BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12298
(68 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24270|CAC1D_DROME Voltage-dependent calcium channel type D subunit alpha-1
OS=Drosophila melanogaster GN=Ca-alpha1D PE=1 SV=2
Length = 2516
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 27 RRAGKPPPDRPQRALFCLTLKNPLRKMCIDVVEWK 61
+R GKP PDRPQRALFCL++KNPLR +CI +VEWK
Sbjct: 581 QRRGKPQPDRPQRALFCLSVKNPLRALCIRIVEWK 615
>sp|Q25452|CAC1M_MUSDO Muscle calcium channel subunit alpha-1 OS=Musca domestica PE=2
SV=1
Length = 1687
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/40 (67%), Positives = 30/40 (75%)
Query: 22 PKRPIRRAGKPPPDRPQRALFCLTLKNPLRKMCIDVVEWK 61
PKR RR GK DRP+RALFCLTLKNPLR CI +V+ K
Sbjct: 22 PKRTQRRGGKQQLDRPERALFCLTLKNPLRIFCIKIVDSK 61
>sp|Q13698|CAC1S_HUMAN Voltage-dependent L-type calcium channel subunit alpha-1S OS=Homo
sapiens GN=CACNA1S PE=1 SV=4
Length = 1873
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Query: 16 IKPQPPPKRPIRRA--GKPPPD---RPQRALFCLTLKNPLRKMCIDVVEWK 61
++P P +R+ KP P+ RP RALFCLTL+NPLRK CI +VEWK
Sbjct: 1 MEPSSPQDEGLRKKQPKKPVPEILPRPPRALFCLTLENPLRKACISIVEWK 51
>sp|P07293|CAC1S_RABIT Voltage-dependent L-type calcium channel subunit alpha-1S
OS=Oryctolagus cuniculus GN=CACNA1S PE=1 SV=1
Length = 1873
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Query: 16 IKPQPPPKRPIRRA--GKPPPD---RPQRALFCLTLKNPLRKMCIDVVEWK 61
++P P +R+ KP P+ RP RALFCLTL+NPLRK CI +VEWK
Sbjct: 1 MEPSSPQDEGLRKKQPKKPLPEVLPRPPRALFCLTLQNPLRKACISIVEWK 51
>sp|Q02789|CAC1S_MOUSE Voltage-dependent L-type calcium channel subunit alpha-1S OS=Mus
musculus GN=Cacna1s PE=1 SV=2
Length = 1880
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Query: 16 IKPQPPPKRPIRRA--GKPPPD---RPQRALFCLTLKNPLRKMCIDVVEWK 61
++P P +R+ KP P+ RP RALFCLTL+NPLRK CI +VEWK
Sbjct: 1 MEPPSPQDEGLRKKQPKKPVPEILPRPPRALFCLTLQNPLRKACISIVEWK 51
>sp|Q99244|CAC1D_MESAU Voltage-dependent L-type calcium channel subunit alpha-1D
OS=Mesocricetus auratus GN=CACNA1D PE=2 SV=2
Length = 1610
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 27 RRAGKPPPDRPQRALFCLTLKNPLRKMCIDVVEWK 61
++ G RP RALFCL+L NP+R+ CI +VEWK
Sbjct: 91 KKQGNSSNSRPARALFCLSLNNPIRRACISIVEWK 125
>sp|O73700|CAC1D_CHICK Voltage-dependent L-type calcium channel subunit alpha-1D OS=Gallus
gallus GN=CACNA1D PE=2 SV=1
Length = 2190
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 6 NTATADQLGVI---KPQPPPKRPIRRAGKPPPDRPQRALFCLTLKNPLRKMCIDVVEWK 61
NT TA +G + K Q K ++ G RP RALFCL+L NP+R+ CI +VEWK
Sbjct: 65 NTTTAQPVGSLSQRKRQQYAKS--KKQGNTSNSRPPRALFCLSLNNPIRRACISLVEWK 121
>sp|Q13936|CAC1C_HUMAN Voltage-dependent L-type calcium channel subunit alpha-1C OS=Homo
sapiens GN=CACNA1C PE=1 SV=4
Length = 2221
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 27 RRAGKPPPDRPQRALFCLTLKNPLRKMCIDVVEWK 61
++ G RP RAL CLTLKNP+R+ CI +VEWK
Sbjct: 90 KKQGSTTATRPPRALLCLTLKNPIRRACISIVEWK 124
>sp|Q99246|CAC1D_MOUSE Voltage-dependent L-type calcium channel subunit alpha-1D OS=Mus
musculus GN=Cacna1d PE=1 SV=3
Length = 2179
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 27 RRAGKPPPDRPQRALFCLTLKNPLRKMCIDVVEWK 61
++ G RP RALFCL+L NP+R+ CI +VEWK
Sbjct: 92 KKQGNSSNSRPARALFCLSLNNPIRRACISIVEWK 126
>sp|Q01668|CAC1D_HUMAN Voltage-dependent L-type calcium channel subunit alpha-1D OS=Homo
sapiens GN=CACNA1D PE=1 SV=2
Length = 2161
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 27 RRAGKPPPDRPQRALFCLTLKNPLRKMCIDVVEWK 61
++ G RP RALFCL+L NP+R+ CI +VEWK
Sbjct: 92 KKQGNSSNSRPARALFCLSLNNPIRRACISIVEWK 126
>sp|P22002|CAC1C_RAT Voltage-dependent L-type calcium channel subunit alpha-1C OS=Rattus
norvegicus GN=Cacna1c PE=1 SV=1
Length = 2169
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 27 RRAGKPPPDRPQRALFCLTLKNPLRKMCIDVVEWK 61
++ G RP RAL CLTLKNP+R+ CI +VEWK
Sbjct: 120 KKQGGTTATRPPRALLCLTLKNPIRRACISIVEWK 154
>sp|Q01815|CAC1C_MOUSE Voltage-dependent L-type calcium channel subunit alpha-1C OS=Mus
musculus GN=Cacna1c PE=1 SV=1
Length = 2139
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 27 RRAGKPPPDRPQRALFCLTLKNPLRKMCIDVVEWK 61
++ G RP RAL CLTLKNP+R+ CI +VEWK
Sbjct: 90 KKQGGTTATRPPRALLCLTLKNPIRRACISIVEWK 124
>sp|P15381|CAC1C_RABIT Voltage-dependent L-type calcium channel subunit alpha-1C
OS=Oryctolagus cuniculus GN=CACNA1C PE=1 SV=1
Length = 2171
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 27 RRAGKPPPDRPQRALFCLTLKNPLRKMCIDVVEWK 61
++ G RP RAL CLTLKNP+R+ CI +VEWK
Sbjct: 120 KKQGSTTATRPPRALLCLTLKNPIRRACISIVEWK 154
>sp|P27732|CAC1D_RAT Voltage-dependent L-type calcium channel subunit alpha-1D OS=Rattus
norvegicus GN=Cacna1d PE=1 SV=2
Length = 2203
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 27 RRAGKPPPDRPQRALFCLTLKNPLRKMCIDVVEWK 61
++ G RP RALFCL+L NP+R+ CI +V+WK
Sbjct: 92 KKQGNSSNSRPARALFCLSLNNPIRRACISIVDWK 126
>sp|O60840|CAC1F_HUMAN Voltage-dependent L-type calcium channel subunit alpha-1F OS=Homo
sapiens GN=CACNA1F PE=1 SV=2
Length = 1977
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/26 (73%), Positives = 21/26 (80%)
Query: 36 RPQRALFCLTLKNPLRKMCIDVVEWK 61
R RALFCLTL NPLR+ CI +VEWK
Sbjct: 67 RSPRALFCLTLANPLRRSCISIVEWK 92
>sp|P22316|CAC1S_CYPCA Dihydropyridine-sensitive L-type skeletal muscle calcium channel
subunit alpha-1 OS=Cyprinus carpio PE=2 SV=1
Length = 1852
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 36 RPQRALFCLTLKNPLRKMCIDVVEWK 61
RP R+LF TLKNP RK CI++VEWK
Sbjct: 45 RPPRSLFFFTLKNPFRKTCINIVEWK 70
>sp|Q9JIS7|CAC1F_MOUSE Voltage-dependent L-type calcium channel subunit alpha-1F OS=Mus
musculus GN=Cacna1f PE=1 SV=1
Length = 1985
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 36 RPQRALFCLTLKNPLRKMCIDVVEWK 61
R RALFCLTL NP+R+ CI +VEWK
Sbjct: 67 RSPRALFCLTLTNPIRRSCISIVEWK 92
>sp|O57483|CAC1S_LITCT Voltage-dependent L-type calcium channel subunit alpha-1S
OS=Lithobates catesbeiana PE=2 SV=1
Length = 1688
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/23 (73%), Positives = 20/23 (86%)
Query: 39 RALFCLTLKNPLRKMCIDVVEWK 61
RALFCL L+NP RK CI++VEWK
Sbjct: 29 RALFCLGLQNPFRKFCINIVEWK 51
>sp|Q00975|CAC1B_HUMAN Voltage-dependent N-type calcium channel subunit alpha-1B OS=Homo
sapiens GN=CACNA1B PE=1 SV=1
Length = 2339
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 26 IRRAGKPPPDRPQRALFCLTLKNPLRKMCIDVVEWKY 62
+ R+G P P P ++FCL+ N LR+ C +V +Y
Sbjct: 1116 VMRSG-PRPIVPYSSMFCLSPTNLLRRFCHYIVTMRY 1151
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,990,526
Number of Sequences: 539616
Number of extensions: 1134158
Number of successful extensions: 6245
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 6103
Number of HSP's gapped (non-prelim): 138
length of query: 68
length of database: 191,569,459
effective HSP length: 40
effective length of query: 28
effective length of database: 169,984,819
effective search space: 4759574932
effective search space used: 4759574932
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)