RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12296
(433 letters)
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 117 bits (296), Expect = 2e-31
Identities = 40/197 (20%), Positives = 72/197 (36%), Gaps = 27/197 (13%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQL 61
TLG ++ GG + VSN+ A RS L +GD I +NG + H E++ L
Sbjct: 18 GTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISL 77
Query: 62 I-HSQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVPPHGKL 120
+ + + L+V + + F V +TL +
Sbjct: 78 LKNVGERVVLEVE---------YELPPVSIQ--------GSSVMFRTVEVTLHKEGNT-F 119
Query: 121 GC----GICKGPQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVS 175
G G + + ++ +K GD++L+ +G++ T A+S
Sbjct: 120 GFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLL-GTTHAEAMS 178
Query: 176 VMKSSC-LLELLVHRGV 191
++K LL+ V
Sbjct: 179 ILKQCGQEATLLIEYDV 195
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 115 bits (288), Expect = 2e-30
Identities = 41/97 (42%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
LG S+RGG E G+F+S++ +A+ GL +GD+I+RING+ I TH EV+ LI
Sbjct: 95 PEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLI 154
Query: 63 HSQNIISLKVRSVGMIPTKER-DKSVTWKFVDTNKSN 98
++ +S+KVR +G+IP K D+ +TW++VD S
Sbjct: 155 RTEKTVSIKVRHIGLIPVKSSPDEPLTWQYVDQFVSE 191
Score = 60.3 bits (146), Expect = 6e-11
Identities = 24/155 (15%), Positives = 60/155 (38%), Gaps = 11/155 (7%)
Query: 45 INGFPIEDATHSEVLQLI---HSQNIISLKVRSVGMIPTKERDKSVTW--KFVDTNKSNL 99
++ DA + ++ H +++ V + ++ + + + + K +
Sbjct: 13 VDFLIENDAEKDYLYDVLRMYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQV 72
Query: 100 NQNERFPVVP-----ITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGD 154
++ P + L+ LG + G ++ G+F+ A GL+ GD
Sbjct: 73 EYDQLTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGD 132
Query: 155 QILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHR 189
+I+ NG S T E ++++++ + + V
Sbjct: 133 EIVRINGYSIS-SCTHEEVINLIRTEKTVSIKVRH 166
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 115 bits (289), Expect = 2e-30
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 30/197 (15%)
Query: 3 NGTLGFSIRGGR----EHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSE 57
G ++G ++ +S +E S AER G+L IGD+++ ING P ED+T E
Sbjct: 17 VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEE 76
Query: 58 VLQLIH-SQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVPP 116
QL+ S + + + V + + L
Sbjct: 77 ANQLLRDSSITSKVTLE---------IEFDVAESVI----------PSSGTFHVKLPKKH 117
Query: 117 HGKLGCGICKGPQWKP--GIFVQFTKDACVA-KDAGLKCGDQILACNGVKFSPDVTFEHA 173
+LG I KP + + K VA + L+ GD++LA + ++ + E A
Sbjct: 118 SVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLD-SCSMEDA 176
Query: 174 VSVMKSSC-LLELLVHR 189
V +++ L++L + +
Sbjct: 177 VQILQQCEDLVKLKIRK 193
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 109 bits (274), Expect = 2e-29
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
G LGFS+RGG EH G+FVS VE S AER+GL +GD+I +NG +E T ++++
Sbjct: 21 AGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVL 80
Query: 63 HSQNIISLKVRSVGMIP 79
S + + + VR +G P
Sbjct: 81 TSSSRLHMMVRRMGSGP 97
Score = 66.2 bits (162), Expect = 8e-14
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVT 169
+ +E P G+LG + G + GIFV ++ A+ AGL GD+I NG+ T
Sbjct: 14 VRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLE-STT 72
Query: 170 FEHAVSVMKSSCLLELLVHRG 190
AV V+ SS L ++V R
Sbjct: 73 MGSAVKVLTSSSRLHMMVRRM 93
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 105 bits (264), Expect = 7e-28
Identities = 35/80 (43%), Positives = 48/80 (60%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
+ LGFSIRGG EH G++VS VEP S AE+ GL +GDQI+R+N + TH+E ++ +
Sbjct: 20 HEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKAL 79
Query: 63 HSQNIISLKVRSVGMIPTKE 82
+ L V S G I
Sbjct: 80 KGSKKLVLSVYSAGRISGPS 99
Score = 60.1 bits (146), Expect = 1e-11
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSP 166
+V + G LG I G + GI+V + +A+ GL+ GDQIL N +
Sbjct: 11 LVSLRRAKAHEG-LGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLA- 68
Query: 167 DVTFEHAVSVMKSSCLLELLVHRGVGLDLFPGGSSG 202
VT AV +K S L L V+ G SSG
Sbjct: 69 RVTHAEAVKALKGSKKLVLSVYS---AGRISGPSSG 101
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 107 bits (268), Expect = 2e-27
Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 41/201 (20%)
Query: 3 NGTLGFSIRGGREH-----TTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHS 56
N LGFSI GG ++ +F++ + P A + G L + D I+ +N + + THS
Sbjct: 15 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 74
Query: 57 EVLQLIH-SQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVP 115
++ + + +I+ L V + V+ I L
Sbjct: 75 AAVEALKEAGSIVRLYVMR-------------------------RKPPAEKVMEIKLIKG 109
Query: 116 PHGKLGCGICKG-----PQWKPGIFVQFTKDACVA-KDAGLKCGDQILACNGVKFSPDVT 169
P G LG I G I+V + A KD L+ GD+ILA N V DV
Sbjct: 110 PKG-LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLE-DVM 167
Query: 170 FEHAVSVMKSSC-LLELLVHR 189
E AV+ +K++ ++ L V +
Sbjct: 168 HEDAVAALKNTYDVVYLKVAK 188
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 101 bits (254), Expect = 3e-26
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
+LG +IRGG E+ G++++ V+P SEAE SGL +GDQI+ +NG + H E ++L+
Sbjct: 31 GRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLL 90
Query: 63 HSQNIISLKVRSVGMIP-TKERDKSVTWKFVDTN 95
S + L V+ VG +P + W +
Sbjct: 91 KSSRHLILTVKDVGRLPHARTTVDETKWIASSSG 124
Score = 63.3 bits (154), Expect = 2e-12
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVT 169
+ L + LG I G ++ GI++ A+ +GLK GDQIL NG F ++
Sbjct: 24 VNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFL-NIL 82
Query: 170 FEHAVSVMKSSCLLELLVHRGVGLDLFPGGSSGYNSSTSS 209
+ AV ++KSS L L V L SS
Sbjct: 83 HDEAVRLLKSSRHLILTVKDVGRLPHARTTVDETKWIASS 122
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 96.3 bits (240), Expect = 1e-24
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
LGF+IRGG+ G+F+S V P S+A R+GL GDQ++ +N +D HS+ ++++
Sbjct: 26 GAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEIL 85
Query: 63 HSQNIISLKVR 73
+ IS++VR
Sbjct: 86 KTAREISMRVR 96
Score = 78.9 bits (195), Expect = 3e-18
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 94 TNKSNLNQNERFPVVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCG 153
+ S N+ +F +TL+ PP +LG I G + GIF+ A AGL+ G
Sbjct: 3 SGSSGNNELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEG 62
Query: 154 DQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLFPGGSSG 202
DQ+LA N V F D+ AV ++K++ + + V F G SSG
Sbjct: 63 DQVLAVNDVDFQ-DIEHSKAVEILKTAREISMRVRF------FSGPSSG 104
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 94.6 bits (236), Expect = 5e-24
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH-S 64
GF + GGR+ + + +S V S+A + L GD I ING E TH E I
Sbjct: 20 WGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGC 79
Query: 65 QNIISLKVRSVG 76
+ ++L V S
Sbjct: 80 HDHLTLSVSSGP 91
Score = 43.8 bits (104), Expect = 6e-06
Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 10/84 (11%)
Query: 120 LGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKS 179
G + G + + + A A L GD I A NG +T A + +K
Sbjct: 20 WGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTE-LMTHLEAQNRIKG 78
Query: 180 SC-LLELLVHRGVGLDLFPGGSSG 202
L L V G SSG
Sbjct: 79 CHDHLTLSVSS--------GPSSG 94
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 93.5 bits (233), Expect = 1e-23
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI-HS 64
GF ++GG++ + +S + P S+A +S L GD ++ I+G + TH E I +
Sbjct: 13 WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA 72
Query: 65 QNIISLKVRSVG 76
+SL ++
Sbjct: 73 SYNLSLTLQKSK 84
Score = 46.5 bits (111), Expect = 5e-07
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 109 PITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDV 168
++ + G G + G + + + A + L GD ++A +GV +
Sbjct: 2 AYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTD-TM 60
Query: 169 TFEHAVSVMKSSC-LLELLVHRG 190
T A + +KS+ L L + +
Sbjct: 61 THLEAQNKIKSASYNLSLTLQKS 83
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 92.8 bits (231), Expect = 2e-23
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI-HS 64
GF ++GG++ + +S + P +A ++G+ +GD ++ I+G TH E I
Sbjct: 15 WGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRAC 74
Query: 65 QNIISLKVR 73
+SL +
Sbjct: 75 GERLSLGLS 83
Score = 44.6 bits (106), Expect = 3e-06
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 108 VPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPD 167
+ LE P G + G + + + A AG+ GD +L+ +G
Sbjct: 5 FKVVLEGP--APWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAG-S 61
Query: 168 VTFEHAVSVMKSSC-LLELLVHRGVG 192
+T A + +++ L L + R +
Sbjct: 62 LTHIEAQNKIRACGERLSLGLSRAIT 87
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 91.6 bits (228), Expect = 4e-23
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI-HS 64
GF I GGR+ T + V+ V + +A+ + L GD I+ ING E H+E I S
Sbjct: 14 WGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQS 73
Query: 65 QNIISLKVR 73
+ + L++
Sbjct: 74 PSPLRLQLD 82
Score = 46.1 bits (110), Expect = 6e-07
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 109 PITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDV 168
+T++V G I G + I V + AKDA L+ GD I+A NG +
Sbjct: 3 ALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAE-GM 61
Query: 169 TFEHAVSVMKSSC-LLELLVHRGVGL 193
A S ++ S L L + R L
Sbjct: 62 LHAEAQSKIRQSPSPLRLQLDRITSL 87
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 91.2 bits (227), Expect = 6e-23
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
G LG SI+GGRE+ + +S + A+++ L +GD I+ +NG + ATH E +Q
Sbjct: 15 AGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQA 74
Query: 62 I-HSQNIISLKVRSV 75
+ + + L+V+ +
Sbjct: 75 LKKTGKEVVLEVKYM 89
Score = 49.6 bits (119), Expect = 4e-08
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDV 168
+T+ G LG I G + K I + + K + L GD IL+ NG S
Sbjct: 8 VTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLS-SA 66
Query: 169 TFEHAVSVMKSSC-LLELLVHR 189
T + AV +K + + L V
Sbjct: 67 THDEAVQALKKTGKEVVLEVKY 88
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma
homolog, phosphorylation, signaling PR LIM domain, PDZ
domain; 1.5A {Homo sapiens}
Length = 88
Score = 91.2 bits (227), Expect = 7e-23
Identities = 15/69 (21%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI-HS 64
GF ++GG++ + +S+++ +A ++ + IGD ++ I+G + TH E I
Sbjct: 15 WGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC 74
Query: 65 QNIISLKVR 73
+++ ++
Sbjct: 75 TGSLNMTLQ 83
Score = 52.7 bits (127), Expect = 3e-09
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVT 169
++ + G + G + + + KD A A ++ GD +L+ +G+ +T
Sbjct: 5 YSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQ-GMT 63
Query: 170 FEHAVSVMKSSC-LLELLVHRG 190
A + +K L + + R
Sbjct: 64 HLEAQNKIKGCTGSLNMTLQRE 85
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 90.4 bits (225), Expect = 2e-22
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI-HS 64
GF I GGR+ T + V+ V + +AE + L GD I+ ING E+ H+E I S
Sbjct: 18 WGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQS 77
Query: 65 QNIISLKVR 73
+ + L++
Sbjct: 78 ASPLRLQLD 86
Score = 45.0 bits (107), Expect = 2e-06
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 109 PITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDV 168
+T++V G I G + I V + A+ A L+ GD I+A NG ++
Sbjct: 7 GLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAE-NM 65
Query: 169 TFEHAVSVMKSSC-LLELLVHRGVG 192
A S ++ S L L + R G
Sbjct: 66 LHAEAQSKIRQSASPLRLQLDRSSG 90
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing
isoform B; GOPC PDZ domain, structural protein; NMR
{Homo sapiens}
Length = 103
Score = 90.5 bits (225), Expect = 2e-22
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
+ LG SI GG+EH + +S + P A+R G L +GD I+ +NG + D H E + +
Sbjct: 20 HEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTI 79
Query: 62 I-HSQNIISLKVRSVGM 77
+ + I +V V +
Sbjct: 80 LSQQRGEIEFEVVYVAL 96
Score = 49.7 bits (119), Expect = 5e-08
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 106 PVVPITLEVPPHGKLGCGICKGPQWKPGIFV-QFTKDACVAKDAGLKCGDQILACNGVKF 164
P+ + L H LG I G + I + + + GL GD ILA NGV
Sbjct: 9 PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNL 68
Query: 165 SPDVTFEHAVSVMKSSC-LLELLVHR 189
D + AV+++ +E V
Sbjct: 69 R-DTKHKEAVTILSQQRGEIEFEVVY 93
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 90.1 bits (224), Expect = 3e-22
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH-S 64
GF + GG + + ++ + P S+A + L GD I+ I+GF E TH++ I +
Sbjct: 17 WGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA 76
Query: 65 QNIISLKVR 73
+ LK+
Sbjct: 77 SYQLCLKID 85
Score = 45.0 bits (107), Expect = 2e-06
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 2/94 (2%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVT 169
+ +P G + G + + + A A L GD ILA +G +T
Sbjct: 7 GNVVLPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTE-SMT 65
Query: 170 FEHAVSVMKSSC-LLELLVHRGVGLDLFPGGSSG 202
A +K++ L L + R P SSG
Sbjct: 66 HADAQDRIKAASYQLCLKIDRAETRLWSPQVSSG 99
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 89.3 bits (222), Expect = 3e-22
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH-S 64
GF + GG++ + +S V P S+A + L IGD I I+G + TH E I
Sbjct: 15 WGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGC 74
Query: 65 QNIISLKVR 73
+ ++L V
Sbjct: 75 TDNLTLTVA 83
Score = 46.2 bits (110), Expect = 7e-07
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSP 166
I L+ P G G + G ++ + + A A L GD I A +G S
Sbjct: 4 TQQIDLQGP--GPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTS- 60
Query: 167 DVTFEHAVSVMKSSC-LLELLVHRG 190
++T A + +K L L V R
Sbjct: 61 NMTHLEAQNRIKGCTDNLTLTVARS 85
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 89.3 bits (222), Expect = 5e-22
Identities = 15/69 (21%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH-S 64
GF ++GG++ + +S+++ +A ++ + IGD ++ I+G + TH E I
Sbjct: 17 WGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC 76
Query: 65 QNIISLKVR 73
+++ ++
Sbjct: 77 TGSLNMTLQ 85
Score = 43.9 bits (104), Expect = 6e-06
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 120 LGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKS 179
G + G + + + KD A A ++ GD +L+ +G+ +T A + +K+
Sbjct: 17 WGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQ-GMTHLEAQNKIKA 75
Query: 180 SC-LLELLVHRGVGLDLFPGGSSGYNS 205
L + + R SSG +S
Sbjct: 76 CTGSLNMTLQRASAAAKSEPVSSGPSS 102
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 89.5 bits (222), Expect = 6e-22
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQ 65
LG SI G G+F+S+V+P S + GL IGDQI+ +NG + H E + ++ S
Sbjct: 29 LGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS 88
Query: 66 NIISLKVRSVGMIPTKERDKS 86
+++ + + D+S
Sbjct: 89 RSLTISIVAAAGRELFMTDRS 109
Score = 79.1 bits (195), Expect = 3e-18
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVT 169
+ + + LGC I GP KPGIF+ K ++ + GL+ GDQI+ NGV FS ++
Sbjct: 19 VFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFS-NLD 77
Query: 170 FEHAVSVMKSSCLLELLVHRGVGLDLFPGGSSG 202
+ AV+V+KSS L + + G +LF SG
Sbjct: 78 HKEAVNVLKSSRSLTISIVAAAGRELFMTDRSG 110
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 88.3 bits (219), Expect = 1e-21
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
+ LG SI GG+EH + +S + P A+R G L +GD I+ +NG + D H E + +
Sbjct: 38 HEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTI 97
Query: 62 I-HSQNIISLKVR 73
+ + I +V
Sbjct: 98 LSQQRGEIEFEVV 110
Score = 47.1 bits (112), Expect = 5e-07
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDV 168
+ L H LG I G + I + + + GL GD ILA NGV D
Sbjct: 31 VLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR-DT 89
Query: 169 TFEHAVSVMKSS 180
+ AV+++
Sbjct: 90 KHKEAVTILSQQ 101
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 85.0 bits (211), Expect = 1e-20
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
+ LGF+I GG+E + +++S V P A+R G L GDQ++ +NG +E H + ++L
Sbjct: 15 DEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVEL 74
Query: 62 I-HSQNIISLKVRS 74
+ +Q + L VRS
Sbjct: 75 LKAAQGSVKLVVRS 88
Score = 44.9 bits (107), Expect = 2e-06
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFSPDV 168
+ L G LG I G + I++ + GLK GDQ+L+ NGV
Sbjct: 9 VELPKTDEG-LGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVE-GE 66
Query: 169 TFEHAVSVMKSSC-LLELLVHRG 190
E AV ++K++ ++L+V G
Sbjct: 67 QHEKAVELLKAAQGSVKLVVRSG 89
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 85.6 bits (212), Expect = 2e-20
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
+G SI GG ++ +++ V + A G + GD+I +NG I+ T EV ++
Sbjct: 30 QNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKM 89
Query: 62 I-HSQNIISLKVRSVGMIP 79
I + +++ + P
Sbjct: 90 IQEVKGEVTIHYNKLQADP 108
Score = 48.2 bits (115), Expect = 3e-07
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDV 168
+TL+ +G I G Q+ P +++ Q + A D + GD+I NG
Sbjct: 23 VTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIK-GK 81
Query: 169 TFEHAVSVMKSS 180
T +++
Sbjct: 82 TKVEVAKMIQEV 93
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 84.3 bits (209), Expect = 3e-20
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
GF++ G R V V +V P A ++G+ GD+II++NG + +++H EV++LI
Sbjct: 18 QHGFGFTVSGDR----IVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLI 73
Query: 63 HSQNIISLKVRSVGMIPT 80
S ++L + P+
Sbjct: 74 KSGAYVALTLLGSSSGPS 91
Score = 42.3 bits (100), Expect = 1e-05
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 132 PGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGV 191
+ VQ + A AG+K GD+I+ NG + + + V ++KS + L +
Sbjct: 29 RIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVT-NSSHLEVVKLIKSGAYVALTL---- 83
Query: 192 GLDLFPGGSSG 202
L G SSG
Sbjct: 84 -LGSSSGPSSG 93
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 84.9 bits (210), Expect = 3e-20
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERS--GLLIGDQIIRINGFPIEDATHSEVLQ 60
NG GF+++GG + V VS V P + A+ L GDQ++ ING I + TH +V+
Sbjct: 26 NGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVL 85
Query: 61 LIHS-----QNIISLKVRSVGMIPTKERD 84
I + + L VR + E
Sbjct: 86 FIKASCERHSGELMLLVRPNAVYDVVEES 114
Score = 46.8 bits (111), Expect = 8e-07
Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 10/118 (8%)
Query: 94 TNKSNLNQNERFPVVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVA--KDAGLK 151
+ S +V I ++ +G+ G + G K + V A L
Sbjct: 3 SGSSGNGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLN 62
Query: 152 CGDQILACNGVKFSPDVTFEHAVSVMKSSC-----LLELLVHRGVGLDLF--PGGSSG 202
GDQ++ NG + + T + V +K+SC L LLV D+ G SSG
Sbjct: 63 EGDQVVLINGRDIA-EHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEESGPSSG 119
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 87.6 bits (217), Expect = 3e-20
Identities = 39/194 (20%), Positives = 66/194 (34%), Gaps = 34/194 (17%)
Query: 3 NGTLGFSIRGGREH--TTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDA--THSE 57
+G + GG+ + TTG +++V P+ + L I D I ING PI T +
Sbjct: 28 KKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLK 87
Query: 58 VLQLIHSQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVPPH 117
V QL H+ + T R + + L
Sbjct: 88 VHQLFHT-------TYEKAVTLTVFRADPPELEK----------------FNVDLMKKAG 124
Query: 118 GKLGCGICKGPQWKPGIFVQFTKDACVA-KDAGLKCGDQILACNGVKFSPDVTFEHAVSV 176
+LG + + G + D+ L+ GD I NG + F+ ++
Sbjct: 125 KELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALE-GLPFQVCYAL 180
Query: 177 MKSSC-LLELLVHR 189
K + + + V R
Sbjct: 181 FKGANGKVSMEVTR 194
Score = 63.8 bits (155), Expect = 5e-12
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQLI-H 63
LG S+ G ++++ E L GD I + NG +E L
Sbjct: 127 LGLSLSPNEI---GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG 183
Query: 64 SQNIISLKVRSVGMIPTKERDKS 86
+ +S++V E K+
Sbjct: 184 ANGKVSMEVTRPKPTLRTEAPKA 206
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 84.3 bits (209), Expect = 3e-20
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
GFSIRGGRE+ ++V + A R+G + +GDQII ING D TH+ ++L
Sbjct: 21 AKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIEL 80
Query: 62 I-HSQNIISLKV-RSVGMIPT 80
I + L + R G P+
Sbjct: 81 IKSGGRRVRLLLKRGTGSGPS 101
Score = 49.2 bits (118), Expect = 7e-08
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 97 SNLNQNERFPVVPITLEVPPHGKLGCGICKGPQWKPGIFV-QFTKDACVAKDAGLKCGDQ 155
S+ + + F + +E G G I G ++K ++V + +D ++ ++ GDQ
Sbjct: 2 SSGSSGQDFDYFTVDMEKGAKG-FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQ 60
Query: 156 ILACNGVKFSPDVTFEHAVSVMKSS-CLLELLVHRGVG 192
I+ NG D+T A+ ++KS + LL+ RG G
Sbjct: 61 IIEINGESTR-DMTHARAIELIKSGGRRVRLLLKRGTG 97
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding;
1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 83.9 bits (208), Expect = 4e-20
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
G LG +I G E + +S++ AER+G + IGD+I+ IN ++ SE + L
Sbjct: 15 GGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHL 74
Query: 62 I-HSQNIISLKVR 73
+ + ++LK++
Sbjct: 75 LQMAGETVTLKIK 87
Score = 38.8 bits (91), Expect = 3e-04
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFS 165
+ + L+ LG I + I + TK + + GD+ILA N
Sbjct: 6 IYTVELKRYGGP-LGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLK 64
Query: 166 PDVTFEHAVSVMKSSC-LLELLVHRGV 191
A+ +++ + + L + +
Sbjct: 65 -GKPLSEAIHLLQMAGETVTLKIKKQT 90
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 83.6 bits (207), Expect = 4e-20
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS- 64
GF+I+ G+FV++VE S AE S L + D+II IN E + +
Sbjct: 19 FGFTIKWDIP---GIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKA 75
Query: 65 --QNIISLKVRSVG 76
+ + VR G
Sbjct: 76 QETGHLVMDVRRYG 89
Score = 59.0 bits (143), Expect = 2e-11
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 104 RFPVVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVK 163
+F + I++ P L G PGIFV + A+ + L+ D+I+A N K
Sbjct: 1 QFSDMRISINQTPGKSLDFGFTIKWD-IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTK 59
Query: 164 FSPDVTFEHAVSVMKSSC---LLELLVHR 189
FS + M + L + V R
Sbjct: 60 FS-YNDSKEWEEAMAKAQETGHLVMDVRR 87
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 83.9 bits (208), Expect = 5e-20
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQL 61
GFS+RGGRE+ ++V + AERSG + IGD+I+ ING ++ HS ++L
Sbjct: 34 AKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIEL 93
Query: 62 I-HSQNIISLKVR 73
I + + L ++
Sbjct: 94 IKNGGRRVRLFLK 106
Score = 45.4 bits (108), Expect = 2e-06
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDV 168
+ LE G G + G ++ ++V + +D + ++ GD+IL NG ++
Sbjct: 28 VELERGAKG-FGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTK-NM 85
Query: 169 TFEHAVSVMKSS-CLLELLVHRG 190
A+ ++K+ + L + RG
Sbjct: 86 KHSRAIELIKNGGRRVRLFLKRG 108
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 84.0 bits (208), Expect = 6e-20
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
+G SI GG ++ +++ V + A G + GD+I +NG I+ T EV ++
Sbjct: 35 QNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKM 94
Query: 62 I-HSQNIISLKVRSV 75
I + +++ +
Sbjct: 95 IQEVKGEVTIHYNKL 109
Score = 50.5 bits (121), Expect = 3e-08
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 92 VDTNKSNLNQNERFPVVPITLEVPPHGKLGCGICKGPQWKPGIFV-QFTKDACVAKDAGL 150
VD NL P +TL+ +G I G Q+ P +++ Q + A D +
Sbjct: 11 VDLGTENLYFQSMVPGK-VTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTV 69
Query: 151 KCGDQILACNGVKFSPDVTFEHAVSVMKSS 180
GD+I NG T +++
Sbjct: 70 AAGDEITGVNGRSIK-GKTKVEVAKMIQEV 98
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 83.7 bits (207), Expect = 7e-20
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERS--GLLIGDQIIRINGFPIEDATHSEVLQ 60
NG GF+++GG + V VS V P + A+ L GDQ++ ING I + TH +V+
Sbjct: 28 NGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVL 87
Query: 61 LIHS-----QNIISLKVR 73
I + + L VR
Sbjct: 88 FIKASCERHSGELMLLVR 105
Score = 42.1 bits (99), Expect = 3e-05
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVA--KDAGLKCGDQILACNGVKF 164
+V I ++ +G+ G + G K + V A L GDQ++ NG
Sbjct: 18 LVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDI 77
Query: 165 SPDVTFEHAVSVMKSSC-----LLELLV 187
+ + T + V +K+SC L LLV
Sbjct: 78 A-EHTHDQVVLFIKASCERHSGELMLLV 104
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 82.3 bits (204), Expect = 2e-19
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 14/92 (15%)
Query: 3 NGTLGFSIRGGREHT------TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHS 56
G LG SI GG+ T G+F+S V + A R+G+ +GD+++ +NG ++ A H
Sbjct: 13 TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHH 72
Query: 57 EVLQLI-HSQNIISLKVRSVGMIPTKERDKSV 87
E ++ + + + ++V +ER+ SV
Sbjct: 73 EAVEALRGAGTAVQMRVW-------RERETSV 97
Score = 42.3 bits (100), Expect = 2e-05
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 131 KPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSC-LLELLVHR 189
GIF+ + A AG++ GD++L NGV AV ++ + +++ V R
Sbjct: 33 DEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQ-GAEHHEAVEALRGAGTAVQMRVWR 91
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 82.2 bits (203), Expect = 2e-19
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 3 NGTLGFSIRGGREHT------------TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
+ GF +RG + T ++ +V+ A R+GL +GD +I +NG +
Sbjct: 18 SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNV 77
Query: 51 EDATHSEVLQLIH-SQNIISLKVRSVGMIP 79
H +V+ +I N + +KV V P
Sbjct: 78 VKVGHRQVVNMIRQGGNTLMVKVVMVTRHP 107
Score = 39.8 bits (93), Expect = 2e-04
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 127 GPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLEL 185
P + +++ + VA AGL+ GD ++ NG V V++++ L +
Sbjct: 40 TPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVV-KVGHRQVVNMIRQGGNTLMV 98
Query: 186 LVHRG 190
V
Sbjct: 99 KVVMV 103
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 81.6 bits (202), Expect = 3e-19
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 3 NGTLGFSIRGGREHTT------------GVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
GF++RG VS V P A+R+G+ GD+I+ +NG +
Sbjct: 16 ESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNV 75
Query: 51 EDATHSEVLQLI-HSQNIISLKVRSV 75
E ATH +V+ LI + + L V SV
Sbjct: 76 EGATHKQVVDLIRAGEKELILTVLSV 101
Score = 44.7 bits (106), Expect = 3e-06
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 127 GPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLEL 185
G + P V A AG++ GD+IL NGV T + V ++++ L L
Sbjct: 38 GELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVE-GATHKQVVDLIRAGEKELIL 96
Query: 186 LVHR 189
V
Sbjct: 97 TVLS 100
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding;
1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 81.3 bits (201), Expect = 3e-19
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 3 NGTLGFSIRGGREH-------TTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATH 55
N T GF I+ H FV+ V S A+ +GL GD I +NG +E H
Sbjct: 15 NQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRH 74
Query: 56 SEVLQLIH-SQNIISLKV 72
E++ +I S N++ L+
Sbjct: 75 REIVDIIKASGNVLRLET 92
Score = 42.4 bits (100), Expect = 2e-05
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 109 PITLEVPPHGKLG-------CGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNG 161
+TLE + G + + + FV ++ A+ AGL GD I + NG
Sbjct: 7 VLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNG 66
Query: 162 VKFSPDVTFEHAVSVMKSS-CLLELLVHRG 190
+ + V ++K+S +L L G
Sbjct: 67 LNVE-GIRHREIVDIIKASGNVLRLETLYG 95
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 117
Score = 81.4 bits (201), Expect = 5e-19
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
+ LG SI G + G++VS V S A ++GL GDQ++ NG + AT + +I
Sbjct: 29 SEPLGISIVSGEKG--GIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLII 86
Query: 63 -HSQNIISLKVRS 74
+ I++ +
Sbjct: 87 GQQCDTITILAQY 99
Score = 59.8 bits (145), Expect = 2e-11
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVT 169
+ ++ LG I G K GI+V +A AGL+ GDQ+L NG+ T
Sbjct: 23 VKVQKGSEP-LGISIVSGE--KGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLR-SAT 78
Query: 170 FEHAVSVMKSSC-LLELLVHRG-----VGLDLFPGGSSG 202
+ A ++ C + +L + G SSG
Sbjct: 79 EQQARLIIGQQCDTITILAQYNPHVHQLSSHSRSGPSSG 117
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 80.8 bits (200), Expect = 6e-19
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQL 61
GF I GG E + + V A+R G L GD+++ ++G P+ TH V+ L
Sbjct: 19 ESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDL 78
Query: 62 IHS---QNIISLKVR 73
+H ++L VR
Sbjct: 79 MHHAARNGQVNLTVR 93
Score = 42.7 bits (101), Expect = 2e-05
Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 10/107 (9%)
Query: 100 NQNERFPVVPITLEVPPHGKLGCGICKGPQWKPGIFVQF-TKDACVAKDAGLKCGDQILA 158
+ + + + + L G G I G + I + +D L GD+++
Sbjct: 3 SGSSGYKELDVHLRRMESG-FGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVY 61
Query: 159 CNGVKFSPDVTFEHAVSVMKSSCL---LELLVHRGVGLDLFPGGSSG 202
+G+ + T + + +M + + L V R + G SSG
Sbjct: 62 VDGIPVA-GKTHRYVIDLMHHAARNGQVNLTVRR----KVLSGPSSG 103
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 80.4 bits (199), Expect = 6e-19
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI-HS 64
GF + G + G ++ VEP S AE++GLL GD+++ +NG +E TH +V+ I +
Sbjct: 16 YGFHLHGEKGKL-GQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA 74
Query: 65 QNIISLKVRS 74
N + L V
Sbjct: 75 LNAVRLLVVD 84
Score = 44.2 bits (105), Expect = 4e-06
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 126 KGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLE 184
G + K G +++ + A+ AGL GD+++ NG T + VS ++++ +
Sbjct: 21 HGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVE-KETHQQVVSRIRAALNAVR 79
Query: 185 LLVHR 189
LLV
Sbjct: 80 LLVVD 84
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 80.9 bits (200), Expect = 7e-19
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 3 NGTLGFSIRGGREHT------TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHS 56
G LG SI GG+ T G+F+S V + A R+G+ +GD+++ +NG ++ A H
Sbjct: 25 TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHH 84
Query: 57 EVLQLI-HSQNIISLKVR 73
E ++ + + + ++V
Sbjct: 85 EAVEALRGAGTAVQMRVW 102
Score = 44.3 bits (105), Expect = 4e-06
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 110 ITLEVPPHGKLGCGICKG------PQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVK 163
+T+ G LG I G GIF+ + A AG++ GD++L NGV
Sbjct: 19 LTILRQTGG-LGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVA 77
Query: 164 FSPDVTFEHAVSVMKSSC-LLELLVHRGVG 192
AV ++ + +++ V R G
Sbjct: 78 LQ-GAEHHEAVEALRGAGTAVQMRVWRESG 106
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 80.6 bits (199), Expect = 8e-19
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 3 NGTLGFSIRGGREH-------TTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATH 55
N T GF I+ R + ++ S A +GL GD + ING E T+
Sbjct: 26 NETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTY 85
Query: 56 SEVLQLIH-SQNIISLKV 72
+V+ LI S N+++++
Sbjct: 86 KQVVDLIRSSGNLLTIET 103
Score = 35.9 bits (83), Expect = 0.003
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 127 GPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSC-LLEL 185
+ + ++ A AGL+ GD + NGV T++ V +++SS LL +
Sbjct: 43 ACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTE-GFTYKQVVDLIRSSGNLLTI 101
Query: 186 LV 187
Sbjct: 102 ET 103
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 80.0 bits (198), Expect = 8e-19
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
GF I GG E +++ ++ P A+ G L GD++I ++G P+ +H V+QL
Sbjct: 12 ETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQL 71
Query: 62 IHS---QNIISLKVR 73
+ Q ++L VR
Sbjct: 72 MQQAAKQGHVNLTVR 86
Score = 45.3 bits (108), Expect = 1e-06
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFSPDV 168
I L G G I G + I++ D L+ GD++++ +G
Sbjct: 6 IFLWRKETG-FGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVI-GK 63
Query: 169 TFEHAVSVMKSS---CLLELLVHR 189
+ + V +M+ + + L V +
Sbjct: 64 SHQLVVQLMQQAAKQGHVNLTVRQ 87
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 78.9 bits (195), Expect = 2e-18
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLI 62
GF+++GG EH + VS +E +A S + GD+++ ING P+ + E L LI
Sbjct: 21 APWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQEALILI 79
Query: 63 -HSQNIISLKVR 73
S I+ L VR
Sbjct: 80 KGSFRILKLIVR 91
Score = 38.5 bits (90), Expect = 4e-04
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 97 SNLNQNERFPVVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVA-KDAGLKCGDQ 155
S+ + F VP+ L+ G + G + + V +D A ++ GD+
Sbjct: 2 SSGSSGGSFQYVPVQLQGG--APWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDE 59
Query: 156 ILACNGVKFSPDVTFEHAVSVMKSSC-LLELLVHRG 190
++ NG + + A+ ++K S +L+L+V R
Sbjct: 60 LVNINGT--PLYGSRQEALILIKGSFRILKLIVRRR 93
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 78.9 bits (194), Expect = 2e-18
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 3 NGTLGFSIRGGREH-TTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQL 61
T GFS+ E ++V++V+ A + GL GD+I+ IN + S +
Sbjct: 19 ADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDF 78
Query: 62 IHSQNIISLKVRS 74
+ SQ + L VR+
Sbjct: 79 L-SQPSLGLLVRT 90
Score = 41.9 bits (98), Expect = 2e-05
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 131 KPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCL 182
++V K+ +A GLK GD+IL N + + L
Sbjct: 34 IRRLYVNSVKETGLASKKGLKAGDEILEINNRAAD-ALNSSMLKDFLSQPSL 84
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI,
signaling protein; 1.80A {Mus musculus}
Length = 106
Score = 78.6 bits (194), Expect = 3e-18
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
GF +R + T G + +E S AE++GLL GD+++RING ++ H++V++L+
Sbjct: 12 GQNYGFFLRIEK-DTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELV 70
Query: 63 H-SQNIISLKVRSVGMI 78
S N ++L V
Sbjct: 71 RKSGNSVTLLVLDGDSY 87
Score = 37.8 bits (88), Expect = 8e-04
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 127 GPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLEL 185
+ G ++ ++ A+ AGL GD++L NGV V +++ S + L
Sbjct: 21 IEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVD-KEEHAQVVELVRKSGNSVTL 79
Query: 186 LVHRG 190
LV G
Sbjct: 80 LVLDG 84
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 78.5 bits (194), Expect = 4e-18
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI-HS 64
GF++ + G F+ +V+P S AE SGL D+I+ +NG +E H +V+ I
Sbjct: 22 YGFNLHSDKSKP-GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG 80
Query: 65 QNIISLKVRSV 75
+ L V
Sbjct: 81 GDETKLLVVDR 91
Score = 41.9 bits (99), Expect = 2e-05
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 126 KGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLE 184
+ KPG F++ A+ +GL+ D+I+ NGV VS +++ +
Sbjct: 27 HSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCME-GKQHGDVVSAIRAGGDETK 85
Query: 185 LLV 187
LLV
Sbjct: 86 LLV 88
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 78.1 bits (193), Expect = 4e-18
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQ 65
GF++ + G ++ +V+P S A RSGL D++I +NG +E H+EV+ I ++
Sbjct: 17 YGFNLHSDKSRP-GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR 75
Query: 66 -NIISLKVRSV 75
+ L V
Sbjct: 76 EDEARLLVVGP 86
Score = 45.4 bits (108), Expect = 1e-06
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVT 169
L P G G + + +PG +++ A +GL+ D+++ NG +
Sbjct: 8 CHLRKGPQG-YGFNL-HSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVE-GLR 64
Query: 170 FEHAVSVMKSS-CLLELLV 187
V+ +K+ LLV
Sbjct: 65 HAEVVASIKAREDEARLLV 83
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 78.0 bits (193), Expect = 4e-18
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 3 NGTLGFSIRGGR----EHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSE 57
T GF IRGG + V +++V P A+R G + GD+++ ++G + TH+E
Sbjct: 13 GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAE 72
Query: 58 VLQLI-HSQNIISLKVR 73
+ ++ +L +
Sbjct: 73 AMSILKQCGQEAALLIE 89
Score = 46.4 bits (111), Expect = 6e-07
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 107 VVPITLEVPPHGKLGC----GICKGPQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNG 161
V +TL + G G + + ++ +K GD++L+ +G
Sbjct: 4 TVEVTLHKEGNT-FGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDG 62
Query: 162 VKFSPDVTFEHAVSVMKSSC-LLELLVHRGV 191
++ T A+S++K LL+ V
Sbjct: 63 IRLL-GTTHAEAMSILKQCGQEAALLIEYDV 92
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70
kDa, Na/PI cotransporter C- terminal-associated
protein, NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 78.7 bits (194), Expect = 4e-18
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
GF +R + T G + +E S AE++GLL GD+++RING ++ H++V++L+
Sbjct: 24 GQNYGFFLRIEK-DTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELV 82
Query: 63 H-SQNIISLKVRSVGMI 78
S N ++L V
Sbjct: 83 RKSGNSVTLLVLDGDSY 99
Score = 37.8 bits (88), Expect = 0.001
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVT 169
L G + + + G ++ ++ A+ AGL GD++L NGV
Sbjct: 17 CKLSKQEGQNYGFFL-RIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVD-KEE 74
Query: 170 FEHAVSVMKSS-CLLELLVHRG 190
V +++ S + LLV G
Sbjct: 75 HAQVVELVRKSGNSVTLLVLDG 96
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 77.8 bits (192), Expect = 4e-18
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
GFS+ G GV+V N+ P + GL D+++++N D V+ LI
Sbjct: 18 MEDFGFSVADGLLEK-GVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLI 76
Query: 63 -HSQNIISLKVR 73
S N + L +
Sbjct: 77 AESGNKLDLVIS 88
Score = 48.1 bits (115), Expect = 1e-07
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 110 ITLEVPPHGK-LGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDV 168
+TL + G + G + G++V+ + A GLK D++L N V+ D
Sbjct: 10 VTLYKDSGMEDFGFSVADGLL-EKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTR-DF 67
Query: 169 TFEHAVSVMKSSC-LLELLVHRG 190
V ++ S L+L++ R
Sbjct: 68 DCCLVVPLIAESGNKLDLVISRN 90
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 78.1 bits (193), Expect = 4e-18
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
+ LGF+I GG E G+F+S + A+ SG L GDQI+ +NG + +A+H +
Sbjct: 21 STGLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIA 79
Query: 62 I-HSQNIISLKVR 73
+ ++ +++ +
Sbjct: 80 LKNAGQTVTIIAQ 92
Score = 46.5 bits (111), Expect = 6e-07
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFSPDV 168
I + G LG I G + GIF+ F L+ GDQIL+ NGV +
Sbjct: 15 IVIHRGSTG-LGFNI-VGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR-NA 71
Query: 169 TFEHAVSVMKSSC-LLELLVHR 189
+ E A +K++ + ++
Sbjct: 72 SHEQAAIALKNAGQTVTIIAQY 93
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 78.2 bits (193), Expect = 5e-18
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
+ GF +R G E G + ++EP S AE +GL D ++ +NG +E H V+++I
Sbjct: 16 SNGYGFYLRAGPEQK-GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMI 74
Query: 63 -HSQNIISLKVRSV 75
+ +L V
Sbjct: 75 RKGGDQTTLLVLDK 88
Score = 39.7 bits (93), Expect = 1e-04
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 126 KGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSC-LLE 184
+ + G ++ + A+ AGLK D ++A NG + + V +++
Sbjct: 24 RAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVE-ALDHDGVVEMIRKGGDQTT 82
Query: 185 LLVHRGVGLDLF--PGGSSG 202
LLV ++ G SSG
Sbjct: 83 LLVLDKEAESIYSLSGPSSG 102
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 77.6 bits (192), Expect = 5e-18
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
GF++ G +S V S A+ GL GDQI+ +N ++ A+H +V++LI
Sbjct: 12 RAGYGFTLSGQA----PCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLI 67
Query: 63 H-SQNIISLKVRS 74
++ + +
Sbjct: 68 GKCSGVLHMVIAE 80
Score = 44.1 bits (105), Expect = 3e-06
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 133 GIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLELLVHRGV 191
+ A GL+ GDQILA N + + E V ++ +L +++ GV
Sbjct: 24 PCVLSCVMRGSPADFVGLRAGDQILAVNEINVK-KASHEDVVKLIGKCSGVLHMVIAEGV 82
Query: 192 G 192
G
Sbjct: 83 G 83
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 77.7 bits (192), Expect = 5e-18
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
+ GF +R G E G + ++EP S AE +GL D ++ +NG +E H V+++I
Sbjct: 15 SNGYGFYLRAGPEQK-GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMI 73
Query: 63 -HSQNIISLKVRS 74
+ +L V
Sbjct: 74 RKGGDQTTLLVLD 86
Score = 39.6 bits (93), Expect = 1e-04
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 126 KGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLE 184
+ + G ++ + A+ AGLK D ++A NG + + V +++
Sbjct: 23 RAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVE-ALDHDGVVEMIRKGGDQTT 81
Query: 185 LLV 187
LLV
Sbjct: 82 LLV 84
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 77.8 bits (192), Expect = 5e-18
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 6 LGFSIRGGREHT--TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI- 62
GF +R + G F+ V+P A+++G+ GD+++ + G +E H E + I
Sbjct: 16 FGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQ 75
Query: 63 HSQNIISLKVRSVGMIPTKERDKSVT 88
+ +SL V E D+ +
Sbjct: 76 GQGSCVSLTVVD------PEADRETS 95
Score = 43.1 bits (102), Expect = 1e-05
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 126 KGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLE 184
KG +PG F+ AK AG++ GD+++A G + E VS ++ +
Sbjct: 24 KGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVE-GLGHEETVSRIQGQGSCVS 82
Query: 185 LLV 187
L V
Sbjct: 83 LTV 85
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 79.3 bits (195), Expect = 5e-18
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 3 NGTLGFSIRGGREHT------------TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
N LGFSI GG + G++V+ V AE +GL IGD+I+++NG+ +
Sbjct: 37 NLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 96
Query: 51 EDATHSEVLQLI--HSQNIISLKVRSVGMIPTKERDK-SVTW 89
TH + + + S+ ++ L V + ++ S T
Sbjct: 97 TMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSMLSETE 138
Score = 47.7 bits (113), Expect = 6e-07
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 126 KGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSC--LL 183
+ GI+V + A+ AGL+ GD+I+ NG + VT + A + ++
Sbjct: 58 SEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMT-MVTHDQARKRLTKRSEEVV 116
Query: 184 ELLVHR 189
LLV R
Sbjct: 117 RLLVTR 122
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 78.7 bits (194), Expect = 6e-18
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
++G + GG + G+FV+ V S A + GL GDQI+R+N + E + +
Sbjct: 38 GDSVGLRLAGGNDV--GIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFL 95
Query: 63 HSQ---NIISLKVRS 74
+++ +
Sbjct: 96 LDLPKGEEVTILAQK 110
Score = 59.8 bits (145), Expect = 3e-11
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 109 PITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDV 168
++ +G + G GIFV + A GL+ GDQIL N V F+ ++
Sbjct: 30 MKLVKFRKGDSVGLRLAGGN--DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFT-NI 86
Query: 169 TFEHAVSVMKSSC---LLELLVHRG 190
E AV + + +L +
Sbjct: 87 IREEAVLFLLDLPKGEEVTILAQKK 111
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 77.8 bits (192), Expect = 7e-18
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
G+ GFS++ + GV+++++ P+ A R+G+L D +I +NG +EDA+H EV++ +
Sbjct: 18 GGSYGFSLKTVQGKK-GVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKV 76
Query: 63 -HSQNIISLKVRSVGMIPTKERDKS 86
S + + + KS
Sbjct: 77 KKSGSRVMFLLVDKETDKRHVEQKS 101
Score = 41.2 bits (97), Expect = 5e-05
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 118 GKLGCGIC-KGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSV 176
G K Q K G+++ VA AG+ D ++ NG D + E V
Sbjct: 17 EGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVE-DASHEEVVEK 75
Query: 177 MKSS 180
+K S
Sbjct: 76 VKKS 79
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 77.4 bits (191), Expect = 8e-18
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 3 NGTLGFSIRGGREH-------TTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATH 55
GFS+R R + T V +VE S A+ +GL GD I ING + H
Sbjct: 12 GKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVH 71
Query: 56 SEVLQLIH-SQNIISLKVRSV 75
+V++L+ S N ISL+ ++
Sbjct: 72 MDVVELLLKSGNKISLRTTAL 92
Score = 39.7 bits (93), Expect = 2e-04
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 127 GPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLEL 185
+ V +D A++AGL+ GD I NG + V ++ S + L
Sbjct: 29 SDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVL-GLVHMDVVELLLKSGNKISL 87
Query: 186 LV 187
Sbjct: 88 RT 89
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 77.4 bits (191), Expect = 8e-18
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 3 NGTLGFSIRGGREHT------TGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATH 55
+ G I G TG+F+ + P S A G L +GD+I+ +NG + ++T
Sbjct: 16 KKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTE 75
Query: 56 SEVLQLI-HSQNIISLKVRS 74
V+ LI + I L++++
Sbjct: 76 QAVIDLIKEADFKIELEIQT 95
Score = 47.3 bits (113), Expect = 4e-07
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 107 VVPITLEVPPHGKLGCGICKG------PQWKPGIFVQF-TKDACVAKDAGLKCGDQILAC 159
+ +TL+ G I +G GIF++ D+ LK GD+IL+
Sbjct: 6 IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSL 65
Query: 160 NGVKFSPDVTFEHAVSVMKSS 180
NG + T + + ++K +
Sbjct: 66 NGKDVR-NSTEQAVIDLIKEA 85
>2i04_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; PDZ, E6 binding, tumor
suppressor, peptide binding protein; 2.15A {Mus
musculus}
Length = 85
Score = 76.2 bits (188), Expect = 1e-17
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQL 61
+ GF++ GG E + + ++ A G + GD I+ +N + TH++V+++
Sbjct: 10 SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKI 69
Query: 62 IHS---QNIISLKVR 73
S + L++
Sbjct: 70 FQSIPIGASVDLELC 84
Score = 44.9 bits (107), Expect = 2e-06
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 108 VPITLEVPPHGKLGCGICKGPQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFSP 166
+ L G G + G + + ++ D A D ++ GD I++ N
Sbjct: 2 IHTKLRKSSRG-FGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVL- 59
Query: 167 DVTFEHAVSVMKSSCL---LELLVHR 189
T V + +S + ++L + R
Sbjct: 60 GHTHAQVVKIFQSIPIGASVDLELCR 85
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 77.7 bits (191), Expect = 1e-17
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 3 NGTLGFSIRGGREHT------------TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPI 50
+ GF +RG + T ++ +V+ A R+GL +GD +I +NG +
Sbjct: 38 SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNV 97
Query: 51 EDATHSEVLQLIH-SQNIISLKVRSVGMIP 79
H +V+ +I N + +KV V P
Sbjct: 98 VKVGHRQVVNMIRQGGNTLMVKVVMVTRHP 127
Score = 38.4 bits (89), Expect = 8e-04
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 127 GPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLEL 185
P + +++ + VA AGL+ GD ++ NG V V++++ L +
Sbjct: 60 TPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVV-KVGHRQVVNMIRQGGNTLMV 118
Query: 186 LVHRG 190
V
Sbjct: 119 KVVMV 123
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 78.7 bits (194), Expect = 2e-17
Identities = 30/180 (16%), Positives = 52/180 (28%), Gaps = 42/180 (23%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
+G +G ++ G+FV V+ S A GL GDQ+++ING + + +++
Sbjct: 15 DGKIGLRLKSIDN---GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVL 71
Query: 63 H--SQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVPPHGKL 120
I++ +R T K T +
Sbjct: 72 KQAFGEKITMTIRDRPFERTITMHKDSTG---------------------HVGFIFKNGK 110
Query: 121 GCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS 180
I K A GL I NG + ++ +S
Sbjct: 111 ITSIVKD---------------SSAARNGLLTEHNICEINGQNVI-GLKDSQIADILSTS 154
Score = 53.7 bits (129), Expect = 7e-09
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
G +GF + G+ +++ S A R+GLL I ING + S++ ++
Sbjct: 99 TGHVGFIFKNGKI-------TSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADIL 151
Query: 63 -HSQNIISLKV 72
S ++++ +
Sbjct: 152 STSGTVVTITI 162
Score = 49.4 bits (118), Expect = 3e-07
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVT 169
+ L GK+G + GIFVQ + A GL+ GDQ+L NG + +
Sbjct: 8 VILCKDQDGKIGLRLKSI---DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCA-GWS 63
Query: 170 FEHAVSVMKSSC--LLELLVHR 189
+ A V+K + + + +
Sbjct: 64 SDKAHKVLKQAFGEKITMTIRD 85
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 77.2 bits (190), Expect = 2e-17
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH 63
G LGF++RG V V ++P A +G GD I+ I + T SEV++L+
Sbjct: 34 GDLGFTLRGNA----PVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLK 89
Query: 64 S--QNIISLKVRSV 75
S ++ I +KV S+
Sbjct: 90 SFGEDEIEMKVVSL 103
Score = 37.5 bits (87), Expect = 0.001
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 133 GIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS 180
+ V F C A AG + GD I++ V +T + ++KS
Sbjct: 45 PVQVHFLDPYCSASVAGAREGDYIVSIQLVDCK-WLTLSEVMKLLKSF 91
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 113
Score = 77.0 bits (190), Expect = 2e-17
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
+ LGF+I GG E G+FVS + A+ SG L GD+I+ +NG + +ATH +
Sbjct: 25 STGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAA 83
Query: 62 I-HSQNIISLKVR 73
+ + +++ +
Sbjct: 84 LKRAGQSVTIVAQ 96
Score = 42.4 bits (100), Expect = 2e-05
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVA-KDAGLKCGDQILACNGVKFSPDV 168
I L G LG I G + GIFV F A L+ GD+IL+ NGV +
Sbjct: 19 IILHKGSTG-LGFNI-VGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLR-NA 75
Query: 169 TFEHAVSVMKSSC-LLELLVHRGVGLDLFPGGSSGYNSSTSS 209
T E A + +K + + ++ P S + SS S
Sbjct: 76 THEQAAAALKRAGQSVTIVAQYR------PEEYSRFESSGPS 111
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 76.7 bits (189), Expect = 2e-17
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 3 NGTLGFSIRGGR-------EHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDAT 54
N GF I T + + S A+R L +GD+I+ +NG I +
Sbjct: 21 NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMP 80
Query: 55 HSEVLQLI-HSQNIISLKVR 73
H+++++LI + ++L++
Sbjct: 81 HADIVKLIKDAGLSVTLRII 100
Score = 42.4 bits (100), Expect = 2e-05
Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 10/102 (9%)
Query: 110 ITLEVPPHGKLGCGI-------CKGPQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNG 161
+ + + G I G + + + A LK GD+ILA NG
Sbjct: 14 VVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNG 73
Query: 162 VKFSPDVTFEHAVSVMKSS-CLLELLVHRGVGLDLFPGGSSG 202
++ V ++K + + L + L+ G SSG
Sbjct: 74 QSII-NMPHADIVKLIKDAGLSVTLRIIPQEELNSPSGPSSG 114
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 76.7 bits (189), Expect = 2e-17
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 11/88 (12%)
Query: 3 NGTLGFSIRGGR---------EHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIED 52
N +LG SI GG+ E G+F+ V S A ++ L GD+I+ ++G +++
Sbjct: 26 NVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQN 85
Query: 53 ATHSEVLQLI-HSQNIISLKVRSVGMIP 79
A+HSE ++ I ++ N + V+S+ P
Sbjct: 86 ASHSEAVEAIKNAGNPVVFIVQSLSSTP 113
Score = 45.5 bits (108), Expect = 2e-06
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 97 SNLNQNERFPVVPITLEVPPHGKLGCGI---------CKGPQWKPGIFVQF-TKDACVAK 146
S N + P + + P+ LG I K + GIF++ +D+ K
Sbjct: 6 SGPNFSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGK 65
Query: 147 DAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS 180
LK GD+IL +GV + + AV +K++
Sbjct: 66 TNALKTGDKILEVSGVDLQ-NASHSEAVEAIKNA 98
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 76.2 bits (188), Expect = 2e-17
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 3 NGTLGFSIRGGR---------EHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIED 52
+ +LG SI GGR E G+F+ +V S A ++G L GD+I+ ++G + D
Sbjct: 15 SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRD 74
Query: 53 ATHSEVLQLI-HSQNIISLKVRSV 75
A+H + ++ I + N + V+S+
Sbjct: 75 ASHEQAVEAIRKAGNPVVFMVQSI 98
Score = 47.4 bits (113), Expect = 4e-07
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 110 ITLEVPPHGKLGCGICKG---------PQWKPGIFVQF-TKDACVAKDAGLKCGDQILAC 159
+ L P LG I G + GIF++ +D+ K+ LK GD+I+
Sbjct: 8 VELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEV 67
Query: 160 NGVKFSPDVTFEHAVSVMKSSC-LLELLVHRGV 191
+G+ D + E AV ++ + + +V +
Sbjct: 68 DGMDLR-DASHEQAVEAIRKAGNPVVFMVQSII 99
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex,
peptide binding protein; 1.54A {Rattus norvegicus}
SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 76.7 bits (189), Expect = 3e-17
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
+ LGF+I GG E G+F+S + A+ SG L GDQI+ +NG + +A+H +
Sbjct: 24 STGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIA 82
Query: 62 I-HSQNIISLKVR 73
+ ++ +++ +
Sbjct: 83 LKNAGQTVTIIAQ 95
Score = 46.7 bits (111), Expect = 8e-07
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFSPDV 168
I + G LG I G + GIF+ F L+ GDQIL+ NGV +
Sbjct: 18 IVIHRGSTG-LGFNI-VGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR-NA 74
Query: 169 TFEHAVSVMKSSC-LLELLVHRGVGLDLFPGGSSGYNSSTSS 209
+ E A +K++ + ++ +S +SS
Sbjct: 75 SHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDSSGRI 116
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 75.4 bits (186), Expect = 3e-17
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI-HS 64
GF + R G F+ V+ A+ +GL D II +NG + D + +V+ I S
Sbjct: 16 YGFHLNAIRGLP-GSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS 74
Query: 65 QNIISLKVRS 74
++L V
Sbjct: 75 GKNVTLLVCG 84
Score = 42.6 bits (101), Expect = 1e-05
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 126 KGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLE 184
+ PG F++ + A AGL+ D I+ NGV D +E V ++SS +
Sbjct: 21 NAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVL-DEPYEKVVDRIQSSGKNVT 79
Query: 185 LLV 187
LLV
Sbjct: 80 LLV 82
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 75.1 bits (185), Expect = 4e-17
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS- 64
GF+I V V V+ AER+GL D ++++N P+E E+ I S
Sbjct: 16 FGFTICCDS----PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC 71
Query: 65 QNIISLKVRSVGMIPTKERD 84
+ I L V + D
Sbjct: 72 PSEIILLVWRMVPQVKPGPD 91
Score = 38.1 bits (89), Expect = 4e-04
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 133 GIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLELLVHRGV 191
+ VQ A+ AGL+ D +L N ++S + LLV R V
Sbjct: 25 PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVE-HWKCVELAHEIRSCPSEIILLVWRMV 83
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1,
HOST-virus interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 75.4 bits (186), Expect = 4e-17
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 3 NGTLGFSIRGGREHTT----GVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE 57
LG +I G G+FV ++ S E G + IGDQII ++G ++ T+ +
Sbjct: 14 VQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQ 73
Query: 58 VLQLI-HSQNIISLKVRSVGMIPTKERDKSV 87
++++ H+ + L + + + SV
Sbjct: 74 AVEVLRHTGQTVLLTLM-------RRGETSV 97
Score = 41.9 bits (99), Expect = 2e-05
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 123 GICKGPQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSC 181
I GIFV+ TK + V D ++ GDQI+A +G T + AV V++ +
Sbjct: 24 YIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQ-GFTNQQAVEVLRHTG 82
Query: 182 -LLELLVHR 189
+ L + R
Sbjct: 83 QTVLLTLMR 91
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 75.4 bits (186), Expect = 5e-17
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 3 NGTLGFSIRGGREHT--TGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVL 59
G ++ GGR+ T + V + A+R G L +GD ++ ING + TH++ +
Sbjct: 21 YAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAV 80
Query: 60 QLI-HSQNIISLKVR 73
+ I + L +R
Sbjct: 81 ERIRAGGPQLHLVIR 95
Score = 38.4 bits (90), Expect = 6e-04
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 11/97 (11%)
Query: 110 ITLEVPPHGKLGCGIC--KGPQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFSP 166
+ L G G + + + V+ KD + L+ GD +L NG
Sbjct: 15 VELVRGYAG-FGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQ- 72
Query: 167 DVTFEHAVSVMKSS-CLLELLVHRGVGLDLFPGGSSG 202
+T AV +++ L L++ R + G SSG
Sbjct: 73 GLTHAQAVERIRAGGPQLHLVIRRPL-----SGPSSG 104
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 75.1 bits (185), Expect = 5e-17
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 3 NGTLGFSIRGGREH-----TTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHS 56
LGF+I GG + +G++VS ++ A G L GD+I+ +NG +++ H
Sbjct: 17 PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQ 76
Query: 57 EVLQLI-HSQNIISLKVR 73
+ + L ++ +SL+V+
Sbjct: 77 DAVDLFRNAGYAVSLRVQ 94
Score = 42.7 bits (101), Expect = 1e-05
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 110 ITLEVPPHGKLGCGICKG-----PQWKPGIFV-QFTKDACVAKDAGLKCGDQILACNGVK 163
I L P G LG I G GI+V + ++ A D L+ GD+IL+ NG
Sbjct: 11 INLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQD 69
Query: 164 FSPDVTFEHAVSVMKSSC-LLELLVHR 189
++ + AV + +++ + L V
Sbjct: 70 LK-NLLHQDAVDLFRNAGYAVSLRVQH 95
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 76.0 bits (187), Expect = 6e-17
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 3 NGTLGFSIRGGREH---------TTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIED 52
LGF IR G G+F+S + P A+ +GLL + D+++ +NG +
Sbjct: 41 EKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSG 100
Query: 53 ATHSEVLQLI-HSQNIISLKVRSV 75
+ +V ++ + + + VR
Sbjct: 101 KSLDQVTDMMIANSRNLIITVRPA 124
Score = 37.5 bits (87), Expect = 0.002
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 118 GKLGCGICKGPQWKPGIFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSV 176
G G + PGIF+ + L D++L NG++ S + + +
Sbjct: 51 GSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVS-GKSLDQVTDM 109
Query: 177 MKSSC 181
M ++
Sbjct: 110 MIANS 114
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 75.5 bits (185), Expect = 6e-17
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 3 NGTLGFSIRGGRE-HTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQL 61
T GFS+ E ++V++V+ A + GL GD+I+ IN + S +
Sbjct: 28 ADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDF 87
Query: 62 IHSQNIISLKVRSVG 76
+ SQ + L VR+
Sbjct: 88 L-SQPSLGLLVRTYP 101
Score = 43.9 bits (103), Expect = 7e-06
Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 6/106 (5%)
Query: 101 QNERFP--VVPITLEVPPHGKLGCGICKGPQWKPG---IFVQFTKDACVAKDAGLKCGDQ 155
+ E P I +E G + G ++V K+ +A GLK GD+
Sbjct: 8 EIEICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDE 67
Query: 156 ILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLFPGGSS 201
IL N + + L L+ + G S
Sbjct: 68 ILEINNRAAD-ALNSSMLKDFLSQPSLGLLVRTYPELEEGVESGPS 112
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 75.2 bits (185), Expect = 8e-17
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 3 NGTLGFSIRGGREHT-----TGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHS 56
LG I GG+E G +++ + P AE++G L G Q++ NG P+ T+
Sbjct: 29 GNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYE 88
Query: 57 EVLQLI-HSQNIISLKVR 73
EV +I + VR
Sbjct: 89 EVQSIISQQSGEAEICVR 106
Score = 48.6 bits (116), Expect = 2e-07
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 131 KPGIFVQFTKDACVA-KDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSC-LLELLVH 188
+ G ++ A + L G Q+L NG+ + T+E S++ E+ V
Sbjct: 48 EIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLT-SKTYEEVQSIISQQSGEAEICVR 106
Query: 189 RGVGLDLFPGGSSG 202
+ + G SSG
Sbjct: 107 LDLNM---SGPSSG 117
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 81.9 bits (201), Expect = 9e-17
Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 28/186 (15%)
Query: 3 NGTLGFSIRGGREH-----TTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHS 56
N LGFSI GG ++ +F++ + P A + G L + D I+ +N + + THS
Sbjct: 69 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS 128
Query: 57 EVLQLIH-SQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVP 115
++ + + +I+ L V R K K ++ + F +
Sbjct: 129 AAVEALKEAGSIVRLYVM---------RRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQH 179
Query: 116 PHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVS 175
G + K + KD L+ GD+ILA N V DV E AV+
Sbjct: 180 IPGDNSIYVTK-----------IIEGGAAHKDGRLQIGDKILAVNSV-GLEDVMHEDAVA 227
Query: 176 VMKSSC 181
+K++
Sbjct: 228 ALKNTY 233
Score = 65.3 bits (158), Expect = 2e-11
Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 17/158 (10%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQLI-H 63
LGF+I GG + G+F+S + A+ SG L GDQI+ +NG + +A+H + + +
Sbjct: 320 LGFNIVGGEDGE-GIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN 378
Query: 64 SQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVPPHGKLGCG 123
+ +++ + E K D + +N + + +
Sbjct: 379 AGQTVTIIAQ-----YKPEEYSRFEAKIHDLREQLMNSSLGSGTASLRSNPKRGFYIRAL 433
Query: 124 ICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNG 161
G +++ + GD + +
Sbjct: 434 FDYDKTKDCGF---------LSQALSFRFGDVLHVIDA 462
Score = 63.4 bits (153), Expect = 6e-11
Identities = 44/228 (19%), Positives = 73/228 (32%), Gaps = 43/228 (18%)
Query: 3 NGTLGFSIRGGR-----EHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHS 56
LGFSI GG ++V+ + A + G L IGD+I+ +N +ED H
Sbjct: 164 PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHE 223
Query: 57 EVLQLI--------------------------------HSQNIISLKVRSVGMIPTKERD 84
+ + + + S
Sbjct: 224 DAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAM 283
Query: 85 KSVTWKFVDTNKSNLNQNERFPVVPITLEVPPHGK-LGCGICKGPQWKPGIFVQF-TKDA 142
+ + +L E P P + + LG I G GIF+ F
Sbjct: 284 TPTSPRRYSPVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGED-GEGIFISFILAGG 342
Query: 143 CVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSC-LLELLVHR 189
L+ GDQIL+ NGV + + E A +K++ + ++
Sbjct: 343 PADLSGELRKGDQILSVNGVDLR-NASHEQAAIALKNAGQTVTIIAQY 389
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 74.8 bits (184), Expect = 1e-16
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 13/90 (14%)
Query: 3 NGTLGFSIRGGR---------EHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIED 52
+ +LG SI GGR E G+F+ +V S A ++G L GD+I+ ++G + D
Sbjct: 35 SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRD 94
Query: 53 ATHSEVLQLI-HSQNIISLKVRSVGMIPTK 81
A+H + ++ I + N + V+S +I T+
Sbjct: 95 ASHEQAVEAIRKAGNPVVFMVQS--IISTR 122
Score = 48.2 bits (115), Expect = 3e-07
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 13/111 (11%)
Query: 92 VDTNKSNLNQNERFPVVPITLEVPPHGKLGCGI---------CKGPQWKPGIFVQF-TKD 141
VD NL + L P LG I + GIF++ +D
Sbjct: 11 VDLGTENLYFQSM-QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLED 69
Query: 142 ACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSC-LLELLVHRGV 191
+ K+ LK GD+I+ +G+ D + E AV ++ + + +V +
Sbjct: 70 SPAGKNGTLKPGDRIVEVDGMDLR-DASHEQAVEAIRKAGNPVVFMVQSII 119
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 74.4 bits (183), Expect = 1e-16
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 3 NGTLGFSIRGGREH-TTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQ 60
LG S+ + + + ++P S +RSG L GD I+ I+G +E + E +
Sbjct: 26 GSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATK 85
Query: 61 LI-HSQNIISLKVR 73
L+ + L++
Sbjct: 86 LLASISEKVRLEIL 99
Score = 39.0 bits (91), Expect = 4e-04
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 4/83 (4%)
Query: 110 ITLEVPPHGKLGCGICKGPQW-KPGIFVQFTKDACVA-KDAGLKCGDQILACNGVKFSPD 167
+ + P LG + K I + K A V + L GD IL+ +G
Sbjct: 19 VEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSME-H 77
Query: 168 VTFEHAVSVMKSSC-LLELLVHR 189
+ A ++ S + L +
Sbjct: 78 CSLLEATKLLASISEKVRLEILP 100
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 74.0 bits (182), Expect = 1e-16
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS- 64
GF+I + V V V+ AER+GL D ++++N P+E E+ I S
Sbjct: 28 FGFTICCD----SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC 83
Query: 65 QNIISLKV 72
+ I L V
Sbjct: 84 PSEIILLV 91
Score = 38.6 bits (90), Expect = 5e-04
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 133 GIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLELLVHRGV 191
+ VQ A+ AGL+ D +L N ++S + LLV R
Sbjct: 37 PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVE-HWKCVELAHEIRSCPSEIILLVWRVS 95
Query: 192 G 192
G
Sbjct: 96 G 96
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 73.4 bits (181), Expect = 1e-16
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLI-H 63
LG SI G R + TGVFVS++ A+ G L+ GDQI+ +NG + +AT V L+
Sbjct: 18 LGLSIVGKR-NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKC 76
Query: 64 SQNIISLKVR 73
S ++L+V
Sbjct: 77 SLGTVTLEVG 86
Score = 50.7 bits (122), Expect = 2e-08
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFS 165
+ I L+ P LG I G+FV K D L GDQIL NG
Sbjct: 5 TLTIGLQKKPGKGLGLSIVGKRN-DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVR 63
Query: 166 PDVTFEHAVSVMKSSC-LLELLVHR 189
+ T E +++K S + L V R
Sbjct: 64 -NATQEAVAALLKCSLGTVTLEVGR 87
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 74.3 bits (183), Expect = 2e-16
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 3 NGTLGFSIRGGREHTT---GVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEV 58
+LG SI GG +F++ + P A ++ L +GD+I+ I G E TH++
Sbjct: 35 TDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQA 94
Query: 59 LQLI-HSQNIISLKVRSVGMIP 79
+ L+ ++ I ++V + G +
Sbjct: 95 VNLLKNASGSIEMQVVAGGDVS 116
Score = 50.4 bits (121), Expect = 4e-08
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 107 VVPITLEVPPHGKLGCGICKG---PQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGV 162
+ + ++ P LG I G P IF+ A+ L+ GD+I+ G
Sbjct: 25 LRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGT 84
Query: 163 KFSPDVTFEHAVSVMKSS-CLLELLVHRG 190
+T AV+++K++ +E+ V G
Sbjct: 85 STE-GMTHTQAVNLLKNASGSIEMQVVAG 112
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 105
Score = 73.5 bits (181), Expect = 2e-16
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 3 NGTLGFSIRGGR------EHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATH 55
LGFSI GG+ G+FVS + A R+G L +GD+++ ING + +A H
Sbjct: 17 ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARH 76
Query: 56 SEVLQLI-HSQNIISLKVR 73
+ L+ + I+L +
Sbjct: 77 DHAVSLLTAASPTIALLLE 95
Score = 42.3 bits (100), Expect = 2e-05
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 14/101 (13%)
Query: 110 ITLEVPPHGKLGCGICKG------PQWKPGIFV-QFTKDACVAKDAGLKCGDQILACNGV 162
L G LG I G GIFV + + + L+ GD++L+ NGV
Sbjct: 11 ACLARSERG-LGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGV 69
Query: 163 KFSPDVTFEHAVSVMKSS-CLLELLVHRGVGLDLFPGGSSG 202
+ + +HAVS++ ++ + LL+ R G G SSG
Sbjct: 70 DVT-EARHDHAVSLLTAASPTIALLLEREAG----SGPSSG 105
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 73.6 bits (181), Expect = 2e-16
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 3 NGTLGFSIRGGREHT--------TGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDA 53
+G+LGF+I GGR G+FVS + A + G L I D+II +NG + A
Sbjct: 18 SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRA 77
Query: 54 THSEVLQLI-HSQNIISLKVR 73
TH + ++ ++ I ++V
Sbjct: 78 THDQAVEAFKTAKEPIVVQVL 98
Score = 42.4 bits (100), Expect = 2e-05
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 107 VVPITLEVPPHGKLGCGICKG--------PQWKPGIFV-QFTKDACVAKDAGLKCGDQIL 157
+ + L LG I G GIFV + AK+ GL+ D+I+
Sbjct: 9 SLTLVLHRDSGS-LGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRII 67
Query: 158 ACNGVKFSPDVTFEHAVSVMKSSC-LLELLVHRGVGLDLFPGGSSG 202
NG S T + AV K++ + + V R G SSG
Sbjct: 68 EVNGRDLS-RATHDQAVEAFKTAKEPIVVQVLRRT-----SGPSSG 107
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal
transduction, structural genom structural genomics
consortium, SGC, signaling protein; 1.85A {Homo
sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A
1iu0_A 1iu2_A
Length = 102
Score = 73.5 bits (181), Expect = 2e-16
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 3 NGTLGFSIRGGREHT-----TGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHS 56
N LGFSI GG ++ G+F++ + P A G L + D ++R+N + + HS
Sbjct: 14 NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHS 73
Query: 57 EVLQLI-HSQNIISLKVR 73
++ + + ++ L VR
Sbjct: 74 RAVEALKEAGPVVRLVVR 91
Score = 44.2 bits (105), Expect = 4e-06
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 105 FPVVPITLEVPPHGKLGCGICKG-----PQWKPGIFV-QFTKDACVAKDAGLKCGDQILA 158
F I LE G LG I G PGIF+ + A D L D +L
Sbjct: 3 FKYEEIVLERGNSG-LGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLR 61
Query: 159 CNGVKFSPDVTFEHAVSVMKSSC-LLELLVHR 189
N V S +V AV +K + ++ L+V R
Sbjct: 62 VNEVDVS-EVVHSRAVEALKEAGPVVRLVVRR 92
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 73.1 bits (180), Expect = 2e-16
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 3 NGTLGFSIRGGREH-TTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQ 60
LG SI GG + + + V + A + G L GDQI+ +NG + ATH E +
Sbjct: 14 RTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAIN 73
Query: 61 LI-HSQNIISLKVR 73
++ + + L +
Sbjct: 74 VLRQTPQRVRLTLY 87
Score = 44.6 bits (106), Expect = 3e-06
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 110 ITLEVPPHGKLGCGICKGP-QWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFSPD 167
I + G LG I G I + ++ KD L GDQIL NG+
Sbjct: 8 IEISKGRTG-LGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLR-K 65
Query: 168 VTFEHAVSVMKSSC-LLELLVHRGVG 192
T + A++V++ + + L ++R
Sbjct: 66 ATHDEAINVLRQTPQRVRLTLYRDEA 91
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 74.1 bits (182), Expect = 2e-16
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 3 NGTLGFSIRGGR----EHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSE 57
G ++G ++ +S +E S AER G+L IGD+++ ING P ED+T E
Sbjct: 26 VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEE 85
Query: 58 VLQLIH-SQNIISLKVR 73
QL+ S + +
Sbjct: 86 ANQLLRDSSITSKVTLE 102
Score = 41.8 bits (98), Expect = 5e-05
Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 9/114 (7%)
Query: 97 SNLNQNERFPVVPITLEVPPHGKLG----CGICKGPQWKPGIFVQF-TKDACVAKDAGLK 151
S Q + L P G + + + D+ + L+
Sbjct: 6 SGAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQ 65
Query: 152 CGDQILACNGVKFSPDVTFEHAVSVMKSS---CLLELLVHRGVGLDLFPGGSSG 202
GD+++A NG+ D TFE A +++ S + L + V + P SG
Sbjct: 66 IGDRVMAINGIPTE-DSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGSG 118
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1;
copper chaperone for superoxide dismutase, neuronal
adaptor, protein transport; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 90
Score = 72.9 bits (179), Expect = 2e-16
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
LGFS++ G + ++ AER G+ +G +II ING + H +++ ++
Sbjct: 23 RYQLGFSVQNG-------IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHIL 75
Query: 63 H-SQNIISLKV 72
+ I +K
Sbjct: 76 SNAVGEIHMKT 86
Score = 32.8 bits (75), Expect = 0.031
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 98 NLNQNERFPVVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQIL 157
+ + E V L P + G + GI + +A+ G++ G +I+
Sbjct: 2 HHHHLETMGNVTTVLIRRPDLRYQLGFS----VQNGIICSLMRGG-IAERGGVRVGHRII 56
Query: 158 ACNGVKFSPDVTFEHAVSVMKSS 180
NG E V ++ ++
Sbjct: 57 EINGQSVV-ATPHEKIVHILSNA 78
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 73.1 bits (180), Expect = 2e-16
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLI-H 63
LG + + GVF+ ++ A + G L D+++ ING ++ T Q+I
Sbjct: 18 LGIKLVRRTD-EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQA 76
Query: 64 SQNIISLKVR 73
S ++L +
Sbjct: 77 SGERVNLTIA 86
Score = 50.8 bits (122), Expect = 2e-08
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 107 VVPITLEVPPHGK-LGCGICKGPQWKPGIFVQFTKDACVA-KDAGLKCGDQILACNGVKF 164
++ + L G+ LG + + +PG+F+ + +A +D L D++LA NG
Sbjct: 4 ILQVALHKRDSGEQLGIKLVRRTD-EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDL 62
Query: 165 SPDVTFEHAVSVMKSSC-LLELLVHRG 190
T E A ++++S + L + R
Sbjct: 63 K-YGTPELAAQIIQASGERVNLTIARP 88
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 72.3 bits (178), Expect = 3e-16
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
G +GF + G+ ++++ S A R+GLL I ING + S++ ++
Sbjct: 15 TGHVGFIFKNGK-------ITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADIL 67
Query: 63 -HSQNIISLKV 72
S ++++ +
Sbjct: 68 STSGTVVTITI 78
Score = 34.2 bits (79), Expect = 0.009
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 8/71 (11%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVT 169
IT+ G +G K G KD+ A GL I NG +
Sbjct: 8 ITMHKDSTGHVGFIF------KNGKITSIVKDS-SAARNGLLTEHNICEINGQNVI-GLK 59
Query: 170 FEHAVSVMKSS 180
++ +S
Sbjct: 60 DSQIADILSTS 70
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 73.3 bits (180), Expect = 3e-16
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
G LGF++RG T V V ++P A +G GD I+ I G + T SEV++L+
Sbjct: 25 EGDLGFTLRGN----TPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLL 80
Query: 63 HS--QNIISLKVRSVGMIPTKERDKSVT 88
S + +KV S+ + +KS
Sbjct: 81 KSFGGEEVEMKVVSLLDSTSSMHNKSGP 108
Score = 36.3 bits (84), Expect = 0.003
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 133 GIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSC--LLELLVHRG 190
+ V F C A AG K GD I++ GV +T + ++KS +E+ V
Sbjct: 37 PVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCK-WLTVSEVMKLLKSFGGEEVEMKV--- 92
Query: 191 VGLDLFPGGSSGYNSSTSS 209
+ L SS +N S S
Sbjct: 93 --VSLLDSTSSMHNKSGPS 109
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 73.6 bits (181), Expect = 3e-16
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 3 NGTLGFSIRGGREHT---TGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEV 58
+LG ++ GG H ++V +VEP R G + GD ++ ++G + + + SE
Sbjct: 35 GESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEA 94
Query: 59 LQLI-HSQNIISLKVR 73
+ L+ + + I LK
Sbjct: 95 VALLKRTSSSIVLKAL 110
Score = 50.5 bits (121), Expect = 3e-08
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 92 VDTNKSNLNQNERFPVVPITLEVPPHGKLGCGICKG---PQWKPGIFVQF-TKDACVAKD 147
VD NL V + ++ P LG + G +W I+V +++D
Sbjct: 11 VDLGTENLYFQSMHEKV-VNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRD 69
Query: 148 AGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSC-LLELLVHR 189
+K GD +L +GV+ + +V+ AV+++K + + L
Sbjct: 70 GRIKTGDILLNVDGVELT-EVSRSEAVALLKRTSSSIVLKALE 111
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ
domain, protein, acetylation, cell projection, disease
mutation, membrane; NMR {Homo sapiens}
Length = 128
Score = 73.8 bits (181), Expect = 4e-16
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI-HS 64
GF++ + G F+ +V+P S AE SGL D+I+ +NG +E H +V+ I
Sbjct: 22 YGFNLHSDKSKP-GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG 80
Query: 65 QNIISLKVRS 74
+ L V
Sbjct: 81 GDETKLLVVD 90
Score = 41.4 bits (97), Expect = 8e-05
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 126 KGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLE 184
+ KPG F++ A+ +GL+ D+I+ NGV VS +++ +
Sbjct: 27 HSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCME-GKQHGDVVSAIRAGGDETK 85
Query: 185 LLV 187
LLV
Sbjct: 86 LLV 88
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 72.6 bits (179), Expect = 4e-16
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 3 NGTLGFSIRGGREHT---TGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEV 58
+ +LG S+ GG + G++V V P+ AE G + GD+++ +NG +E ATH +
Sbjct: 15 DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQA 74
Query: 59 LQLI-HSQNIISLKVR 73
++ + ++ ++ L +
Sbjct: 75 VETLRNTGQVVHLLLE 90
Score = 45.3 bits (108), Expect = 1e-06
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 107 VVPITLEVPPHGKLGCGICKG---PQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGV 162
+ + L + LG + G GI+V+ D + GD++LA NGV
Sbjct: 6 IFEVELAKNDNS-LGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGV 64
Query: 163 KFSPDVTFEHAVSVMKSSC-LLELLVHRG 190
T + AV ++++ ++ LL+ +G
Sbjct: 65 SLE-GATHKQAVETLRNTGQVVHLLLEKG 92
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 72.8 bits (179), Expect = 4e-16
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQL 61
LGF I GG+ +GV V + P A+R G L GD I++I G ++ T +V Q+
Sbjct: 25 GSGLGFGIVGGKT--SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQV 82
Query: 62 I-HSQNIISLKVR 73
+ + N + + V
Sbjct: 83 LRNCGNSVRMLVA 95
Score = 43.9 bits (104), Expect = 6e-06
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFS 165
V + L G LG GI G G+ V+ +D L+ GD IL G
Sbjct: 16 VEEVELINDGSG-LGFGIVGGKT--SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQ 72
Query: 166 PDVTFEHAVSVMKSSC-LLELLVHRGVG--LDLFPGGSSG 202
+T E V+++ + +LV R + + G SSG
Sbjct: 73 -GMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSGPSSG 111
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 72.8 bits (179), Expect = 5e-16
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 3 NGTLGFSIRGGREHT-----TGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHS 56
LGFSI GG + ++V+ + A + G L IGD+++ +N +E+ TH
Sbjct: 13 PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHE 72
Query: 57 EVLQLI-HSQNIISLKV-RSVGMIPTKERDKS 86
E + + ++ + + LKV + M ++
Sbjct: 73 EAVTALKNTSDFVYLKVAKPTSMYISRHHHHH 104
Score = 44.6 bits (106), Expect = 3e-06
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 107 VVPITLEVPPHGKLGCGICKG-----PQWKPGIFV-QFTKDACVAKDAGLKCGDQILACN 160
++ I L P G LG I G I+V + + KD L+ GD++LA N
Sbjct: 4 IMEIKLIKGPKG-LGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVN 62
Query: 161 GVKFSPDVTFEHAVSVMKSSC-LLELLVHRGVGLDL 195
V +VT E AV+ +K++ + L V + + +
Sbjct: 63 SVSLE-EVTHEEAVTALKNTSDFVYLKVAKPTSMYI 97
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 72.9 bits (179), Expect = 5e-16
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 3 NGTLGFSIRGGREH-----TTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHS 56
LGF+I GG + +G++VS ++ A G L GD+I+ +NG +++ H
Sbjct: 27 PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQ 86
Query: 57 EVLQLI-HSQNIISLKVR 73
+ + L ++ +SL+V+
Sbjct: 87 DAVDLFRNAGYAVSLRVQ 104
Score = 42.4 bits (100), Expect = 3e-05
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 94 TNKSNLNQNERFPVVPITLEVPPHGKLGCGICKG-----PQWKPGIFV-QFTKDACVAKD 147
++ N + I L P G LG I G GI+V + ++ A D
Sbjct: 5 SSGMNGRVDYLVTEEEINLTRGPSG-LGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALD 63
Query: 148 AGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSC-LLELLVHRGVGLDLFP--GGSSG 202
L+ GD+IL+ NG ++ + AV + +++ + L V + + P G SSG
Sbjct: 64 GRLQEGDKILSVNGQDLK-NLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPISGPSSG 120
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 78.1 bits (191), Expect = 6e-16
Identities = 35/182 (19%), Positives = 56/182 (30%), Gaps = 38/182 (20%)
Query: 3 NGTLGFSIRGGREHT--TGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVL 59
LG + + V ++N+ A RSG L IGDQI+ ING + +
Sbjct: 215 GEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQ 274
Query: 60 QLI-HSQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVPPHG 118
+I +N +K+ V P L P
Sbjct: 275 GIIKGLKNQTQVKLNIVSCPPVTT----------------------------VLIKRPDL 306
Query: 119 KLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMK 178
K G + +A+ G++ G +I+ NG E V +
Sbjct: 307 KYQLGFS-----VQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVV-ATAHEKIVQALS 360
Query: 179 SS 180
+S
Sbjct: 361 NS 362
Score = 63.1 bits (152), Expect = 5e-11
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
LGFS++ G + ++ AER G+ +G +II ING + H +++Q +
Sbjct: 307 KYQLGFSVQNG-------IICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQAL 359
Query: 63 -HSQNIISLKV 72
+S I +K
Sbjct: 360 SNSVGEIHMKT 370
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 72.5 bits (178), Expect = 6e-16
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 3 NGTLGFSIRGGREHTTG-VFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQ 60
G+L ++ GG + G V VS V AER G ++ GD+I+ ING + D T +E
Sbjct: 27 EGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEA 86
Query: 61 LI-----HSQNIISLKVRSVGMIPTKERDKSVTW 89
+ + I L V P KE D +T+
Sbjct: 87 ALQKAWNQGGDWIDLVVAVC---PPKEYDDELTF 117
Score = 39.4 bits (92), Expect = 3e-04
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 132 PGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSC-----LLEL 185
+ V + + G+ GD+I+A NG + D T A + ++ + ++L
Sbjct: 43 GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVT-DYTLAEAEAALQKAWNQGGDWIDL 101
Query: 186 LVHR 189
+V
Sbjct: 102 VVAV 105
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 72.5 bits (178), Expect = 7e-16
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQL 61
N GF+I GG E + V +V P A + G + GD I+ IN + TH++V++L
Sbjct: 29 NMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKL 88
Query: 62 IHS---QNIISLKVR 73
S ++L +
Sbjct: 89 FQSVPIGQSVNLVLC 103
Score = 47.0 bits (112), Expect = 8e-07
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFS 165
+ TL+ G G I G + + V+ D A+D ++ GD I+ N V
Sbjct: 20 FLSTTLKKSNMG-FGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVL 78
Query: 166 PDVTFEHAVSVMKSSCL---LELLVHRGVGLDLFPGGSSGYNSST 207
T V + +S + + L++ RG L P + S+
Sbjct: 79 -GHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPANSGPSS 122
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 72.0 bits (177), Expect = 9e-16
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 3 NGTLGFSIRGGREH-TTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQ 60
LG SI GG++ + + V + A R G L GDQI+ +NG + +++H E +
Sbjct: 27 RSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAIT 86
Query: 61 LI-HSQNIISLKVR 73
+ + + L V
Sbjct: 87 ALRQTPQKVRLVVY 100
Score = 43.2 bits (102), Expect = 1e-05
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 110 ITLEVPPHGKLGCGICKGP-QWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFSPD 167
I + G LG I G I + ++ A+D L GDQIL NGV +
Sbjct: 21 IEISKGRSG-LGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLR-N 78
Query: 168 VTFEHAVSVMKSSC-LLELLVHRGVGLDLF--PGGSSG 202
+ E A++ ++ + + L+V+R G SSG
Sbjct: 79 SSHEEAITALRQTPQKVRLVVYRDEAHYRDEESGPSSG 116
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 71.7 bits (176), Expect = 1e-15
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 3 NGTLGFSIRGGREHTTG-VFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQ 60
TLG +I GG + ++ A G L +G I+ +NG + H E +
Sbjct: 16 AATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAAR 75
Query: 61 LIHS------QNIISLKVRSVGMIPTK 81
+I ++ I V P+
Sbjct: 76 IIAEAFKTKDRDYIDFLVTEFNSGPSS 102
Score = 37.8 bits (88), Expect = 8e-04
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 116 PHGKLGCGICKGPQWK-PGIFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHA 173
LG I G + P + + LK G IL NG+ A
Sbjct: 15 SAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLR-GKEHREA 73
Query: 174 VSVMKSS 180
++ +
Sbjct: 74 ARIIAEA 80
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA,
structural genomics, riken structural
genomics/proteomics initiative, unknown function; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 110
Score = 71.6 bits (176), Expect = 1e-15
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 3 NGTLGFSIRGGRE---HTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEV 58
LG + G G+++ + P S A G L +GD+I+ +NG + +
Sbjct: 18 PSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRA 77
Query: 59 LQLI-HSQNIISLKVR 73
+ LI H + V
Sbjct: 78 VDLIRHGGKKMRFLVA 93
Score = 45.8 bits (109), Expect = 1e-06
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 107 VVPITLEVPPHGKLGCGICKG---PQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGV 162
V + LE P G LG G+ G PG+++Q + A D L GD+IL NG
Sbjct: 9 VFTVELERGPSG-LGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGS 67
Query: 163 KFSPDVTFEHAVSVMKSS-CLLELLVHRG---VGLDLFPGGSSG 202
+ + AV +++ + LV + + G SSG
Sbjct: 68 SLL-GLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSGPSSG 110
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 72.1 bits (177), Expect = 2e-15
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQL 61
+ GF++ GG E + + ++ A G + GD I+ +N + TH++V+++
Sbjct: 28 SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKI 87
Query: 62 IHSQ---NIISLKVR 73
S + L++
Sbjct: 88 FQSIPIGASVDLELC 102
Score = 46.7 bits (111), Expect = 1e-06
Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFS 165
+ L G G + G + + ++ D A D ++ GD I++ N
Sbjct: 19 FIHTKLRKSSRG-FGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVL 77
Query: 166 PDVTFEHAVSVMKSSCL---LELLVHRGVGLDLFPGGSSGYNSSTSSL 210
T V + +S + ++L + RG L P + ++ ++
Sbjct: 78 -GHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNTSLVTSVAI 124
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 70.8 bits (174), Expect = 2e-15
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 3 NGTLGFSIRGGREHT-----TGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHS 56
LGFSI GG + ++++ + A++ G L IGD+++ +N ++D H
Sbjct: 13 PKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHE 72
Query: 57 EVLQLI-HSQNIISLKVR 73
E + + ++ +++ LKV
Sbjct: 73 EAVASLKNTSDMVYLKVA 90
Score = 45.4 bits (108), Expect = 2e-06
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 107 VVPITLEVPPHGKLGCGICKG-----PQWKPGIFV-QFTKDACVAKDAGLKCGDQILACN 160
++ + L P G LG I G I++ + + KD L+ GD++LA N
Sbjct: 4 IMEVNLLKGPKG-LGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVN 62
Query: 161 GVKFSPDVTFEHAVSVMKSSC-LLELLVHR 189
DV E AV+ +K++ ++ L V +
Sbjct: 63 NTNLQ-DVRHEEAVASLKNTSDMVYLKVAK 91
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 71.2 bits (175), Expect = 2e-15
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 3 NGTLGFSIRGGREHT-----TGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHS 56
LGFSI GG + ++V+ + A++ G L +GD+++ +N + +E+ TH
Sbjct: 34 PKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHE 93
Query: 57 EVLQLI-HSQNIISLKVR 73
E + ++ ++ ++ LKV
Sbjct: 94 EAVAILKNTSEVVYLKVG 111
Score = 47.0 bits (112), Expect = 7e-07
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 10/105 (9%)
Query: 92 VDTNKSNLNQNERFPVVPITLEVPPHGKLGCGICKG-----PQWKPGIFV-QFTKDACVA 145
VD NL + VV I L P G LG I G I+V +
Sbjct: 11 VDLGTENL-YFQSMTVVEIKLFKGPKG-LGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQ 68
Query: 146 KDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSC-LLELLVHR 189
KD L+ GD++L N +VT E AV+++K++ ++ L V +
Sbjct: 69 KDGRLQVGDRLLMVNNYSLE-EVTHEEAVAILKNTSEVVYLKVGK 112
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 73.4 bits (179), Expect = 2e-15
Identities = 38/194 (19%), Positives = 69/194 (35%), Gaps = 19/194 (9%)
Query: 3 NGTLGFSIRGGREHT--------TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDAT 54
+ LGFSI GG G+FV+ V+P+ A + L GD+II+ NG+ +
Sbjct: 1 SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIE 59
Query: 55 HSEVLQLIHSQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVP----- 109
H + + L+ + + + +++ V + + + VV
Sbjct: 60 HGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTS 119
Query: 110 --ITLEVPPHGKLGCGICKGPQWKPGIFVQFT--KDACVAKDAGLKCG-DQILACNGVKF 164
I+ + +G I G +FT + A +GLK G D +
Sbjct: 120 LLISWDASYYGVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAYSD 179
Query: 165 SPDVTFEHAVSVMK 178
+S+
Sbjct: 180 YYGSHHYSPISINY 193
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 70.9 bits (174), Expect = 2e-15
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
+ LG ++R + V +S + AE+SGLL GD+++ ING I +EV L
Sbjct: 36 DIPLGATVRNEMD---SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDL 92
Query: 62 I-HSQNIISLKVR 73
+ ++ +
Sbjct: 93 LSDMHGTLTFVLI 105
Score = 35.9 bits (83), Expect = 0.005
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFV-QFTKDACVAKDAGLKCGDQILACNGVKFS 165
V + +E LG + + + + K K L GD++L NG++
Sbjct: 26 VKIVRIEKARDIPLGATVRNE---MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIR 82
Query: 166 PDVTFEHAVSVMKSS 180
++
Sbjct: 83 -GKDVNEVFDLLSDM 96
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 70.5 bits (173), Expect = 2e-15
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
LG +I+ E T + V+ + A+RSGL+ +GD++ +NG P+ED E++Q+
Sbjct: 14 REPLGATIKKD-EQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQI 72
Query: 62 I-HSQNIISLKV 72
+ SQ I+ K+
Sbjct: 73 LAQSQGAITFKI 84
Score = 31.5 bits (72), Expect = 0.11
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 117 HGKLGCGICKGPQWKPGIFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVS 175
LG I K + I V + + + + GD++ NG+ D E +
Sbjct: 14 REPLGATI-KKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVE-DKRPEEIIQ 71
Query: 176 VMKSS 180
++ S
Sbjct: 72 ILAQS 76
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1qav_B
Length = 112
Score = 71.0 bits (174), Expect = 3e-15
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
G LGF ++ V +S++ AE+SGL+ GD I+ +N P+ D ++ L++
Sbjct: 12 VGGLGFLVKERVSKP-PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEV 70
Query: 62 I-HSQNIISLKV 72
+ + + +
Sbjct: 71 LRGIASETHVVL 82
Score = 40.9 bits (96), Expect = 9e-05
Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFV-QFTKDACVAKDAGLKCGDQILACNGVKFS 165
V+ + L G LG + K KP + + + + ++ GD ILA N
Sbjct: 2 VISVRLFKRKVGGLGFLV-KERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLV 60
Query: 166 PDVTFEHAVSVMKSS---CLLELLVHRGVGLDLFPGGSSGYNSSTSS 209
D++++ A+ V++ + L++ G + + + +
Sbjct: 61 -DLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKT 106
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 70.9 bits (174), Expect = 3e-15
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 3 NGTLGFSIRGGRE-HTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQ 60
LGFS+ GG + + V V P A + G + G++++ ING ++ TH + L
Sbjct: 26 GAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALA 85
Query: 61 LIHS 64
++
Sbjct: 86 ILRQ 89
Score = 39.0 bits (91), Expect = 5e-04
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 131 KPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHR 189
I V + +++ ++ G+++L+ NG T A+++++ + V
Sbjct: 41 NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLK-GTTHHDALAILRQAREPRQAVI- 98
Query: 190 GVGLDLFPGGSSGYNSSTSS 209
V L P NSS S
Sbjct: 99 -VTRKLTPEAMPDLNSSGPS 117
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 74.4 bits (182), Expect = 4e-15
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQL 61
G LG SI+GGRE+ + +S + A+++ L +GD I+ +NG + ATH E +Q
Sbjct: 88 AGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQA 147
Query: 62 IH--SQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKS 97
+ + ++ + P + T D+ +
Sbjct: 148 LKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSPPA 185
Score = 47.0 bits (111), Expect = 4e-06
Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 5/150 (3%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDV 168
+T+ G LG I G + K I + + K + L GD IL+ NG S
Sbjct: 81 VTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLS-SA 139
Query: 169 TFEHAVSVM-KSSCLLELLVHRGVGLDLFPGGSSGYNSST--SSLNGDNQDEPTLVQFKR 225
T + AV + K+ + L V + + S+G S S Q +P+ +
Sbjct: 140 THDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPGPQP 199
Query: 226 LSVVKEESVGNGRSNSLEDVTQARAEPRTL 255
++ + + V + T EPR L
Sbjct: 200 RNLSEAKHVSLKMAYVSRRCTPTDPEPRYL 229
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 70.1 bits (172), Expect = 4e-15
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 3 NGTLGFSIRGGREHTT---------GVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIED 52
LG SIRGG G+F+S V P A R G L +G +++ +N +
Sbjct: 20 GERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLG 79
Query: 53 ATHSEVLQLI-HSQNIISLKVR 73
TH E +QL+ + +++ V
Sbjct: 80 LTHGEAVQLLRSVGDTLTVLVC 101
Score = 48.1 bits (115), Expect = 2e-07
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 110 ITLEVPPHGKLGCGICKG---------PQWKPGIFV-QFTKDACVAKDAGLKCGDQILAC 159
+ ++ P +LG I G GIF+ + + +D L+ G ++L
Sbjct: 13 LCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEV 72
Query: 160 NGVKFSPDVTFEHAVSVMKSSC-LLELLVHRG 190
N +T AV +++S L +LV G
Sbjct: 73 NQQSLL-GLTHGEAVQLLRSVGDTLTVLVCDG 103
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 70.1 bits (172), Expect = 5e-15
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 3 NGTLGFSIRGGR------EHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATH 55
+ LG SI G G+FV V A R G + + D ++ ++G + T
Sbjct: 14 SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQ 73
Query: 56 SEVLQLI-HSQNIISLKVR 73
S ++ +++ + +
Sbjct: 74 SFAASVLRNTKGRVRFMIG 92
Score = 43.1 bits (102), Expect = 1e-05
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 107 VVPITLEVPPHGKLGCGICKG------PQWKPGIFVQF-TKDACVAKDAGLKCGDQILAC 159
+ P+ LE G LG I K GIFV+ T+ +D ++ D ++
Sbjct: 5 LFPVELEKDSEG-LGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEV 63
Query: 160 NGVKFSPDVTFEHAVSVMKSSC-LLELLVHR 189
+G VT A SV++++ + ++ R
Sbjct: 64 DGTSLV-GVTQSFAASVLRNTKGRVRFMIGR 93
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens}
PDB: 2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 69.7 bits (171), Expect = 5e-15
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 6 LGFSIRGGREHT------TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVL 59
G +I GGR++ T + +S+V AE L D++ +NG +++ H+ +
Sbjct: 21 FGIAISGGRDNPHFQSGETSIVISDVLKGGPAEG-QLQENDRVAMVNGVSMDNVEHAFAV 79
Query: 60 QLI-HSQNIISLKVR 73
Q + S + +R
Sbjct: 80 QQLRKSGKNAKITIR 94
Score = 42.4 bits (100), Expect = 2e-05
Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 110 ITLEVPPHGKLGCGICKG------PQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVK 163
+TL P G I G + I + A + L+ D++ NGV
Sbjct: 11 VTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPA-EGQLQENDRVAMVNGVS 69
Query: 164 FSPDVTFEHAVSVMKSSC-LLELLVHR 189
+V AV ++ S ++ + R
Sbjct: 70 MD-NVEHAFAVQQLRKSGKNAKITIRR 95
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 70.1 bits (172), Expect = 6e-15
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 3 NGTLGFSIRGGREHT---TGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEV 58
LGFSI GG ++V V K A G L GDQII +NG +E TH E
Sbjct: 35 PDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEA 94
Query: 59 LQLI-HSQNIISLKVRSVGMIPTKERDKSV 87
+ ++ ++ ++L V + SV
Sbjct: 95 VAILKRTKGTVTLMVL-------SSDETSV 117
Score = 49.7 bits (119), Expect = 8e-08
Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 92 VDTNKSNLNQNERFPVVPITLEVPPHGKLGCGICKG---PQWKPGIFVQF-TKDACVAKD 147
VD NL ITLE P G LG I G P I+V+ ++D
Sbjct: 11 VDLGTENLYFQSMPQCKSITLERGPDG-LGFSIVGGYGSPHGDLPIYVKTVFAKGAASED 69
Query: 148 AGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSC-LLELLVHRG 190
LK GDQI+A NG VT E AV+++K + + L+V
Sbjct: 70 GRLKRGDQIIAVNGQSLE-GVTHEEAVAILKRTKGTVTLMVLSS 112
>3e17_A Tight junction protein ZO-2; domain swapping, alternative
promoter usage, alternative splicing, cell junction,
cell membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 68.9 bits (169), Expect = 7e-15
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQL 61
+ +R G + +FV + A + G L GD I++ING E+ + ++ +L
Sbjct: 10 RANEEYGLRLG----SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKL 65
Query: 62 I-HSQNIISLKVR 73
I S+ + L V
Sbjct: 66 IEKSRGKLQLVVL 78
Score = 42.7 bits (101), Expect = 9e-06
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFVQ-FTKDACVAKDAGLKCGDQILACNGVKFS 165
++ + L G+ G IFV+ T+ KD L GD IL NG
Sbjct: 1 MIGVLLMKSRAN-EEYGLRLGS----QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTE 55
Query: 166 PDVTFEHAVSVMKSSC-LLELLVHR 189
+++ A +++ S L+L+V R
Sbjct: 56 -NMSLTDARKLIEKSRGKLQLVVLR 79
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural
genomics, alternative splicing, cell cycle, cell
division, cell junction, coiled coil; NMR {Mus
musculus} PDB: 2ogp_A
Length = 111
Score = 69.3 bits (170), Expect = 7e-15
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 3 NGTLGFSIRGGREHT---TGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEV 58
LGFSI ++V N+ P+ A + G L GD++I +NG + + EV
Sbjct: 21 TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV 80
Query: 59 LQLIHS---QNIISLKVR 73
+ L+ S + +SL V
Sbjct: 81 VSLLRSTKMEGTVSLLVF 98
Score = 45.8 bits (109), Expect = 1e-06
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 100 NQNERFPVVPITLEVPPHGKLGCGICKG---PQWKPGIFVQF-TKDACVAKDAGLKCGDQ 155
N + + I L+ G LG I I+V+ +D LK GD+
Sbjct: 5 NTKKVGKRLNIQLKKGTEG-LGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDR 63
Query: 156 ILACNGVKFSPDVTFEHAVSVMKSS---CLLELLVHRG 190
++ NGV + + E VS+++S+ + LLV R
Sbjct: 64 LIEVNGVDLA-GKSQEEVVSLLRSTKMEGTVSLLVFRQ 100
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 69.7 bits (171), Expect = 8e-15
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 3 NGTLGFSIRGGREHTT---GVFVSNVEPKSEAERSG-LLIGDQIIRINGFPI-EDATHSE 57
+G LGFS+ G R G+FV ++ S A R G L DQI+ ING + + TH +
Sbjct: 31 SGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQ 90
Query: 58 VLQLI-HSQNIISLKVR 73
+ ++ +++ + L +
Sbjct: 91 AISILQKAKDTVQLVIA 107
Score = 57.4 bits (139), Expect = 2e-10
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 107 VVPITLEVPPHGKLGCGICKG---PQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGV 162
V L PP G LG + + + GIFVQ + + +D LK DQILA NG
Sbjct: 21 VEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQ 80
Query: 163 KFSPDVTFEHAVSVMKSSC-LLELLVHRG 190
+T + A+S+++ + ++L++ RG
Sbjct: 81 ALDQTITHQQAISILQKAKDTVQLVIARG 109
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 69.8 bits (171), Expect = 8e-15
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 6 LGFSIRGGREHTTG---VFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQL 61
LG + GG+ +G F++ V+ S A+ G L GD+++ NG ++ AT EV +
Sbjct: 50 LGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNI 109
Query: 62 IHS---QNIISLKVR 73
I + + L V
Sbjct: 110 ILESKPEPQVELVVS 124
Score = 47.5 bits (113), Expect = 6e-07
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 15/100 (15%)
Query: 110 ITLEVPPHGKLGCGICKG---PQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFS 165
++ LG + G + F+ K + L+ GD++L NG
Sbjct: 40 GSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQ 99
Query: 166 PDVTFEHAVSVMKSSC---LLELLVHRGVGLDLFPGGSSG 202
TFE +++ S +EL+V R G SSG
Sbjct: 100 -GATFEEVYNIILESKPEPQVELVVSR-------SGPSSG 131
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain,
scaffolding protein, membrane, sensory transduction,
vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A
2qku_A
Length = 96
Score = 68.9 bits (169), Expect = 9e-15
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQLI-H 63
LG S+ G ++++ E L GD I + NG +E L
Sbjct: 22 LGLSLSPNEI---GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKG 78
Query: 64 SQNIISLKV 72
+ +S++V
Sbjct: 79 ANGKVSMEV 87
Score = 45.4 bits (108), Expect = 1e-06
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVA-KDAGLKCGDQILACNGVKFS 165
+ L +LG + + G + D+ L+ GD I NG
Sbjct: 9 KFNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALE 65
Query: 166 PDVTFEHAVSVMKSSC-LLELLVHR 189
+ F+ + ++ K + + + V R
Sbjct: 66 -GLPFQVSYALFKGANGKVSMEVTR 89
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 68.9 bits (169), Expect = 1e-14
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 3 NGTLGFSIRGGRE-----HTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHS 56
+LG SI G R+ TG++V ++ P S A G + D+I+R++ ++ S
Sbjct: 24 TSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQS 83
Query: 57 EVLQLI-HSQNIISLKVR 73
+V++++ ++ N + L +
Sbjct: 84 DVVEVLRNAGNPVRLLLI 101
Score = 47.7 bits (114), Expect = 3e-07
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 97 SNLNQNERFPVVPITLEVPPHGKLGCGICKG-----PQWKPGIFVQF-TKDACVAKDAGL 150
S+ + + V + E LG I GI+V+ + A D +
Sbjct: 6 SDASGFSLYSVE-LFREKDTSS-LGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRI 63
Query: 151 KCGDQILACNGVKFSPDVTFEHAVSVMKSSC-LLELLVHR 189
+ D+IL + V + V V++++ + LL+ R
Sbjct: 64 EPNDKILRVDDVNVQ-GMAQSDVVEVLRNAGNPVRLLLIR 102
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide;
peptide binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 68.6 bits (168), Expect = 1e-14
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQLI-H 63
LG S+ G ++++ E L GD I + NG +E L
Sbjct: 16 LGLSLSPNEI---GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG 72
Query: 64 SQNIISLKV 72
+ +S++V
Sbjct: 73 ANGKVSMEV 81
Score = 46.6 bits (111), Expect = 6e-07
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 12/111 (10%)
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVA-KDAGLKCGDQILACNGVKFS 165
+ L +LG + + G + D+ L+ GD I NG
Sbjct: 3 KFNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALE 59
Query: 166 PDVTFEHAVSVMKSSC-LLELLVHRGVGLDLFPGGSSGYNSSTSSLNGDNQ 215
+ F+ ++ K + + + V R GS G S L NQ
Sbjct: 60 -GLPFQVCYALFKGANGKVSMEVTR------PKPGSGGSGSLVPRLLRRNQ 103
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS,
nitric oxide synthase, oxidoreductase; NMR {Rattus
norvegicus} SCOP: b.36.1.1
Length = 127
Score = 69.1 bits (169), Expect = 1e-14
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
G LGF ++ V +S++ AE+SGL+ GD I+ +N P+ D ++ L++
Sbjct: 19 VGGLGFLVKERVSKP-PVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEV 77
Query: 62 I 62
+
Sbjct: 78 L 78
Score = 40.6 bits (95), Expect = 1e-04
Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFV-QFTKDACVAKDAGLKCGDQILACNGVKFS 165
V+ + L G LG + K KP + + + + ++ GD ILA N
Sbjct: 9 VISVRLFKRKVGGLGFLV-KERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLV 67
Query: 166 PDVTFEHAVSVMKSS---CLLELLVHRGVGLDLFPGGSSGYNSSTSS 209
D++++ A+ V++ + L++ G + + + +
Sbjct: 68 -DLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKT 113
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 68.5 bits (168), Expect = 1e-14
Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 6 LGFSIRGGR---EHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQL 61
+G SI + + G++V +V A+ G L GDQ++ ++G + + +L
Sbjct: 23 MGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAEL 82
Query: 62 I-HSQNIISLKVR 73
+ + ++++L+V
Sbjct: 83 MTRTSSVVTLEVA 95
Score = 48.1 bits (115), Expect = 2e-07
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 110 ITLEVPPHGKLGCGICKG---PQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFS 165
IT+ + +G I Q K GI+V+ K D L GDQ+L+ +G
Sbjct: 13 ITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLV 72
Query: 166 PDVTFEHAVSVMKSSC-LLELLVHR 189
++ E A +M + ++ L V +
Sbjct: 73 -GLSQERAAELMTRTSSVVTLEVAK 96
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 69.0 bits (169), Expect = 1e-14
Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 3 NGTLGFSIRGGR-----EHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHS 56
+LG I G +G++V +V P S A +G + + D+I+ ++G I+ +
Sbjct: 26 GQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANH 85
Query: 57 EVLQLI-HSQNIISLKVR 73
+V++++ ++ ++ L +
Sbjct: 86 DVVEVLRNAGQVVHLTLV 103
Score = 41.7 bits (98), Expect = 6e-05
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 8/120 (6%)
Query: 97 SNLNQNERFPVVPITLEVPPHGKLGCGICKG-----PQWKPGIFV-QFTKDACVAKDAGL 150
S + + F + L LG I GI+V + + +
Sbjct: 6 SGGSDSSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHI 65
Query: 151 KCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLELLVHRGVGLDLFPGGSSGYNSSTSS 209
+ D+I+A +GV V V++++ ++ L + R + T S
Sbjct: 66 QVNDKIVAVDGVNIQ-GFANHDVVEVLRNAGQVVHLTLVRRKTSSSTSPLEPPSDRGTVS 124
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 69.2 bits (169), Expect = 2e-14
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 1 MFNGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQ 60
NG G R E +FV V+ A +GL GD+II++NG + T+S+V+
Sbjct: 44 EENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIA 103
Query: 61 LIH-SQNIISLKV 72
LI S + L V
Sbjct: 104 LIQNSDTTLELSV 116
Score = 39.1 bits (91), Expect = 4e-04
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 116 PHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVS 175
+G G + IFV+ K+ A +AGL GD+I+ NG T+ ++
Sbjct: 45 ENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVI-GKTYSQVIA 103
Query: 176 VMKSS-CLLELLVHRGVGLDLFPGGSSG 202
++++S LEL V + G SSG
Sbjct: 104 LIQNSDTTLELSV-----MPKDSGPSSG 126
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 69.0 bits (169), Expect = 2e-14
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 3 NGTLGFSIRGGREHT-TGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQ 60
LG S+ G ++ + +FV + P+ A G + IGD+++ IN + +H
Sbjct: 35 KNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASA 94
Query: 61 LI-HSQNIISLKVR 73
+I + + + L
Sbjct: 95 IIKTAPSKVKLVFI 108
Score = 44.4 bits (105), Expect = 6e-06
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 107 VVPITLEVPPHGKLGCGICKGP-QWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKF 164
+ I LE +G LG + + + IFV + A D ++ GD++L N
Sbjct: 26 LHIIELEKDKNG-LGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQIL 84
Query: 165 SPDVTFEHAVSVMKSSC-LLELLVHRGVGL--DLFPGGSSG 202
+ ++A +++K++ ++L+ R + G SSG
Sbjct: 85 Y-GRSHQNASAIIKTAPSKVKLVFIRNEDAVNQMASGPSSG 124
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 68.1 bits (167), Expect = 2e-14
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 3 NGTLGFSIRGGR------EHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATH 55
LG SI G G+FV V A+R G + + DQI+ ++G + T
Sbjct: 19 EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQ 78
Query: 56 SEVLQLI-HSQNIISLKVR 73
+ ++ +++ + +
Sbjct: 79 NFAATVLRNTKGNVRFVIG 97
Score = 41.5 bits (98), Expect = 4e-05
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 100 NQNERFPVVPITLEVPPHGKLG---CGICKGPQWK---PGIFVQF-TKDACVAKDAGLKC 152
+ + + P+ LE G LG G+ G GIFV+ T+ +D ++
Sbjct: 3 SGSSGLELFPVELEKDEDG-LGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQV 61
Query: 153 GDQILACNGVKFSPDVTFEHAVSVMKSS-CLLELLVHR 189
DQI+ +G+ VT A +V++++ + ++ R
Sbjct: 62 NDQIVEVDGISLV-GVTQNFAATVLRNTKGNVRFVIGR 98
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 67.0 bits (164), Expect = 3e-14
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 3 NGTLGFSIRGGR--------EHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDAT 54
+ LGFSI GG G+FV+ V+P+ A + L GD+II+ NG+ +
Sbjct: 12 DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIE 70
Query: 55 HSEVLQLI-HSQNIISLKVR 73
H + + L+ QN + L +
Sbjct: 71 HGQAVSLLKTFQNTVELIIV 90
Score = 40.8 bits (96), Expect = 5e-05
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 110 ITLEVPPHGKLGCGICKG--------PQWKPGIFVQFTKDACVAKDAGLKCGDQILACNG 161
I + V +LG I G GIFV + A L+ GD+I+ NG
Sbjct: 5 IRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA-SKLLQPGDKIIQANG 63
Query: 162 VKFSPDVTFEHAVSVMKSS-CLLELLVHR 189
F ++ AVS++K+ +EL++ R
Sbjct: 64 YSFI-NIEHGQAVSLLKTFQNTVELIIVR 91
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 67.0 bits (164), Expect = 4e-14
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
+G ++ + V+ + R G L +GD+I+ ING + + + ++ +
Sbjct: 23 EEPMGICLKLNEKQ--SCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKA 80
Query: 62 I-HSQNIISLKV 72
+ ++ +ISLKV
Sbjct: 81 MKETKGMISLKV 92
Score = 36.6 bits (85), Expect = 0.002
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 97 SNLNQNERFPVVPITLEVPPHGKLGCGICKGPQWKPGIFV-QFTKDACVAKDAGLKCGDQ 155
+ + + V I E +G + K V + + + L GD+
Sbjct: 3 HHHHHHSGHMVRLIQFEKVTEEPMGICLKLNE--KQSCTVARILHGGMIHRQGSLHVGDE 60
Query: 156 ILACNGVKFSPDVTFEHAVSVMKSSC 181
IL NG + + + + MK +
Sbjct: 61 ILEINGTNVT-NHSVDQLQKAMKETK 85
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling
protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 67.1 bits (164), Expect = 4e-14
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 3 NGTLGFSIRGGR--------EHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDAT 54
+ LGFSI GG G+FV+ V+P+ A + L GD+II+ NG+ +
Sbjct: 20 DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIE 78
Query: 55 HSEVLQLI-HSQNIISLKVR 73
H + + L+ QN + L +
Sbjct: 79 HGQAVSLLKTFQNTVELIIV 98
Score = 44.3 bits (105), Expect = 4e-06
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 110 ITLEVPPHGKLGCGICKG--------PQWKPGIFVQFTKDACVAKDAGLKCGDQILACNG 161
I + V +LG I G GIFV + A L+ GD+I+ NG
Sbjct: 13 IRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPA-SKLLQPGDKIIQANG 71
Query: 162 VKFSPDVTFEHAVSVMKSSC-LLELLVHR 189
F ++ AVS++K+ +EL++ R
Sbjct: 72 YSFI-NIEHGQAVSLLKTFQNTVELIIVR 99
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 67.4 bits (165), Expect = 5e-14
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 3 NGTLGFSIRGGREHT---TGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEV 58
LGFSI ++V N+ P+ A + G L GD++I +NG + + EV
Sbjct: 40 TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEV 99
Query: 59 LQLIHS---QNIISLKVR 73
+ L+ S + +SL V
Sbjct: 100 VSLLRSTKMEGTVSLLVF 117
Score = 46.2 bits (110), Expect = 1e-06
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 96 KSNLNQNERFPVVPITLEVPPHGKLGCGICKG---PQWKPGIFVQF-TKDACVAKDAGLK 151
+ + N + + I L+ G LG I I+V+ +D LK
Sbjct: 20 QGSYNTKKIGKRLNIQLKKGTEG-LGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLK 78
Query: 152 CGDQILACNGVKFSPDVTFEHAVSVMKSS---CLLELLVHR 189
GD+++ NGV + E VS+++S+ + LLV R
Sbjct: 79 AGDRLIEVNGVDLV-GKSQEEVVSLLRSTKMEGTVSLLVFR 118
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 67.5 bits (165), Expect = 5e-14
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 3 NGTLGFSIRGGREHTT---GVFVSNVEPKSEAERSG-LLIGDQIIRINGFPI-EDATHSE 57
G LGFS+ R +FV +V+P S A+R L DQI+ IN P+ ++ +H +
Sbjct: 36 TGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQ 95
Query: 58 VLQLI-HSQNIISLKVR 73
+ L+ + + L V
Sbjct: 96 AIALLQQTTGSLRLIVA 112
Score = 60.2 bits (146), Expect = 2e-11
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 93 DTNKSNLNQNERFPVVPITLEVPPHGKLGCGICKG---PQWKPGIFVQF-TKDACVAKDA 148
D N + + I +E P G LG + K IFV+ + +D
Sbjct: 12 DFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQ 71
Query: 149 GLKCGDQILACNGVKFSPDVTFEHAVSVMKSSC-LLELLVHRGVG--LDLFPGGSSG 202
LK DQILA N +++ + A+++++ + L L+V R G SSG
Sbjct: 72 RLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSGPSSG 128
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 66.7 bits (163), Expect = 7e-14
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 6 LGFSIRGGREHT------TGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVL 59
G ++ GGR++ T + +S+V P A+ L D+++ +NG P+ED HS +
Sbjct: 28 FGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAV 86
Query: 60 QLI-HSQNIISLKVR 73
Q + S I ++ V+
Sbjct: 87 QQLRKSGKIAAIVVK 101
Score = 39.7 bits (93), Expect = 2e-04
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 110 ITLEVPPHGKLGCGICKG------PQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVK 163
+TL+ G + G + I + A D L+ D+++ NG
Sbjct: 18 VTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA-DGLLQENDRVVMVNGTP 76
Query: 164 FSPDVTFEHAVSVMKSS-CLLELLVHRGVGLDLFP--GGSSG 202
DV AV ++ S + ++V R + + P G SSG
Sbjct: 77 ME-DVLHSFAVQQLRKSGKIAAIVVKRPRKVQVAPLSGPSSG 117
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 65.8 bits (161), Expect = 8e-14
Identities = 14/73 (19%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
+ +G +++ + V+ + R G L +GD+I ING + + T ++ ++
Sbjct: 12 DEPMGITLKMNELN--HCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKM 69
Query: 62 I-HSQNIISLKVR 73
+ + I+ K+
Sbjct: 70 LREMRGSITFKIV 82
Score = 34.6 bits (80), Expect = 0.007
Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDV 168
+ + +G + V + + + L GD+I NG+ + +
Sbjct: 5 VQFQKNTDEPMGITLKMNE--LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVA-NQ 61
Query: 169 TFEHAVSVMKSSC 181
T E +++
Sbjct: 62 TVEQLQKMLREMR 74
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 66.3 bits (162), Expect = 8e-14
Identities = 17/78 (21%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 3 NGTLGFSIRGGREHT----TGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE 57
LGFSI ++ + + + ++ AERSG LL GD+++ +N + +++ + +E
Sbjct: 25 CKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAE 84
Query: 58 VLQLIHS--QNIISLKVR 73
++++ + ++ L +
Sbjct: 85 AVEILKAVPPGLVHLGIC 102
Score = 41.2 bits (97), Expect = 5e-05
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 107 VVPITLEVPPHGKLGCGICKG----PQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNG 161
V + L G LG I + I ++ D + GL GD++++ N
Sbjct: 16 VKIVELVKDCKG-LGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNE 74
Query: 162 VKFSPDVTFEHAVSVMKSSC--LLELLVHRG 190
+ + AV ++K+ L+ L + G
Sbjct: 75 YCLD-NTSLAEAVEILKAVPPGLVHLGICSG 104
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 65.9 bits (161), Expect = 9e-14
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 3 NGTLGFSIRGG--REHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVL 59
LG ++ ++N+ AERSG L IGD++ ING + +
Sbjct: 20 GEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQ 79
Query: 60 QLI-HSQNIISLKVRSVGMIP 79
+ +++ S+ + V P
Sbjct: 80 AAVRETKSQTSVTLSIVHCPP 100
Score = 42.8 bits (101), Expect = 1e-05
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 110 ITLEVPPHGKLGCGICKGP--QWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVKFSP 166
+ LE LG + + P + + L GD++ A NG
Sbjct: 13 VHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLV- 71
Query: 167 DVTFEHAVSVMKSS 180
+ + ++ +
Sbjct: 72 GLPLAACQAAVRET 85
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation,
cell projection, disease mutation, membrane,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 216
Score = 69.0 bits (168), Expect = 1e-13
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI-HS 64
GF++ + G F+ +V+P S AE SGL D+I+ +NG +E H +V+ I
Sbjct: 22 YGFNLHSDKSKP-GQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG 80
Query: 65 QNIISLKVRS 74
+ L V
Sbjct: 81 GDETKLLVVD 90
Score = 43.2 bits (101), Expect = 6e-05
Identities = 34/185 (18%), Positives = 61/185 (32%), Gaps = 17/185 (9%)
Query: 126 KGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS-CLLE 184
+ KPG F++ A+ +GL+ D+I+ NGV VS +++ +
Sbjct: 27 HSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCM-EGKQHGDVVSAIRAGGDETK 85
Query: 185 LLVHRGVGLDLF--------------PGGSSGYNSSTSSLNGDNQDEPTLVQFKRLSVVK 230
LLV + F P N N ++ R ++V+
Sbjct: 86 LLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREALAEAALESPRPALVR 145
Query: 231 EESVGNGRSNSLEDVTQARAEPRTLHNGGGGASLSSAIS-EEIKRRSERLNSGKEFVKVE 289
S + +D + L IS K R+ + S K +++
Sbjct: 146 SASSDTSEELNSQDSPPKQDSTAPSSTSSSDPILDFNISLAMAKERAHQKRSSKRAPQMD 205
Query: 290 TTKNN 294
+K N
Sbjct: 206 WSKKN 210
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 66.4 bits (162), Expect = 2e-13
Identities = 16/77 (20%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 3 NGTLGFSIRGGREHT---TGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEV 58
+ LGFS+ GG+ + ++ + + +E+S + GD+I+++ G ++ T E
Sbjct: 39 SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEA 98
Query: 59 LQLIHS--QNIISLKVR 73
+I + +++ +R
Sbjct: 99 WNIIKALPDGPVTIVIR 115
Score = 40.9 bits (96), Expect = 1e-04
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 107 VVPITLEVPPHGKLGCGICKG---PQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGV 162
V +TLE G LG + G + + K A + ++ GD+IL G
Sbjct: 30 VCTVTLEKMSAG-LGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGT 88
Query: 163 KFSPDVTFEHAVSVMKSS 180
+T A +++K+
Sbjct: 89 AMQ-GLTRFEAWNIIKAL 105
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 65.5 bits (160), Expect = 2e-13
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 6 LGFSIRGGRE--HTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLI 62
LG I GG V++ V P + + G L GDQ++ IN + + E +I
Sbjct: 27 LGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSII 86
Score = 45.9 bits (109), Expect = 1e-06
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 103 ERFPVVPITLEVPPHGKLGCGIC--KGPQWKPGIFVQF-TKDACVAKDAGLKCGDQILAC 159
+R P + G LG I P +++ KD LK GDQ+++
Sbjct: 11 DRDPAFRVITVTKETG-LGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSI 69
Query: 160 NGVKFSPDVTFEHAVSVMKSS 180
N V+FE A S++ +
Sbjct: 70 NKESMI-GVSFEEAKSIITRA 89
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 64.6 bits (158), Expect = 2e-13
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS- 64
GF+I G V + GL GD I+ +N ++ TH++V+ ++
Sbjct: 16 FGFTIADSPGGG-GQRVKQIVD--SPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVES 72
Query: 65 --QNIISLKVR 73
+ ++L V+
Sbjct: 73 PKGSEVTLLVQ 83
Score = 47.3 bits (113), Expect = 3e-07
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSP 166
++ + + P G G I P G V+ D+ + GLK GD I+ N
Sbjct: 4 LITVHIVKGPMG-FGFTIADSPG-GGGQRVKQIVDS--PRSRGLKEGDLIVEVNKKNVQ- 58
Query: 167 DVTFEHAVSVMKSSCL---LELLVHRG 190
+T V ++ S + LLV R
Sbjct: 59 ALTHNQVVDMLVESPKGSEVTLLVQRQ 85
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 65.1 bits (159), Expect = 3e-13
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 3 NGTLGFSIRGGREH--------TTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDA 53
+ +LG S+ + G++V V P+ AE G + GD+++ +NG +E A
Sbjct: 19 DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGA 78
Query: 54 THSEVLQLI-HSQNIISLKVRSVGMIPTKE 82
TH + ++ + ++ ++ L + +KE
Sbjct: 79 THKQAVETLRNTGQVVHLLLEKGQSPTSKE 108
Score = 41.6 bits (98), Expect = 4e-05
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 107 VVPITLEVPPHGKLGCGICKG--------PQWKPGIFV-QFTKDACVAKDAGLKCGDQIL 157
+ + L + LG + GI+V D + GD++L
Sbjct: 10 IFEVELAKNDNS-LGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVL 68
Query: 158 ACNGVKFSPDVTFEHAVSVMKSSC-LLELLVHRG 190
A NGV T + AV ++++ ++ LL+ +G
Sbjct: 69 AVNGVSLE-GATHKQAVETLRNTGQVVHLLLEKG 101
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM,
tight junction, cell adhesio; 2.50A {Homo sapiens} PDB:
3tsw_A 3lh5_A
Length = 391
Score = 69.9 bits (170), Expect = 3e-13
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
++G + GG + G+FV+ V S A + GL GDQI+R+N + E + +
Sbjct: 18 GDSVGLRLAGGNDV--GIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFL 75
Query: 63 HSQN 66
Sbjct: 76 LDLP 79
Score = 47.5 bits (112), Expect = 4e-06
Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 10/180 (5%)
Query: 118 GKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVM 177
+G + G GIFV + A GL+ GDQIL N V F+ ++ E AV +
Sbjct: 19 DSVGLRLAGGN--DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFT-NIIREEAVLFL 75
Query: 178 KSSC---LLELLVHRGVGLDLFPGGSSGYNSSTSSLNGDNQ-DEPTLVQFKRLSVVKEES 233
+ +L + + S +S + + + + P + F + V +
Sbjct: 76 LDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFR--- 132
Query: 234 VGNGRSNSLEDVTQARAEPRTLHNGGGGASLSSAISEEIKRRSERLNSGKEFVKVETTKN 293
V + N A + G + +E++ L + + +
Sbjct: 133 VVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADFWRF 192
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 64.7 bits (158), Expect = 3e-13
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 6 LGFSIRGGREHT--TGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLI 62
LG SI G G+++ ++ G + GD ++++N E+ ++ + ++++
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVL 78
Query: 63 ----HSQNIISLKVRSVGMIPTKERDKS 86
H I L V G E
Sbjct: 79 RDIVHKPGPIVLTVAKSGGGSGNEVWID 106
Score = 53.2 bits (128), Expect = 3e-09
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 107 VVPITLEVPPHGKLGCGIC--KGPQWKPGIFVQF-TKDACVAKDAGLKCGDQILACNGVK 163
++ +TL + + LG I + GI++ K VA D ++ GD +L N +
Sbjct: 6 IITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN 65
Query: 164 FSPDVTFEHAVSVMKSSCLLELLVH 188
F +++ + AV V++ +
Sbjct: 66 FE-NMSNDDAVRVLRDIVHKPGPIV 89
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 63.8 bits (156), Expect = 4e-13
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
+ +R + +FV + S A R G + GD +++ING E+ + ++ L
Sbjct: 10 RKNEEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTL 65
Query: 62 I-HSQNIISLKVR 73
I S+ + + V+
Sbjct: 66 IERSKGKLKMVVQ 78
Score = 42.6 bits (101), Expect = 9e-06
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 133 GIFVQ-FTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSC-LLELLVHR 189
IFV+ ++D+ A+D ++ GD +L NG +++ A ++++ S L+++V R
Sbjct: 22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTE-NMSLTDAKTLIERSKGKLKMVVQR 79
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 64.9 bits (158), Expect = 4e-13
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 6 LGFSIRGGR--EHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLI 62
LG ++ E G+++S ++P S A + G + GD+II+ING +++ + L
Sbjct: 34 LGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREEAVALLTS 93
Query: 63 HSQNIISLKVR 73
SL +
Sbjct: 94 EENKNFSLLIA 104
Score = 49.1 bits (117), Expect = 1e-07
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 102 NERFPVVPITLE-VPPHGKLGCGICKGP--QWKPGIFV-QFTKDACVAKDAGLKCGDQIL 157
E + + L + KLG +C + GI++ + ++ AKD ++ GD+I+
Sbjct: 15 REELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRII 74
Query: 158 ACNGVKFSPDVTFEHAVSVM--KSSCLLELLVHR 189
NG++ E AV+++ + + LL+ R
Sbjct: 75 QINGIEV---QNREEAVALLTSEENKNFSLLIAR 105
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 63.6 bits (155), Expect = 5e-13
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQL 61
+ +R + +FV + S A R G + GD +++ING E+ + ++ L
Sbjct: 12 AKNEEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTL 67
Query: 62 IH-SQNIISLKVR 73
I S+ + + V+
Sbjct: 68 IERSKGKLKMVVQ 80
Score = 44.3 bits (105), Expect = 3e-06
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 109 PITLEVP-PHGKLGCGICKGPQWKPGIFVQ-FTKDACVAKDAGLKCGDQILACNGVKFSP 166
P + + G+ IFV+ ++D+ A+D ++ GD +L NG
Sbjct: 3 PTKVTLVKSAKNEEYGLRLAS----HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTE- 57
Query: 167 DVTFEHAVSVMKSSC-LLELLVHRGVGLDL 195
+++ A ++++ S L+++V R L
Sbjct: 58 NMSLTDAKTLIERSKGKLKMVVQRDERATL 87
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 96
Score = 62.8 bits (153), Expect = 1e-12
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS- 64
GF I + V V A L GDQI+++N P ED + + ++
Sbjct: 23 YGFHISESL----PLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILREA 77
Query: 65 QNIISLKVR 73
++ +S+ V
Sbjct: 78 EDSLSITVV 86
Score = 41.2 bits (97), Expect = 5e-05
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 133 GIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSC-LLELLVHRGV 191
+ V A L GDQIL N D+++E AV +++ + L + V R
Sbjct: 32 PLTVVAVTAGGSA-HGKLFPGDQILQMNNEPAE-DLSWERAVDILREAEDSLSITVVRCT 89
Query: 192 G 192
Sbjct: 90 S 90
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 67.6 bits (164), Expect = 2e-12
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
++G + GG + G+FV+ V S A + GL GDQI+R+N + E + +
Sbjct: 10 GDSVGLRLAGGNDV--GIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFL 67
Query: 63 H 63
Sbjct: 68 L 68
Score = 43.8 bits (102), Expect = 7e-05
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 118 GKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVM 177
+G + G GIFV + A GL+ GDQIL N V F+ ++ E AV +
Sbjct: 11 DSVGLRLAGGN--DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFT-NIIREEAVLFL 67
Query: 178 KSSCLLELL 186
E +
Sbjct: 68 LDLPKGEEV 76
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 63.4 bits (154), Expect = 4e-12
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 3 NGTLGFSIRGGR------EHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATH 55
+ LG SI G G+FV V A R G + + D ++ ++G + T
Sbjct: 90 SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQ 149
Query: 56 SEVLQLI-HSQNIISLKVR 73
S ++ +++ + +
Sbjct: 150 SFAASVLRNTKGRVRFMIG 168
Score = 41.5 bits (97), Expect = 1e-04
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 100 NQNERFPVVPITLEVPPHGKLGCGICKG------PQWKPGIFV-QFTKDACVAKDAGLKC 152
+ ER + P+ LE G LG I K GIFV T+ +D ++
Sbjct: 74 KRVERLELFPVELEKDSEG-LGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQV 132
Query: 153 GDQILACNGVKFSPDVTFEHAVSVMKSS-CLLELLVHR 189
D ++ +G VT A SV++++ + ++ R
Sbjct: 133 NDLLVEVDGTSLV-GVTQSFAASVLRNTKGRVRFMIGR 169
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 62.1 bits (151), Expect = 4e-12
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 3 NGTLGFSIRGGREHTT----GVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSE 57
+ LG S++G + T G+F+ ++ A + G L + DQ+I +NG + ++ E
Sbjct: 36 SAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHE 95
Query: 58 VLQLI 62
++ +
Sbjct: 96 AMETL 100
Score = 46.3 bits (110), Expect = 1e-06
Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 8/109 (7%)
Query: 101 QNERFPVVPITLEVPPHGKLGC----GICKGPQWKPGIFV-QFTKDACVAKDAGLKCGDQ 155
++ + I L LG + GIF+ KD L+ DQ
Sbjct: 20 ESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQ 79
Query: 156 ILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVGLDLF--PGGSSG 202
++A NG + A+ ++ S +E + + L + G SSG
Sbjct: 80 LIAVNGETLL-GKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGPSSG 127
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 59.5 bits (144), Expect = 4e-11
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSG-LLIGDQIIRINGFPIEDATHSEVLQLIHS 64
LG + + +S++ K A G L GD +I + + T E L+L+ +
Sbjct: 40 LGLVVIQNGP---YLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQN 96
Query: 65 ---QNIISLKVR 73
++ +K
Sbjct: 97 ITIGTVLQIKAY 108
Score = 36.8 bits (85), Expect = 0.003
Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 100 NQNERFPVVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVA-KDAGLKCGDQILA 158
+ + V+ L V G LG + + P + + + A D L+ GD +++
Sbjct: 21 SVSSLNKVIQTKLTVGNLG-LGLVVIQN---GPYLQISHLINKGAAASDGILQPGDVLIS 76
Query: 159 CNGVKFSPDVTFEHAVSVMKSSC---LLELLVHRG 190
T + ++++ +L++ +RG
Sbjct: 77 VGHANVL-GYTLREFLKLLQNITIGTVLQIKAYRG 110
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A
{Homo sapiens}
Length = 95
Score = 57.8 bits (140), Expect = 6e-11
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
+LG +I F+ ++ + + +GD I ING I H +V +
Sbjct: 15 EDSLGLTITDNGV--GYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKK 72
Query: 62 I 62
+
Sbjct: 73 L 73
Score = 31.2 bits (71), Expect = 0.15
Identities = 7/48 (14%), Positives = 13/48 (27%), Gaps = 2/48 (4%)
Query: 133 GIFVQ-FTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKS 179
F++ + + GD I + NG +K
Sbjct: 29 YAFIKRIKDGGVIDSVKTICVGDHIESINGENIV-GWRHYDVAKKLKE 75
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 96
Score = 55.9 bits (135), Expect = 3e-10
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQ 65
GF+I G V + GL GD I+ IN +++ +H+EV+ ++
Sbjct: 23 FGFTIADSPT---GQRVKQILDIQGC--PGLCEGDLIVEINQQNVQNLSHTEVVDILKDC 77
Query: 66 ---NIISLKVR 73
+ SL +
Sbjct: 78 PIGSETSLIIH 88
Score = 44.7 bits (106), Expect = 3e-06
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 16/99 (16%)
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSP 166
++ +T+ G G I P G V+ D GL GD I+ N
Sbjct: 11 LMTLTIVKGAQG-FGFTIADSPT---GQRVKQILDI--QGCPGLCEGDLIVEINQQNVQ- 63
Query: 167 DVTFEHAVSVMKSSCL---LELLVHRGVGLDLFPGGSSG 202
+++ V ++K + L++HRG G SSG
Sbjct: 64 NLSHTEVVDILKDCPIGSETSLIIHRG------SGPSSG 96
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 55.5 bits (134), Expect = 3e-10
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 3 NGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQL 61
LG + R + ++ + + GLL +GD I +NG P+ + +L
Sbjct: 17 GEHLGVTFRVEGG---ELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGS-DPRALQEL 72
Query: 62 I-HSQNIISLKV 72
+ ++ + LK+
Sbjct: 73 LRNASGSVILKI 84
Score = 34.0 bits (78), Expect = 0.014
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 6/72 (8%)
Query: 110 ITLEVPPHGKLGCGICKGPQWKPGIFV-QFTKDACVAKDAGLKCGDQILACNGVKFSPDV 168
+ + LG + + + VA+ L GD I NG
Sbjct: 10 VGIRKTAGEHLGVTFRVE---GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQ--PVGS 64
Query: 169 TFEHAVSVMKSS 180
+++++
Sbjct: 65 DPRALQELLRNA 76
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 59.2 bits (144), Expect = 1e-09
Identities = 45/186 (24%), Positives = 68/186 (36%), Gaps = 26/186 (13%)
Query: 12 GGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNI---I 68
G E G VS V P S AE +GL GD I +IN I A ++V I + +
Sbjct: 276 GYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQA--TQVKTTISLLRVGSTV 333
Query: 69 SLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFP----VVPITLEVPPHGKLGCGI 124
+ V K S + +++ L N F + E PPHG +
Sbjct: 334 KIIVERDN----KPLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQESPPHGNV---- 385
Query: 125 CKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLE 184
G+ V + AG++ GD I++ N + + + K L
Sbjct: 386 -------IGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQEKKKELL-- 436
Query: 185 LLVHRG 190
+ V RG
Sbjct: 437 VQVLRG 442
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria,
peptid module, hydrolase; 2.75A {Homo sapiens} SCOP:
b.36.1.4
Length = 113
Score = 53.5 bits (129), Expect = 3e-09
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQ 65
L + GV + V S A R+GL GD I+ I +++A +V + + +Q
Sbjct: 23 LQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRTQ 80
Query: 66 NIISLKVRSVGMIPTKERDKSVT 88
+ +++++R + VT
Sbjct: 81 SQLAVQIRRGR----ETLTLYVT 99
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 57.3 bits (139), Expect = 4e-09
Identities = 35/181 (19%), Positives = 64/181 (35%), Gaps = 22/181 (12%)
Query: 13 GREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNI---IS 69
+ G FVS V P S + ++G+ GD I +NG P+ +E+ I + +
Sbjct: 258 NLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVK 315
Query: 70 LKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVPPHGKLGCGICKGPQ 129
L + G K + VT ++ ++ + TL +
Sbjct: 316 LGLLRNG----KPLEVEVTLDTSTSSSASAEMITP-ALEGATLSDG----------QLKD 360
Query: 130 WKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHR 189
GI + A AGL+ D I+ N + + ++ + + L + R
Sbjct: 361 GGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKPAI--IALQIVR 418
Query: 190 G 190
G
Sbjct: 419 G 419
Score = 45.0 bits (107), Expect = 3e-05
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS- 64
S ++ G+ + V S A ++GL D II +N + +E+ +++ +
Sbjct: 351 ATLSDGQLKDGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAK 408
Query: 65 QNIISLKVR 73
II+L++
Sbjct: 409 PAIIALQIV 417
Score = 28.4 bits (64), Expect = 5.0
Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 25/134 (18%)
Query: 145 AKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRG-------VGLDLFP 197
+ AG+K GD I + NG + ++ + ++L + R V LD
Sbjct: 276 SAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTST 335
Query: 198 GGSSGYNSSTSSLNGDNQDEPTLVQFKR---LSVVKEES---------------VGNGRS 239
S+ T +L G + L + + V + S V R
Sbjct: 336 SSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRV 395
Query: 240 NSLEDVTQARAEPR 253
NS+ ++ + A
Sbjct: 396 NSIAEMRKVLAAKP 409
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 56.6 bits (137), Expect = 7e-09
Identities = 35/182 (19%), Positives = 62/182 (34%), Gaps = 27/182 (14%)
Query: 13 GREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNI---IS 69
+ G FVS V P S A ++G+ GD I +NG PI + + + + + ++
Sbjct: 281 KVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLT 338
Query: 70 LKVRSVGMIPTKERDKSVTW-KFVDTNKSNLNQNERFPVVPITLEVPPHGKLGCGICKGP 128
L + G K+ + ++ + + + ++ +
Sbjct: 339 LGLLRDG----KQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQ----------- 383
Query: 129 QWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVH 188
G+ V K A GLK GD I+ N + S L L +
Sbjct: 384 ----GVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSV--LALNIQ 437
Query: 189 RG 190
RG
Sbjct: 438 RG 439
Score = 27.7 bits (62), Expect = 9.0
Identities = 21/131 (16%), Positives = 36/131 (27%), Gaps = 22/131 (16%)
Query: 145 AKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRG-------VGLDLFP 197
A AG+K GD I + NG S V M L L + R + L
Sbjct: 299 AAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSS 358
Query: 198 GGSSGYNSSTSSLNGDNQDEPTLVQFKRLSVVKEES---------------VGNGRSNSL 242
+S + + G Q ++ VK + ++
Sbjct: 359 QNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI 418
Query: 243 EDVTQARAEPR 253
++ +
Sbjct: 419 AELRKVLDSKP 429
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 52.3 bits (126), Expect = 8e-09
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQ 65
L S E ++G++V V P S ++R G+ GD I+++NG P+ D+ SE+ + + ++
Sbjct: 23 LKASNPDFPEVSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS--SELQEAVLTE 80
Query: 66 NIISLKVRSVGMIPTKERDKSVT 88
+ + L+VR + S+
Sbjct: 81 SPLLLEVRRGN----DDLLFSIA 99
Score = 29.6 bits (67), Expect = 0.67
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 14/67 (20%)
Query: 145 AKDAGLKCGDQILACNG--VKFSPDVTFEHAVSVMKSSCLLELLVHRG-------VGLDL 195
++ G++ GD I+ NG + S ++ AV L L V RG + ++
Sbjct: 48 SQRGGIQDGDIIVKVNGRPLVDSSELQ--EAVLTESP---LLLEVRRGNDDLLFSIAPEV 102
Query: 196 FPGGSSG 202
GG G
Sbjct: 103 VMGGGFG 109
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 54.2 bits (131), Expect = 3e-08
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQ 65
L R + +G ++ V P + AE GL D II ING + A ++V +I +
Sbjct: 242 LKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSA--NDVSDVIKRE 299
Query: 66 NIISLKVRSVGMIPTKERDKSVT 88
+ +++ VR ++ +V
Sbjct: 300 STLNMVVRRGN----EDIMITVI 318
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 53.0 bits (128), Expect = 7e-08
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQ 65
L + GV + V S A R+GL GD I+ I +++A +V + + +Q
Sbjct: 244 LQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRTQ 301
Query: 66 NIISLKVRSVGMIPTKERDKSVT 88
+ +++++R + VT
Sbjct: 302 SQLAVQIRRGR----ETLTLYVT 320
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 3; structural genomics consortium, SGC, PDZ
domain, signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 49.5 bits (118), Expect = 7e-08
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 6 LGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQ 65
GF+I TG V + + GL GD I I +++ TH +V++++
Sbjct: 25 FGFAIADS---PTGQKVKMILDSQWCQ--GLQKGDIIKEIYHQNVQNLTHLQVVEVLKQF 79
Query: 66 ---NIISLKVR 73
+ L +
Sbjct: 80 PVGADVPLLIL 90
Score = 40.6 bits (95), Expect = 1e-04
Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 10/106 (9%)
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSP 166
+V I L P G G I P G V+ D+ GL+ GD I
Sbjct: 13 LVTIPLIKGPKG-FGFAIADSPT---GQKVKMILDS--QWCQGLQKGDIIKEIYHQNVQ- 65
Query: 167 DVTFEHAVSVMKSSCL---LELLVHRGVGLDLFPGGSSGYNSSTSS 209
++T V V+K + + LL+ RG G S +
Sbjct: 66 NLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKMGSGSGQIT 111
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 2e-07
Identities = 74/462 (16%), Positives = 127/462 (27%), Gaps = 145/462 (31%)
Query: 15 EHTTGVFVSN-----VEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNIIS 69
+ + + K + L + + EVL+ N
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFW--TLLSKQEEMVQKFVEEVLR----INYKF 93
Query: 70 LKVRSVGMIPTKERDKS-VTWKFVDTNKSNLNQNERFPVVPIT------------LEVPP 116
L I T++R S +T +++ N N+ F ++ LE+ P
Sbjct: 94 LMSP----IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 117 ------HGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKC--GDQILACN-GVKFSPD 167
G LG G K W D C ++C +I N SP+
Sbjct: 150 AKNVLIDGVLGSG--K--TW-------VALDVC--LSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 168 VTFEHAVS----VMKSSC----------------------LLE-------LLVHRGV--- 191
E + + LL+ LLV V
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 192 -GLDLFPGGS-----SGYNSSTSSLNGDNQDEPTLVQFKRLSVVKEESVG------NGRS 239
+ F + + T L+ +L +++ +E + R
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH-SMTLTPDEVKSLLLKYLDCRP 315
Query: 240 NSL-EDVTQARAEPRTLHNGGGGASLSSAISEEIKRRSERLNSGKEFVKVETTKNNIEED 298
L +V PR L S I+E I+ ++ K V + IE
Sbjct: 316 QDLPREVLT--TNPRRL----------SIIAESIRDGLATWDNWKH-VNCDKLTTIIE-- 360
Query: 299 SSYHLKLQTLMKEVKEAHNKM--FPGSQEEKDKCSDSPPS------CPTPDYDTMSVTSH 350
SS + L+ E ++ +++ FP + P D M V
Sbjct: 361 SSLN-VLEP--AEYRKMFDRLSVFP-----PS--AHIPTILLSLIWFDVIKSDVMVV--- 407
Query: 351 TNNNKVDMASFKSFSAAPAPAKPPPVYFPPPSGFQDEKNKPE 392
+ +S K + PS + + K K E
Sbjct: 408 -------VNKLHKYSLVEKQPKESTISI--PSIYLELKVKLE 440
Score = 46.8 bits (110), Expect = 1e-05
Identities = 76/469 (16%), Positives = 136/469 (28%), Gaps = 135/469 (28%)
Query: 28 KS----EAERSGLLIGDQIIRINGFPI---------EDATHSEVLQLIHSQNIISLKVRS 74
K+ + S ++ F I T E+LQ + Q + RS
Sbjct: 163 KTWVALDVCLS-----YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 75 VGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITL-EVPPHGKLGCGICKGPQWKPG 133
K R S+ L +++ + + L V
Sbjct: 218 DHSSNIKLRIHSI-----QAELRRLLKSKPYENCLLVLLNV---------------QNAK 257
Query: 134 IFVQF---------TKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLE 184
+ F T+ V D + A ++ +H + +
Sbjct: 258 AWNAFNLSCKILLTTRFKQVT--------DFLSAATTTH----ISLDHHSMTLTPDEVKS 305
Query: 185 LLVHRGVGL---DLFPGGSSGYNSSTSSLNGDN-QDEPTL------VQFKRLSVVKEESV 234
LL+ + + DL P N S+ ++ +D V +L+ + E S+
Sbjct: 306 LLL-KYLDCRPQDL-PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 235 GNGRSNSLEDVTQARAEPRTLHNGGGGASLS-----SAISEEI-------KRRSERLNSG 282
N LE AE R + + LS + I + +S+ +
Sbjct: 364 -----NVLEP-----AEYRKMFD-----RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 283 KEFVK---VETTKNNIEEDSSYH---LKLQTLMKEVKEAHNKMFPGSQEEKDKCSDSPPS 336
+ K VE K E S L+L+ ++ H + K SD
Sbjct: 409 NKLHKYSLVE--KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 337 CPTPDYDTMSVTSHTNNNKVDMA-SFKSFSAAPAPAKPPPVY--FPPPSGFQDEKNKPEA 393
Y + H N ++ F V+ F F ++K + ++
Sbjct: 467 PYLDQYFYSHIGHHLKN--IEHPERMTLF---------RMVFLDF----RFLEQKIRHDS 511
Query: 394 TAVKPAPPPVVTL------REYPNPNEPK----VPSKFKFLSNNKPACY 432
TA + + TL + Y N+PK V + FL +
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 51.1 bits (123), Expect = 3e-07
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIH 63
+LG + ++ T G + V A +G+ G + +++ PI A ++ +
Sbjct: 229 ASLGVQVTNDKD-TLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSA--DALVAAVR 285
Query: 64 SQNI---ISLKV-RSVGMIPTKERDKSVT 88
S+ ++L G R VT
Sbjct: 286 SKAPGATVALTFQDPSG----GSRTVQVT 310
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 49.1 bits (118), Expect = 1e-06
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 13 GREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATH 55
G + G+ V+ V P A +G+ + D II ++ P A
Sbjct: 239 GIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALE 281
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 2e-06
Identities = 81/478 (16%), Positives = 134/478 (28%), Gaps = 187/478 (39%)
Query: 2 FNGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGF------PIEDATH 55
FN L E T G F ++ EP + AE L+G + G+ P +
Sbjct: 37 FNKILP-------EPTEG-FAADDEPTTPAE----LVG----KFLGYVSSLVEPSKVGQF 80
Query: 56 SEVLQL--------------IHS----------------QNIIS--LKVRSVGMIPTKER 83
+VL L IH+ + +I + R + P ++
Sbjct: 81 DQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 84 DKSVTWKFVDTNKSNL--------NQNERF--------------------------PVVP 109
S ++ V + L N ++ F ++
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 110 ITLEVPPHGKLGCGICKGPQW-------------------KPGIFV-QFTKDACVAKDAG 149
TL+ G I +W P I V Q AK G
Sbjct: 201 TTLDAEKVFTQGLNIL---EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 150 LK-------------CGDQILACNGVKFSPDV-TFEHAVSVMKSSCLLELLVHRGV-GLD 194
++ + + +F +V + +L GV +
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA-----ITVLFFIGVRCYE 312
Query: 195 LFPGGSSGYNSSTSSLNGDNQDEPTLVQFKRLSVVKEESVGNGRSNSLEDVTQARAE-PR 253
+P S + SL N+ P+ + LS+ + + V + + P
Sbjct: 313 AYPNTSLPPSILEDSLEN-NEGVPSPM----LSI-----SNLTQEQVQDYVNKTNSHLPA 362
Query: 254 ------TLHNG-------GGGASL---------SSAISEEIKRR---SER-LNSGKEFVK 287
+L NG G SL + A S + R SER L F+
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 288 VETTKNNIEEDSS-YHLKLQTLMKEVKEAHNKMFPGSQEEKDKCSDSPPSCPTPDYDT 344
V +S +H L+ + NK K+ S + P YDT
Sbjct: 423 V----------ASPFH---SHLLVPASDLINK-----DLVKNNVSFNAKDIQIPVYDT 462
Score = 40.8 bits (95), Expect = 0.001
Identities = 47/265 (17%), Positives = 78/265 (29%), Gaps = 97/265 (36%)
Query: 5 TLGFSIRGGREHTTGVF-VSNVEPK--SEAERSGLLIGDQIIRINGFP-----IEDATHS 56
T+ F I G R + + +++ P ++ + G P I + T
Sbjct: 301 TVLFFI-GVRCYEA--YPNTSLPPSILEDSLENN----------EGVPSPMLSISNLTQE 347
Query: 57 EVLQLIHSQN--------I-ISLK------V-----RS-VGMIPTKERDKSVTWKFVDTN 95
+V ++ N + ISL V +S G+ T + K+
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA--------- 398
Query: 96 KSNLNQN-----ERFPVV-----PITLEVPPHGKL---------GCGICKGPQWKP---G 133
S L+Q+ ER P+ P H L + +
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVA--SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 134 IFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRGVG- 192
I V T D D L+ S ++ +++ E
Sbjct: 457 IPVYDTFDG---SD--LR-----------VLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Query: 193 -LDLFPGGSSGYNSSTSSLNGDNQD 216
LD PGG+SG L N+D
Sbjct: 501 ILDFGPGGASG----LGVLTHRNKD 521
Score = 34.3 bits (78), Expect = 0.11
Identities = 55/346 (15%), Positives = 97/346 (28%), Gaps = 138/346 (39%)
Query: 2 FNGTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQL 61
F T GFSI + ++N P + G G + IR N + T +
Sbjct: 1653 FKDTYGFSI-------LDIVINN--PVNLTIHFGGEKG-KRIRENYSAMIFETIVD---- 1698
Query: 62 IHSQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVPPHGKLG 121
+ + K+ E S T++ + K L+ + T
Sbjct: 1699 ---GKLKTEKI----FKEINEHSTSYTFR---SEKGLLSATQ------FT---------- 1732
Query: 122 CGICKGPQWKPGIFVQFTKDACVA--KDAGLKCGDQI-----------LACN-GVKFSPD 167
Q P + + + A K GL D LA V S
Sbjct: 1733 -------Q--PALTL--MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV-MS-- 1778
Query: 168 VTFEHAVSVMKSSCLLELLVHRGVGLDLFPGGSSGYNSSTSSLNGDNQDEPTLVQFKRLS 227
E V E++ +RG +++
Sbjct: 1779 --IESLV---------EVVFYRG-------------------------------MTMQVA 1796
Query: 228 VVKEESVGNGRSNSLEDVTQARAEPRTLHNGGGGASLSSAISEEIKRRSERL----N--- 280
V ++E GRSN P + +L + E + +R+ L N
Sbjct: 1797 VPRDE---LGRSN----YGMIAINPGRVAASFSQEAL-QYVVERVGKRTGWLVEIVNYNV 1848
Query: 281 -------SGKEFVKVETTKNNIEEDSSYHLKLQTL-----MKEVKE 314
+G + ++T N + + + L ++EV+
Sbjct: 1849 ENQQYVAAG-DLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 31.2 bits (70), Expect = 0.97
Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 43/140 (30%)
Query: 188 HRGVGLDLFPGGSSGYNSSTSSLNGDNQDEPTLVQFKRLSVVKEESVGNGRSNSLEDVTQ 247
+G+G+DL Y +S ++ QD V + R +++ G S+ D+
Sbjct: 1628 EQGMGMDL-------YKTSKAA-----QD----V-WNRADNHFKDTYGF----SILDIVI 1666
Query: 248 ARAEPRTLHNGGGGASLSSAISEEIKRRSERLNSGKEFVKVETTKNNIEEDSSYHLKLQT 307
T+H GG + I+ + E LK +
Sbjct: 1667 NNPVNLTIHFGGEK-------GKRIRENYSAM--------------IFETIVDGKLKTEK 1705
Query: 308 LMKEVKEAHNK-MFPGSQEE 326
+ KE+ E F +
Sbjct: 1706 IFKEINEHSTSYTFRSEKGL 1725
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 44.4 bits (104), Expect = 6e-06
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 3 NGTLGFSI---RGGREHTTGVFVSNVEPK--SEAERSGLLIGDQIIRINGFPIEDATHSE 57
GFS+ + T V V V S R+ + GD+I+ ING P+ E
Sbjct: 26 ECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEE 85
Query: 58 VLQLI-HSQNIISLKVR 73
V I + + L +
Sbjct: 86 VEDAIKQTSQTLQLLIE 102
Score = 27.1 bits (59), Expect = 5.6
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 107 VVPITLEVPPHGKLGCGIC---KGPQWKPGIFVQFTKDACVAKD--AGLKCGDQILACNG 161
V I++ + G + + + V+ ++ + + GD+IL NG
Sbjct: 16 VTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEING 75
Query: 162 VKFSPDVTFEHAVSVMKSSC-LLELLVHR 189
+ E +K + L+LL+
Sbjct: 76 TPVR-TLRVEEVEDAIKQTSQTLQLLIEH 103
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 46.9 bits (112), Expect = 6e-06
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 13 GREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDAT 54
+ G FVS V P S + ++G+ GD I +NG P+
Sbjct: 258 NLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFA 299
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 43.0 bits (102), Expect = 9e-06
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 19 GVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNI---ISLKVRSV 75
G++ S+V A+ + +GD+II +G + A +++ I S+ ++LK+
Sbjct: 2 GIYASSVVENMPAK-GKIEVGDKIISADGKNYQSA--EKLIDYISSKKAGDKVTLKIERE 58
Query: 76 GMIPTKERDKSVT 88
KE+ ++T
Sbjct: 59 E----KEKRVTLT 67
Score = 28.4 bits (64), Expect = 1.5
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 147 DAGLKCGDQILACNGVKFSPDVTFEHAVSVMK 178
++ GD+I++ +G + +S K
Sbjct: 15 KGKIEVGDKIISADGKNYQSAEKLIDYISSKK 46
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 46.7 bits (111), Expect = 9e-06
Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 5/117 (4%)
Query: 7 GFSIRGGREHTTG--VFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS 64
+++ ++ T +S V P S AE +GL G I+ +NG I SE+LQ
Sbjct: 77 DYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKVESELLQGSTR 136
Query: 65 QNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVPPHGKLG 121
Q I + VG + +L PV + K+G
Sbjct: 137 QLQIGVYKEVVGEDGEVTGGVVPIGETTMPASRSLVDK---PVHRFEIIPWNGKKVG 190
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 42.3 bits (100), Expect = 2e-05
Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 17 TTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNI---ISLKVR 73
GV+V +V P A L GD+I I+G PI + +++ + + + +
Sbjct: 4 AKGVYVMSVLPNMPAA-GRLEAGDRIAAIDGQPINTS--EQIVSYVREKQAGDRVRVTFI 60
Query: 74 SVGMIPTKERDKSVT 88
K+ + +
Sbjct: 61 RDR----KQHEAELV 71
Score = 27.6 bits (62), Expect = 2.6
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 147 DAGLKCGDQILACNGVKFSPDVTFEHAVSVMK 178
L+ GD+I A +G + V +
Sbjct: 19 AGRLEAGDRIAAIDGQPINTSEQIVSYVREKQ 50
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 44.7 bits (105), Expect = 2e-05
Identities = 35/184 (19%), Positives = 57/184 (30%), Gaps = 41/184 (22%)
Query: 17 TTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATH--SEVLQL-------IHSQN 66
T G V V+ S R+GL D I+ ING + ++L+ + +
Sbjct: 15 TEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYS 74
Query: 67 IISLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFPVVPITLEVPPHGKLGCGICK 126
+L++R + P+ S NE V LEV +
Sbjct: 75 SKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVWHV---LEVESNS-------- 123
Query: 127 GPQWKPGIFVQFTKDACVAKDAGLK-CGDQILACNGVKFSPDVTFEHAVSVMKSSCLLEL 185
A AGL+ D I+ + V + F + L+L
Sbjct: 124 -----------------PAALAGLRPHSDYIIGADTVMNESEDLFSLIETHEAKP--LKL 164
Query: 186 LVHR 189
V+
Sbjct: 165 YVYN 168
Score = 35.8 bits (82), Expect = 0.013
Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 2/80 (2%)
Query: 4 GTLGFSIRGGREHTTGVFVSNVEPKSEAERSGLL-IGDQIIRINGFPIEDATHSEVLQLI 62
G + V VE S A +GL D II + E +++
Sbjct: 98 GVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTVMNESEDLFSLIET- 156
Query: 63 HSQNIISLKVRSVGMIPTKE 82
H + L V + +E
Sbjct: 157 HEAKPLKLYVYNTDTDNCRE 176
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes}
PDB: 2kjk_A 3i1e_A
Length = 100
Score = 42.3 bits (100), Expect = 2e-05
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 10/83 (12%)
Query: 19 GVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNI---ISLKVRSV 75
GV+V +V+ A L GD I I+G + + E + IHS+ + + + +
Sbjct: 8 GVYVMSVKDDVPAA-DVLHAGDLITEIDGNAFKSS--QEFIDYIHSKKVGDTVKINYKHG 64
Query: 76 GMIPTKERDKSVTWKFVDTNKSN 98
K + +D +
Sbjct: 65 D----KNEQADIKLTAIDKKGTP 83
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type
2 secretion system, protein transport, membrane
protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 42.2 bits (99), Expect = 3e-05
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 15 EHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATH-SEVLQLIHSQNIISLKV 72
+ G VS + E GL GD + +NG + D + + Q ++ +SL V
Sbjct: 34 DKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV 92
Score = 34.1 bits (78), Expect = 0.017
Identities = 15/58 (25%), Positives = 22/58 (37%)
Query: 133 GIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRG 190
G V KD + + GL+ GD +A NG+ + M + L V R
Sbjct: 38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERD 95
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type
2 secretion system, protein transport, membrane
protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 41.0 bits (96), Expect = 5e-05
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 16 HTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATH-SEVLQLIHSQNIISLKV 72
G VS + E GL GD + +NG + D + + Q ++ +SL V
Sbjct: 17 KVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV 74
Score = 33.6 bits (77), Expect = 0.017
Identities = 15/58 (25%), Positives = 22/58 (37%)
Query: 133 GIFVQFTKDACVAKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRG 190
G V KD + + GL+ GD +A NG+ + M + L V R
Sbjct: 20 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERD 77
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane
protein, PDZ domain, hydrolase, inner membrane,
membrane, metal-binding; HET: MLY MSE; 0.98A
{Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 40.2 bits (94), Expect = 1e-04
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 22 VSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNIISLKVRSVGMIPTK 81
+ NV+P S A +GL GD+I+ ++G P+ +L + ++L++ G
Sbjct: 8 LENVQPNSAASXAGLQAGDRIVXVDGQPLTQWVTFVMLVRDNPGXSLALEIERQG----S 63
Query: 82 ERDKSVT 88
++
Sbjct: 64 PLSLTLI 70
Score = 27.5 bits (61), Expect = 2.5
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 145 AKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSS--CLLELLVHRG 190
A AGL+ GD+I+ +G + + V +++ + L L + R
Sbjct: 17 ASXAGLQAGDRIVXVDGQPLT---QWVTFVMLVRDNPGXSLALEIERQ 61
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 41.0 bits (97), Expect = 1e-04
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 13 GREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNI---IS 69
T+GV V +V+ A L D I +++ I + +++ +++ +I I
Sbjct: 52 PSNVTSGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIASS--TDLQSALYNHSIGDTIK 108
Query: 70 LKVRSVGMIPTKERDKSVT 88
+ G KE S+
Sbjct: 109 ITYYRNG----KEETTSIK 123
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 39.8 bits (93), Expect = 2e-04
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 10 IRGGREHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATH-SEVLQLIHSQNII 68
+ GV + +V P S A + L G I ING P + T S L+ I +I
Sbjct: 17 LYFQGHQPDGVQIDSVVPGSPASK-VLTPGLVIESINGMPTSNLTTYSAALKTISVGEVI 75
Query: 69 SLKVR 73
++
Sbjct: 76 NITTD 80
Score = 27.5 bits (61), Expect = 4.7
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 147 DAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHRG---VGLDLFPGGSS 201
L G I + NG+ S T+ A+ + ++ + +G + P SS
Sbjct: 39 SKVLTPGLVIESINGMPTSNLTTYSAALKTISVGEVINITTDQGTFHLKTGRNPNNSS 96
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 42.3 bits (98), Expect = 2e-04
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 14 REHTTGVFVSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHSQNIISLKVR 73
+ G+ V NV A +GL GD+II I+ + + +L+ + +++
Sbjct: 492 KASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKRILERYIPGDTVTIHAF 551
Query: 74 SVGMIPTKERDKSVTWK 90
+ +TW+
Sbjct: 552 RRD----ELMTLELTWQ 564
Score = 35.4 bits (80), Expect = 0.039
Identities = 17/144 (11%), Positives = 38/144 (26%), Gaps = 6/144 (4%)
Query: 47 GFPIEDATHSEVLQLIHSQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNLNQNERFP 106
D T L +I ++ + + + V +
Sbjct: 416 SIGTADDTVINWLNQYPGIDISDFLKDALYNKESLSLVELLQNFGVMVQ-----KQVPVD 470
Query: 107 VVPITLEVPPHGKLGCGICKGPQWKPGIFVQFTKDACVAKDAGLKCGDQILACNGVKFSP 166
+ + K G+ V A AGL GD+I+A + ++ +
Sbjct: 471 DNSVGGKASEQPARVNFGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATE 530
Query: 167 DVTFEHAVSVMKSSCLLELLVHRG 190
+ + + + + R
Sbjct: 531 Q-SVKRILERYIPGDTVTIHAFRR 553
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane,
cell membrane, membrane, metal-binding,
metalloprotease, transmembrane; 1.67A {Escherichia coli
k-12} PDB: 2zpl_A
Length = 95
Score = 38.8 bits (90), Expect = 3e-04
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 22 VSNVEPKSEAERSGLLIGDQIIRINGFPIEDATHSEVLQLIHS-QNIISLKVRSVG 76
V + S A + + G ++ ++G D + + ++ V G
Sbjct: 6 VGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFG 61
Score = 26.5 bits (58), Expect = 5.8
Identities = 6/45 (13%), Positives = 15/45 (33%)
Query: 145 AKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMKSSCLLELLVHR 189
A +A + G ++ A +G++ + + V
Sbjct: 15 AAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAP 59
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 39.2 bits (92), Expect = 0.002
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 20/84 (23%)
Query: 19 GVFVSNVEPKSEAERSGL-----------LIGDQIIRINGFPIEDATHSEVLQLIHSQNI 67
GV V + P A ++GL ++GD I +NG + + S++ +++ +
Sbjct: 252 GVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKV 309
Query: 68 ---ISLKVRSVGMIPTKERDKSVT 88
++++V + SVT
Sbjct: 310 GDEVTVEVLRGD----HKEKISVT 329
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 35.7 bits (83), Expect = 0.026
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 31 AERSGLLIGDQIIRINGFPIEDATHSEVLQLI 62
AE++G GD I+ ++G ++ + +V L+
Sbjct: 112 AEKAGARAGDVIVTVDGTAVKGMSLYDVSDLL 143
Score = 29.2 bits (66), Expect = 3.1
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 145 AKDAGLKCGDQILACNGVKFSPDVTFEHAVSVMK 178
A+ AG + GD I+ +G ++ +++
Sbjct: 112 AEKAGARAGDVIVTVDGTAVK-GMSLYDVSDLLQ 144
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis,
CELL_cycle regulation, alternative splicing, cell cycle,
cell division; HET: MSE; 2.50A {Homo sapiens}
Length = 78
Score = 31.4 bits (71), Expect = 0.079
Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 261 GASLSSAISEEIKRR-SERLNSGKEFVKVETTKNNIEEDSSYHLKLQTLMKEVKEAHNKM 319
G+SL SA+S++++ R E ++ + ++ K E+ H KL+ ++ + + ++
Sbjct: 1 GSSLISAVSDKLRWRMKEEMDRAQA--ELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEV 58
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 32.8 bits (74), Expect = 0.15
Identities = 14/62 (22%), Positives = 18/62 (29%)
Query: 359 ASFKSFSAAPAPAKPPPVYFPPPSGFQDEKNKPEATAVKPAPPPVVTLREYPNPNEPKVP 418
S PAPA+P V P+ + + P P P P V
Sbjct: 20 MSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVI 79
Query: 419 SK 420
K
Sbjct: 80 EK 81
Score = 30.5 bits (68), Expect = 0.83
Identities = 17/55 (30%), Positives = 22/55 (40%)
Query: 366 AAPAPAKPPPVYFPPPSGFQDEKNKPEATAVKPAPPPVVTLREYPNPNEPKVPSK 420
PA +PP PPP + + +PE P PVV + P P P K
Sbjct: 40 VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVK 94
Score = 27.4 bits (60), Expect = 7.6
Identities = 12/55 (21%), Positives = 16/55 (29%)
Query: 366 AAPAPAKPPPVYFPPPSGFQDEKNKPEATAVKPAPPPVVTLREYPNPNEPKVPSK 420
P PV P P + EA V P P + P + P +
Sbjct: 48 PQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 102
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Length = 67
Score = 30.1 bits (67), Expect = 0.21
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 238 RSNSLEDVTQARAEPRTLHNGGGGASLSSAISEEIKRRSERLNSGKEFVKVETTKNNIEE 297
R +LE+ +A E GGG EE+K++ E L G E KVE +EE
Sbjct: 3 RVKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEE 62
Query: 298 D 298
+
Sbjct: 63 E 63
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 30.9 bits (69), Expect = 0.97
Identities = 8/49 (16%), Positives = 9/49 (18%)
Query: 367 APAPAKPPPVYFPPPSGFQDEKNKPEATAVKPAPPPVVTLREYPNPNEP 415
P S F + P PPP P
Sbjct: 18 GSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVT 66
Score = 29.7 bits (66), Expect = 2.3
Identities = 15/70 (21%), Positives = 19/70 (27%), Gaps = 3/70 (4%)
Query: 334 PPSCPTPDYDTMSVTSH--TNNNKVDMASFKSFSAAPAPAKPPPVYFPPPSGFQDEKNKP 391
S P M + S T+ +A+ P PA PPP P D
Sbjct: 10 HSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPP-PAPAAGNPPDTVTGD 68
Query: 392 EATAVKPAPP 401
P
Sbjct: 69 SVLQRILRGP 78
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.3
Identities = 10/88 (11%), Positives = 27/88 (30%), Gaps = 23/88 (26%)
Query: 247 QARAEPRTLHNGGGGASLSSAI-------SEEIKRRSERLNSGKEFVKVETTKNNIEE-D 298
+ EP +I + ++ ++ + E K ++EE +
Sbjct: 79 RLTQEPE-------------SIRKWREEQRKRLQELDAASKVMEQEWR-EKAKKDLEEWN 124
Query: 299 SSYHLKLQTLMKEVKEAHNKMFPGSQEE 326
+++ + A +K F +
Sbjct: 125 QRQSEQVEKNKINNRIA-DKAFYQQPDA 151
>3tu3_B EXOU; type III secretion system, SPC infectious diseases,
structural genomics, center for struct genomics of
infectious diseases, csgid; 1.92A {Pseudomonas
aeruginosa} PDB: 4akx_B*
Length = 711
Score = 30.1 bits (66), Expect = 1.6
Identities = 13/85 (15%), Positives = 19/85 (22%)
Query: 339 TPDYDTMSVTSHTNNNKVDMASFKSFSAAPAPAKPPPVYFPPPSGFQDEKNKPEATAVKP 398
TP S S + P + T
Sbjct: 44 TPSQAAHKSASLRQEPSGQGLGVALKSTPGILSGKLPESVSDVRFSSPQGQGESRTLTDS 103
Query: 399 APPPVVTLREYPNPNEPKVPSKFKF 423
A P +TLR++ N S+
Sbjct: 104 AGPRQITLRQFENGVTELQLSRPPL 128
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 29.9 bits (67), Expect = 1.7
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 6/101 (5%)
Query: 321 PGSQEEKDKCSDSPPSCPTPDYDTMSVTSHTNNNKVDMASFKSFSAAPAPAKPPPVYFPP 380
+E + D+ P + + ++ K MA + A PP Y PP
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAY-PPQGYAPP 396
Query: 381 PSGFQDEKNKPEATAVKPAPPPVVTLREYPNPNEPKVPSKF 421
P G+ + P+ + PP + YP P + P
Sbjct: 397 PQGYPPQGYPPQGYPPQGYPP-----QGYPPPPQGAPPQGA 432
>3go9_A Insulinase family protease; IDP00573, structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
HET: MSE; 1.62A {Yersinia pestis}
Length = 492
Score = 29.4 bits (66), Expect = 2.4
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 362 KSFSAAPAPAKPPP-VYFPPPSGFQDEKNKPEATAVKPAPPPVVTLREYPNPNEP 415
K+FS P V P +P + + A ++L + P P
Sbjct: 231 KAFSELKGKRTAPAAVATLAP-----LPPEPVSLMNEQAAQDTLSL-MWDTPWHP 279
>1pfc_A IGG1 PFC' FC; immunoglobulin; 3.12A {Cavia porcellus} SCOP: b.1.1.2
Length = 113
Score = 27.7 bits (62), Expect = 2.8
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 362 KSFSAAPAPAKPPPVY-FPPPSGFQDEKNKPEATAV 396
++ S A P + P VY PPP +E +K + +
Sbjct: 3 RTISKAKGPPRIPEVYLLPPPR---NELSKKKVSLT 35
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 28.6 bits (64), Expect = 3.4
Identities = 11/53 (20%), Positives = 13/53 (24%), Gaps = 7/53 (13%)
Query: 365 SAAPAPAKPPPVYFPPPSGFQDEKNKPEATAVKPAPPPVVTLREYPNPNEPKV 417
P P AT P+P + YP P P V
Sbjct: 165 KLVQLKQTGKITESRPTPA-------PTATPTAPSPLQATSGPSYPRPVIPPV 210
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 29.0 bits (65), Expect = 3.4
Identities = 5/69 (7%), Positives = 20/69 (28%), Gaps = 6/69 (8%)
Query: 40 DQIIRINGFPIEDATHSEVLQLIHSQNIISLKVRSVGMIPTKERDKSVTWKFVDTNKSNL 99
+ ++ + P + + ++ I+ + + + + +
Sbjct: 431 ETLVLMKHLPYMPILRRDRSPEMTAREIMH-PIEGEPHLFPDSEPQHIKGILEKFPNRLV 489
Query: 100 NQNERFPVV 108
FPV+
Sbjct: 490 -----FPVI 493
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 28.4 bits (63), Expect = 3.5
Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 4/80 (5%)
Query: 320 FPGSQEEKDKCSDSPPSC---PTPDYDTMSVTSHTNNNKVDMASFKSFSAAPAPAKPPPV 376
F Q + + + + Y S + + + PP V
Sbjct: 65 FSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKV 124
Query: 377 YFPPPSGFQDEKNKPEATAV 396
PS + NK +AT V
Sbjct: 125 SLFEPSK-AEIANKQKATLV 143
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 29.1 bits (65), Expect = 4.0
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 6 LGFSIR-GGREHTTGVFVSNVEPKSEAERSGLLIGDQIIR 44
L F+IR GGR GV + S A G G +
Sbjct: 657 LRFAIREGGRTVGAGVVAKVLSGASGAAGGGGSGGGGSMS 696
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 28.7 bits (62), Expect = 4.1
Identities = 13/87 (14%), Positives = 20/87 (22%), Gaps = 6/87 (6%)
Query: 340 PDYDTMSVTSHTNNNKVDMASFKSFSAAPAPAKPPPVYFPPPSGF------QDEKNKPEA 393
P+ + N K P +++ + K KP
Sbjct: 394 PNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTP 453
Query: 394 TAVKPAPPPVVTLREYPNPNEPKVPSK 420
AP E P P P+
Sbjct: 454 PVKPTAPTKPTYETEKPLKPAPVAPNY 480
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A*
3pyz_A* 3qcz_A*
Length = 437
Score = 28.3 bits (64), Expect = 5.1
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 43 IRINGFPIEDATHSEVLQLI 62
+RI G + +A HS I
Sbjct: 96 VRIQGQELSEAEHSHSFAQI 115
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 27.5 bits (61), Expect = 6.3
Identities = 7/55 (12%), Positives = 14/55 (25%)
Query: 358 MASFKSFSAAPAPAKPPPVYFPPPSGFQDEKNKPEATAVKPAPPPVVTLREYPNP 412
M S + + P + P G+ + + AP +
Sbjct: 1 MGSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSG 55
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 27.9 bits (63), Expect = 6.6
Identities = 7/25 (28%), Positives = 8/25 (32%)
Query: 353 NNKVDMASFKSFSAAPAPAKPPPVY 377
F F+A P P P Y
Sbjct: 290 QGSDLRPQFHQFTAVPHPNVKPMAY 314
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase,
ATP-binding, folate biosynthesis, ligase,
multifunctional enzyme; HET: KCX PD8 ADP; 1.82A
{Escherichia coli} PDB: 1w7k_A*
Length = 422
Score = 27.8 bits (63), Expect = 6.7
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 43 IRINGFPIEDATHSEVLQLI 62
+R+ G + ++ H+ I
Sbjct: 93 VRVQGQELPESAHTASFAEI 112
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 7.6
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 355 KVDMASFKSFSAAPAPA 371
K+ AS K ++ APA
Sbjct: 24 KLQ-ASLKLYADDSAPA 39
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 242
Score = 27.6 bits (62), Expect = 7.9
Identities = 5/20 (25%), Positives = 6/20 (30%)
Query: 363 SFSAAPAPAKPPPVYFPPPS 382
+ A P P F P
Sbjct: 122 TDKQLDADVSPKPTIFLPSI 141
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 27.6 bits (61), Expect = 8.0
Identities = 14/55 (25%), Positives = 20/55 (36%)
Query: 340 PDYDTMSVTSHTNNNKVDMASFKSFSAAPAPAKPPPVYFPPPSGFQDEKNKPEAT 394
P D +S+ S + VD++SF F AP P + P T
Sbjct: 4 PLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGT 58
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 27.7 bits (62), Expect = 8.8
Identities = 7/25 (28%), Positives = 8/25 (32%)
Query: 353 NNKVDMASFKSFSAAPAPAKPPPVY 377
F F+A P P P Y
Sbjct: 443 QGSDLRPQFHQFTAVPHPNVKPMAY 467
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 27.5 bits (60), Expect = 8.9
Identities = 10/64 (15%), Positives = 18/64 (28%)
Query: 343 DTMSVTSHTNNNKVDMASFKSFSAAPAPAKPPPVYFPPPSGFQDEKNKPEATAVKPAPPP 402
+S ++ + +F S A P P + + E V P+
Sbjct: 281 SEISFNMASSKSGNIWFAFNSNINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYEN 340
Query: 403 VVTL 406
T
Sbjct: 341 EPTP 344
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.387
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,297,190
Number of extensions: 364734
Number of successful extensions: 1518
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1232
Number of HSP's successfully gapped: 415
Length of query: 433
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 337
Effective length of database: 4,021,377
Effective search space: 1355204049
Effective search space used: 1355204049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)