pred ceeEEEEEeecCChHHhcCcchhhhhhheeCcccccCchH-HHHHHHHhcccceEEEEEecccc----eeEEEEecccc-
Confidence 468999999999999999954 568899999999987543 45555654 34588888632100 00122211100
Q ss_pred CCccCCCCCCCCccceEEeeCCCCCCCceeecCCC---CCCceEEEEECCCChhhhcCCC-CCCEEEEE-ccEecCChhh
Q psy12296 95 NKSNLNQNERFPVVPITLEVPPHGKLGCGICKGPQ---WKPGIFVQFTKDACVAKDAGLK-CGDQILAC-NGVKFSPDVT 169 (433)
Q Consensus 95 p~s~~~~~~~~~~~~v~L~~~~~~~LG~~l~gg~~---~~~GV~V~~V~~gspA~~aGL~-~GD~Il~I-NG~~v~s~~s 169 (433)
. ....-||++|+--.. ...---|-+|.+++||+.+||+ -+|-|+.+ |.+- . +
T Consensus 88 ---------~----------wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~-~---~ 144 (462)
T KOG3834|consen 88 ---------N----------WGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVM-H---E 144 (462)
T ss_pred ---------c----------ccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhc-c---c
Confidence 0 001125555532111 0112237799999999999988 89999999 5443 3 3
Q ss_pred HHHHHHHhcC--CCeEEEEEEECC
Q psy12296 170 FEHAVSVMKS--SCLLELLVHRGV 191 (433)
Q Consensus 170 ~~eav~~Lr~--~~~v~L~V~R~~ 191 (433)
.++....|.. ++.+.|.|..-+
T Consensus 145 ~eDl~~lIeshe~kpLklyVYN~D 168 (462)
T KOG3834|consen 145 EEDLFTLIESHEGKPLKLYVYNHD 168 (462)
T ss_pred hHHHHHHHHhccCCCcceeEeecC
Confidence 3444444433 367777775443
No 87
>KOG3129|consensus
Probab=97.19 E-value=0.0011 Score=62.38 Aligned_cols=57 Identities=25% Similarity=0.455 Sum_probs=44.8
Q ss_pred eEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHH-HHHHhc--CCcEEEEEEEEcC
Q psy12296 20 VFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSE-VLQLIH--SQNIISLKVRSVG 76 (433)
Q Consensus 20 v~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~e-av~lL~--~g~~V~L~V~R~g 76 (433)
++|..|.|+|||+.+||+.||.|+.+....-.++...+ +....+ ++..+.++|.|.+
T Consensus 141 a~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g 200 (231)
T KOG3129|consen 141 AVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREG 200 (231)
T ss_pred EEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCC
Confidence 78999999999999999999999999987776655322 222222 3778999999877
No 88
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=97.19 E-value=0.00054 Score=72.32 Aligned_cols=62 Identities=27% Similarity=0.389 Sum_probs=46.1
Q ss_pred eEeEEEEecCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCcEEEEEEEEcC
Q psy12296 5 TLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNIISLKVRSVG 76 (433)
Q Consensus 5 gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~g~~V~L~V~R~g 76 (433)
.||+.+.. ...+..|+.|.++|||++|||.+||.|++|||..-. ....+.++.|.+.+.|.+
T Consensus 452 ~LGl~v~~---~~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s~~-------l~~~~~~d~i~v~~~~~~ 513 (558)
T COG3975 452 YLGLKVKS---EGGHEKITFVFPGGPAYKAGLSPGDKIVAINGISDQ-------LDRYKVNDKIQVHVFREG 513 (558)
T ss_pred ccceEecc---cCCeeEEEecCCCChhHhccCCCccEEEEEcCcccc-------ccccccccceEEEEccCC
Confidence 45666553 234689999999999999999999999999999111 111234677888887766
No 89
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0017 Score=66.11 Aligned_cols=68 Identities=25% Similarity=0.197 Sum_probs=59.7
Q ss_pred CCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeeeecC
Q psy12296 131 KPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLFPG 198 (433)
Q Consensus 131 ~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~~~~ 198 (433)
..|++|..|.+++||.++|++.||+|+++||..+.+...+.+.+...+.+..+.+.+.|+++...+..
T Consensus 269 ~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g~~~~~~v 336 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGGKERELAV 336 (347)
T ss_pred CCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECCEEEEEEE
Confidence 56899999999999999999999999999999999888888888777766899999999987655543
No 90
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=96.97 E-value=0.0028 Score=56.67 Aligned_cols=74 Identities=22% Similarity=0.180 Sum_probs=51.3
Q ss_pred CCCCCceeecCC---CCCCceEEEEECCCChhhhcCCCC-CCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECC
Q psy12296 117 HGKLGCGICKGP---QWKPGIFVQFTKDACVAKDAGLKC-GDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGV 191 (433)
Q Consensus 117 ~~~LG~~l~gg~---~~~~GV~V~~V~~gspA~~aGL~~-GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~ 191 (433)
.+.||++++... ....+.-|..|.++|||+++||++ .|.|+.+++..+.+..++.+.++. ..++.+.|.|....
T Consensus 25 ~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~~l~~~v~~-~~~~~l~L~Vyns~ 102 (138)
T PF04495_consen 25 QGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDEDDLFELVEA-NENKPLQLYVYNSK 102 (138)
T ss_dssp SSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STCHHHHHHHH-TTTS-EEEEEEETT
T ss_pred CCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCHHHHHHHHHH-cCCCcEEEEEEECC
Confidence 466788776432 224578899999999999999998 699999999988877778777765 33478999887643
No 91
>KOG3129|consensus
Probab=96.82 E-value=0.0034 Score=59.21 Aligned_cols=65 Identities=22% Similarity=0.229 Sum_probs=51.6
Q ss_pred ceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCC--CeEEEEEEECCeeeeec
Q psy12296 133 GIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS--CLLELLVHRGVGLDLFP 197 (433)
Q Consensus 133 GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~--~~v~L~V~R~~~~~~~~ 197 (433)
=++|..|.++|||+++||+.||.|+.+..+.-.+...+...-...+.. +.+.++|.|.+....+.
T Consensus 140 Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ 206 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLS 206 (231)
T ss_pred eEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEE
Confidence 467999999999999999999999999888766555566555444443 78999999998776553
No 92
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=96.73 E-value=0.014 Score=58.38 Aligned_cols=56 Identities=23% Similarity=0.432 Sum_probs=47.6
Q ss_pred CCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhc---CCcEEEEEEEEcC
Q psy12296 18 TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH---SQNIISLKVRSVG 76 (433)
Q Consensus 18 ~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~---~g~~V~L~V~R~g 76 (433)
.|+||..|..+++|..- |+.||.|++|||+++.+. .++...++ .|+.|++.+.|..
T Consensus 130 ~gvyv~~v~~~~~~~gk-l~~gD~i~avdg~~f~s~--~e~i~~v~~~k~Gd~VtI~~~r~~ 188 (342)
T COG3480 130 AGVYVLSVIDNSPFKGK-LEAGDTIIAVDGEPFTSS--DELIDYVSSKKPGDEVTIDYERHN 188 (342)
T ss_pred eeEEEEEccCCcchhce-eccCCeEEeeCCeecCCH--HHHHHHHhccCCCCeEEEEEEecc
Confidence 48999999999999832 999999999999999987 45666665 3899999999754
No 93
>KOG3938|consensus
Probab=96.67 E-value=0.0015 Score=63.44 Aligned_cols=68 Identities=25% Similarity=0.428 Sum_probs=56.4
Q ss_pred CeEeEEEEecCCCCCCeEEEEeCCCCHhHhCC-CCCCCEEEEECCEecCCCCHHHHHHHhcC---CcEEEEEEE
Q psy12296 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIHS---QNIISLKVR 73 (433)
Q Consensus 4 ~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aG-L~~GD~ILaVNG~~V~~~s~~eav~lL~~---g~~V~L~V~ 73 (433)
..||++|.. +.-.-.||+.|.+||...+.- +++||.|-+|||+++-++.|.++..+|++ |...+|.+.
T Consensus 137 dalGlTITD--NG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLi 208 (334)
T KOG3938|consen 137 DALGLTITD--NGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLI 208 (334)
T ss_pred cccceEEee--CCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEee
Confidence 468999984 222349999999999998887 99999999999999999999999999986 565555543
No 94
>KOG0609|consensus
Probab=96.66 E-value=0.0036 Score=66.33 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=66.8
Q ss_pred ccceEEeeCCCCCCCceeecCCCCCCceEEEEECCCChhhhcC-CCCCCEEEEEccEecCChhhHHHHHHHhcCC-CeEE
Q psy12296 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAG-LKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLE 184 (433)
Q Consensus 107 ~~~v~L~~~~~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aG-L~~GD~Il~ING~~v~s~~s~~eav~~Lr~~-~~v~ 184 (433)
...+.+.+.....+|..++... ...++|..+..|+.|++.| |..||.|++|||+.+. +.+..++..+++.. +.++
T Consensus 123 vriv~i~k~~~eplG~Tik~~e--~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~-~~~~~e~q~~l~~~~G~it 199 (542)
T KOG0609|consen 123 VRIVRIVKNTGEPLGATIRVEE--DTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVA-NKSPEELQELLRNSRGSIT 199 (542)
T ss_pred eEEEEEeecCCCccceEEEecc--CCccEEeeeccCCcchhccceeeccchheecCeecc-cCCHHHHHHHHHhCCCcEE
Confidence 3446667777788999986432 2258999999999999999 9999999999999999 88899999998876 7888
Q ss_pred EEEEEC
Q psy12296 185 LLVHRG 190 (433)
Q Consensus 185 L~V~R~ 190 (433)
+.|.-.
T Consensus 200 fkiiP~ 205 (542)
T KOG0609|consen 200 FKIIPS 205 (542)
T ss_pred EEEccc
Confidence 887544
No 95
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.44 E-value=0.013 Score=48.38 Aligned_cols=59 Identities=24% Similarity=0.218 Sum_probs=37.9
Q ss_pred CceEEEEECCC--------ChhhhcC--CCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECC
Q psy12296 132 PGIFVQFTKDA--------CVAKDAG--LKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGV 191 (433)
Q Consensus 132 ~GV~V~~V~~g--------spA~~aG--L~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~ 191 (433)
.+..|..|.+| ||..+.| +++||.|++|||+++....+..+++.- +.++.+.|+|.+.+
T Consensus 12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~~~~lL~~-~agk~V~Ltv~~~~ 80 (88)
T PF14685_consen 12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADANPYRLLEG-KAGKQVLLTVNRKP 80 (88)
T ss_dssp TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB-HHHHHHT-TTTSEEEEEEE-ST
T ss_pred CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCCHHHHhcc-cCCCEEEEEEecCC
Confidence 35567777665 7777777 779999999999999955666655542 23489999998875
No 96
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.44 E-value=0.007 Score=64.15 Aligned_cols=69 Identities=26% Similarity=0.206 Sum_probs=51.9
Q ss_pred CCCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeeeecC
Q psy12296 119 KLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLFPG 198 (433)
Q Consensus 119 ~LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~~~~ 198 (433)
.||+.+. ....+..|+.|.++|||..+||.+||.|++|||.+-. +...+.+..|.+.+.|.+....++.
T Consensus 452 ~LGl~v~---~~~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s~~--------l~~~~~~d~i~v~~~~~~~L~e~~v 520 (558)
T COG3975 452 YLGLKVK---SEGGHEKITFVFPGGPAYKAGLSPGDKIVAINGISDQ--------LDRYKVNDKIQVHVFREGRLREFLV 520 (558)
T ss_pred ccceEec---ccCCeeEEEecCCCChhHhccCCCccEEEEEcCcccc--------ccccccccceEEEEccCCceEEeec
Confidence 5777663 2234678999999999999999999999999999222 2233445778999988887766644
No 97
>KOG0606|consensus
Probab=96.33 E-value=0.0051 Score=69.96 Aligned_cols=70 Identities=34% Similarity=0.518 Sum_probs=55.0
Q ss_pred CCeEeEEEEec------CCC-CCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhc-CCcEEEEEE
Q psy12296 3 NGTLGFSIRGG------REH-TTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH-SQNIISLKV 72 (433)
Q Consensus 3 ~~gLGfsI~gG------~~~-~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~-~g~~V~L~V 72 (433)
..+|||++..= .+. ..--.|..|.++|||..+||+.||.|+.|||+.|.+..|.++++++- +|..|.+.+
T Consensus 636 ~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~~~t 713 (1205)
T KOG0606|consen 636 GKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVTLRT 713 (1205)
T ss_pred ccccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCCeeEEEe
Confidence 45788877651 110 11256788999999999999999999999999999999999998875 577776665
No 98
>KOG3605|consensus
Probab=96.27 E-value=0.0043 Score=66.84 Aligned_cols=81 Identities=23% Similarity=0.374 Sum_probs=62.1
Q ss_pred cceEEeeCCCCCCCceeecCCCC---CCceEEEEECCCChhhhcC-CCCCCEEEEEccEecCChhhHHHHHHHhcC---C
Q psy12296 108 VPITLEVPPHGKLGCGICKGPQW---KPGIFVQFTKDACVAKDAG-LKCGDQILACNGVKFSPDVTFEHAVSVMKS---S 180 (433)
Q Consensus 108 ~~v~L~~~~~~~LG~~l~gg~~~---~~GV~V~~V~~gspA~~aG-L~~GD~Il~ING~~v~s~~s~~eav~~Lr~---~ 180 (433)
+.|.+.+....-||+.|.. ..| ..-|+|.....++||++.| |..||+|++|||..+- +.-+......+|+ .
T Consensus 647 KEVvv~K~kGEiLGVViVE-SGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLV-GLPLstcQs~Ik~~KnQ 724 (829)
T KOG3605|consen 647 KEVVLEKHKGEILGVVIVE-SGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLV-GLPLSTCQSIIKGLKNQ 724 (829)
T ss_pred ceeeeecccCceeeEEEEe-cCccccchHHHHHhcccCChhhhcCCccccceeEeecCceec-cccHHHHHHHHhccccc
Confidence 4567777777788887753 111 2347788999999999999 9999999999999998 7777766666655 3
Q ss_pred CeEEEEEEEC
Q psy12296 181 CLLELLVHRG 190 (433)
Q Consensus 181 ~~v~L~V~R~ 190 (433)
..|+|+|.+-
T Consensus 725 T~VkltiV~c 734 (829)
T KOG3605|consen 725 TAVKLNIVSC 734 (829)
T ss_pred ceEEEEEecC
Confidence 6788888665
No 99
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=96.12 E-value=0.012 Score=56.66 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=50.7
Q ss_pred EEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECCeeee
Q psy12296 136 VQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDL 195 (433)
Q Consensus 136 V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~~~~~ 195 (433)
+.-..+++.-...||+.||+.++||+.++++......++++|+.-..+.|+|.|+|...-
T Consensus 211 ~~pgkd~slF~~sglq~GDIavaiNnldltdp~~m~~llq~l~~m~s~qlTv~R~G~rhd 270 (275)
T COG3031 211 FEPGKDGSLFYKSGLQRGDIAVAINNLDLTDPEDMFRLLQMLRNMPSLQLTVIRRGKRHD 270 (275)
T ss_pred ecCCCCcchhhhhcCCCcceEEEecCcccCCHHHHHHHHHhhhcCcceEEEEEecCccce
Confidence 444455677788999999999999999999888888889988888999999999987543
No 100
>KOG3532|consensus
Probab=96.00 E-value=0.018 Score=62.39 Aligned_cols=68 Identities=22% Similarity=0.394 Sum_probs=49.8
Q ss_pred CCeEeEEEEecCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CcEEEEEEEE
Q psy12296 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS-QNIISLKVRS 74 (433)
Q Consensus 3 ~~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~-g~~V~L~V~R 74 (433)
+..+|+.... ...+-|-|-.|+++++|.++.|++||++++|||.+|+.. .++...++. ...|...+.|
T Consensus 385 s~~ig~vf~~--~~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s~--~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 385 SSPIGLVFDK--NTNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRSE--RQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred cCceeEEEec--CCceEEEEEEecCCChhhHhcCCCcceEEEecCccchhH--HHHHHHHHhcccceEEEEee
Confidence 3456666553 334568899999999999999999999999999999976 566666664 2334444433
No 101
>PF12812 PDZ_1: PDZ-like domain
Probab=95.84 E-value=0.02 Score=46.15 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=39.5
Q ss_pred ceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcC
Q psy12296 133 GIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKS 179 (433)
Q Consensus 133 GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~ 179 (433)
|+++.....|+++...|+..|-+|.+|||+++.|.+++.++++.|..
T Consensus 31 ~gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~Ld~f~~vvk~ipd 77 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDLDDFIKVVKKIPD 77 (78)
T ss_pred CEEEEEecCCChhhhCCCCCCeEEEeECCcCCcCHHHHHHHHHhCCC
Confidence 34555667788888777999999999999999989999998887754
No 102
>KOG4407|consensus
Probab=95.80 E-value=0.0077 Score=69.06 Aligned_cols=100 Identities=20% Similarity=0.254 Sum_probs=75.7
Q ss_pred eEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCcEEEEEEEEcCcccCccccceeeeEeecCCCccC
Q psy12296 20 VFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNL 99 (433)
Q Consensus 20 v~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~g~~V~L~V~R~g~~~~~~~~~~~sv~l~~~p~s~~ 99 (433)
+++..+..++++..+|+..||.|..|||..+.+.+. ....+++.
T Consensus 98 ~~~~Q~~s~~~~~nsG~~s~~~v~~itG~e~~~~TS-~~~~~vk~----------------------------------- 141 (1973)
T KOG4407|consen 98 TNWPQEASSAAGSNSGSSSSVGVAGITGLEPTSPTS-LPPYQVKA----------------------------------- 141 (1973)
T ss_pred cccchhcccCcccccCcccccceeeecccccCCCcc-ccHHHHhh-----------------------------------
Confidence 666677788888888999999999999877765431 01000000
Q ss_pred CCCCCCCccceEEeeCCCCCCCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcC
Q psy12296 100 NQNERFPVVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKS 179 (433)
Q Consensus 100 ~~~~~~~~~~v~L~~~~~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~ 179 (433)
..-+||..|.++++|..+.|+.||+++.||.+++. +....++|.+++.
T Consensus 142 -------------------------------~eT~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A-~i~~s~~~S~~~q 189 (1973)
T KOG4407|consen 142 -------------------------------METIFIKEVQANGPAHYANLQTGDRVLMVNNQPIA-GIAYSTIVSMIKQ 189 (1973)
T ss_pred -------------------------------hhhhhhhhhccCChhHHHhhhccceeEEeecCccc-chhhhhhhhhhcc
Confidence 12357888899999999999999999999999999 9999999999987
Q ss_pred C-CeEEEEE
Q psy12296 180 S-CLLELLV 187 (433)
Q Consensus 180 ~-~~v~L~V 187 (433)
. ..+.|.|
T Consensus 190 t~~~~~~~~ 198 (1973)
T KOG4407|consen 190 TPAVLTLHV 198 (1973)
T ss_pred CCCCCCcee
Confidence 7 4445544
No 103
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=95.70 E-value=0.02 Score=55.18 Aligned_cols=59 Identities=25% Similarity=0.308 Sum_probs=46.8
Q ss_pred CeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHH-HHHHHhcCCcEEEEEEEEcCc
Q psy12296 19 GVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHS-EVLQLIHSQNIISLKVRSVGM 77 (433)
Q Consensus 19 Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~-eav~lL~~g~~V~L~V~R~g~ 77 (433)
|..+.-.-+++..+..||+.||+.++||+.++++-... .+.+++.+-..+.|+|.|+|.
T Consensus 208 Gyr~~pgkd~slF~~sglq~GDIavaiNnldltdp~~m~~llq~l~~m~s~qlTv~R~G~ 267 (275)
T COG3031 208 GYRFEPGKDGSLFYKSGLQRGDIAVAINNLDLTDPEDMFRLLQMLRNMPSLQLTVIRRGK 267 (275)
T ss_pred EEEecCCCCcchhhhhcCCCcceEEEecCcccCCHHHHHHHHHhhhcCcceEEEEEecCc
Confidence 45555556678899999999999999999999986432 355666667889999999984
No 104
>KOG1320|consensus
Probab=95.56 E-value=0.031 Score=59.17 Aligned_cols=57 Identities=32% Similarity=0.508 Sum_probs=46.9
Q ss_pred CCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcC---CcEEEEEEEEcC
Q psy12296 18 TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS---QNIISLKVRSVG 76 (433)
Q Consensus 18 ~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~---g~~V~L~V~R~g 76 (433)
++++|..|.+++++...++.+||+|++|||++|.+..| +..++.. ++.|.++.+|..
T Consensus 398 q~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~~--l~~~i~~~~~~~~v~vl~~~~~ 457 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLKH--LYELIEECSTEDKVAVLDRRSA 457 (473)
T ss_pred eEEEEEEeccCCCcccccccCCCEEEEECCEEeechHH--HHHHHHhcCcCceEEEEEecCc
Confidence 47999999999999999999999999999999999854 6666654 356766666543
No 105
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=94.63 E-value=0.085 Score=52.96 Aligned_cols=59 Identities=25% Similarity=0.301 Sum_probs=47.7
Q ss_pred CceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCCeEEEEEEECC
Q psy12296 132 PGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGV 191 (433)
Q Consensus 132 ~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~~v~L~V~R~~ 191 (433)
.|||+..|..++++.. -|..||.|++|||+++.+...+.+.+...+.++.|++.+.|.+
T Consensus 130 ~gvyv~~v~~~~~~~g-kl~~gD~i~avdg~~f~s~~e~i~~v~~~k~Gd~VtI~~~r~~ 188 (342)
T COG3480 130 AGVYVLSVIDNSPFKG-KLEAGDTIIAVDGEPFTSSDELIDYVSSKKPGDEVTIDYERHN 188 (342)
T ss_pred eeEEEEEccCCcchhc-eeccCCeEEeeCCeecCCHHHHHHHHhccCCCCeEEEEEEecc
Confidence 5899999999999853 3999999999999999966656555555555689999999743
No 106
>KOG3532|consensus
Probab=94.34 E-value=0.12 Score=56.25 Aligned_cols=68 Identities=26% Similarity=0.308 Sum_probs=49.2
Q ss_pred CCCCCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCC-CeEEEEEEE
Q psy12296 117 HGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLELLVHR 189 (433)
Q Consensus 117 ~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~-~~v~L~V~R 189 (433)
..++|+.... ....-|-|..|.++++|.++.|++||++++|||++++ +.+++.+.++.. ..+..++.|
T Consensus 385 s~~ig~vf~~--~~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~---s~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 385 SSPIGLVFDK--NTNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIR---SERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred cCceeEEEec--CCceEEEEEEecCCChhhHhcCCCcceEEEecCccch---hHHHHHHHHHhcccceEEEEee
Confidence 4455655432 2234577999999999999999999999999999999 556666655543 455555555
No 107
>KOG1738|consensus
Probab=93.69 E-value=0.089 Score=56.95 Aligned_cols=68 Identities=21% Similarity=0.255 Sum_probs=56.3
Q ss_pred CCeEeEEEEecCCCCCCeEEEEeCCCCHhHhCC-CCCCCEEEEECCEecCCCCHHHHHHHhcCC-cEEEEEE
Q psy12296 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIHSQ-NIISLKV 72 (433)
Q Consensus 3 ~~gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aG-L~~GD~ILaVNG~~V~~~s~~eav~lL~~g-~~V~L~V 72 (433)
+.|||+.|..-.+ .-.+|+.+.+++||...+ |..||.|+.||+..|-+|.+..++..++.. .-|.++|
T Consensus 212 ~eglg~~I~Ssyd--g~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~l 281 (638)
T KOG1738|consen 212 SEGLGLYIDSSYD--GPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTL 281 (638)
T ss_pred ccCCceEEeeecC--CceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeee
Confidence 4689999997555 468899999999999999 999999999999999999988888888762 2244444
No 108
>KOG0606|consensus
Probab=91.75 E-value=0.23 Score=57.12 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=43.6
Q ss_pred EEEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCC-CeEEE
Q psy12296 135 FVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLEL 185 (433)
Q Consensus 135 ~V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~-~~v~L 185 (433)
.|..|.+|+||..+||+.||.|+.|||..+. +..|.++++++-.. ..+.+
T Consensus 661 ~v~sv~egsPA~~agls~~DlIthvnge~v~-gl~H~ev~~Lll~~gn~v~~ 711 (1205)
T KOG0606|consen 661 SVGSVEEGSPAFEAGLSAGDLITHVNGEPVH-GLVHTEVMELLLKSGNKVTL 711 (1205)
T ss_pred eeeeecCCCCccccCCCccceeEeccCcccc-hhhHHHHHHHHHhcCCeeEE
Confidence 4779999999999999999999999999999 99999999997643 44444
No 109
>KOG3938|consensus
Probab=91.65 E-value=0.27 Score=48.27 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=60.1
Q ss_pred cceEEeeCCCCCCCceeecCCCCCCceEEEEECCCChhhhcC-CCCCCEEEEEccEecCChhhHHHHHHHhcC---CCeE
Q psy12296 108 VPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAG-LKCGDQILACNGVKFSPDVTFEHAVSVMKS---SCLL 183 (433)
Q Consensus 108 ~~v~L~~~~~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aG-L~~GD~Il~ING~~v~s~~s~~eav~~Lr~---~~~v 183 (433)
..+.+.+. ...||++|.. ++-.-.||..+.+||.-++.. +.+||.|-+|||+++- +..|-|+.++|+. ++..
T Consensus 128 kEv~v~Ks-edalGlTITD--NG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~iv-G~RHYeVArmLKel~rge~f 203 (334)
T KOG3938|consen 128 KEVEVVKS-EDALGLTITD--NGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIV-GKRHYEVARMLKELPRGETF 203 (334)
T ss_pred eeEEEEec-ccccceEEee--CCcceeeeEeecCCchhhhhhheeHHhHHHhhcCcccc-chhHHHHHHHHHhcccCCee
Confidence 44555553 4679999863 112236899999999988765 9999999999999999 9999999988876 3667
Q ss_pred EEEEEEC
Q psy12296 184 ELLVHRG 190 (433)
Q Consensus 184 ~L~V~R~ 190 (433)
+|.+...
T Consensus 204 tlrLieP 210 (334)
T KOG3938|consen 204 TLRLIEP 210 (334)
T ss_pred EEEeecc
Confidence 7765443
No 110
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=91.31 E-value=0.5 Score=48.31 Aligned_cols=54 Identities=26% Similarity=0.412 Sum_probs=41.8
Q ss_pred EEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcCCcE---EEEEEEE
Q psy12296 21 FVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNI---ISLKVRS 74 (433)
Q Consensus 21 ~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~g~~---V~L~V~R 74 (433)
++..+..+++|+.+||+.||+|+++|+.++..+...........+.. +.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAGLRPGDRIVAVDGEKVASWDDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcCCCCCCEEEeECCEEccCHHHHHHHHHhccCCcccceEEEEEe
Confidence 34478999999999999999999999999999865433333334444 6777777
No 111
>KOG1738|consensus
Probab=89.30 E-value=0.87 Score=49.55 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=56.9
Q ss_pred CCCCCCCceeecCCCCCCceEEEEECCCChhhhcC-CCCCCEEEEEccEecCChhhHHHHHHHhcCC-CeEEEEE-EEC
Q psy12296 115 PPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAG-LKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLELLV-HRG 190 (433)
Q Consensus 115 ~~~~~LG~~l~gg~~~~~GV~V~~V~~gspA~~aG-L~~GD~Il~ING~~v~s~~s~~eav~~Lr~~-~~v~L~V-~R~ 190 (433)
.+..++|+.|.. ......+|+.+.+++||++.+ |..||.|+.||++.+- +.++.-+|..++.. .-|.++| .|.
T Consensus 210 kp~eglg~~I~S--sydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvV-gwqlk~vV~sL~~~~sgi~l~lkKrp 285 (638)
T KOG1738|consen 210 SPSEGLGLYIDS--SYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVV-GWQLKVVVSSLRETPAGIELTLKKRP 285 (638)
T ss_pred CcccCCceEEee--ecCCceeccccccCChHHHhhcccCccceeeecccccc-cchhHhHHhhcccCcccceeeeeccC
Confidence 456678887753 224457889999999999877 9999999999999998 88999999998887 3455544 344
No 112
>PF12812 PDZ_1: PDZ-like domain
Probab=88.22 E-value=0.99 Score=36.32 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=32.7
Q ss_pred CeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhc
Q psy12296 19 GVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH 63 (433)
Q Consensus 19 Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~ 63 (433)
|.++.....|+++...|+..|-.|.+|||+++.+.. +.++.++
T Consensus 31 ~gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~Ld--~f~~vvk 73 (78)
T PF12812_consen 31 GGVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDLD--DFIKVVK 73 (78)
T ss_pred CEEEEEecCCChhhhCCCCCCeEEEeECCcCCcCHH--HHHHHHH
Confidence 345556688888888779999999999999999973 3444443
No 113
>KOG3834|consensus
Probab=86.40 E-value=2.6 Score=44.12 Aligned_cols=65 Identities=29% Similarity=0.369 Sum_probs=45.1
Q ss_pred EeEEEEecCCCC---CCeEEEEeCCCCHhHhCCCC-CCCEEEEE-CCEecCCCCHHHHHHHhc--CCcEEEEEEE
Q psy12296 6 LGFSIRGGREHT---TGVFVSNVEPKSEAERSGLL-IGDQIIRI-NGFPIEDATHSEVLQLIH--SQNIISLKVR 73 (433)
Q Consensus 6 LGfsI~gG~~~~---~Gv~Vs~V~pgSpA~~aGL~-~GD~ILaV-NG~~V~~~s~~eav~lL~--~g~~V~L~V~ 73 (433)
||++|+-..... .-.-|-.|.++|||++|||+ .+|-|+.+ |.+ ..+. .++..+|. .++.+.|.|.
T Consensus 94 lGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~-~~~~--eDl~~lIeshe~kpLklyVY 165 (462)
T KOG3834|consen 94 LGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAV-MHEE--EDLFTLIESHEGKPLKLYVY 165 (462)
T ss_pred cceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhh-ccch--HHHHHHHHhccCCCcceeEe
Confidence 888888644322 12446688999999999977 89999988 543 3332 44555554 4788888885
No 114
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=83.00 E-value=4.5 Score=41.30 Aligned_cols=58 Identities=28% Similarity=0.280 Sum_probs=42.3
Q ss_pred EEEECCCChhhhcCCCCCCEEEEEccEecCChhhHHHHHHHhcCCC--eEEEEEEE-CCee
Q psy12296 136 VQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSC--LLELLVHR-GVGL 193 (433)
Q Consensus 136 V~~V~~gspA~~aGL~~GD~Il~ING~~v~s~~s~~eav~~Lr~~~--~v~L~V~R-~~~~ 193 (433)
+..+..+++|..+|+++||+|+++|+.++.+..+....+....... .+.+.+.| ++..
T Consensus 133 ~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 193 (375)
T COG0750 133 VGEVAPKSAAALAGLRPGDRIVAVDGEKVASWDDVRRLLVAAAGDVFNLLTILVIRLDGEA 193 (375)
T ss_pred eeecCCCCHHHHcCCCCCCEEEeECCEEccCHHHHHHHHHhccCCcccceEEEEEecccee
Confidence 4468889999999999999999999999995544444444433323 27888888 4433
No 115
>KOG4371|consensus
Probab=78.67 E-value=1.6 Score=50.07 Aligned_cols=70 Identities=29% Similarity=0.581 Sum_probs=53.2
Q ss_pred eEeEEEEecCCCCCCeEEEEeCCCCHhHhCC-CCCCCEEEEECCEecCCCCHHHHHHHhcC-CcEEEEEEEEc
Q psy12296 5 TLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIHS-QNIISLKVRSV 75 (433)
Q Consensus 5 gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aG-L~~GD~ILaVNG~~V~~~s~~eav~lL~~-g~~V~L~V~R~ 75 (433)
++|+.+.. .....|+||..+...+.|..-| |++||+++..+|+++..++....+..++- .+++.+++.|.
T Consensus 1258 ~~~~~~~~-~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1258 TLGLSLAK-RTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTRE 1329 (1332)
T ss_pred cccccccc-cCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhheehhh
Confidence 56666665 4456789999888888888888 99999999999999999887655544442 35666766553
No 116
>KOG2921|consensus
Probab=70.51 E-value=5.7 Score=41.34 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=39.7
Q ss_pred CCceEEEEECCCChhhh-cCCCCCCEEEEEccEecCChhhHHHHHHH
Q psy12296 131 KPGIFVQFTKDACVAKD-AGLKCGDQILACNGVKFSPDVTFEHAVSV 176 (433)
Q Consensus 131 ~~GV~V~~V~~gspA~~-aGL~~GD~Il~ING~~v~s~~s~~eav~~ 176 (433)
..||.|+.|...||+.- -||.+||+|..+||-++.+..+|-+.++.
T Consensus 219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v~dW~ecl~t 265 (484)
T KOG2921|consen 219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKVSDWLECLAT 265 (484)
T ss_pred CceEEEEeccccCCCcCcccCCccceEEecCCcccCCHHHHHHHHHh
Confidence 56899999999999753 37999999999999999988888887776
No 117
>KOG2921|consensus
Probab=69.42 E-value=4 Score=42.40 Aligned_cols=42 Identities=31% Similarity=0.491 Sum_probs=35.0
Q ss_pred CCCCCeEEEEeCCCCHhHhC-CCCCCCEEEEECCEecCCCCHH
Q psy12296 15 EHTTGVFVSNVEPKSEAERS-GLLIGDQIIRINGFPIEDATHS 56 (433)
Q Consensus 15 ~~~~Gv~Vs~V~pgSpA~~a-GL~~GD~ILaVNG~~V~~~s~~ 56 (433)
..+.|+.|.+|...||+.-- ||.+||+|.++||.+|.+..++
T Consensus 217 a~g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v~dW 259 (484)
T KOG2921|consen 217 AHGEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKVSDW 259 (484)
T ss_pred hcCceEEEEeccccCCCcCcccCCccceEEecCCcccCCHHHH
Confidence 34678999999999997432 6999999999999999997554
No 118
>KOG4407|consensus
Probab=69.20 E-value=2.4 Score=49.80 Aligned_cols=46 Identities=24% Similarity=0.503 Sum_probs=42.7
Q ss_pred CeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcC
Q psy12296 19 GVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS 64 (433)
Q Consensus 19 Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~ 64 (433)
-+||..|.++++|..+.|+.||+|+.||..++.+..-.+++..++.
T Consensus 144 T~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~q 189 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQ 189 (1973)
T ss_pred hhhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhcc
Confidence 3899999999999999999999999999999999888888888876
No 119
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=69.01 E-value=15 Score=34.43 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=31.3
Q ss_pred CCCceeecCCCCCCceEEEEECCCChhhhcCCCCCCEEEEEc
Q psy12296 119 KLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACN 160 (433)
Q Consensus 119 ~LG~~l~gg~~~~~GV~V~~V~~gspA~~aGL~~GD~Il~IN 160 (433)
..|+.+.. ....+.|..|.-||+|+++|+.-++.|++|-
T Consensus 112 ~~GL~l~~---e~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 112 AAGLTLME---EGGKVIVDEVEFGSPAEKAGIDFDWEITEVE 150 (183)
T ss_pred hCCCEEEe---eCCEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence 45776642 2456899999999999999999999888863
No 120
>KOG0792|consensus
Probab=66.04 E-value=2.5 Score=48.76 Aligned_cols=62 Identities=39% Similarity=0.651 Sum_probs=54.3
Q ss_pred CCeEeEEEEecCCCC-----CCeEEEEeC-------------CCCHhHhCC--CCCCCEEEEECCEecCCCCHHHHHHHh
Q psy12296 3 NGTLGFSIRGGREHT-----TGVFVSNVE-------------PKSEAERSG--LLIGDQIIRINGFPIEDATHSEVLQLI 62 (433)
Q Consensus 3 ~~gLGfsI~gG~~~~-----~Gv~Vs~V~-------------pgSpA~~aG--L~~GD~ILaVNG~~V~~~s~~eav~lL 62 (433)
.|.+||.+.||.+.. ..+.++.|. |+++|+... +..||+++.|||..+....+...+.++
T Consensus 715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i 794 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI 794 (1144)
T ss_pred CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence 467899999998875 678888888 999998887 999999999999999999998888887
Q ss_pred cC
Q psy12296 63 HS 64 (433)
Q Consensus 63 ~~ 64 (433)
+.
T Consensus 795 rs 796 (1144)
T KOG0792|consen 795 RS 796 (1144)
T ss_pred hh
Confidence 64
No 121
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=65.37 E-value=9.4 Score=35.80 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=30.4
Q ss_pred EeEEEEecCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEEC
Q psy12296 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRIN 46 (433)
Q Consensus 6 LGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVN 46 (433)
.|+.+.. .+..+.|..|..||+|+++|+.-|++|++|-
T Consensus 113 ~GL~l~~---e~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 113 AGLTLME---EGGKVIVDEVEFGSPAEKAGIDFDWEITEVE 150 (183)
T ss_pred CCCEEEe---eCCEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence 4666663 2345899999999999999999999998763
No 122
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=59.14 E-value=6.7 Score=38.51 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=35.6
Q ss_pred ceeecCCCCCCchhHHHhHHhhh-ccccccCCCcccccccc
Q psy12296 252 PRTLHNGGGGASLSSAISEEIKR-RSERLNSGKEFVKVETT 291 (433)
Q Consensus 252 ~~~l~~~ggg~s~s~~v~~~l~~-~~~~~~~~~~f~~~~~~ 291 (433)
..+++.+++.+|+|++++..|++ .+.+++++.+++|+..+
T Consensus 162 pv~VL~~~~TASAaE~~a~~Lk~~~~a~vIGe~T~Gk~~~~ 202 (256)
T cd07561 162 KVYVLTSGSTASASELVINSLKPYMDVVLIGETTYGKNVGS 202 (256)
T ss_pred cEEEEECCCcccHHHHHHHHhhccCCEEEEeCCCCCCCccc
Confidence 35788899999999999999999 68899999999998665
No 123
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=40.41 E-value=20 Score=33.76 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=35.2
Q ss_pred ceeecCCCCCCchhHHHhHHhhh-ccccccCCCcccccccc
Q psy12296 252 PRTLHNGGGGASLSSAISEEIKR-RSERLNSGKEFVKVETT 291 (433)
Q Consensus 252 ~~~l~~~ggg~s~s~~v~~~l~~-~~~~~~~~~~f~~~~~~ 291 (433)
...++.|++.+|++++++..|++ ....++++.+++++..+
T Consensus 146 pv~vL~~~~taSaaE~~a~~lk~~~~~~vvG~~T~G~~~~~ 186 (224)
T cd06567 146 PLVVLVNEGSASASEIFAGALQDLGRATLVGERTFGKGSVQ 186 (224)
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCeEEEeeCCCCCCcce
Confidence 45788899999999999999999 68899999999999743
No 124
>KOG1365|consensus
Probab=36.10 E-value=27 Score=36.29 Aligned_cols=40 Identities=30% Similarity=0.397 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHHHHhccCCCCccccc---------cccCCCCCCCCCCCC
Q psy12296 301 YHLKLQTLMKEVKEAHNKMFPGSQEEKD---------KCSDSPPSCPTPDYD 343 (433)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 343 (433)
+-+.|.|+| |+-|-..|+.+-+|-. ..-+.||+||-|-|+
T Consensus 341 aqk~hk~~m---k~RYiEvfp~S~eeln~vL~~g~~g~~~q~PPP~plp~~g 389 (508)
T KOG1365|consen 341 AQKCHKKLM---KSRYIEVFPCSVEELNEVLSGGLVGQQHQVPPPAPLPFMG 389 (508)
T ss_pred HHHHHHhhc---ccceEEEeeccHHHHHHHHhcCcccccCCCCCCCCccccC
Confidence 666788898 6777788998865543 347889999999876
No 125
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=34.18 E-value=29 Score=22.59 Aligned_cols=13 Identities=38% Similarity=0.611 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhcc
Q psy12296 307 TLMKEVKEAHNKM 319 (433)
Q Consensus 307 ~~~~~~~~~~~~~ 319 (433)
+=++|||+.|+|.
T Consensus 14 ~rlk~Ike~Hrr~ 26 (28)
T PF12108_consen 14 ERLKEIKEYHRRY 26 (28)
T ss_dssp HHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhC
Confidence 4578999999984
No 126
>smart00245 TSPc tail specific protease. tail specific protease
Probab=31.55 E-value=35 Score=31.65 Aligned_cols=40 Identities=20% Similarity=0.172 Sum_probs=34.8
Q ss_pred ceeecCCCCCCchhHHHhHHhhh-ccccccCCCcccccccc
Q psy12296 252 PRTLHNGGGGASLSSAISEEIKR-RSERLNSGKEFVKVETT 291 (433)
Q Consensus 252 ~~~l~~~ggg~s~s~~v~~~l~~-~~~~~~~~~~f~~~~~~ 291 (433)
..+++.++..+|++++++..|++ ...+++++.+++++..+
T Consensus 114 pv~vL~~~~TaSaaE~~a~~lk~~~~a~viG~~T~G~~~~~ 154 (192)
T smart00245 114 PLVVLVNEGTASASEIFAGALKDLGRALIVGERTFGKGLVQ 154 (192)
T ss_pred CEEEEECCCCeeHHHHHHHHHhhCCCEEEEecCCcCCccee
Confidence 45788899999999999999998 68889999999988544
No 127
>KOG0792|consensus
Probab=29.28 E-value=23 Score=41.29 Aligned_cols=68 Identities=26% Similarity=0.390 Sum_probs=53.4
Q ss_pred EeeCCCCCCCceeecCCCCC-----CceEEEEEC-------------CCChhhhcC--CCCCCEEEEEccEecCChhhHH
Q psy12296 112 LEVPPHGKLGCGICKGPQWK-----PGIFVQFTK-------------DACVAKDAG--LKCGDQILACNGVKFSPDVTFE 171 (433)
Q Consensus 112 L~~~~~~~LG~~l~gg~~~~-----~GV~V~~V~-------------~gspA~~aG--L~~GD~Il~ING~~v~s~~s~~ 171 (433)
|..++.+.+|+-+.|+.+.. ..+.+..+. ++++|+... +-.||.++.|||.++. ...++
T Consensus 710 ~~~~~~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~-~~~~~ 788 (1144)
T KOG0792|consen 710 LAEDPPGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVS-ESEHD 788 (1144)
T ss_pred cccCCCccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccc-ccccc
Confidence 44445778898888775443 456677777 888887766 8999999999999999 88889
Q ss_pred HHHHHhcCC
Q psy12296 172 HAVSVMKSS 180 (433)
Q Consensus 172 eav~~Lr~~ 180 (433)
..+..++..
T Consensus 789 ~~vs~irs~ 797 (1144)
T KOG0792|consen 789 QVVSLIRSP 797 (1144)
T ss_pred chHHHHhhh
Confidence 998888765
No 128
>KOG1703|consensus
Probab=28.36 E-value=23 Score=37.94 Aligned_cols=70 Identities=27% Similarity=0.381 Sum_probs=55.9
Q ss_pred eEeEEEEecCCCCCCeEEEEeCCCCHhHhCCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CcEEEEEEEEc
Q psy12296 5 TLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS-QNIISLKVRSV 75 (433)
Q Consensus 5 gLGfsI~gG~~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~~~s~~eav~lL~~-g~~V~L~V~R~ 75 (433)
+|||.+.+| +....+-|..+.+++.++.+.+..+|.|..++|..-..+.+.++....+. +....+.+.|.
T Consensus 9 ~~~~r~~~~-~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 79 (479)
T KOG1703|consen 9 PWGFRLQGG-DFLQPLRILRVTPGGKAADAELDPGDIIAAIDGENEETMTHLEAQNKIKGSGSQLALTLSRS 79 (479)
T ss_pred Cceeeeccc-ccccccceeccCCCCccccccccccccccccccccccccccccccCcccccccccccccccc
Confidence 678887775 54556888999999999999999999999999999988888777766543 55666777664
No 129
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=27.59 E-value=39 Score=34.44 Aligned_cols=30 Identities=43% Similarity=0.769 Sum_probs=26.2
Q ss_pred EEEeCCCCHhHhCCCCCCCEEEEECCEecC
Q psy12296 22 VSNVEPKSEAERSGLLIGDQIIRINGFPIE 51 (433)
Q Consensus 22 Vs~V~pgSpA~~aGL~~GD~ILaVNG~~V~ 51 (433)
+-.|.+.++|+++|.-.||-|+.||+-++.
T Consensus 67 ~lrv~~~~~~e~~~~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 67 VLRVNPESPAEKAGMVVGDYILGINEDPLR 96 (417)
T ss_pred heeccccChhHhhccccceeEEeecCCcHH
Confidence 456788999999999999999999986664
No 130
>PF15471 TMEM171: Transmembrane protein family 171
Probab=24.23 E-value=69 Score=31.90 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=13.4
Q ss_pred eecccccccC-----cCCCCCCCcccCC
Q psy12296 358 MASFKSFSAA-----PAPAKPPPVYFPP 380 (433)
Q Consensus 358 ~~~~~~~~~~-----~~~~~~~~~~~~~ 380 (433)
.||-|+|+.| -+-|.|||-||.-
T Consensus 202 ~qs~Ep~qVTVGDaViiFPPPPPPYF~e 229 (319)
T PF15471_consen 202 TQSTEPVQVTVGDAVIIFPPPPPPYFPE 229 (319)
T ss_pred CCCCCCEEEEecCEEEEcCCccCCCCCC
Confidence 3555666666 2345666667754
No 131
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=23.60 E-value=60 Score=30.79 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=35.0
Q ss_pred CceeecCCCCCCchhHHHhHHhhh-ccccccCCCcccccccc
Q psy12296 251 EPRTLHNGGGGASLSSAISEEIKR-RSERLNSGKEFVKVETT 291 (433)
Q Consensus 251 ~~~~l~~~ggg~s~s~~v~~~l~~-~~~~~~~~~~f~~~~~~ 291 (433)
...+++.++..+|+++.++..|+. ....++++++.+++..+
T Consensus 132 ~pvvVLvn~~TaSaaE~~a~~lk~~~~~~vIG~~T~G~~~~~ 173 (211)
T cd07560 132 GPLVVLVNGGSASASEIVAGALQDNGRAVLVGERTFGKGSVQ 173 (211)
T ss_pred CCEEEEeCCCcccHHHHHHHHHhhcCCEEEEecCCCCCCeee
Confidence 345788899999999999999999 68889999999987544
No 132
>cd04459 Rho_CSD Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA are released from DNA template by an mRNA stem loop structure, which resembles the transcription termination mechanism used by eukaryotic pol III. The second mechanism is mediated by Rho factor. Rho factor terminates transcription by using energy from ATP hydrolysis to forcibly dissociate the transcripts from RNA polymerase. Rho protein contains an N-terminal S1-like domain, which binds single-stranded RNA. Rho has a C-terminal ATPase domain which hydrolyzes ATP to provide energy to strip RNA polymerase and mRNA from the DNA template. Rho functions as a homohexamer.
Probab=22.16 E-value=1.2e+02 Score=23.86 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=25.6
Q ss_pred CCeEeEEEEecC---CCCCCeEEEEeCCCCHhHhCCCCCCCEEEE
Q psy12296 3 NGTLGFSIRGGR---EHTTGVFVSNVEPKSEAERSGLLIGDQIIR 44 (433)
Q Consensus 3 ~~gLGfsI~gG~---~~~~Gv~Vs~V~pgSpA~~aGL~~GD~ILa 44 (433)
..++||--..+. ..+.-+||+ .+.-.+.||+.||.|..
T Consensus 9 ~~g~GFLR~~~~~y~~~~~DvyVs----~~~Irr~~LR~GD~V~G 49 (68)
T cd04459 9 PDGFGFLRSSGYNYLPGPDDIYVS----PSQIRRFNLRTGDTVVG 49 (68)
T ss_pred CCCceEEecCCcCCCCCCCCEEEC----HHHHHHhCCCCCCEEEE
Confidence 457887655422 334558874 45677889999999975
Done!