RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12298
         (68 letters)



>gnl|CDD|235309 PRK04596, minC, septum formation inhibitor; Reviewed.
          Length = 248

 Score = 28.0 bits (62), Expect = 0.27
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 8   ATADQLGVIKPQPPPKRPIRRAGKPPPDRPQ 38
           A  ++  V  P PPP  P R    PP  RP 
Sbjct: 110 AQYERAAVSPPPPPPPPPARAEPAPPVARPA 140


>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II
          protein Lhcb4; Provisional.
          Length = 286

 Score = 25.9 bits (57), Expect = 1.7
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 14 GVIKPQPPPKRPIRRAGKPPPDRP 37
          G  K +   K+  +++ K   DRP
Sbjct: 30 GFGKKKKAAKKAKKKSSKVGADRP 53


>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
           complex aNOP56 subunit; Provisional.
          Length = 414

 Score = 25.7 bits (57), Expect = 1.9
 Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 3/27 (11%)

Query: 16  IK---PQPPPKRPIRRAGKPPPDRPQR 39
           IK   P+PP K+   +  +    + +R
Sbjct: 375 IKEKYPKPPKKKREEKKPQKRKKKKKR 401


>gnl|CDD|179538 PRK03100, PRK03100, sec-independent translocase; Provisional.
          Length = 136

 Score = 25.4 bits (56), Expect = 2.1
 Identities = 9/34 (26%), Positives = 11/34 (32%)

Query: 2   SVTNNTATADQLGVIKPQPPPKRPIRRAGKPPPD 35
              N   T        P PP   P+    +PP D
Sbjct: 99  QTGNGRPTPSSPDAAGPAPPDATPLAPGERPPFD 132


>gnl|CDD|240247 PTZ00055, PTZ00055, glutathione synthetase; Provisional.
          Length = 619

 Score = 25.5 bits (56), Expect = 2.2
 Identities = 7/18 (38%), Positives = 9/18 (50%), Gaps = 3/18 (16%)

Query: 31  KPPPDRPQRALFCLTLKN 48
            PP    Q A+F   LK+
Sbjct: 543 FPPS---QPAVFVRNLKS 557


>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
          Length = 463

 Score = 25.1 bits (54), Expect = 3.7
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 6   NTATADQLGVIKPQPPPKRPIRRAGKPPPDRPQR 39
           +   A++       PPPK+  +    PP +R +R
Sbjct: 203 SAPVAEKPKAPSSPPPPKQSAKEPQLPPKERERR 236


>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
           homolog [Translation, ribosomal structure and
           biogenesis].
          Length = 395

 Score = 24.7 bits (54), Expect = 3.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 18  PQPPPKRPIRRAGKPPPDRPQRA 40
           P+PP K    R  K  P R +R 
Sbjct: 358 PKPPTKAKPERDKKERPGRYRRK 380


>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
          Length = 475

 Score = 24.5 bits (53), Expect = 4.5
 Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 2/23 (8%)

Query: 17 KPQPPPKRPIRRAGKPPPDRPQR 39
             P    P  RA KP  D+P+R
Sbjct: 43 AAAPAAAAP--RAEKPKKDKPRR 63


>gnl|CDD|172376 PRK13855, PRK13855, type IV secretion system protein VirB10;
           Provisional.
          Length = 376

 Score = 24.1 bits (52), Expect = 6.4
 Identities = 5/25 (20%), Positives = 10/25 (40%)

Query: 16  IKPQPPPKRPIRRAGKPPPDRPQRA 40
           + P PP  +   +   PP  + +  
Sbjct: 80  VPPDPPAAQEAVQPTAPPSAQSEPE 104


>gnl|CDD|235927 PRK07078, PRK07078, hypothetical protein; Validated.
          Length = 759

 Score = 24.0 bits (52), Expect = 7.1
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 4/31 (12%)

Query: 10  ADQLGVIKPQPPPKRPIRRAGKPPPDRPQRA 40
           A+ LG  +  P  KR  +++  PP D    A
Sbjct: 108 AELLGRARATPVRKR--KKS--PPVDDLGPA 134


>gnl|CDD|236063 PRK07586, PRK07586, hypothetical protein; Validated.
          Length = 514

 Score = 23.6 bits (52), Expect = 8.8
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 6/34 (17%)

Query: 8   ATADQLGVIKPQPPPKRPIRRAGKPPPDRPQRAL 41
           A AD LG     PP   P R      P  P  AL
Sbjct: 310 ALADALGAKPAAPPLAAPAR------PPLPTGAL 337


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.135    0.427 

Gapped
Lambda     K      H
   0.267   0.0604    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,502,168
Number of extensions: 258480
Number of successful extensions: 362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 19
Length of query: 68
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 29
Effective length of database: 9,207,796
Effective search space: 267026084
Effective search space used: 267026084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)