RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12301
(632 letters)
>gnl|CDD|225661 COG3119, AslA, Arylsulfatase A and related enzymes [Inorganic ion
transport and metabolism].
Length = 475
Score = 212 bits (541), Expect = 8e-62
Identities = 122/435 (28%), Positives = 173/435 (39%), Gaps = 74/435 (17%)
Query: 92 GWNDLSFHGSNE-IPTPNIDALAYNGIILNNMYAQ-PVCTPSRASLMTGKYPIHTGMQGP 149
G+ DL +G PTPNID LA G+ N Y P C PSRA+L+TG+YP TG+ G
Sbjct: 16 GYGDLGAYGGPVVGPTPNIDRLAAEGVRFTNAYTTSPCCGPSRAALLTGRYPFRTGVGGN 75
Query: 150 PIWGAEPRGVPLTERFLPEYLRELGYSTKAIGKWHLGFFRREYTPLYRGFESHFGYLNGV 209
P G+P L E L+E GY T GKWHLG + GF+ +G+L G+
Sbjct: 76 AEPPGYPGGLPDEVPTLAELLKEAGYYTALFGKWHLGEKDEDPAGGDHGFDEFYGFLGGL 135
Query: 210 ISYYDHILSDQYSRTVELNGHDMRR-----NLSTAWDTVG-------------------- 244
+ L D +A
Sbjct: 136 TDEWYPELVDVPPPGDVPEFDQEEGDPYVAGKDSADLADRFRRQAKEDAPDKPPFLLTAP 195
Query: 245 ------EYATDLFTKEAVQLIEDQPV-DKPLFLYLA----HLAAHAGNAGKHLEAPQETI 293
+ + E + D+P FLYLA HL+ A +E
Sbjct: 196 FAPPAPDPVDFEWPDEYRGFYDRAKRLDRPFFLYLAPPDPHLSRRLPAADGLPAEEEEDG 255
Query: 294 NQFQYITDPNRRTYAAMVKKLDDSVGTVISALQRKGMLENSIIIFMSDNGAPTVEYRETS 353
+ YAA V+ LDD +G ++ AL+ G+L+N+I++F SD+GA
Sbjct: 256 AR-------LMTVYAACVRYLDDQIGRLLDALKELGLLDNTIVVFTSDHGAWL------- 301
Query: 354 NYRNWGSNYPYRGVKNTLWEGGVKVPAILWSP-QIQQNPRVSLQMMHISDWLPTLYTAAG 412
P+RG K TL+EGG +VP I+ P I+ RV ++ + D LPTL AAG
Sbjct: 302 ----GAHGTPFRGYKGTLYEGGTRVPLIIRWPGGIKPGGRVVDALVSLIDLLPTLLDAAG 357
Query: 413 GDTSRLPLNIDGLDQWSSLLLNTPSRRNSNIDGLDQWSSLLLNTPSRRNSVLIN---IDE 469
P ++DG P + +DG+ L + +V E
Sbjct: 358 VP---PPKDLDGQSLP-------PKLQKPGLDGVPLLEWLA----GGKAAVREEYGYFGE 403
Query: 470 KKRTAAVRLDSWKLV 484
A+R D WK +
Sbjct: 404 LFGLRAIRRDDWKYI 418
>gnl|CDD|216172 pfam00884, Sulfatase, Sulfatase.
Length = 332
Score = 183 bits (467), Expect = 1e-52
Identities = 90/351 (25%), Positives = 143/351 (40%), Gaps = 53/351 (15%)
Query: 92 GWNDLSFHGSNEIPTPNIDALAYNGIILNNMY-AQPVCTPSRASLMTGKYPIHTGMQGPP 150
DL +G TP +D LA G++ +N Y + PSR +L+TG P + G
Sbjct: 12 RAPDLGLYGYPRPTTPFLDRLAEEGLLFSNFYSGGTLTAPSRFALLTGLPPHNFGSGVST 71
Query: 151 IWGAEPRGVPLTERFLPEYLRELGYSTKAIGKWHLGFFRREYTPLYRGFESHFGYLNGVI 210
G +P TE LP+ L+ GY+T AIGKWHL ++ R+ GF+ FG G
Sbjct: 72 PIG-----LPRTEPSLPDLLKRAGYNTGAIGKWHLSWYNRQSVYKNLGFDKFFGRNTGED 126
Query: 211 SYYDHILSDQYSRTVELNGHDMRRNLSTAWDTVGEYATDLFTKEAVQLIEDQPVDKPLFL 270
Y D + G + + EA++ + DKP FL
Sbjct: 127 LYKD-------------------PEDVGYNCSGGGVSDEALLDEALEFL--DNNDKPFFL 165
Query: 271 YLAHLAAHAGNAGKHLEAPQETINQFQYITDPN-------RRTYAAMVKKLDDSVGTVIS 323
L + +H P ++ + +Y + DD++G V+
Sbjct: 166 VLHTMGSHGP-----PYYPDRYPEKYATFKPTSTCSEEQLLNSYDNSLLYTDDAIGRVLE 220
Query: 324 ALQRKGMLENSIIIFMSDNGAPTVEYRETSNYRNWGSNYPYRGVKNTLWEGGVKVPAILW 383
L G+L+N+++++ SD+G G Y + G + EGG +VP ++W
Sbjct: 221 KL-ENGLLDNTLVVYTSDHGPSLG-----------GGGYLHGGKTDNAPEGGYRVPLLIW 268
Query: 384 SPQIQQNPRVSLQMMHISDWLPTLYTAAGGDTSRLPLNIDGLDQWSSLLLN 434
SP + + + ++ D PT+ AG T L L DG D +L
Sbjct: 269 SPGGKPKGQKNEALVSHVDLFPTILDLAGILTEDLLL--DGKDLLPTLEGK 317
Score = 31.7 bits (72), Expect = 1.0
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 3 RNLSTAWDTVGEYATDLFTKEAVQLIEDQPVDKPLFLYLAHLAAHAGNAGKHLEAPQETI 62
+ G + + EA++ + DKP FL L + +H P
Sbjct: 131 PEDVGYNCSGGGVSDEALLDEALEFL--DNNDKPFFLVLHTMGSHGP-----PYYPDRYP 183
Query: 63 NQFQYITDPNRRT 75
++ + +
Sbjct: 184 EKYATFKPTSTCS 196
>gnl|CDD|237491 PRK13759, PRK13759, arylsulfatase; Provisional.
Length = 485
Score = 115 bits (291), Expect = 2e-27
Identities = 100/396 (25%), Positives = 156/396 (39%), Gaps = 81/396 (20%)
Query: 96 LSFHGSNEIPTPNIDALAYNGIILNNMY-AQPVCTPSRASLMTGKYPIHTGMQGPPIWGA 154
L +G+ + TPN+D LA G N Y A P CTP+RA+L+TG H G G +G
Sbjct: 22 LGCNGNKAVETPNLDMLASEGYNFENAYSAVPSCTPARAALLTGLSQWHHGRVG---YGD 78
Query: 155 E-PRGVPLTERFLPEYLRELGYSTKAIGKWHLGFFRREYTPLYRGFES---HFGYLNGVI 210
P T LP+ R+ GY T+ IGK H+ R GF + H GYL+
Sbjct: 79 VVPWNYKNT---LPQEFRDAGYYTQCIGKMHVFPQRNLL-----GFHNVLLHDGYLH-SG 129
Query: 211 SYYDHILSDQYS------------RTVELNGHDMRRNLSTA--WDTVGEY-ATDLFTKEA 255
D D S + +L N A WD T+ E+
Sbjct: 130 RNEDKSQFDFVSDYLAWLREKAPGKDPDLTDIGWDCNSWVARPWDLEERLHPTNWVGSES 189
Query: 256 VQLIEDQPVDKPLFLYLAHLAAHAG--------NAGKHLEAPQETINQFQYITDPN---- 303
++ + + KP FL ++ H+ + K + P I ++Y D +
Sbjct: 190 IEFLRRRDPTKPFFLKMSFARPHSPYDPPKRYFDMYKDADIPDPHIGDWEYAEDQDPEGG 249
Query: 304 -----------------RRTYAAMVKKLDDSVGTVISALQRKGMLENSIIIFMSDNGAPT 346
R Y ++ +D +G + AL+ G+L+N+II+F+SD+G
Sbjct: 250 SIDALRGNLGEEYARRARAAYYGLITHIDHQIGRFLQALKEFGLLDNTIILFVSDHG--- 306
Query: 347 VEYRETSNYRNWGSNYPYRGVKNTLWEGGVKVPAIL-WSPQIQQNPR--VSLQMMHISDW 403
++ + YPY EG +P I+ + R V Q++ + D
Sbjct: 307 ---DMLGDHYLFRKGYPY--------EGSAHIPFIIYDPGGLLAGNRGTVIDQVVELRDI 355
Query: 404 LPTLYTAAGGDTSRLPLNIDGLDQWSSLLLNTPSRR 439
+PTL AGG P ++DG + + R
Sbjct: 356 MPTLLDLAGGTI---PDDVDGRSLKNLIFGQYEGWR 388
>gnl|CDD|234202 TIGR03417, chol_sulfatase, choline-sulfatase.
Length = 500
Score = 59.7 bits (145), Expect = 2e-09
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 304 RRTYAAMVKKLDDSVGTVISALQRKGMLENSIIIFMSDNGAPTVEYRETSNYRNWGSNYP 363
RR Y + +DD +G ++ L+ +++II+F SD+G E
Sbjct: 252 RRAYFGAISYIDDKIGELLDTLEETRQADDTIIVFTSDHGDMLGE--------------- 296
Query: 364 YRGV--KNTLWEGGVKVPAILWSPQIQQNPRVSLQMMHISDWLPTLYTAAGGDTSRLPLN 421
RG+ K + +EG +VP ++ +P RV + + D LPTL AGGD +
Sbjct: 297 -RGLWYKMSFFEGSARVPLMIAAPGRFAPGRVDAPVSTL-DLLPTLVDLAGGDMDEVAPW 354
Query: 422 IDG 424
DG
Sbjct: 355 TDG 357
Score = 55.5 bits (134), Expect = 4e-08
Identities = 41/122 (33%), Positives = 52/122 (42%), Gaps = 27/122 (22%)
Query: 86 TLLIVYGWNDLSFHGSNEIPTPNIDALAYNGIILNNMY-AQPVCTPSRASLMTGKYPIHT 144
TLL YG + PN+ LA ++ +N Y A P+C PSRAS M+G+ P T
Sbjct: 16 TLLPDYGPARW-------LHAPNLKRLAARSVVFDNAYCASPLCAPSRASFMSGQLPSRT 68
Query: 145 GMQGPPIW--GAE-PRGVPLTERFLPEYLRELGYSTKAIGKWHL-------GFFRREYTP 194
G + AE +P YLR GY T GK H GF R T
Sbjct: 69 G-----AYDNAAEFASDIPT----YAHYLRRAGYRTALSGKMHFCGPDQLHGFEERLTTD 119
Query: 195 LY 196
+Y
Sbjct: 120 IY 121
Score = 29.7 bits (67), Expect = 5.1
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 562 CTNGPCYLFNLGNDPCEQNNIASSRPDISSQLYELL 597
C P L++L DP E N+A P + L
Sbjct: 399 CEADPDQLYDLEADPHELTNLADD-PAHADTLAAFR 433
>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins,
alkaline phosphatase superfamily [Cell envelope
biogenesis, outer membrane].
Length = 650
Score = 51.7 bits (124), Expect = 8e-07
Identities = 65/357 (18%), Positives = 119/357 (33%), Gaps = 64/357 (17%)
Query: 105 PTPNIDALAYNGIIL--NNMYAQPVCTPSRASLMTGKYPIHTGMQGPPIWGAEPRGVPLT 162
TPN++ L G+ L +N + + + + +G +
Sbjct: 286 VTPNLNKLQKGGVSLLFSNFFGGVTAGSTFDAETGVLSSLFPAARGSVF-----QTYGDN 340
Query: 163 ERF-LPEYLRELGYSTKAIGKWHLGFFRREYTPLYRGFESHFGYLNGVISYYDHILSDQY 221
+ LP L++ GY T A+ F+ R+ F FG+ D +
Sbjct: 341 KYSSLPAILKQQGYKTAALHGGDGSFWNRK------SFYKIFGF--------DDFFDLES 386
Query: 222 SRTVELNGHDMRRNLSTAWDTVGEYATD-LFTKEAVQLIEDQPVDKPLFLYLAHLAAHAG 280
+G+ +G +D KE++ L++ + KP F ++ L+ H
Sbjct: 387 -----FDGNADS--------EIGWGLSDKDLFKESLPLLK--KLKKPFFSFVITLSNHG- 430
Query: 281 NAGKHLEAPQETINQF---QYITDPNRRTYAAMVKKLDDSVGTVISALQRKGMLENSIII 337
E P+ N+ Y V D+++G I L++ G+ +NS+I+
Sbjct: 431 ----PFELPEGKRNELLEEPLSASTALANYLQAVHYADEALGQFIDKLKKSGLYKNSVIV 486
Query: 338 FMSDNGAPTVEYRETSNYRNWGSNYPYRGVKNTLWEGGVKVPAILWSPQIQQ---NPRVS 394
D+ + + G K+ + +VP ++ +P I+ V
Sbjct: 487 LYGDHYGISGNQNLA--------MPKFLG-KSYDIDMLQRVPLLIHAPGIKNKKKIDTVG 537
Query: 395 LQMMHISDWLPTLYTAAGGDTSRLPLNIDGLDQWSSLLLNTPSRRNSNIDGLDQWSS 451
Q+ D PT+ G T G D P R S +S
Sbjct: 538 GQL----DIAPTILGLLGISTKSYAFF--GRDLLGDEPYKVPFRNGSFGTDAKGYSV 588
>gnl|CDD|216635 pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide
pyrophosphatase. This family consists of
phosphodiesterases, including human plasma-cell membrane
glycoprotein PC-1 / alkaline phosphodiesterase i /
nucleotide pyrophosphatase (nppase). These enzymes
catalyze the cleavage of phosphodiester and
phosphosulfate bonds in NAD, deoxynucleotides and
nucleotide sugars. Also in this family is ATX an
autotaxin, tumour cell motility-stimulating protein
which exhibits type I phosphodiesterases activity. The
alignment encompasses the active site. Also present with
in this family is 60-kDa Ca2+-ATPase form F. odoratum.
Length = 342
Score = 49.7 bits (119), Expect = 2e-06
Identities = 50/281 (17%), Positives = 89/281 (31%), Gaps = 71/281 (25%)
Query: 86 TLLIV---YGWNDLSFHGSNEIPTPNIDALAYNGIILNNMYAQ-PVCT-PSRASLMTGKY 140
L+I + + L TPN+ ALA G+ + P T P+ +++TG Y
Sbjct: 1 LLVISLDGFRADYLDRLAG---LTPNLAALAKEGVSAPYLTPVFPTLTFPNHYTIVTGLY 57
Query: 141 PIHTGM-----------QGPPIWGAEPRGVPLTERFLPEYLRELGYSTKAIGKWHLGFFR 189
P G+ + W P + + ++ G A+ +
Sbjct: 58 PGSHGIVGNTWYDPKRLKESTFWDQLPESGDGDPKPIWVTAKKQGLKAAALFWPGSHAAK 117
Query: 190 REYTPLYRGFESHFGYLNGVISYYDHILSDQYSRTVELNGHDMRRNLSTAWDTVGEYATD 249
Y PL NG + I + + ++
Sbjct: 118 PGYGPLVSELPDRLDAYNGSVPLD-VITEPRVDTVLT------------------DWLKL 158
Query: 250 LFTKEAVQLIEDQPVDKPLFLYLAHL--AAHA-GNAGKHLEAPQETINQFQYITDPNRRT 306
L E L L +YL H G +E
Sbjct: 159 LLDAERPDL---------LLVYLEEPDRVGHKYGPDSPEVE------------------- 190
Query: 307 YAAMVKKLDDSVGTVISALQRKGMLENSIIIFMSDNGAPTV 347
++++D ++G ++ AL +G+LEN+ +I +SD+G V
Sbjct: 191 --DALRRVDRAIGRLLEALDERGLLENTNVIVVSDHGMTPV 229
>gnl|CDD|225625 COG3083, COG3083, Predicted hydrolase of alkaline phosphatase
superfamily [General function prediction only].
Length = 600
Score = 47.8 bits (114), Expect = 1e-05
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 13/113 (11%)
Query: 252 TKEAVQLIEDQPVDKPLFLYLAHLAAHAGNAGKHLEAPQETINQFQYITDPNRRTYAAMV 311
T+ + + D P F YL+ ++HA + NQ P + Y +
Sbjct: 379 TQWLLWFGRYRDEDNPWFSYLSLNSSHA--------NDDPSSNQ-AKARPPFKNRYQNAL 429
Query: 312 KKLDDSVGTVISALQRKGMLENSIIIFMSDNGAPTVEYRETSNYRNWGSNYPY 364
+++D +G V+ L+ G+L+N+++I +D+G E+ E WG Y
Sbjct: 430 REVDSQIGRVLEQLRNSGLLDNTVVIITADHG---EEFNEEEQ-NYWGHGTNY 478
>gnl|CDD|217311 pfam02995, DUF229, Protein of unknown function (DUF229). Members
of this family are uncharacterized. They are 500-1200
amino acids in length and share a long region
conservation that probably corresponds to several
domains. The Go annotation for the protein indicates
that it is involved in nematode larval development and
has a positive regulation on growth rate.
Length = 492
Score = 42.3 bits (100), Expect = 6e-04
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 307 YAAMVKKLDDSVGTVISALQRKGMLENSIIIFMSDNGAPTVEYRETS 353
LD+ + + L +G+LEN+I+IFMSD+G + R TS
Sbjct: 304 DFNYASALDEDLLNYLKKLHERGLLENTIVIFMSDHGLRFGKLRRTS 350
>gnl|CDD|224441 COG1524, COG1524, Uncharacterized proteins of the AP superfamily
[General function prediction only].
Length = 450
Score = 41.8 bits (98), Expect = 0.001
Identities = 50/246 (20%), Positives = 93/246 (37%), Gaps = 36/246 (14%)
Query: 106 TPNIDALAYNGIILNNMYAQ-PVCT-PSRASLMTGKYPIHTGMQGPPIWGAEPRGVPLTE 163
P + +LA NG+ + + + P T P +L+TG YP G+ G ++ E L
Sbjct: 61 LPFLSSLAENGVHVAELISVFPTTTRPRHTTLITGSYPDEHGIVGNILYDPETGDSVLQF 120
Query: 164 RFLPEYLR-----ELGYSTKAIGKWHLGFFRREYTPLYRGFESHFGYLNGVISYYDHILS 218
+ E G A + + R + ++ Y
Sbjct: 121 LLDNPTILFPGDDEAGMDVAAPFESLTVSDKL------RVAVDLV-WDVPILHYLHIGGP 173
Query: 219 DQYSRTVELNGHDMRRNLSTAWDTVGEYATD-LFTKEAVQLIEDQPVDKPLFLYLAHLAA 277
D + L D N+ +D + E+ D L ++V L++ D L +YL
Sbjct: 174 DHITMRRFLI--DEDDNIKPGYDYISEHFLDSLLFLDSVLLLDRADPD-LLLVYL----- 225
Query: 278 HAGNAGKHLEAPQETINQFQYITDPNRRTYAAMVKKLDDSVGTVISALQRKGMLENSIII 337
I+ + P+ YA V+++D +G ++ L+++G+ E ++I
Sbjct: 226 -------------PNIDAIGHKYGPDSPEYAEAVREVDSLLGELLELLKKRGLYEEYLVI 272
Query: 338 FMSDNG 343
SD+G
Sbjct: 273 ITSDHG 278
>gnl|CDD|215842 pfam00294, PfkB, pfkB family carbohydrate kinase. This family
includes a variety of carbohydrate and pyrimidine
kinases.
Length = 298
Score = 31.6 bits (72), Expect = 1.2
Identities = 33/191 (17%), Positives = 58/191 (30%), Gaps = 30/191 (15%)
Query: 173 LGYSTKAIGKWHLGFFRREYTPLYRGFESHFGYLNGVISYYDHILSDQYSRT----VELN 228
LG IGK +G GV + Y I D RT + ++
Sbjct: 49 LGGEVTFIGK--VGDD-----NFGEFLLELLKK-EGVDTDYVVIDEDT--RTGLALILVD 98
Query: 229 GHDMR-----RNLSTAWDTVGEYATDLFTKEAVQLIEDQPVDKPLFLY--LAHLAAHAGN 281
G R R + L + + L P+ P L A + G
Sbjct: 99 GDGERTINFYRGAAADLTPEELPEDLLENADILYLSGSLPLPLPEATLEELIEAAKNGGT 158
Query: 282 --------AGKHLEAPQETINQFQYITDPNRRTYAAMVKKLDDSVGTVISALQRKGMLEN 333
LE E + + PN A+ + + + ++AL +
Sbjct: 159 FDPNLRDPLWADLEVLLELLPLADILK-PNEEELEALTGEKINDIEEALAALHKHAKGVK 217
Query: 334 SIIIFMSDNGA 344
++++ + +GA
Sbjct: 218 TVVVTLGADGA 228
>gnl|CDD|235104 PRK03103, PRK03103, DNA polymerase IV; Reviewed.
Length = 409
Score = 31.1 bits (71), Expect = 1.6
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 365 RGVKN--TLWEGGVKVP-AILWSPQIQQNPRVSLQMMHI 400
GVK LWE K P ++ P++Q+ VSLQ+ I
Sbjct: 53 YGVKTAERLWEAQQKCPDLVVVKPRMQRYIDVSLQITRI 91
>gnl|CDD|219398 pfam07394, DUF1501, Protein of unknown function (DUF1501). This
family contains a number of hypothetical bacterial
proteins of unknown function approximately 400 residues
long.
Length = 393
Score = 30.0 bits (68), Expect = 3.9
Identities = 7/32 (21%), Positives = 24/32 (75%)
Query: 312 KKLDDSVGTVISALQRKGMLENSIIIFMSDNG 343
K+LD ++ ++ L+++G+L+++++++ + G
Sbjct: 272 KELDQALAALLKDLKQRGLLDDTLVVWGGEFG 303
>gnl|CDD|216940 pfam02230, Abhydrolase_2, Phospholipase/Carboxylesterase. This
family consists of both phospholipases and
carboxylesterases with broad substrate specificity, and
is structurally related to alpha/beta hydrolases
pfam00561.
Length = 213
Score = 29.2 bits (66), Expect = 5.3
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 301 DPNRRTYAAMVKKLDDSVGTVISALQRKGMLENSIIIF 338
PN A +K +++ +I A + G+ + III
Sbjct: 70 SPNASEDEAGIKNSAETIEELIDAELKTGIPASRIIIG 107
>gnl|CDD|140023 PRK13967, nrdF1, ribonucleotide-diphosphate reductase subunit beta;
Provisional.
Length = 322
Score = 28.9 bits (64), Expect = 7.7
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 501 RSNKVPLLNFNAIVESKTYQSLQQLSQNIFLP--------ISNIDKMRSTRQQATI 548
+V +N+N ++++K Q ++L+ N +LP +++ + ST QQ TI
Sbjct: 5 LVERVHAINWNRLLDAKDLQVWERLTGNFWLPEKIPLSNDLASWQTLSSTEQQTTI 60
>gnl|CDD|234974 PRK01722, PRK01722, formimidoylglutamase; Provisional.
Length = 320
Score = 28.8 bits (65), Expect = 9.7
Identities = 8/37 (21%), Positives = 21/37 (56%)
Query: 569 LFNLGNDPCEQNNIASSRPDISSQLYELLKYHRRTLV 605
L++LG+ C ++ ++ ++ + L+ + RT+V
Sbjct: 86 LYDLGDITCHVTDLEEAQQALADTVGHCLRPNMRTIV 122
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.411
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,391,842
Number of extensions: 3134721
Number of successful extensions: 2362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2343
Number of HSP's successfully gapped: 21
Length of query: 632
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 529
Effective length of database: 6,369,140
Effective search space: 3369275060
Effective search space used: 3369275060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.7 bits)