BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12301
(632 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FSU|A Chain A, 4-Sulfatase (Human)
Length = 492
Score = 267 bits (682), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 155/408 (37%), Positives = 226/408 (55%), Gaps = 33/408 (8%)
Query: 92 GWNDLSFHGSNEIPTPNIDALAYNGIILNNMYAQPVCTPSRASLMTGKYPIHTGMQGPPI 151
GWND+ FHGS I TP++DALA G++L+N Y QP+ TPSR+ L+TG+Y I TG+Q I
Sbjct: 15 GWNDVGFHGS-RIRTPHLDALAAGGVLLDNYYTQPLXTPSRSQLLTGRYQIRTGLQHQII 73
Query: 152 WGAEPRGVPLTERFLPEYLRELGYSTKAIGKWHLGFFRREYTPLYRGFESHFGYLNGVIS 211
W +P VPL E+ LP+ L+E GY+T +GKWHLG +R+E P RGF+++FGYL G
Sbjct: 74 WPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSED 133
Query: 212 YYDH---ILSDQYSRTVELNGHDMRRNLSTAWDTVGEYATDLFTKEAVQLIEDQPVDKPX 268
YY H L D + V D R A Y+T++FTK A+ LI + P +KP
Sbjct: 134 YYSHERCTLID--ALNVTRCALDFRDGEEVATGYKNMYSTNIFTKRAIALITNHPPEKP- 190
Query: 269 XXXXXXXXXXXXXXXXXXEAPQETINQFQYITDPNRRTYAAMVKKLDDSVGTVISALQRK 328
+ P+E + + +I D NR YA MV +D++VG V +AL+
Sbjct: 191 ----LFLYLALQSVHEPLQVPEEYLKPYDFIQDKNRHHYAGMVSLMDEAVGNVTAALKSS 246
Query: 329 GMLENSIIIFMSDNGAPTVEYRETSNYRNWGSNYPYRGVKNTLWEGGVKVPAILWSPQIQ 388
G+ N++ IF +DNG T+ G+N+P RG K +LWEGGV+ + SP ++
Sbjct: 247 GLWNNTVFIFSTDNGGQTLAG---------GNNWPLRGRKWSLWEGGVRGVGFVASPLLK 297
Query: 389 QNPRVSLQMMHISDWLPTLYTAAGGDTSRLPLNIDGLDQWSSLLLNTPSRRNSNIDGLDQ 448
Q + +++HISDWLPTL A G T+ +DG D W ++ +PS R + +D
Sbjct: 298 QKGVKNRELIHISDWLPTLVKLARGHTNGTK-PLDGFDVWKTISEGSPSPRIELLHNID- 355
Query: 449 WSSLLLNTPSRRNSVLINIDEKKR----------TAAVRLDSWKLVLG 486
+ + ++P RNS+ D+ AA+R +WKL+ G
Sbjct: 356 -PNFVDSSPCPRNSMAPAKDDSSLPEYSAFNTSVHAAIRHGNWKLLTG 402
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 15 YATDLFTKEAVQLIEDQPVDKPXXXXXXXXXXXXXXXXXXXEAPQETINQFQYITDPNRR 74
Y+T++FTK A+ LI + P +KP + P+E + + +I D NR
Sbjct: 169 YSTNIFTKRAIALITNHPPEKP-----LFLYLALQSVHEPLQVPEEYLKPYDFIQDKNRH 223
Query: 75 TYAA 78
YA
Sbjct: 224 HYAG 227
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 568 YLFNLGNDPCEQNNIASSRPDISSQLYELLKYHRRTLVPQSHEQPDLVQADPKRFNDTWS 627
+LF++ DP E+++++ P I ++L L+++ + VP D + DPK W
Sbjct: 432 WLFDIDRDPEERHDLSREYPHIVTKLLSRLQFYHKHSVPVYFPAQD-PRCDPKA-TGVWG 489
Query: 628 PWI 630
PW+
Sbjct: 490 PWM 492
>pdb|4FDI|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDI|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDJ|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
pdb|4FDJ|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
Length = 502
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 114/368 (30%), Positives = 163/368 (44%), Gaps = 63/368 (17%)
Query: 92 GWNDLSFHGSNEIPTPNIDALAYNGIILNNMY-AQPVCTPSRASLMTGKYPIHTGMQGPP 150
GW DL +G TPN+D +A G++ N Y A P+ +PSRA+L+TG+ PI G
Sbjct: 16 GWGDLGVYGEPSRETPNLDRMAAEGLLFPNFYSANPLXSPSRAALLTGRLPIRNGFY--- 72
Query: 151 IWGAEPR----------GVPLTERFLPEYLRELGYSTKAIGKWHLGFFRREYTPLYRGFE 200
A R G+P +E+ LPE L++ GY +K +GKWHLG R ++ PL GF+
Sbjct: 73 TTNAHARNAYTPQEIVGGIPDSEQLLPELLKKAGYVSKIVGKWHLG-HRPQFHPLKHGFD 131
Query: 201 SHFGYLNGVISYYDHILSDQYSRTVELNGHDMRRNLST--AWDTVGEY------------ 246
FG N YD + R N+ W+ VG Y
Sbjct: 132 EWFGSPNCHFGPYD---------------NKARPNIPVYRDWEMVGRYYEEFPINLKTGE 176
Query: 247 --ATDLFTKEAVQLIEDQPVDKPXXXXXXXXXXXXXXXXXXXEAPQETINQFQYITDPNR 304
T ++ +EA+ I+ Q P AP F + R
Sbjct: 177 ANLTQIYLQEALDFIKRQARHHP---------FFLYWAVDATHAPVYASKPF--LGTSQR 225
Query: 305 RTYAAMVKKLDDSVGTVISALQRKGMLENSIIIFMSDNGAPTVEYRETSNYRNWGSNYPY 364
Y V+++DDS+G ++ LQ + +N+ + F SDNGA + E GSN P+
Sbjct: 226 GRYGDAVREIDDSIGKILELLQDLHVADNTFVFFTSDNGAALISAPEQG-----GSNGPF 280
Query: 365 RGVKNTLWEGGVKVPAILWSPQIQQNPRVSLQMMHISDWLPTLYTAAGGDTSRLPLNIDG 424
K T +EGG++ PA+ W P +VS Q+ I D L T A G T IDG
Sbjct: 281 LCGKQTTFEGGMREPALAWWPGHVTAGQVSHQLGSIMD-LFTTSLALAGLTPPSDRAIDG 339
Query: 425 LDQWSSLL 432
L+ +LL
Sbjct: 340 LNLLPTLL 347
>pdb|1HDH|A Chain A, Arylsulfatase From Pseudomonas Aeruginosa
pdb|1HDH|B Chain B, Arylsulfatase From Pseudomonas Aeruginosa
Length = 536
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 106/413 (25%), Positives = 165/413 (39%), Gaps = 101/413 (24%)
Query: 92 GWNDLSFHGSNEIPTPNIDALAYNGIILNNMYAQPVCTPSRASLMTGKYPIHTGMQ---- 147
G++D+ G EI TPN+DALA G+ L + + +P+R+ L+TG G+
Sbjct: 16 GFSDIGAFG-GEIATPNLDALAIAGLRLTDFHTASTXSPTRSMLLTGTDHHIAGIGTMAE 74
Query: 148 --GPPIWGAEPRGVPLTERF--LPEYLRELGYSTKAIGKWHLGFFRREYTPLYRGFESHF 203
P + G L ER LPE LRE GY T GKWHLG + E TP RGFE F
Sbjct: 75 ALTPELEGKPGYEGHLNERVVALPELLREAGYQTLMAGKWHLG-LKPEQTPHARGFERSF 133
Query: 204 GYLNGVISYYDHILSDQYSRTVELNGH-----DMRRNLSTAWDTVGEYATDLFTKEAVQL 258
L G ++Y S L G + R L T + G Y++D F + +Q
Sbjct: 134 SLLPGAANHYGFEPPYDESTPRILKGTPALYVEDERYLDTLPE--GFYSSDAFGDKLLQY 191
Query: 259 IEDQPVDKPXXXXXXXXXXXXXXXXXXXEAPQETINQF--QYITDPN--RRTYAAMVKKL 314
++++ +P +AP+E + ++ +Y P R+ A +K+L
Sbjct: 192 LKERDQSRP-----FFAYLPFSAPHWPLQAPREIVEKYRGRYDAGPEALRQERLARLKEL 246
Query: 315 --------------------------------------------DDSVGTVISALQRKGM 330
D ++G V+ L+R+G
Sbjct: 247 GLVEADVEAHPVLALTREWEALEDEERAKSARAMEVYAAMVERMDWNIGRVVDYLRRQGE 306
Query: 331 LENSIIIFMSDNGAP------------------------TVEYRETSNYRNW-------G 359
L+N+ ++FMSDNGA ++E +N W
Sbjct: 307 LDNTFVLFMSDNGAEGALLEAFPKFGPDLLGFLDRHYDNSLENIGRANSYVWYGPRWAQA 366
Query: 360 SNYPYRGVKNTLWEGGVKVPAILWSPQIQQNPRVSLQMMHISDWLPTLYTAAG 412
+ P R K +GG++VPA++ P++ + +S + D PTL AG
Sbjct: 367 ATAPSRLYKAFTTQGGIRVPALVRYPRLSRQGAISHAFATVMDVTPTLLDLAG 419
>pdb|1P49|A Chain A, Structure Of Human Placental EstroneDHEA SULFATASE
Length = 562
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 92 GWNDLSFHGSNEIPTPNIDALAYNGIILN-NMYAQPVCTPSRASLMTGKYPIHTGMQ--- 147
G D +G+ I TPNID LA G+ L ++ A P+ TPSRA+ MTG+YP+ +GM
Sbjct: 17 GIGDPGCYGNKTIRTPNIDRLASGGVKLTQHLAASPLXTPSRAAFMTGRYPVRSGMASWS 76
Query: 148 --GPPIWGAEPRGVPLTERFLPEYLRELGYSTKAIGKWHLGFFRREYT-----PLYRGFE 200
G ++ A G+P E + L++ GYST IGKWHLG T PL+ GF
Sbjct: 77 RTGVFLFTASSGGLPTDEITFAKLLKDQGYSTALIGKWHLGMSCHSKTDFCHHPLHHGFN 136
Query: 201 SHFG 204
+G
Sbjct: 137 YFYG 140
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 306 TYAAMVKKLDDSVGTVISALQRKGMLENSIIIFMSDNGAPTVEYRETSNYRNWGSNYPYR 365
Y V+++D SVG +++ L + +++I F SD GA VE + + GSN Y+
Sbjct: 286 VYGDAVEEMDWSVGQILNLLDELRLANDTLIYFTSDQGA-HVEEVSSKGEIHGGSNGIYK 344
Query: 366 GVKNTLWEGGVKVPAILWSPQIQQNPRVSLQMMHISDWLPTLYTAAGGDTSRLPLN--ID 423
G K WEGG++VP IL P++ Q + + D PT+ AG + LP + ID
Sbjct: 345 GGKANNWEGGIRVPGILRWPRVIQAGQKIDEPTSNMDIFPTVAKLAG---APLPEDRIID 401
Query: 424 GLD 426
G D
Sbjct: 402 GRD 404
>pdb|1E2S|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69a
Length = 489
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 92 GWNDLSFHGSNEIPTPNIDALAYNGIILNNMYAQPV--CTPSRASLMTGKYPIHTGMQGP 149
G+ DL +G TPN+D LA G+ + Y PV TPSRA+L+TG+ P+ GM
Sbjct: 14 GYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYV-PVSLATPSRAALLTGRLPVRMGMYPG 72
Query: 150 PIWGAEPRGVPLTERFLPEYLRELGYSTKAIGKWHLGFF-RREYTPLYRGFESHFG 204
+ + G+PL E + E L GY T GKWHLG + P ++GF G
Sbjct: 73 VLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLG 128
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 84/196 (42%), Gaps = 35/196 (17%)
Query: 303 NRRTYAAMVKKLDDSVGTVISALQRKGMLENSIIIFMSDNGAPTVEYRETSNYRNWGSNY 362
R + + +LD +VGT+++A+ G+LE +++IF +DNG ET G +
Sbjct: 225 GRGPFGDSLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGP------ETMRMSRGGCSG 278
Query: 363 PYRGVKNTLWEGGVKVPAI-LWSPQIQQNPRVSLQMMHISDWLPTLYTAAGGDTSRLPLN 421
R K T +EGGV+ PA+ W I P V+ ++ D LPTL AG + LP
Sbjct: 279 LLRCGKGTTYEGGVREPALAFWPGHIA--PGVTHELASSLDLLPTLAALAG---APLP-- 331
Query: 422 IDGLDQWSSLLLNTPSRRNSNIDGLDQWSSLLLNTPSRRNSVLI---NIDEKKRTAAVRL 478
N +DG D LL S R S+ DE + AVR
Sbjct: 332 ------------------NVTLDGFDLSPLLLGTGKSPRQSLFFYPSYPDEVRGVFAVRT 373
Query: 479 DSWKLVLGTQENGTMD 494
+K TQ + D
Sbjct: 374 GKYKAHFFTQGSAHSD 389
>pdb|1E33|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant P426l
Length = 489
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 92 GWNDLSFHGSNEIPTPNIDALAYNGIILNNMYAQPVC--TPSRASLMTGKYPIHTGMQGP 149
G+ DL +G TPN+D LA G+ + Y PV TPSRA+L+TG+ P+ GM
Sbjct: 14 GYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYV-PVSLXTPSRAALLTGRLPVRMGMYPG 72
Query: 150 PIWGAEPRGVPLTERFLPEYLRELGYSTKAIGKWHLGFF-RREYTPLYRGFESHFG 204
+ + G+PL E + E L GY T GKWHLG + P ++GF G
Sbjct: 73 VLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLG 128
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 84/196 (42%), Gaps = 35/196 (17%)
Query: 303 NRRTYAAMVKKLDDSVGTVISALQRKGMLENSIIIFMSDNGAPTVEYRETSNYRNWGSNY 362
R + + +LD +VGT+++A+ G+LE +++IF +DNG ET G +
Sbjct: 225 GRGPFGDSLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGP------ETMRMSRGGCSG 278
Query: 363 PYRGVKNTLWEGGVKVPAI-LWSPQIQQNPRVSLQMMHISDWLPTLYTAAGGDTSRLPLN 421
R K T +EGGV+ PA+ W I P V+ ++ D LPTL AG + LP
Sbjct: 279 LLRCGKGTTYEGGVREPALAFWPGHIA--PGVTHELASSLDLLPTLAALAG---APLP-- 331
Query: 422 IDGLDQWSSLLLNTPSRRNSNIDGLDQWSSLLLNTPSRRNSVLI---NIDEKKRTAAVRL 478
N +DG D LL S R S+ DE + AVR
Sbjct: 332 ------------------NVTLDGFDLSPLLLGTGKSPRQSLFFYPSYPDEVRGVFAVRT 373
Query: 479 DSWKLVLGTQENGTMD 494
+K TQ + D
Sbjct: 374 GKYKAHFFTQGSAHSD 389
>pdb|1N2K|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1N2L|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1AUK|A Chain A, Human Arylsulfatase A
Length = 489
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 92 GWNDLSFHGSNEIPTPNIDALAYNGIILNNMYAQPVC--TPSRASLMTGKYPIHTGMQGP 149
G+ DL +G TPN+D LA G+ + Y PV TPSRA+L+TG+ P+ GM
Sbjct: 14 GYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYV-PVSLXTPSRAALLTGRLPVRMGMYPG 72
Query: 150 PIWGAEPRGVPLTERFLPEYLRELGYSTKAIGKWHLGFF-RREYTPLYRGFESHFG 204
+ + G+PL E + E L GY T GKWHLG + P ++GF G
Sbjct: 73 VLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLG 128
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 84/196 (42%), Gaps = 35/196 (17%)
Query: 303 NRRTYAAMVKKLDDSVGTVISALQRKGMLENSIIIFMSDNGAPTVEYRETSNYRNWGSNY 362
R + + +LD +VGT+++A+ G+LE +++IF +DNG ET G +
Sbjct: 225 GRGPFGDSLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGP------ETMRMSRGGCSG 278
Query: 363 PYRGVKNTLWEGGVKVPAI-LWSPQIQQNPRVSLQMMHISDWLPTLYTAAGGDTSRLPLN 421
R K T +EGGV+ PA+ W I P V+ ++ D LPTL AG + LP
Sbjct: 279 LLRCGKGTTYEGGVREPALAFWPGHIA--PGVTHELASSLDLLPTLAALAG---APLP-- 331
Query: 422 IDGLDQWSSLLLNTPSRRNSNIDGLDQWSSLLLNTPSRRNSVLI---NIDEKKRTAAVRL 478
N +DG D LL S R S+ DE + AVR
Sbjct: 332 ------------------NVTLDGFDLSPLLLGTGKSPRQSLFFYPSYPDEVRGVFAVRT 373
Query: 479 DSWKLVLGTQENGTMD 494
+K TQ + D
Sbjct: 374 GKYKAHFFTQGSAHSD 389
>pdb|1E1Z|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s
Length = 489
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 92 GWNDLSFHGSNEIPTPNIDALAYNGIILNNMYAQPVC--TPSRASLMTGKYPIHTGMQGP 149
G+ DL +G TPN+D LA G+ + Y PV TPSRA+L+TG+ P+ GM
Sbjct: 14 GYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYV-PVSLSTPSRAALLTGRLPVRMGMYPG 72
Query: 150 PIWGAEPRGVPLTERFLPEYLRELGYSTKAIGKWHLGFF-RREYTPLYRGFESHFG 204
+ + G+PL E + E L GY T GKWHLG + P ++GF G
Sbjct: 73 VLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLG 128
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 84/196 (42%), Gaps = 35/196 (17%)
Query: 303 NRRTYAAMVKKLDDSVGTVISALQRKGMLENSIIIFMSDNGAPTVEYRETSNYRNWGSNY 362
R + + +LD +VGT+++A+ G+LE +++IF +DNG ET G +
Sbjct: 225 GRGPFGDSLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGP------ETMRMSRGGCSG 278
Query: 363 PYRGVKNTLWEGGVKVPAI-LWSPQIQQNPRVSLQMMHISDWLPTLYTAAGGDTSRLPLN 421
R K T +EGGV+ PA+ W I P V+ ++ D LPTL AG + LP
Sbjct: 279 LLRCGKGTTYEGGVREPALAFWPGHIA--PGVTHELASSLDLLPTLAALAG---APLP-- 331
Query: 422 IDGLDQWSSLLLNTPSRRNSNIDGLDQWSSLLLNTPSRRNSVLI---NIDEKKRTAAVRL 478
N +DG D LL S R S+ DE + AVR
Sbjct: 332 ------------------NVTLDGFDLSPLLLGTGKSPRQSLFFYPSYPDEVRGVFAVRT 373
Query: 479 DSWKLVLGTQENGTMD 494
+K TQ + D
Sbjct: 374 GKYKAHFFTQGSAHSD 389
>pdb|1E3C|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s Soaked
In Synthetic Substrate
Length = 489
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 92 GWNDLSFHGSNEIPTPNIDALAYNGIILNNMYAQPVC--TPSRASLMTGKYPIHTGMQGP 149
G+ DL +G TPN+D LA G+ + Y PV TPSRA+L+TG+ P+ GM
Sbjct: 14 GYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYV-PVSLSTPSRAALLTGRLPVRMGMYPG 72
Query: 150 PIWGAEPRGVPLTERFLPEYLRELGYSTKAIGKWHLGFF-RREYTPLYRGFESHFG 204
+ + G+PL E + E L GY T GKWHLG + P ++GF G
Sbjct: 73 VLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLG 128
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 84/196 (42%), Gaps = 35/196 (17%)
Query: 303 NRRTYAAMVKKLDDSVGTVISALQRKGMLENSIIIFMSDNGAPTVEYRETSNYRNWGSNY 362
R + + +LD +VGT+++A+ G+LE +++IF +DNG ET G +
Sbjct: 225 GRGPFGDSLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGP------ETMRMSRGGCSG 278
Query: 363 PYRGVKNTLWEGGVKVPAI-LWSPQIQQNPRVSLQMMHISDWLPTLYTAAGGDTSRLPLN 421
R K T +EGGV+ PA+ W I P V+ ++ D LPTL AG + LP
Sbjct: 279 LLRCGKGTTYEGGVREPALAFWPGHIA--PGVTHELASSLDLLPTLAALAG---APLP-- 331
Query: 422 IDGLDQWSSLLLNTPSRRNSNIDGLDQWSSLLLNTPSRRNSVLI---NIDEKKRTAAVRL 478
N +DG D LL S R S+ DE + AVR
Sbjct: 332 ------------------NVTLDGFDLSPLLLGTGKSPRQSLFFYPSYPDEVRGVFAVRT 373
Query: 479 DSWKLVLGTQENGTMD 494
+K TQ + D
Sbjct: 374 GKYKAHFFTQGSAHSD 389
>pdb|3ED4|A Chain A, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|B Chain B, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|C Chain C, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|D Chain D, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
Length = 502
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 55/101 (54%)
Query: 307 YAAMVKKLDDSVGTVISALQRKGMLENSIIIFMSDNGAPTVEYRETSNYRNWGSNYPYRG 366
Y A + LD VG V+ ++ G +N+I+IF SDNG T E R+ G RG
Sbjct: 270 YYANISYLDAQVGKVLDKIKAMGEEDNTIVIFTSDNGPVTREARKVYELNLAGETDGLRG 329
Query: 367 VKNTLWEGGVKVPAILWSPQIQQNPRVSLQMMHISDWLPTL 407
K+ LWEGG++VPAI+ + VS ++ DW+PTL
Sbjct: 330 RKDNLWEGGIRVPAIIKYGKHLPQGMVSDTPVYGLDWMPTL 370
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 92 GWNDLSFHGSNEIPTPNIDALAYNGIILNNMYA-QPVCTPSRASLMTGKYPIHTGMQGPP 150
G+ DL+ +G + TPNID LA G+ + YA P+ +PSRA L+TG+ P TG++
Sbjct: 39 GYGDLATYGHQIVKTPNIDRLAQEGVKFTDYYAPAPLSSPSRAGLLTGRMPFRTGIRS-- 96
Query: 151 IWGAEPRGVPL--TERFLPEYLRELGYSTKAIGKWHL 185
W + V L E + L+ GY T +GK HL
Sbjct: 97 -WIPSGKDVALGRNELTIANLLKAQGYDTAMMGKLHL 132
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 564 NGPCYLFNLGNDPCEQNNIASSRPDISSQLY-ELLKYH----RRTLVPQSHEQPDLV 615
N P YL+NL +D E N+ +PDI Q+Y + LKY +L+ ++P+ V
Sbjct: 435 NKPKYLYNLKSDRYETLNLIGKKPDIEKQMYGKFLKYKTDIDNDSLMKARGDKPEAV 491
>pdb|2QZU|A Chain A, Crystal Structure Of The Putative Sulfatase Yidj From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr123
Length = 491
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 100 GSNEIPTPNIDALAYNGI-ILNNMYAQPVCTPSRASLMTGKYPIHTGMQGPPIWGAEPRG 158
G + TP++D LA GI N + + PV +P+R L TG YPI + + G P G
Sbjct: 47 GKEPVKTPHLDKLASEGINFTNAISSYPVSSPARGXLXTGXYPIGSKVTGNCNSETAPYG 106
Query: 159 VPLTE--RFLPEYLRELGYSTKAIGKWHLGFFRREYTPLY 196
V L++ R + L++ GY+ IGKWHL + Y Y
Sbjct: 107 VELSQNARCWSDVLKDQGYNXGYIGKWHLDAPYKPYVDTY 146
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 303 NRRTYAAMVKKLDDSVGTVISALQRKGMLENSIIIFMSDNGAPTVEYRETSNYRNWGSNY 362
N R Y A + +D++VG +I AL++ + +N+I++F SD+G +
Sbjct: 275 NIRNYYACITGVDENVGRIIEALKQNNLFDNTIVVFTSDHGICXGAHENAG--------- 325
Query: 363 PYRGVKNTLWEGGVKVPAIL-WSPQIQQNPRVSLQM-MHISDWLPTLYTAAGGDTSRLPL 420
K+ +E ++P IL W QI+ PR S + + +D PTL + G + +P
Sbjct: 326 -----KDIFYEESXRIPXILSWPDQIK--PRKSDPLXIAFADLYPTLLSXXGF-SKEIPE 377
Query: 421 NIDGLDQWSSLL 432
+ D + +L
Sbjct: 378 TVQTFDLSNEVL 389
>pdb|2W8S|B Chain B, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
pdb|2W8S|C Chain C, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
pdb|2W8S|D Chain D, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
Length = 514
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 104 IPTPNIDALAYNGIILNNMYAQ--PVCTPSRASLMTGKYPI-HTGMQGPPIWGAEPRGVP 160
+ TPN+D L G+ N P C P+RASL+TG Y + H +Q VP
Sbjct: 31 LKTPNLDRLCREGLTFRNHVTTCVPXCGPARASLLTGLYLMNHRAVQNT---------VP 81
Query: 161 LTERF--LPEYLRELGYSTKAIG 181
L +R L + LR +GY IG
Sbjct: 82 LDQRHLNLGKALRAIGYDPALIG 104
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 304 RRTYAAMVKKLDDSVGTVISALQRKGMLENSIIIFMSDNG 343
R TY ++ ++DD +G V + L G ++++IIF SD+G
Sbjct: 287 RATYCGLITEIDDCLGRVFAYLDETGQWDDTLIIFTSDHG 326
>pdb|2W8S|A Chain A, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
Length = 513
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 104 IPTPNIDALAYNGIILNNMY--AQPVCTPSRASLMTGKYPI-HTGMQGPPIWGAEPRGVP 160
+ TPN+D L G+ N P C P+RASL+TG Y + H +Q VP
Sbjct: 30 LKTPNLDRLCREGLTFRNHVTTCVPXCGPARASLLTGLYLMNHRAVQNT---------VP 80
Query: 161 LTERF--LPEYLRELGYSTKAIG 181
L +R L + LR +GY IG
Sbjct: 81 LDQRHLNLGKALRAIGYDPALIG 103
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 304 RRTYAAMVKKLDDSVGTVISALQRKGMLENSIIIFMSDNG 343
R TY ++ ++DD +G V + L G ++++IIF SD+G
Sbjct: 286 RATYCGLITEIDDCLGRVFAYLDETGQWDDTLIIFTSDHG 325
>pdb|2VQR|A Chain A, Crystal Structure Of A Phosphonate Monoester Hydrolase
From Rhizobium Leguminosarum: A New Member Of The
Alkaline Phosphatase Superfamily
Length = 514
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 104 IPTPNIDALAYNGIILNNMYAQ--PVCTPSRASLMTGKYPI-HTGMQGPPIWGAEPRGVP 160
+ TPN+D L G+ N P C P+RASL+TG Y + H +Q VP
Sbjct: 31 LKTPNLDRLCREGVTFRNHVTTCVPXCGPARASLLTGLYLMNHRAVQ---------NTVP 81
Query: 161 LTERF--LPEYLRELGYSTKAIG 181
L +R L + LR +GY IG
Sbjct: 82 LDQRHLNLGKALRGVGYDPALIG 104
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 304 RRTYAAMVKKLDDSVGTVISALQRKGMLENSIIIFMSDNG 343
R TY ++ ++DD +G V S L G ++++IIF SD+G
Sbjct: 287 RATYCGLITEVDDCLGRVFSYLDETGQWDDTLIIFTSDHG 326
>pdb|3B5Q|A Chain A, Crystal Structure Of A Putative Sulfatase (Np_810509.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A
Resolution
pdb|3B5Q|B Chain B, Crystal Structure Of A Putative Sulfatase (Np_810509.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A
Resolution
Length = 482
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 109 IDALAYNGIILNNMY-AQPVCTPSRASLMTGKYPIHTGMQ---GPPIWGAEPRGVPLTER 164
ID +A G+I +N Y P+ PSRA+L +G P T ++ P+ P VP
Sbjct: 45 IDEVASRGVIFSNAYVGCPLSQPSRAALWSGXXPHQTNVRSNSSEPVNTRLPENVPT--- 101
Query: 165 FLPEYLRELGYSTKAIGKWH-----LGFFRREYTPLYRGF 199
L E GY GK H GF +E P+ + F
Sbjct: 102 -LGSLFSESGYEAVHFGKTHDXGSLRGFKHKE--PVAKPF 138
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 19/116 (16%)
Query: 303 NRRTYAAM----VKKLDDSVGTVISALQRKGMLENSIIIFMSDNGAPTVEYRETSNYRNW 358
N R Y A K + V +V+ AL N+I++ +D+G +R + + ++
Sbjct: 242 NYRHYIAAFQHYTKXVSKQVDSVLKALYSTPAGRNTIVVIXADHGDGXASHRXVTKHISF 301
Query: 359 GSNYPYRGVKNTLWEGGVKVPAILWSPQI--QQNPRVSLQMMHISDWLPTLYTAAG 412
++ VP I P I Q+ P L D LPTL AG
Sbjct: 302 -------------YDEXTNVPFIFAGPGIKQQKKPVDHLLTQPTLDLLPTLCDLAG 344
>pdb|2IUC|B Chain B, Structure Of Alkaline Phosphatase From The Antarctic
Bacterium Tab5
Length = 375
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 311 VKKLDDSVGTVISALQRKGMLENSIIIFMSDNGAPTVEYRETSNYRNWGSNYP-YRGVKN 369
+ DD++GT ++ + G N+++I SD+ SN R GS Y Y +
Sbjct: 274 INDFDDAIGTALAFAKSDG---NTLVIVTSDHETGGFTLAAKSNKREDGSEYSDYTEIGP 330
Query: 370 TLWEGG---VKVPAILWSP------QIQQNPRVSLQMMHISDW 403
T GG +P + P I +N + +++ ++ W
Sbjct: 331 TFSTGGHSATLIPVFAYGPGSEEFIGIYENNEIFHKILKVTKW 373
>pdb|2ZIV|B Chain B, Crystal Structure Of The Mus81-Eme1 Complex
Length = 351
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 6/32 (18%)
Query: 372 WEGGVKVP------AILWSPQIQQNPRVSLQM 397
W GGVKV A++W QIQQ RVSL+M
Sbjct: 246 WAGGVKVDLAGRGLALVWRRQIQQLNRVSLEM 277
>pdb|2ZIU|B Chain B, Crystal Structure Of The Mus81-Eme1 Complex
pdb|2ZIX|B Chain B, Crystal Structure Of The Mus81-Eme1 Complex
Length = 341
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 6/32 (18%)
Query: 372 WEGGVKVP------AILWSPQIQQNPRVSLQM 397
W GGVKV A++W QIQQ RVSL+M
Sbjct: 236 WAGGVKVDLAGRGLALVWRRQIQQLNRVSLEM 267
>pdb|2GSN|A Chain A, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE
pdb|2GSN|B Chain B, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE
pdb|2GSO|A Chain A, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE IN COMPLEX WITH
VANADATE
pdb|2GSO|B Chain B, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE IN COMPLEX WITH
VANADATE
pdb|2GSU|A Chain A, Structure Of Xac Nucleotide
Pyrophosphatase/phosphodiesterase In Complex With Amp
pdb|2GSU|B Chain B, Structure Of Xac Nucleotide
Pyrophosphatase/phosphodiesterase In Complex With Amp
pdb|2RH6|A Chain A, Structure Of Xac Npp For Evaluation Of Refinement
Methodology
pdb|2RH6|B Chain B, Structure Of Xac Npp For Evaluation Of Refinement
Methodology
Length = 393
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 291 ETINQFQYITDPNRRTYAAMVKKLDDSVGTVISALQRKGMLENSIIIFMSDNGAPTV 347
E +++ + P R YA V+ +D ++G +++ +QR G + II +SD+G V
Sbjct: 168 EHVDEAGHDHGPESRQYADAVRAVDAAIGRLLAGMQRDGTRARTNIIVVSDHGMAEV 224
>pdb|2ZIW|B Chain B, Crystal Structure Of The Mus81-Eme1 Complex
Length = 341
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 6/31 (19%)
Query: 372 WEGGVKVP------AILWSPQIQQNPRVSLQ 396
W GGVKV A++W QIQQ RVSL+
Sbjct: 236 WAGGVKVDLAGRGLALVWRRQIQQLNRVSLE 266
>pdb|1UZ8|B Chain B, Anti-Lewis X Fab Fragment In Complex With Lewis X
pdb|1UZ8|H Chain H, Anti-Lewis X Fab Fragment In Complex With Lewis X
Length = 212
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 413 GDTSRLPLNIDGLD---QWSSLLLNTPSRRNSNIDGLDQWSSLLLNTPSRRNSVLINIDE 469
G + +L G D W S + P + I ++ SS + TPS ++ +I+ D
Sbjct: 15 GGSQKLSCAASGFDFSGYWMSWVRQAPGKGLEWIGEINPDSSTINYTPSLKDKFIISRDN 74
Query: 470 KKRT-----AAVRLDSWKLVLGTQENGTMDGYYGQ 499
K T + VR + L +E GT Y+GQ
Sbjct: 75 AKNTLYLQMSKVRSEDTALYYCARETGTRFDYWGQ 109
>pdb|1UZ6|F Chain F, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|H Chain H, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|P Chain P, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|W Chain W, Anti-Lewis X Fab Fragment Uncomplexed
Length = 217
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 413 GDTSRLPLNIDGLD---QWSSLLLNTPSRRNSNIDGLDQWSSLLLNTPSRRNSVLINIDE 469
G + +L G D W S + P + I ++ SS + TPS ++ +I+ D
Sbjct: 15 GGSQKLSCAASGFDFSGYWMSWVRQAPGKGLEWIGEINPDSSTINYTPSLKDKFIISRDN 74
Query: 470 KKRT-----AAVRLDSWKLVLGTQENGTMDGYYGQ 499
K T + VR + L +E GT Y+GQ
Sbjct: 75 AKNTLYLQMSKVRSEDTALYYCARETGTRFDYWGQ 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,674,138
Number of Sequences: 62578
Number of extensions: 770326
Number of successful extensions: 1569
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1502
Number of HSP's gapped (non-prelim): 43
length of query: 632
length of database: 14,973,337
effective HSP length: 105
effective length of query: 527
effective length of database: 8,402,647
effective search space: 4428194969
effective search space used: 4428194969
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)