Query psy12298
Match_columns 68
No_of_seqs 99 out of 101
Neff 2.7
Searched_HMMs 13730
Date Fri Aug 16 15:22:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12298.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12298hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ug8a_ d.68.7.1 (A:) Poly(A)- 24.9 12 0.00087 22.2 1.0 17 47-63 38-54 (87)
2 d1x58a1 a.4.1.1 (A:8-56) Hypot 17.4 16 0.0012 19.8 0.4 9 57-65 25-33 (49)
3 d2gcla1 b.55.1.10 (A:237-474) 14.8 14 0.001 24.0 -0.3 17 39-55 59-75 (238)
4 d2duya1 a.60.2.7 (A:11-75) Unc 14.0 38 0.0027 17.8 1.4 14 51-65 27-40 (65)
5 d2bi7a2 d.16.1.7 (A:248-316) U 13.7 12 0.00089 20.8 -0.8 10 55-65 32-41 (69)
6 d1lvaa4 a.4.5.35 (A:575-634) C 13.3 31 0.0022 18.7 0.9 11 50-60 31-41 (60)
7 d1i8ta2 d.16.1.7 (A:245-313) U 11.5 16 0.0012 20.2 -0.8 10 55-65 33-42 (69)
8 d2q8za1 c.1.2.3 (A:1-323) Prot 10.3 69 0.0051 21.2 2.2 11 50-60 83-93 (323)
9 d1vlya1 b.44.2.1 (A:244-325) H 10.3 54 0.004 17.8 1.3 10 38-47 2-11 (82)
10 d1wgfa_ a.21.1.1 (A:) Nucleola 10.1 41 0.003 17.8 0.7 14 34-47 21-34 (90)
No 1
>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.85 E-value=12 Score=22.19 Aligned_cols=17 Identities=35% Similarity=0.778 Sum_probs=14.6
Q ss_pred cChHHHHhhHhhhccCC
Q psy12298 47 KNPLRKMCIDVVEWKYP 63 (68)
Q Consensus 47 ~NPiRk~ci~IVEWkyP 63 (68)
.--+||+.-..++|+||
T Consensus 38 ngFqRKLIYQtl~~kfp 54 (87)
T d1ug8a_ 38 TGFQRKLIYQTLSWKYP 54 (87)
T ss_dssp CSHHHHHHHHHHHHHSS
T ss_pred cHHHHHHHHHHHHHhCC
Confidence 34689999999999986
No 2
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.42 E-value=16 Score=19.82 Aligned_cols=9 Identities=22% Similarity=1.054 Sum_probs=7.0
Q ss_pred hhhccCCCC
Q psy12298 57 VVEWKYPLS 65 (68)
Q Consensus 57 IVEWkyPFe 65 (68)
.|=|.|||.
T Consensus 25 sILWs~PF~ 33 (49)
T d1x58a1 25 SILWSFPFQ 33 (49)
T ss_dssp HHHHHSCCC
T ss_pred hhhhccCCC
Confidence 456999996
No 3
>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.82 E-value=14 Score=23.97 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=13.9
Q ss_pred ceeEEeeccChHHHHhh
Q psy12298 39 RALFCLTLKNPLRKMCI 55 (68)
Q Consensus 39 RSLFcltl~NPiRk~ci 55 (68)
-.+|++.|+||||..-.
T Consensus 59 ~~~~~~~L~ppi~~G~t 75 (238)
T d2gcla1 59 HHMMVMAIEPPLRQGQT 75 (238)
T ss_dssp EEEEEEEEEEEEEETTE
T ss_pred eEEEEEEecChhhcCCc
Confidence 46899999999997644
No 4
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]}
Probab=14.02 E-value=38 Score=17.75 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=11.3
Q ss_pred HHHhhHhhhccCCCC
Q psy12298 51 RKMCIDVVEWKYPLS 65 (68)
Q Consensus 51 Rk~ci~IVEWkyPFe 65 (68)
.+.+..||+++ ||.
T Consensus 27 ~~~A~~Iv~~R-~f~ 40 (65)
T d2duya1 27 PVLARRIVEGR-PYA 40 (65)
T ss_dssp HHHHHHHHHTC-CCS
T ss_pred HHHHHHHHHcC-CCC
Confidence 46788999999 875
No 5
>d2bi7a2 d.16.1.7 (A:248-316) UDP-galactopyranose mutase {Klebsiella pneumoniae [TaxId: 573]}
Probab=13.68 E-value=12 Score=20.83 Aligned_cols=10 Identities=40% Similarity=0.674 Sum_probs=7.2
Q ss_pred hHhhhccCCCC
Q psy12298 55 IDVVEWKYPLS 65 (68)
Q Consensus 55 i~IVEWkyPFe 65 (68)
-+|+|||+ |.
T Consensus 32 TRi~E~Kh-~~ 41 (69)
T d2bi7a2 32 TRITEHKY-FS 41 (69)
T ss_dssp SEEEEGGG-GC
T ss_pred EEeEeeee-cc
Confidence 36889997 53
No 6
>d1lvaa4 a.4.5.35 (A:575-634) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=13.28 E-value=31 Score=18.66 Aligned_cols=11 Identities=27% Similarity=0.576 Sum_probs=9.2
Q ss_pred HHHHhhHhhhc
Q psy12298 50 LRKMCIDVVEW 60 (68)
Q Consensus 50 iRk~ci~IVEW 60 (68)
=||++|-+.|+
T Consensus 31 sRK~ai~lLE~ 41 (60)
T d1lvaa4 31 SRKYVLPLLEY 41 (60)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 38999999885
No 7
>d1i8ta2 d.16.1.7 (A:245-313) UDP-galactopyranose mutase {Escherichia coli [TaxId: 562]}
Probab=11.47 E-value=16 Score=20.18 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=6.9
Q ss_pred hHhhhccCCCC
Q psy12298 55 IDVVEWKYPLS 65 (68)
Q Consensus 55 i~IVEWkyPFe 65 (68)
-+|+|||+ |.
T Consensus 33 TRi~E~Kh-~~ 42 (69)
T d1i8ta2 33 TRIIEHKH-FD 42 (69)
T ss_dssp SEEEEGGG-GS
T ss_pred eEEeeeec-cC
Confidence 35888887 53
No 8
>d2q8za1 c.1.2.3 (A:1-323) Protozoan orotidine monophosphate decarboxylase {Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]}
Probab=10.35 E-value=69 Score=21.24 Aligned_cols=11 Identities=9% Similarity=0.516 Sum_probs=8.8
Q ss_pred HHHHhhHhhhc
Q psy12298 50 LRKMCIDVVEW 60 (68)
Q Consensus 50 iRk~ci~IVEW 60 (68)
|+.+|..|||-
T Consensus 83 ~~~f~~~iida 93 (323)
T d2q8za1 83 FNHFCFYIINE 93 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67888888883
No 9
>d1vlya1 b.44.2.1 (A:244-325) Hypothetical protein YgfZ, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.32 E-value=54 Score=17.81 Aligned_cols=10 Identities=40% Similarity=0.501 Sum_probs=7.8
Q ss_pred CceeEEeecc
Q psy12298 38 QRALFCLTLK 47 (68)
Q Consensus 38 ~RSLFcltl~ 47 (68)
+|+||+|+.+
T Consensus 2 KRamy~l~g~ 11 (82)
T d1vlya1 2 KRALWLLAGS 11 (82)
T ss_dssp CEEEEEEEEC
T ss_pred ccEEEEEEec
Confidence 6899999753
No 10
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.09 E-value=41 Score=17.80 Aligned_cols=14 Identities=36% Similarity=0.755 Sum_probs=6.6
Q ss_pred CCCCCceeEEeecc
Q psy12298 34 PDRPQRALFCLTLK 47 (68)
Q Consensus 34 ~~rp~RSLFcltl~ 47 (68)
+-||..+.++|..+
T Consensus 21 PKrP~say~lF~~e 34 (90)
T d1wgfa_ 21 PKRPVSAMFIFSEE 34 (90)
T ss_dssp CCCCCCHHHHHHHH
T ss_pred CCCCCcHHHHHHHH
Confidence 33555555555443
Done!