RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12301
(632 letters)
>d1fsua_ c.76.1.2 (A:) Arylsulfatase B (4-sulfatase) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 492
Score = 227 bits (578), Expect = 9e-68
Identities = 180/550 (32%), Positives = 270/550 (49%), Gaps = 83/550 (15%)
Query: 92 GWNDLSFHGSNEIPTPNIDALAYNGIILNNMYAQPVCTPSRASLMTGKYPIHTGMQGPPI 151
GWND+ FHG + I TP++DALA G++L+N Y QP+ TPSR+ L+TG+Y I TG+Q I
Sbjct: 15 GWNDVGFHG-SRIRTPHLDALAAGGVLLDNYYTQPLATPSRSQLLTGRYQIRTGLQHQII 73
Query: 152 WGAEPRGVPLTERFLPEYLRELGYSTKAIGKWHLGFFRREYTPLYRGFESHFGYLNGVIS 211
W +P VPL E+ LP+ L+E GY+T +GKWHLG +R+E P RGF+++FGYL G
Sbjct: 74 WPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRRGFDTYFGYLLGSED 133
Query: 212 YYDHILSDQY-SRTVELNGHDMRRNLSTAWDTVGEYATDLFTKEAVQLIEDQPVDKPLFL 270
YY H + V D R A Y+T++FTK A+ LI + P +KPLFL
Sbjct: 134 YYSHERCTLIDALNVTRCALDFRDGEEVATGYKNMYSTNIFTKRAIALITNHPPEKPLFL 193
Query: 271 YLAHLAAHAGNAGKHLEAPQETINQFQYITDPNRRTYAAMVKKLDDSVGTVISALQRKGM 330
YLA + H + L+ P+E + + +I D NR YA MV +D++VG V +AL+ G+
Sbjct: 194 YLALQSVH-----EPLQVPEEYLKPYDFIQDKNRHHYAGMVSLMDEAVGNVTAALKSSGL 248
Query: 331 LENSIIIFMSDNGAPTVEYRETSNYRNWGSNYPYRGVKNTLWEGGVKVPAILWSPQIQQN 390
N++ IF +DN G+N+P RG K +LWEGGV+ + SP ++Q
Sbjct: 249 WNNTVFIFSTDN---------GGQTLAGGNNWPLRGRKWSLWEGGVRGVGFVASPLLKQK 299
Query: 391 PRVSLQMMHISDWLPTLYTAAGGDTSRLPLNIDGLDQWSSLLLNTPSRRNSNIDGLDQWS 450
+ +++HISDWLPTL A G T+ +DG D W ++ +PS R + +D
Sbjct: 300 GVKNRELIHISDWLPTLVKLARGHTNG-TKPLDGFDVWKTISEGSPSPRIELLHNIDPN- 357
Query: 451 SLLLNTPSRRNSVLINIDEKKRT----------AAVRLDSWKLVLGTQENGTMDGYYGQT 500
+ ++P RNS+ D+ AA+R +WKL+ G G Q
Sbjct: 358 -FVDSSPCPRNSMAPAKDDSSLPEYSAFNTSVHAAIRHGNWKLLTGYPGCGYWFPPPSQY 416
Query: 501 RSNKVPLLNFNAIVESKTYQSLQQLSQNIFLPISNIDKMRSTRQQATIHCGANPAPMTPS 560
N + + S
Sbjct: 417 ----------------------------------------------------NVSEIPSS 424
Query: 561 PCTNGPCYLFNLGNDPCEQNNIASSRPDISSQLYELLKYHRRTLVPQSHEQPDLVQADPK 620
+LF++ DP E+++++ P I ++L L+++ + VP D + DPK
Sbjct: 425 DPPTKTLWLFDIDRDPEERHDLSREYPHIVTKLLSRLQFYHKHSVPVYFPAQD-PRCDPK 483
Query: 621 RFNDTWSPWI 630
W PW+
Sbjct: 484 -ATGVWGPWM 492
>d1hdha_ c.76.1.2 (A:) Arylsulfatase B (4-sulfatase) {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 525
Score = 153 bits (386), Expect = 1e-40
Identities = 107/486 (22%), Positives = 166/486 (34%), Gaps = 102/486 (20%)
Query: 92 GWNDLSFHGSNEIPTPNIDALAYNGIILNNMYAQPVCTPSRASLMTGKYPIHTGMQGPPI 151
G++D+ G EI TPN+DALA G+ L + + +P+R+ L+TG G+
Sbjct: 14 GFSDIGAFG-GEIATPNLDALAIAGLRLTDFHTASTGSPTRSMLLTGTDHHIAGIGTMAE 72
Query: 152 WGAEPR--------GVPLTERFLPEYLRELGYSTKAIGKWHLGFFRREYTPLYRGFESHF 203
+ LPE LRE GY T GKWHL + E TP RGFE F
Sbjct: 73 ALTPELEGKPGYEGHLNERVVALPELLREAGYQTLMAGKWHL-GLKPEQTPHARGFERSF 131
Query: 204 GYLNGVISYYDHILSDQYSRTVELNG---HDMRRNLSTAWDTVGEYATDLFTKEAVQLIE 260
L G ++Y S L G + G Y++D F + +Q ++
Sbjct: 132 SLLPGAANHYGFEPPYDESTPRILKGTPALYVEDERYLDTLPEGFYSSDAFGDKLLQYLK 191
Query: 261 DQPVDKPLFLYLAHLA-------------------------------------------A 277
++ +P F YL A
Sbjct: 192 ERDQSRPFFAYLPFSAPHWPLQAPREIVEKYRGRYDAGPEALRQERLARLKELGLVEADV 251
Query: 278 HAGNAGKHLEAPQETINQFQYITDPNRRTYAAMVKKLDDSVGTVISALQRKGMLENSIII 337
A + ++ + + YAAMV+++D ++G V+ L+R+G L+N+ ++
Sbjct: 252 EAHPVLALTREWEALEDEERAKSARAMEVYAAMVERMDWNIGRVVDYLRRQGELDNTFVL 311
Query: 338 FMSDNGAPTVE-------------------------------YRETSNYRNWGSNYPYRG 366
FMSDNGA Y + P R
Sbjct: 312 FMSDNGAEGALLEAFPKFGPDLLGFLDRHYDNSLENIGRANSYVWYGPRWAQAATAPSRL 371
Query: 367 VKNTLWEGGVKVPAILWSPQIQQNPRVSLQMMHISDWLPTLYTAAGGDTSRLPLNIDGLD 426
K +GG++VPA++ P++ + +S + D PTL AG G +
Sbjct: 372 YKAFTTQGGIRVPALVRYPRLSRQGAISHAFATVMDVTPTLLDLAGVRHP--GKRWRGRE 429
Query: 427 QWSSLLLNTPSRRNSNIDGLDQWSSLLLNTPSRRNSVLINIDEKKRTAAVRLDSWKLVLG 486
G L T + + + E A+R WK V
Sbjct: 430 IA-------------EPRGRSWLGWLSGETEAAHDENTVTGWELFGMRAIRQGDWKAVYL 476
Query: 487 TQENGT 492
G
Sbjct: 477 PAPVGP 482
>d1auka_ c.76.1.2 (A:) Arylsulfatase A {Human (Homo sapiens) [TaxId:
9606]}
Length = 485
Score = 148 bits (373), Expect = 4e-39
Identities = 102/418 (24%), Positives = 149/418 (35%), Gaps = 31/418 (7%)
Query: 92 GWNDLSFHGSNEIPTPNIDALAYNGIILNNMYAQ-PVCTPSRASLMTGKYPIHTGMQGPP 150
G+ DL +G TPN+D LA G+ + Y + TPSRA+L+TG+ P+ GM
Sbjct: 14 GYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLGTPSRAALLTGRLPVRMGMYPGV 73
Query: 151 IWGAEPRGVPLTERFLPEYLRELGYSTKAIGKWHLGFFRR-EYTPLYRGFESHFGYLNGV 209
+ + G+PL E + E L GY T GKWHLG + P ++GF G
Sbjct: 74 LVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLGIPYSH 133
Query: 210 ISYYDHILSDQYSRTVELNGHDMRRNLSTAWDTVGEYATDLFTKEAVQLIEDQPVDKPLF 269
L+ T G D + A + D
Sbjct: 134 DQGPCQNLTCFPPATPCDGGCDQGLVPIPLLANLSVEAQPPWLPGLEARYMAFAHDLMAD 193
Query: 270 LYLAHLAAHAGNAGKHLEAPQETINQFQYITDPNRRTYAAMVKKLDDSVGTVISALQRKG 329
A H + + R + + +LD +VGT+++A+ G
Sbjct: 194 AQRQDRPFFLYYASHH--THYPQFSGQSFAERSGRGPFGDSLMELDAAVGTLMTAIGDLG 251
Query: 330 MLENSIIIFMSDNGAPTVEYRETSNYRNWGSNYPYRGVKNTLWEGGVKVPAILWSPQIQQ 389
+LE +++IF +DN ET G + R K T +EGGV+ PA+
Sbjct: 252 LLEETLVIFTADN------GPETMRMSRGGCSGLLRCGKGTTYEGGVREPAL-AFWPGHI 304
Query: 390 NPRVSLQMMHISDWLPTLYTAAGGDTSRLPLNIDGLDQWSSLLLNTPSRRNSNIDGLDQW 449
P V+ ++ D LPTL AG + L+ D LL S R S
Sbjct: 305 APGVTHELASSLDLLPTLAALAGAPLPNVTLDG--FDLSPLLLGTGKSPRQSLFFYPSYP 362
Query: 450 SSLLLNTPSRRNSVLINIDEKKRTAAVRLDSWKLVLGTQENGTMDGYYGQTRSNKVPL 507
DE + AVR +K TQ + D L
Sbjct: 363 ------------------DEVRGVFAVRTGKYKAHFFTQGSAHSDTTADPACHASSSL 402
Score = 39.8 bits (91), Expect = 9e-04
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 12/72 (16%)
Query: 563 TNGPCYLFNLGNDPCEQNN----IASSRPDISSQLYELLKYHRRTLVPQSHEQPDLVQAD 618
+ P L++L DP E N +A + P++ L +L + V
Sbjct: 404 AHEPPLLYDLSKDPGENYNLLGGVAGATPEVLQALKQLQLLKAQL--------DAAVTFG 455
Query: 619 PKRFNDTWSPWI 630
P + P +
Sbjct: 456 PSQVARGEDPAL 467
>d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 553
Score = 144 bits (363), Expect = 2e-37
Identities = 89/372 (23%), Positives = 136/372 (36%), Gaps = 56/372 (15%)
Query: 92 GWNDLSFHGSNEIPTPNIDALAYNGIILNNMYAQ-PVCTPSRASLMTGKYPIHTGMQ--- 147
G D +G+ I TPNID LA G+ L A P+ TPSRA+ MTG+YP+ +GM
Sbjct: 16 GIGDPGCYGNKTIRTPNIDRLASGGVKLTQHLAASPLATPSRAAFMTGRYPVRSGMASWS 75
Query: 148 --GPPIWGAEPRGVPLTERFLPEYLRELGYSTKAIGKWHL-----GFFRREYTPLYRGFE 200
G ++ A G+P E + L++ GYST IGKWHL + PL+ GF
Sbjct: 76 RTGVFLFTASSGGLPTDEITFAKLLKDQGYSTALIGKWHLGMSCHSKTDFCHHPLHHGFN 135
Query: 201 SHFGYLNGVISYYDHILSDQYSRTVELNGHDMRRNLSTAWDTV--GEYATDLFTKEAVQL 258
+G + ++ + + + T+ L V
Sbjct: 136 YFYGISLTNLRDCKPGEGSVFTTGFKRLVFLPLQIVGVTLLTLAALNCLGLLHVPLGVFF 195
Query: 259 IEDQPVDKPLFLYLAHLAAHAGNAG----------------------------------- 283
L L+L L
Sbjct: 196 SLLFLAALILTLFLGFLHYFRPLNCFMMRNYEIIQQPMSYDNLTQRLTVEAAQFIQRNTE 255
Query: 284 -------KHLEAPQETINQFQYITDPNRRTYAAMVKKLDDSVGTVISALQRKGMLENSII 336
+L + + Y V+++D SVG +++ L + +++I
Sbjct: 256 TPFLLVLSYLHVHTALFSSKDFAGKSQHGVYGDAVEEMDWSVGQILNLLDELRLANDTLI 315
Query: 337 IFMSDNGAPTVEYRETSNYRNWGSNYPYRGVKNTLWEGGVKVPAILWSPQIQQNPRVSLQ 396
F SD GA E + GSN Y+G K WEGG++VP IL P++ Q + +
Sbjct: 316 YFTSDQGAHVEEVSSK-GEIHGGSNGIYKGGKANNWEGGIRVPGILRWPRVIQAGQKIDE 374
Query: 397 MMHISDWLPTLY 408
D PT+
Sbjct: 375 PTSNMDIFPTVA 386
>d2i09a1 c.76.1.5 (A:2-107,A:227-403) Phosphopentomutase DeoB
{Streptococcus mutans [TaxId: 1309]}
Length = 283
Score = 78.1 bits (191), Expect = 2e-16
Identities = 41/343 (11%), Positives = 82/343 (23%), Gaps = 75/343 (21%)
Query: 90 VYGWNDLSFHGSNEIPTPNIDALAYNGIILNNMYAQPVCTPSRASLMTGKYPIHTGMQGP 149
+ D + + +P D L + + P+ A + G P T ++
Sbjct: 16 IGAAPDANNFSNAGVPDGASDTLG------HISKTVGLNVPNMAKIGLGNIPRDTPLKTV 69
Query: 150 PIWGAEPRGVPLTERFLPEYLRELGYSTKAIGKWHLGFFRREYTPLYRGFESHFGYLNGV 209
P T LG T G W + + + GV
Sbjct: 70 ------PAENHPTGYVTKLEEVSLGKDT-MTGHWEIMGLNITEPSPFAPTVLNKLADAGV 122
Query: 210 ISYYDHILSDQYSRTVELNGHDMRRNLSTAWDTVGEYATDLFTKEAVQLIEDQPVDKPLF 269
+Y ++D ++ D + ++ +
Sbjct: 123 STYAVGKINDIFN------------GSGITNDMGHNKSNSHGVDTLIKTMGL---SAFTK 167
Query: 270 LYLAHLAAHAGNAGKHLEAPQETINQFQYITDPNRRTYAAMVKKLDDSVGTVISALQRKG 329
+ H N Y + + D+ + +I+A++
Sbjct: 168 GFSFTNLVDFDALYGH---------------RRNAHGYRDCLHEFDERLPEIIAAMKVDD 212
Query: 330 MLENSIIIFMSDNGAPTVEYRETSNYRNWGSNYPYRGVKNTLWEGGVKVPAILWSPQIQQ 389
+L + A T VP + +SP
Sbjct: 213 LLLITADHGNDPTYAGT-------------------------DHTREYVPLLAYSPSFT- 246
Query: 390 NPRVSLQMMHISDWLPTLYTAAGGDTSRLPLNIDGLDQWSSLL 432
L + H +D T+ G + + G L+
Sbjct: 247 -GNGVLPVGHYADISATIADNFG-----VDTAMIGESFLDKLI 283
>d1ei6a_ c.76.1.4 (A:) Phosphonoacetate hydrolase {Pseudomonas
fluorescens [TaxId: 294]}
Length = 406
Score = 61.4 bits (147), Expect = 1e-10
Identities = 27/237 (11%), Positives = 60/237 (25%), Gaps = 8/237 (3%)
Query: 68 ITDPNRRTYAALTKSTTLTLLIVYGWNDLSFHGSNEIPTPNIDALAYNGIILNNMYAQP- 126
+ N R+Y + T + + + P + L G +L P
Sbjct: 3 LISVNSRSYRLSSAPTIVICVDGCEQ-EYINQAIQAGQAPFLAELTGFGTVLTGDCVVPS 61
Query: 127 VCTPSRASLMTGKYPIHTGMQGPPIWGAEPRGVPLTERFLPEYLRELGYSTKAIGKWHLG 186
P+ S++TG P G+ G + T+ + + + + +
Sbjct: 62 FTNPNNLSIVTGAPPSVHGICGNFFF------DQETQEEVLMNDAKYLRAPTILAEMAKA 115
Query: 187 FFRREYTPLYRGFESHFGYLNGVISYYDHILSDQYSRTVELNGHDMRRNLSTAWDTVGEY 246
+ G+ I + + R + +
Sbjct: 116 GQLVAVVTAKDKLRNLLGHQLKGICFSAEKADQVNLEEHGVENILARVGMPVPSVYSADL 175
Query: 247 ATDLFTKEAVQLIEDQPVDKPLFLYLAHLAAHAGNAGKHLEAPQETINQFQYITDPN 303
+ +F L ++P L HA + + F+ +
Sbjct: 176 SEFVFAAGLSLLTNERPDFMYLSTTDYVQHKHAPGTPEANAFYAMMDSYFKRYHEQG 232
>d1o98a2 c.76.1.3 (A:2-76,A:311-510)
2,3-Bisphosphoglycerate-independent phosphoglycerate
mutase, catalytic domain {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 275
Score = 59.3 bits (142), Expect = 3e-10
Identities = 44/350 (12%), Positives = 69/350 (19%), Gaps = 84/350 (24%)
Query: 87 LLIV--YGWNDLSFHGSNE-IPTPNIDALAYNGIILNNMYAQPVCTPSRASLMTGKYPIH 143
L+I+ + D ++ + PN D P T G
Sbjct: 7 LIILDGFALRDETYGNAVAQANKPNFDRYWNEY---------PHTTLKACGEAVGLPEGQ 57
Query: 144 TGMQGPPIWGAEPRGVPLTERFLPEYLRELGYSTKAIGKWHLGFFRREYTPLYRGFESHF 203
G +G G L E P F S
Sbjct: 58 MGNSEVGHLNIGAG-----RIVYTNLDNTIGEVLSQHGLRQLRIAETEKYPHVTFFMSGG 112
Query: 204 GYLNGVISYYDHILSDQYSRTVELNGHDMRRNLSTAWDTVGEYATDLFTKEAVQLIEDQP 263
I S +
Sbjct: 113 REEEFPGEDRILINSPKVPTYDLKPEMSAYEVTDALL----------------------- 149
Query: 264 VDKPLFLYLAHLAAHAGNAGKHLEAPQETINQFQYITDPNRRTYAAMVKKLDDSVGTVIS 323
A K+ N V+ +D+ +G V+
Sbjct: 150 --------------KEIEADKYDAIILNYANPDMVGHSGKLEPTIKAVEAVDECLGKVVD 195
Query: 324 ALQRKGMLENSIIIFMSDNGAPTVEYRETSNYRNWGSNYPYRGVKNTLWEGGVKVPAILW 383
A+ KG + + + T + K VP I+
Sbjct: 196 AILAKGGIAIITADHGNADEVLTPDG------------------KPQTAHTTNPVPVIVT 237
Query: 384 SPQIQQNPRVSLQMMHISDWLPTLYTAAGGDTSRLPLNIDGLDQWSSLLL 433
I+ L D PT+ G P + G SL++
Sbjct: 238 KKGIKLRDGGIL-----GDLAPTMLDLLGLPQ---PKEMTG----KSLIV 275
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 26.7 bits (59), Expect = 0.99
Identities = 6/21 (28%), Positives = 7/21 (33%), Gaps = 2/21 (9%)
Query: 549 HCGANPA--PMTPSPCTNGPC 567
C P P C +G C
Sbjct: 1 QCLVLPLEHPCASLCCGHGTC 21
>d2ebna_ c.1.8.5 (A:) Endo-beta-N-acetylglucosaminidase
{Flavobacterium meningosepticum, endoglycosidase F1
[TaxId: 238]}
Length = 285
Score = 27.0 bits (59), Expect = 6.0
Identities = 9/63 (14%), Positives = 20/63 (31%)
Query: 33 VDKPLFLYLAHLAAHAGNAGKHLEAPQETINQFQYITDPNRRTYAALTKSTTLTLLIVYG 92
KPL + +A+ + + Q++ + L +L + G
Sbjct: 30 SGKPLVDMVVLFSANINYDAANDKVFVSNNPNVQHLLTNRAKYLKPLQDKGIKVILSILG 89
Query: 93 WND 95
+D
Sbjct: 90 NHD 92
>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA,
domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 161
Score = 26.5 bits (58), Expect = 7.5
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 254 EAVQLIEDQPVDKPLFLYLAHL--AAHAGNAGKHLEAPQETINQFQYITDPNRRTYAAMV 311
E ++ + D DK + LY+ + K + + I ++ R ++
Sbjct: 63 ELMEYLADTEEDKAIALYIEGVRNGKKFMEVAKRVTKKKPIIALKAGKSESGARAASSHT 122
Query: 312 KKLDDSVGTVISALQRKGML 331
L S +A ++ G+L
Sbjct: 123 GSLAGSWKIYEAAFKQSGVL 142
>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase
oxygenase subunit TouA {Pseudomonas stutzeri [TaxId:
316]}
Length = 491
Score = 26.8 bits (59), Expect = 9.2
Identities = 7/37 (18%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 301 DPNR---RTYAAMVKKLDDSVGTVISALQRKGMLENS 334
+P + Y ++ ++ D ++ +AL+R G ++ +
Sbjct: 48 EPYKITYPEYVSIQREKDSGAYSIKAALERDGFVDRA 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.411
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,355,480
Number of extensions: 109737
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 21
Length of query: 632
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 541
Effective length of database: 1,158,166
Effective search space: 626567806
Effective search space used: 626567806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)