BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12302
(303 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 239 bits (611), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 108/165 (65%), Positives = 133/165 (80%), Gaps = 1/165 (0%)
Query: 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLS 196
+DV+ Y+DLGLP+RD T DQVT+D+A+A +K++V +KCATITPDEARV+EFKLKKMW S
Sbjct: 36 VDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKS 95
Query: 197 PNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVEL 256
PNGTIRNILGGTVFREPIICKNIP++VPGWT I IGRHAHGDQYKATD +VD+ G ++
Sbjct: 96 PNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKI 155
Query: 257 VYTDNQG-KVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVS 300
V+T G + ++V+ F GV + MYNT ESI FAHS FQ +
Sbjct: 156 VFTPKDGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYA 200
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 30/39 (76%)
Query: 34 DSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCM 72
D RI PVVEMDGDEMTRIIW+ IKEKLI P+V V +
Sbjct: 2 DQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQL 40
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 234 bits (596), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 110/173 (63%), Positives = 134/173 (77%), Gaps = 3/173 (1%)
Query: 131 QIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKL 190
++I +DV+ YYDL + RDAT D++T DAA AIKK+ VGIKCATITPDEARVKEF L
Sbjct: 44 KLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDEARVKEFNL 103
Query: 191 KKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDK 250
KMW SPNGTIRNILGGTVFREPI+ IP++VP W I+IGRHAHGDQYKATD ++
Sbjct: 104 HKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPG 163
Query: 251 PGKVELVYTDNQ---GKVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVS 300
PG +ELVY + + QT KV+++K GVA+AMYNT ESIE FAHSSF+++
Sbjct: 164 PGSLELVYKPSDPTTAQPQTLKVYDYKGSGVAMAMYNTDESIEGFAHSSFKLA 216
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 35 SRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCM 72
S+I K PVVE+DGDEMTRIIW+ IK+KLI PY+ V +
Sbjct: 17 SKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDL 54
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T09|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T0L|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|D Chain D, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
Length = 414
Score = 231 bits (588), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 109/167 (65%), Positives = 133/167 (79%), Gaps = 2/167 (1%)
Query: 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLS 196
++++ YDLG+ +RDAT DQVT DAA AIKKHNVG+KCATITPDE RV+EFKLK+MW S
Sbjct: 35 VELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDEKRVEEFKLKQMWKS 94
Query: 197 PNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVEL 256
PNGTIRNILGGTVFRE IICKNIP++V GW I+IGRHA+GDQY+ATD +V PGKVE+
Sbjct: 95 PNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEI 154
Query: 257 VYTDNQGKVQ-TFKVFEF-KTPGVALAMYNTTESIESFAHSSFQVSF 301
YT + G + T+ V F + GVA+ MYN +SIE FAHSSFQ++
Sbjct: 155 TYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMAL 201
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 30/36 (83%)
Query: 35 SRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKV 70
S+ ++ VVEM GDEMTRIIWE IKEKLIFPYV++
Sbjct: 2 SKKISGGSVVEMQGDEMTRIIWELIKEKLIFPYVEL 37
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 419
Score = 230 bits (587), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 110/173 (63%), Positives = 136/173 (78%), Gaps = 2/173 (1%)
Query: 131 QIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKL 190
++I ++++ YDLG+ +RDAT DQVT DAA AIKKHNVG+KCATITPDE RV+EFKL
Sbjct: 34 KLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDEKRVEEFKL 93
Query: 191 KKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDK 250
K+MW SPNGTIRNILGGTVFRE IICKNIP++V GW I+IGRHA+GDQY+ATD +V
Sbjct: 94 KQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPG 153
Query: 251 PGKVELVYTDNQGKVQ-TFKVFEF-KTPGVALAMYNTTESIESFAHSSFQVSF 301
PGKVE+ YT + G + T+ V F + GVA+ MYN +SIE FAHSSFQ++
Sbjct: 154 PGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMAL 206
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 30/36 (83%)
Query: 35 SRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKV 70
S+ ++ VVEM GDEMTRIIWE IKEKLIFPYV++
Sbjct: 7 SKKISGGSVVEMQGDEMTRIIWELIKEKLIFPYVEL 42
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMJ|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMV|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
pdb|2CMV|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
Length = 410
Score = 228 bits (582), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 109/173 (63%), Positives = 136/173 (78%), Gaps = 2/173 (1%)
Query: 131 QIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKL 190
++I ++++ YDLG+ +RDAT DQVT DAA AIKK+NVG+KCATITPDE RV+EFKL
Sbjct: 26 KLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKL 85
Query: 191 KKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDK 250
K+MW SPNGTIRNILGGTVFRE IICKNIP++V GW I+IGRHA+GDQY+ATD +V
Sbjct: 86 KQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPG 145
Query: 251 PGKVELVYTDNQGKVQ-TFKVFEF-KTPGVALAMYNTTESIESFAHSSFQVSF 301
PGKVE+ YT G + T+ V +F + GVA+ MYN +SIE FAHSSFQ++
Sbjct: 146 PGKVEITYTPKDGTQKVTYMVHDFEEGGGVAMGMYNQDKSIEDFAHSSFQMAL 198
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 26/33 (78%)
Query: 38 VAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKV 70
+ VVEM GDEMTRIIWE IKEKLI PYV++
Sbjct: 2 IQGGSVVEMQGDEMTRIIWELIKEKLILPYVEL 34
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
Length = 425
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 108/167 (64%), Positives = 132/167 (79%), Gaps = 2/167 (1%)
Query: 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLS 196
++++ YDLG+ +RDAT DQVT DAA AIKKHNVG+KCATITPDE RV+EFKLK+MW S
Sbjct: 35 VELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDEKRVEEFKLKQMWKS 94
Query: 197 PNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVEL 256
PNGTIRNILGGTVFRE IICKNIP++V GW I+IG HA+GDQY+ATD +V PGKVE+
Sbjct: 95 PNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGHHAYGDQYRATDFVVPGPGKVEI 154
Query: 257 VYTDNQGKVQ-TFKVFEF-KTPGVALAMYNTTESIESFAHSSFQVSF 301
YT + G + T+ V F + GVA+ MYN +SIE FAHSSFQ++
Sbjct: 155 TYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMAL 201
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 30/36 (83%)
Query: 35 SRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKV 70
S+ ++ VVEM GDEMTRIIWE IKEKLIFPYV++
Sbjct: 2 SKKISGGSVVEMQGDEMTRIIWELIKEKLIFPYVEL 37
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAP|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAR|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAR|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAS|A Chain A, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 422
Score = 228 bits (581), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 108/167 (64%), Positives = 132/167 (79%), Gaps = 2/167 (1%)
Query: 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLS 196
++++ YDLG+ +RDAT DQVT DAA AIKKHNVG+KCATITPDE RV+EFKLK+MW S
Sbjct: 35 VELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDEKRVEEFKLKQMWKS 94
Query: 197 PNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVEL 256
PNGTIRNILGGTVFRE IICKNIP++V GW I+IG HA+GDQY+ATD +V PGKVE+
Sbjct: 95 PNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGHHAYGDQYRATDFVVPGPGKVEI 154
Query: 257 VYTDNQGKVQ-TFKVFEF-KTPGVALAMYNTTESIESFAHSSFQVSF 301
YT + G + T+ V F + GVA+ MYN +SIE FAHSSFQ++
Sbjct: 155 TYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQMAL 201
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 30/36 (83%)
Query: 35 SRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKV 70
S+ ++ VVEM GDEMTRIIWE IKEKLIFPYV++
Sbjct: 2 SKKISGGSVVEMQGDEMTRIIWELIKEKLIFPYVEL 37
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
pdb|4HCX|B Chain B, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
Length = 409
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/169 (62%), Positives = 124/169 (73%), Gaps = 6/169 (3%)
Query: 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLS 196
+D+ YYDLG+ HRDAT+DQVT+DAA AIKKH VG+KCATITPDEARV+EF LKKMWLS
Sbjct: 38 LDIRLDYYDLGIEHRDATDDQVTIDAAYAIKKHGVGVKCATITPDEARVEEFNLKKMWLS 97
Query: 197 PNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVEL 256
PNGTIRNILGGT+FREPI+ N+P++VPGWT IVIGRHA GDQY+AT+ VD+PG V L
Sbjct: 98 PNGTIRNILGGTIFREPIVISNVPRLVPGWTKPIVIGRHAFGDQYRATNFKVDQPGTVTL 157
Query: 257 VYTDNQGKVQTFKVFEF----KTPGVALAMYNTTESIESFAHSSFQVSF 301
+T G V E + GV L MYN ESI FA +SF
Sbjct: 158 TFTPADGSAPI--VHEMVSIPEDGGVVLGMYNFKESIRDFARASFSYGL 204
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 36 RIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCM 72
+I PVVE+DGDEMTR+IW+ IK+ LI PY+ + +
Sbjct: 6 KIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRL 42
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3US8|B Chain B, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 427
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 100/171 (58%), Positives = 125/171 (73%)
Query: 131 QIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKL 190
++I +D++ YYDLG+ +RDAT+DQVT+DAA AIKKH VG+KCATITPDE RV+EFKL
Sbjct: 52 KLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPDEGRVEEFKL 111
Query: 191 KKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDK 250
KK W SPNGTIRNILGG +FREPIICKN+P++VPGWT I++GRHA GDQY+ATD
Sbjct: 112 KKXWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPG 171
Query: 251 PGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVSF 301
GK+ + + G+ V++ GVALA YN ESI FA +SF
Sbjct: 172 KGKLSIKFVGEDGQTIEHDVYDAPGAGVALAXYNLDESITEFARASFNYGL 222
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 35 SRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCM 72
++I NPVVE+DGDE TRIIW+ IK+KLI PY+ + +
Sbjct: 25 AKIKVANPVVELDGDEXTRIIWQFIKDKLIHPYLDLDL 62
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|B Chain B, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|C Chain C, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|D Chain D, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOU|A Chain A, Ctidh Bound To Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 90/165 (54%), Positives = 112/165 (67%)
Query: 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLS 196
I++ YYDLGL +RD TEDQVT+DAA AI+K+ VG+KCATITP+ RV+E+ LKKMW S
Sbjct: 35 IELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQRVEEYNLKKMWKS 94
Query: 197 PNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVEL 256
PNGTIR IL GTVFR PI+ +I V GW I I RHA+GD YK + V GK EL
Sbjct: 95 PNGTIRAILDGTVFRAPIVVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAEL 154
Query: 257 VYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVSF 301
V+T G+V + EF PGV + M+NT +SI SFA + F +
Sbjct: 155 VFTSENGEVSRQTIHEFDGPGVIMGMHNTDKSIRSFARACFNYAL 199
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 35 SRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKV 70
S+I K P+VEMDGDEMTRIIW IKE L+ PY+++
Sbjct: 2 SKIKMKVPLVEMDGDEMTRIIWRLIKENLLEPYIEL 37
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
pdb|1ZOR|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
Length = 399
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 117/165 (70%), Gaps = 2/165 (1%)
Query: 131 QIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKL 190
++I +D++ +Y+DLG+ RD T+DQ+T++AA AIKK+ VG+KCATITPD RVKE+ L
Sbjct: 29 KLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDAERVKEYNL 88
Query: 191 KKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDK 250
KK W SPN TIR L GTVFR+PI+ KN+P +V W I+IGRHA+GD Y A + V+
Sbjct: 89 KKAWKSPNATIRAYLDGTVFRKPIMVKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEG 148
Query: 251 PGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHS 295
P +VELV + + K T V +F+ GV +AM+N +SI SFA S
Sbjct: 149 PAEVELVVRNKENK--TLLVHKFEGNGVVMAMHNLEKSIRSFAQS 191
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 30/37 (81%)
Query: 36 RIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCM 72
++ KNP+VE+DGDEM R++W+ IKEKLI PY+ + +
Sbjct: 3 KVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQL 39
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|B Chain B, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|C Chain C, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|D Chain D, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXR|A Chain A, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|2UXR|B Chain B, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|4AOV|A Chain A, Dpidh-Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 170 bits (431), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 109/165 (66%)
Query: 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLS 196
ID++ YYDLG+ RD T DQ+T+DAA AIKK+ VG+K ATITP++ RV+E+ LK+ W S
Sbjct: 34 IDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDRVEEYGLKEQWKS 93
Query: 197 PNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVEL 256
PN T+R +L GTVFR+PI+ KNI V W IV+GRHA+GD YK ++ + GK+E+
Sbjct: 94 PNATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEI 153
Query: 257 VYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVSF 301
V TD GK + E P + ++NT SI FA + F+ S
Sbjct: 154 VVTDKNGKETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSL 198
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 28/35 (80%)
Query: 36 RIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKV 70
+I K P+VE+DGDEMTR++W IK+KL+ P++ +
Sbjct: 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDL 36
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 150 HRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTV 209
HRD D + + ++K + G CA ITP++++ E W++P R G V
Sbjct: 139 HRDIKSDNILLGMDGSVKLTDFGF-CAQITPEQSKRSEMVGTPYWMAPEVVTRKAYGPKV 197
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic
Glutamate Receptor-like Glurdelta2 In Complex With D-
Serine
Length = 265
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 147 GLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKM 193
G P D T + + + K+ ++GI TITPD V +F + M
Sbjct: 59 GSPQEDGTWNGLV--GELVFKRADIGISALTITPDRENVVDFTTRYM 103
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 150 HRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTV 209
HRD D + + ++K + G CA ITP++++ W++P R G V
Sbjct: 140 HRDIKSDNILLGMDGSVKLTDFGF-CAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKV 198
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 150 HRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTV 209
HRD D + + ++K + G CA ITP++++ W++P R G V
Sbjct: 139 HRDIKSDNILLGMDGSVKLTDFGF-CAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKV 197
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 150 HRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTV 209
HRD D + + ++K + G CA ITP++++ W++P R G V
Sbjct: 139 HRDIKSDNILLGMDGSVKLTDFGF-CAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKV 197
>pdb|4B4T|R Chain R, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 429
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 50 EMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIK 99
E + IKE+ + PY K + N Q+ L EKS+ +N EWIK
Sbjct: 45 EAAEFVLAKIKEEEMAPYYKYLCEEYLVNNGQSDLEHDEKSDSLN-EWIK 93
>pdb|3L3B|A Chain A, Crystal Structure Of Isoprenoid Biosynthesis Protein With
Amidotransferase-Like Domain From Ehrlichia Chaffeensis
At 1.90a Resolution
pdb|3L3B|B Chain B, Crystal Structure Of Isoprenoid Biosynthesis Protein With
Amidotransferase-Like Domain From Ehrlichia Chaffeensis
At 1.90a Resolution
Length = 242
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 147 GLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNIL 205
G H D +E + V + + +HNV KC ++ +V + K K+ G +RNIL
Sbjct: 32 GCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESV----GEVRNIL 86
>pdb|2V3T|A Chain A, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
pdb|2V3T|B Chain B, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
Length = 265
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 147 GLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLK 191
G P D T + + + K+ ++GI TITPD V +F +
Sbjct: 59 GSPQEDGTWNGLV--GELVFKRADIGISALTITPDRENVVDFTTR 101
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 150 HRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTV 209
HR+ D + + ++K + G CA ITP++++ W++P R G V
Sbjct: 140 HRNIKSDNILLGMDGSVKLTDFGF-CAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKV 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,019,367
Number of Sequences: 62578
Number of extensions: 368809
Number of successful extensions: 1016
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 980
Number of HSP's gapped (non-prelim): 35
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)