Query psy12298
Match_columns 68
No_of_seqs 99 out of 101
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 15:22:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4r_A PARP14 protein; WWE dom 40.6 4.5 0.00015 25.9 -0.5 15 53-67 22-43 (99)
2 2lhj_A High mobility group pro 36.7 14 0.00048 21.7 1.3 20 27-46 16-35 (97)
3 1wgf_A Upstream binding factor 36.7 11 0.00037 22.0 0.7 20 27-46 14-33 (90)
4 3qw3_A Orotidine-5-phosphate d 24.3 32 0.0011 24.1 1.5 22 38-59 12-39 (255)
5 1ug8_A Poly(A)-specific ribonu 21.4 33 0.0011 21.4 1.0 16 48-63 39-54 (87)
6 4efo_A Serine/threonine-protei 17.7 70 0.0024 19.8 2.0 16 36-51 78-93 (94)
7 3rvy_A ION transport protein; 16.2 19 0.00065 24.1 -1.0 18 48-66 17-34 (285)
8 1cg7_A Protein (NON histone pr 16.0 32 0.0011 20.0 0.1 17 30-46 17-33 (93)
9 2gcl_A Hypothetical 63.0 kDa p 15.9 27 0.00093 25.1 -0.3 15 39-53 78-92 (261)
10 2hw0_A Replicase; alpha+beta, 15.2 45 0.0015 21.1 0.6 11 41-51 15-25 (115)
No 1
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=40.59 E-value=4.5 Score=25.95 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=10.9
Q ss_pred HhhHhhhccC-------CCCCC
Q psy12298 53 MCIDVVEWKY-------PLSSK 67 (68)
Q Consensus 53 ~ci~IVEWky-------PFey~ 67 (68)
++-.+|||.| |||-.
T Consensus 22 l~s~lVeWqY~d~~~~~~FDk~ 43 (99)
T 1x4r_A 22 YISTYVEWQYIDKNITQCFDKM 43 (99)
T ss_dssp HHHTSCEEEEECSSCEEECCTT
T ss_pred HHHHhhEEEEeCCCeEeechHH
Confidence 3456899999 77743
No 2
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=36.74 E-value=14 Score=21.71 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCceeEEeec
Q psy12298 27 RRAGKPPPDRPQRALFCLTL 46 (68)
Q Consensus 27 ~~~g~~~~~rp~RSLFcltl 46 (68)
+......+-||.-+.++|..
T Consensus 16 ~~kdp~~pKrP~say~lF~~ 35 (97)
T 2lhj_A 16 AKKDPNAPKRALSSYMFFAK 35 (97)
T ss_dssp TTSCCCCCCCCCCSSTHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHH
Confidence 33344445566666666553
No 3
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=36.69 E-value=11 Score=22.00 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCceeEEeec
Q psy12298 27 RRAGKPPPDRPQRALFCLTL 46 (68)
Q Consensus 27 ~~~g~~~~~rp~RSLFcltl 46 (68)
+......+-||.-+.|+|..
T Consensus 14 ~~kdp~~pKrP~say~lF~~ 33 (90)
T 1wgf_A 14 GKGGSEKPKRPVSAMFIFSE 33 (90)
T ss_dssp CSSCCCCCCCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHH
Confidence 33344555567666666653
No 4
>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}
Probab=24.34 E-value=32 Score=24.08 Aligned_cols=22 Identities=27% Similarity=0.634 Sum_probs=18.6
Q ss_pred CceeEEeeccChH------HHHhhHhhh
Q psy12298 38 QRALFCLTLKNPL------RKMCIDVVE 59 (68)
Q Consensus 38 ~RSLFcltl~NPi------Rk~ci~IVE 59 (68)
.++..|++||-+. +..|..|||
T Consensus 12 ~~~~LcVgLD~~~~~~~~~~~~~~~lv~ 39 (255)
T 3qw3_A 12 KRSLLCVGLDPRAKTAAAAVEECKRLIE 39 (255)
T ss_dssp TTCCEEEEECCCCSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCchhcchHHHHHHHHHH
Confidence 4678999999775 788999998
No 5
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=21.36 E-value=33 Score=21.42 Aligned_cols=16 Identities=38% Similarity=0.825 Sum_probs=14.0
Q ss_pred ChHHHHhhHhhhccCC
Q psy12298 48 NPLRKMCIDVVEWKYP 63 (68)
Q Consensus 48 NPiRk~ci~IVEWkyP 63 (68)
--+||+.-.-++|+||
T Consensus 39 ~f~RkLIYQ~~~~kfp 54 (87)
T 1ug8_A 39 GFQRKLIYQTLSWKYP 54 (87)
T ss_dssp SHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3589999999999987
No 6
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=17.74 E-value=70 Score=19.82 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=10.5
Q ss_pred CCCceeEEeeccChHH
Q psy12298 36 RPQRALFCLTLKNPLR 51 (68)
Q Consensus 36 rp~RSLFcltl~NPiR 51 (68)
-+.+-||.|+..||-|
T Consensus 78 t~~~Pl~L~s~~~~~~ 93 (94)
T 4efo_A 78 TEENPIFVVSLERPHR 93 (94)
T ss_dssp BTTBCEEEEECCC---
T ss_pred CCCCCEEEEecCCcCC
Confidence 3456699999999977
No 7
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=16.21 E-value=19 Score=24.09 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=13.6
Q ss_pred ChHHHHhhHhhhccCCCCC
Q psy12298 48 NPLRKMCIDVVEWKYPLSS 66 (68)
Q Consensus 48 NPiRk~ci~IVEWkyPFey 66 (68)
|.+|+.|.+|+|.++ |++
T Consensus 17 ~~~r~~~~~i~~~~~-f~~ 34 (285)
T 3rvy_A 17 SHMYLRITNIVESSF-FTK 34 (285)
T ss_dssp --CHHHHHHHHTSHH-HHH
T ss_pred hHHHHHHHHHHcCHH-HHH
Confidence 348999999999884 764
No 8
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=16.00 E-value=32 Score=19.97 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=9.1
Q ss_pred CCCCCCCCCceeEEeec
Q psy12298 30 GKPPPDRPQRALFCLTL 46 (68)
Q Consensus 30 g~~~~~rp~RSLFcltl 46 (68)
....+-||.-+.++|..
T Consensus 17 dp~~pKrP~saf~lF~~ 33 (93)
T 1cg7_A 17 DPNAPKRALSAYMFFAN 33 (93)
T ss_dssp CSSCCCSCCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHH
Confidence 44444566666555543
No 9
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A
Probab=15.86 E-value=27 Score=25.07 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.9
Q ss_pred ceeEEeeccChHHHH
Q psy12298 39 RALFCLTLKNPLRKM 53 (68)
Q Consensus 39 RSLFcltl~NPiRk~ 53 (68)
-.+||++|++|||..
T Consensus 78 ~~~~vi~ld~PirqG 92 (261)
T 2gcl_A 78 HHMMVMAIEPPLRQG 92 (261)
T ss_dssp EEEEEEEEEEEEEET
T ss_pred ceEEEEecCCCccCC
Confidence 378999999999875
No 10
>2hw0_A Replicase; alpha+beta, hydrolase, replication; NMR {Porcine circovirus 2}
Probab=15.17 E-value=45 Score=21.13 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=8.8
Q ss_pred eEEeeccChHH
Q psy12298 41 LFCLTLKNPLR 51 (68)
Q Consensus 41 LFcltl~NPiR 51 (68)
=||||+.||-=
T Consensus 15 ~WcFTlnn~~~ 25 (115)
T 2hw0_A 15 RWVFTLNNPSE 25 (115)
T ss_dssp CEEEEEESCCH
T ss_pred EEEEEecCCCc
Confidence 49999999743
Done!