RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12298
         (68 letters)



>3loy_A Copper amine oxidase; TPQ, oxidoreductase; HET: TPQ TLA; 2.00A
          {Pichia angusta}
          Length = 633

 Score = 24.8 bits (53), Expect = 2.4
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 6/52 (11%)

Query: 16 IKPQPPPKRPI------RRAGKPPPDRPQRALFCLTLKNPLRKMCIDVVEWK 61
          I    PPK+ +       R GKP P   +       +     K  ++V    
Sbjct: 34 IDRLDPPKKDMIRYLEAERTGKPLPHISRMTYVYYYIGLDFYKALVNVSYGH 85


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.0 bits (54), Expect = 2.5
 Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 9/44 (20%)

Query: 8   ATADQLGVIKPQPPPKRP--IR-------RAGKPPPDRPQRALF 42
           A A +L         K    I+        A +P   +   ALF
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146


>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta
          sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo
          sapiens} PDB: 3ngo_A 3ngn_A
          Length = 398

 Score = 24.2 bits (51), Expect = 4.9
 Identities = 5/30 (16%), Positives = 10/30 (33%)

Query: 16 IKPQPPPKRPIRRAGKPPPDRPQRALFCLT 45
          + P+  P RP     +     P  +   + 
Sbjct: 7  VHPEQLPPRPWITLKERDQILPSASFTVMC 36


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.135    0.427 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,064,780
Number of extensions: 50756
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 14
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)