Query psy12302
Match_columns 303
No_of_seqs 191 out of 529
Neff 2.0
Searched_HMMs 46136
Date Fri Aug 16 15:32:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1526|consensus 100.0 2E-106 3E-111 757.8 16.2 202 32-302 10-212 (422)
2 PLN00096 isocitrate dehydrogen 100.0 5.1E-95 1.1E-99 684.1 17.6 187 43-302 1-191 (393)
3 PLN03065 isocitrate dehydrogen 100.0 5E-77 1.1E-81 573.0 15.2 202 32-302 69-271 (483)
4 PTZ00435 isocitrate dehydrogen 100.0 6.7E-56 1.4E-60 420.1 15.7 201 33-302 2-203 (413)
5 TIGR00127 nadp_idh_euk isocitr 100.0 8.7E-55 1.9E-59 412.1 15.4 199 35-302 1-201 (409)
6 COG0538 Icd Isocitrate dehydro 100.0 7.4E-53 1.6E-57 399.2 11.4 190 32-302 12-209 (407)
7 PLN00103 isocitrate dehydrogen 100.0 7.4E-41 1.6E-45 317.3 14.3 200 34-302 3-204 (410)
8 PRK08299 isocitrate dehydrogen 100.0 2.2E-34 4.7E-39 272.8 14.0 200 34-302 1-200 (402)
9 TIGR00183 prok_nadp_idh isocit 99.4 9.5E-13 2.1E-17 125.7 9.1 152 138-302 62-219 (416)
10 PRK06451 isocitrate dehydrogen 99.1 1E-10 2.3E-15 112.2 8.1 147 138-302 59-211 (412)
11 PRK07006 isocitrate dehydrogen 99.1 1.8E-10 3.8E-15 110.4 9.1 152 138-302 55-212 (409)
12 TIGR00175 mito_nad_idh isocitr 99.0 1.3E-09 2.9E-14 101.6 10.3 128 137-302 31-160 (333)
13 TIGR02088 LEU3_arch isopropylm 99.0 1.2E-09 2.7E-14 101.7 8.0 130 137-302 26-156 (322)
14 PF00180 Iso_dh: Isocitrate/is 98.8 1.6E-09 3.6E-14 100.5 2.8 133 137-302 31-175 (348)
15 PLN00118 isocitrate dehydrogen 98.6 2.5E-07 5.3E-12 88.4 9.9 129 137-302 69-199 (372)
16 PRK14025 multifunctional 3-iso 97.6 0.0002 4.2E-09 67.8 8.3 125 137-302 29-155 (330)
17 PRK03437 3-isopropylmalate deh 97.3 0.0011 2.3E-08 63.1 8.5 136 137-301 35-174 (344)
18 PRK08997 isocitrate dehydrogen 97.1 0.0027 5.9E-08 60.3 9.5 131 137-302 30-162 (334)
19 PLN00123 isocitrate dehydrogen 96.8 0.01 2.2E-07 57.2 10.4 123 138-302 59-183 (360)
20 TIGR00169 leuB 3-isopropylmala 96.8 0.0073 1.6E-07 57.6 9.3 139 137-302 31-178 (349)
21 PRK09222 isocitrate dehydrogen 96.7 0.0098 2.1E-07 59.3 9.4 128 138-302 33-164 (482)
22 TIGR02924 ICDH_alpha isocitrat 96.7 0.0073 1.6E-07 60.1 8.5 130 137-302 28-160 (473)
23 TIGR02089 TTC tartrate dehydro 96.6 0.014 3E-07 55.8 9.2 137 137-301 36-178 (352)
24 PRK00772 3-isopropylmalate deh 96.5 0.0099 2.1E-07 56.9 8.0 139 137-302 34-181 (358)
25 PRK08194 tartrate dehydrogenas 96.1 0.03 6.4E-07 53.7 8.6 133 137-301 36-175 (352)
26 PRK07362 isocitrate dehydrogen 94.9 0.12 2.6E-06 51.9 8.4 148 138-302 64-226 (474)
27 PLN02329 3-isopropylmalate deh 93.9 0.3 6.5E-06 48.1 8.5 138 138-301 79-225 (409)
28 COG0473 LeuB Isocitrate/isopro 91.2 0.9 2E-05 44.4 7.9 135 137-301 34-170 (348)
29 KOG0785|consensus 91.0 0.38 8.3E-06 47.2 5.1 99 138-247 64-163 (365)
30 KOG0784|consensus 89.6 0.6 1.3E-05 46.1 5.2 105 138-255 71-176 (375)
31 PRK03958 tRNA 2'-O-methylase; 42.9 36 0.00078 30.7 4.0 42 144-186 4-45 (176)
32 PF11491 DUF3213: Protein of u 37.5 18 0.00038 30.0 1.2 21 173-193 3-23 (88)
33 PF08770 SoxZ: Sulphur oxidati 35.7 69 0.0015 25.8 4.3 28 239-266 67-94 (100)
34 TIGR01617 arsC_related transcr 34.9 48 0.001 26.1 3.2 76 150-226 28-107 (117)
35 PF00609 DAGK_acc: Diacylglyce 34.9 39 0.00084 28.2 2.8 94 160-259 10-119 (161)
36 PF03960 ArsC: ArsC family; I 33.9 29 0.00064 26.9 1.8 68 150-218 25-95 (110)
37 PF00926 DHBP_synthase: 3,4-di 32.4 44 0.00094 30.1 2.9 98 156-263 33-131 (194)
38 COG1423 ATP-dependent DNA liga 29.5 22 0.00048 35.6 0.6 44 165-211 337-382 (382)
39 COG1635 THI4 Ribulose 1,5-bisp 28.8 48 0.001 31.9 2.7 83 144-253 90-176 (262)
40 COG4110 Uncharacterized protei 27.0 32 0.0007 31.7 1.2 29 40-68 80-120 (200)
41 smart00391 MBD Methyl-CpG bind 26.0 1.2E+02 0.0026 23.5 4.0 34 218-264 5-38 (77)
42 cd01396 MeCP2_MBD MeCP2, MBD1, 24.1 1.6E+02 0.0034 22.9 4.3 34 218-264 3-36 (77)
43 PF05523 FdtA: WxcM-like, C-te 23.1 1.6E+02 0.0035 24.2 4.5 51 233-287 47-102 (131)
44 TIGR00014 arsC arsenate reduct 21.3 99 0.0021 24.6 2.8 66 151-217 29-97 (114)
No 1
>KOG1526|consensus
Probab=100.00 E-value=1.5e-106 Score=757.76 Aligned_cols=202 Identities=71% Similarity=1.143 Sum_probs=198.4
Q ss_pred ccccceeecCCeEEecCcchhHHHHHHHHhhhcccchhhhhhhhhhhhhhhhhcCcchhhhhhhhhhhccccccchhhhh
Q psy12302 32 ATDSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKM 111 (303)
Q Consensus 32 ~~~~kI~v~nPvVemdGDEMTRiiw~~IkekLI~Pyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (303)
+.++||+|+||||||||||||||||+.||||||+|||
T Consensus 10 ~~~~kikv~~pvVemdGDEmTRiIW~~Ik~KLIlPyl------------------------------------------- 46 (422)
T KOG1526|consen 10 SGMSKIKVANPVVEMDGDEMTRIIWKLIKEKLILPYL------------------------------------------- 46 (422)
T ss_pred chhceeeccCCeEEecccHHHHHHHHHHHhhccccee-------------------------------------------
Confidence 3478999999999999999999999999999999999
Q ss_pred hhhhcccccchhhhhhhhhhhhccccccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcc
Q psy12302 112 FFLSSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLK 191 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~q~i~~~iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LK 191 (303)
|++++|||||++|||+||||||+|||+|++|||||||||||||||+||+||+||
T Consensus 47 --------------------------dldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITPDEaRv~Ef~Lk 100 (422)
T KOG1526|consen 47 --------------------------DLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITPDEARVEEFNLK 100 (422)
T ss_pred --------------------------eeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCCcHHHHHHhhhH
Confidence 999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhhhhhhcCCeEeecceeecCCCCCCCCcccceEEEeeccCccccceeeEecCCceEEEEEEcCCC-ceEEEEE
Q psy12302 192 KMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQG-KVQTFKV 270 (303)
Q Consensus 192 kmw~SPNGtIRniLgGTVFRePIi~knIp~iVpgW~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g-~~~~~~v 270 (303)
|||+||||||||||||||||||||||||||+||||++||+||||||||||||||++++|||+++|+|+|.+| .+.+++|
T Consensus 101 kMWkSPNGTIRNILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~~dg~~~~~~~V 180 (422)
T KOG1526|consen 101 KMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTPSDGTQKVTLKV 180 (422)
T ss_pred HHhcCCCcchhhhcCceeeccceecCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEecCCCCcceeEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 5889999
Q ss_pred EeecCCCeEEEeccChhhHHHHHHHhhhchhc
Q psy12302 271 FEFKTPGVALAMYNTTESIESFAHSSFQVSFI 302 (303)
Q Consensus 271 ~~fk~~GVal~myNt~eSI~~FAhs~Fq~al~ 302 (303)
|+|+++|++++|||+++||++|||||||+||.
T Consensus 181 ~~f~~~G~~~~m~~~dds~~~FAhssf~~Al~ 212 (422)
T KOG1526|consen 181 YDFKGSGVAAMMYNTDDSIRGFAHSSFQYALQ 212 (422)
T ss_pred EecCCCceeEEEeeccchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999985
No 2
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=5.1e-95 Score=684.12 Aligned_cols=187 Identities=30% Similarity=0.414 Sum_probs=183.1
Q ss_pred eEEecCcchhHHHHHHHHhhhcccchhhhhhhhhhhhhhhhhcCcchhhhhhhhhhhccccccchhhhhhhhhcccccch
Q psy12302 43 VVEMDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKMFFLSSSLKHGF 122 (303)
Q Consensus 43 vVemdGDEMTRiiw~~IkekLI~Pyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (303)
+|||||||||||||+.||+|||+|||
T Consensus 1 ~v~~~gdemtr~~~~~i~~~li~p~~------------------------------------------------------ 26 (393)
T PLN00096 1 MVYVAGEEMTRYTMDLILAKWIEPHV------------------------------------------------------ 26 (393)
T ss_pred CeeecchHHHHHHHHHHHHhhcccee------------------------------------------------------
Confidence 59999999999999999999999999
Q ss_pred hhhhhhhhhhhccccccc-cceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhh
Q psy12302 123 MYFMASRIQIISNIIDVE-CLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTI 201 (303)
Q Consensus 123 ~~~~~~~~q~i~~~iDv~-~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtI 201 (303)
|++ ++|||||++|||+||||||+|||+||||||||||||||||||+|||||+|||||+||||||
T Consensus 27 ---------------d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e~~lk~~w~sPNgti 91 (393)
T PLN00096 27 ---------------DTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKRLGLKKAWGSPNGAM 91 (393)
T ss_pred ---------------ccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHhhchhhhcCCCcHHH
Confidence 996 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCC-eEeecceeecCCCCCCCCcccceEEEeeccCccccceeeEecCCceEEEEEEcCCC-ceEEEEEEeec-CCCe
Q psy12302 202 RNILGG-TVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQG-KVQTFKVFEFK-TPGV 278 (303)
Q Consensus 202 RniLgG-TVFRePIi~knIp~iVpgW~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g-~~~~~~v~~fk-~~GV 278 (303)
|||||| |||||||+|+||| |||++||+|||||||||||| |++++|||++||+|||++| ++++++||+|+ ++||
T Consensus 92 R~~l~G~tvfR~pi~~~~i~---~~w~kpi~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~~~~~~~f~~~~gv 167 (393)
T PLN00096 92 RRGWNGITISRDTIHIDGVE---LGYKKPVFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPIVVDDRTITDDLNA 167 (393)
T ss_pred HhhcCCceEeeCCEecCCCC---CCccCceEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCceEEEEEecCCCCeE
Confidence 999999 9999999999996 99999999999999999999 9999999999999999877 79999999999 7999
Q ss_pred EEEeccChhhHHHHHHHhhhchhc
Q psy12302 279 ALAMYNTTESIESFAHSSFQVSFI 302 (303)
Q Consensus 279 al~myNt~eSI~~FAhs~Fq~al~ 302 (303)
+|+||||++||+.|||+||++|+.
T Consensus 168 ~~~~~N~~~si~RiAr~AF~~A~~ 191 (393)
T PLN00096 168 VVTYHNPLDNVHHLARIFFGRCLD 191 (393)
T ss_pred EEEeccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999975
No 3
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=5e-77 Score=572.96 Aligned_cols=202 Identities=63% Similarity=1.087 Sum_probs=196.7
Q ss_pred ccccceeecCCeEEecCcchhHHHHHHHHhhhcccchhhhhhhhhhhhhhhhhcCcchhhhhhhhhhhccccccchhhhh
Q psy12302 32 ATDSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKM 111 (303)
Q Consensus 32 ~~~~kI~v~nPvVemdGDEMTRiiw~~IkekLI~Pyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (303)
++++||+|+|||||||||||||+||+.|||+||+||+
T Consensus 69 ~~~~ki~~~~piv~~~GDem~r~i~~~i~~~li~p~~------------------------------------------- 105 (483)
T PLN03065 69 AAADRIKVQNPIVEMDGDEMTRVIWQMIKDKLIFPYL------------------------------------------- 105 (483)
T ss_pred hhhccccccCCeEEecCCcchHHHHHHHHHHHhcCCC-------------------------------------------
Confidence 3478999999999999999999999999999999999
Q ss_pred hhhhcccccchhhhhhhhhhhhccccccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcc
Q psy12302 112 FFLSSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLK 191 (303)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~q~i~~~iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LK 191 (303)
|++++|||||+++||+|+||||.||++|||||+||||||||||+++||+||+||
T Consensus 106 --------------------------di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~~rv~e~~lk 159 (483)
T PLN03065 106 --------------------------DLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLK 159 (483)
T ss_pred --------------------------CceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhhhhhhcCCeEeecceeecCCCCCCCCcccceEEEeeccCccccceeeEecCCceEEEEEEcCCC-ceEEEEE
Q psy12302 192 KMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQG-KVQTFKV 270 (303)
Q Consensus 192 kmw~SPNGtIRniLgGTVFRePIi~knIp~iVpgW~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g-~~~~~~v 270 (303)
|||+||||||||+||||+||+||+|+|||+++|||++||+|||||+||||+++|+++.||||+||+||+++| ..++.+|
T Consensus 160 ~~w~SpN~tiR~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEnte~~~e~~v 239 (483)
T PLN03065 160 SMWRSPNGTIRNILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDV 239 (483)
T ss_pred cccCCccHHHHHHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCCCCCcceeEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999877 4677889
Q ss_pred EeecCCCeEEEeccChhhHHHHHHHhhhchhc
Q psy12302 271 FEFKTPGVALAMYNTTESIESFAHSSFQVSFI 302 (303)
Q Consensus 271 ~~fk~~GVal~myNt~eSI~~FAhs~Fq~al~ 302 (303)
++|+++||+++||||++||+.|||+||+||+.
T Consensus 240 ~~f~~~gva~~~~nT~~sieriAr~AF~yA~~ 271 (483)
T PLN03065 240 YDFKGPGVALAMYNVDESIRAFAESSMAMALQ 271 (483)
T ss_pred eccCCCCeEEEEEECHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999974
No 4
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=6.7e-56 Score=420.11 Aligned_cols=201 Identities=71% Similarity=1.131 Sum_probs=196.5
Q ss_pred cccceeecCCeEEecCcchhHHHHHHHHhhhcccchhhhhhhhhhhhhhhhhcCcchhhhhhhhhhhccccccchhhhhh
Q psy12302 33 TDSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKMF 112 (303)
Q Consensus 33 ~~~kI~v~nPvVemdGDEMTRiiw~~IkekLI~Pyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (303)
++.+|+|++|+||||||||||++|++||+|||+||+
T Consensus 2 ~~~~~~~~~~~v~~~~~em~~~~~~~~~~~~~~~~~-------------------------------------------- 37 (413)
T PTZ00435 2 TGGKIKVKNPVVELDGDEMTRIIWKMIKEKLILPYL-------------------------------------------- 37 (413)
T ss_pred CcccccccCCeEEecccHHHHHHHHHHHHhhccCCC--------------------------------------------
Confidence 568999999999999999999999999999999999
Q ss_pred hhhcccccchhhhhhhhhhhhccccccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhccc
Q psy12302 113 FLSSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKK 192 (303)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~q~i~~~iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKk 192 (303)
|+++.|||+|.++|+.|+|+++.||++|+|+++|++|||++||+..|+++|+|||
T Consensus 38 -------------------------~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~~~~~~~~~l~~ 92 (413)
T PTZ00435 38 -------------------------DVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPDEARVKEFNLKK 92 (413)
T ss_pred -------------------------CceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCcccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCchhhhhhhcCCeEeecceeecCCCCCCCCcccceEEEeeccCccccceeeEecCCceEEEEEEcCCC-ceEEEEEE
Q psy12302 193 MWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQG-KVQTFKVF 271 (303)
Q Consensus 193 mw~SPNGtIRniLgGTVFRePIi~knIp~iVpgW~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g-~~~~~~v~ 271 (303)
+|+|||+++|+.||++++++||++|+||+++|||..||+++|||+||+|++.|+++..+|+.|.+|++.+| ++++..++
T Consensus 93 ~~~S~n~~LR~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~~g~~~~~~~~~ 172 (413)
T PTZ00435 93 MWKSPNGTIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPADGSEPQRVDVF 172 (413)
T ss_pred ccCCchHHHHHHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCEEEEEEecCCCCcceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999966 78999999
Q ss_pred eecCCCeEEEeccChhhHHHHHHHhhhchhc
Q psy12302 272 EFKTPGVALAMYNTTESIESFAHSSFQVSFI 302 (303)
Q Consensus 272 ~fk~~GVal~myNt~eSI~~FAhs~Fq~al~ 302 (303)
+|..+|++++++||.++++.+||.+|++|..
T Consensus 173 ~~~~~~v~~~~~~Tr~~~eRIar~AF~~A~~ 203 (413)
T PTZ00435 173 DFKGGGVAMGMYNTDESIEGFARSCFQYALD 203 (413)
T ss_pred ccCCCCeeEEEEeCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999974
No 5
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=8.7e-55 Score=412.10 Aligned_cols=199 Identities=73% Similarity=1.182 Sum_probs=191.7
Q ss_pred cceeecCCeEEecCcchhHHHHHHHHhhhcccchhhhhhhhhhhhhhhhhcCcchhhhhhhhhhhccccccchhhhhhhh
Q psy12302 35 SRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKMFFL 114 (303)
Q Consensus 35 ~kI~v~nPvVemdGDEMTRiiw~~IkekLI~Pyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (303)
+||+|.+|+|||||||||||+|+.||||||+||+
T Consensus 1 ~~~~~~~p~v~~~g~em~~~~~~~~~~~~~~~~~---------------------------------------------- 34 (409)
T TIGR00127 1 SKIKVANPVVEMDGDEMTRIIWELIKDKLILPYV---------------------------------------------- 34 (409)
T ss_pred CCccccCCeEEecCcHHHHHHHHHHHHhhccCCc----------------------------------------------
Confidence 5899999999999999999999999999999999
Q ss_pred hcccccchhhhhhhhhhhhccccccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhccccc
Q psy12302 115 SSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMW 194 (303)
Q Consensus 115 ~~~~~~~~~~~~~~~~q~i~~~iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw 194 (303)
|+++.|||+|.++|+.|+|+++.||++|+|+|+|++|||++||+..||++|.|||+|
T Consensus 35 -----------------------~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~~~~~~~l~k~~ 91 (409)
T TIGR00127 35 -----------------------ELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEARVEEFKLKKMW 91 (409)
T ss_pred -----------------------CceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCcccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhhcCCeEeecceeecCCCCCCCCcccceEEEeeccCccccceeeEecCCceEEEEEEcCCC-ceEEEEEEee
Q psy12302 195 LSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQG-KVQTFKVFEF 273 (303)
Q Consensus 195 ~SPNGtIRniLgGTVFRePIi~knIp~iVpgW~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g-~~~~~~v~~f 273 (303)
+|||++||+.||++++++||+++||++++|||.+||+|+|||.||+|.+.|+++.++|++|..|++.+| .+++..+++|
T Consensus 92 ~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~~~~~~~~~~~~ 171 (409)
T TIGR00127 92 KSPNGTIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDGTQKVTLKVYDF 171 (409)
T ss_pred CCccHHHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECCCCCcccceeeeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999977 5566666888
Q ss_pred c-CCCeEEEeccChhhHHHHHHHhhhchhc
Q psy12302 274 K-TPGVALAMYNTTESIESFAHSSFQVSFI 302 (303)
Q Consensus 274 k-~~GVal~myNt~eSI~~FAhs~Fq~al~ 302 (303)
+ ++||+++|+||.++++.+||.+|++|..
T Consensus 172 ~~~~~v~~~~~~T~~~~eRIar~AF~~A~~ 201 (409)
T TIGR00127 172 EEGGGVAMAMYNTDESIEGFAHSSFQLALE 201 (409)
T ss_pred cCCCCeEEEEEECHHHHHHHHHHHHHHHHH
Confidence 6 5799999999999999999999999964
No 6
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=7.4e-53 Score=399.17 Aligned_cols=190 Identities=29% Similarity=0.384 Sum_probs=182.7
Q ss_pred ccccceeecCCeEEec--CcchhHHHHHHHHhhhcccc---hhhhhhhhhhhhhhhhhcCcchhhhhhhhhhhccccccc
Q psy12302 32 ATDSRIVAKNPVVEMD--GDEMTRIIWENIKEKLIFPY---VKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCS 106 (303)
Q Consensus 32 ~~~~kI~v~nPvVemd--GDEMTRiiw~~IkekLI~Py---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (303)
..+.++++.+|+||+| ||||||++|+.|+++++.|| .
T Consensus 12 ~l~vp~~piiP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~-------------------------------------- 53 (407)
T COG0538 12 KLMVPDKPIIPFIEGDGIGDEITRAIWKVIDAAVEKAYGGER-------------------------------------- 53 (407)
T ss_pred cccCCCCcccceEecCCCcHHHHHHHHHHHHHHHHhhcCCcc--------------------------------------
Confidence 4577899999999999 99999999999999999999 7
Q ss_pred hhhhhhhhhcccccchhhhhhhhhhhhccccccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHH
Q psy12302 107 DKAKMFFLSSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVK 186 (303)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~q~i~~~iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVk 186 (303)
|++|.|||+|.++||.|+||++.|+++|||||+|||||||+||
T Consensus 54 -------------------------------~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TP------ 96 (407)
T COG0538 54 -------------------------------KIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTP------ 96 (407)
T ss_pred -------------------------------eeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCc------
Confidence 9999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCchhhhhhhcCCeEeecceeec-CCCCCCCC-cccceEEEeeccCccccceeeEecCCceEEEEEEcCCCc
Q psy12302 187 EFKLKKMWLSPNGTIRNILGGTVFREPIICK-NIPKIVPG-WTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGK 264 (303)
Q Consensus 187 Ef~LKkmw~SPNGtIRniLgGTVFRePIi~k-nIp~iVpg-W~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~ 264 (303)
|++||+|||+||||+|||++||+||.+. ++|+.||+ |+.|+||+||++||||+++|+..++||..+|.+...++.
T Consensus 97 ---vg~g~rSlNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl~~e~ 173 (407)
T COG0538 97 ---VGKGWRSLNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLIFFLEDEM 173 (407)
T ss_pred ---ccccccCchHHHHHHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccccchhheeeeccCCcchhhhhhhhhccc
Confidence 8999999999999999999999999998 99999999 999999999999999999999999999999999988763
Q ss_pred eEEEEEEeec-CCCeEEEeccChhhHHHHHHHhhhchhc
Q psy12302 265 VQTFKVFEFK-TPGVALAMYNTTESIESFAHSSFQVSFI 302 (303)
Q Consensus 265 ~~~~~v~~fk-~~GVal~myNt~eSI~~FAhs~Fq~al~ 302 (303)
.+++++|. +.||++.|||+++|+| |||++|+|||.
T Consensus 174 --~~~~i~~pe~~GIgikp~s~~~s~R-lvr~ai~yAi~ 209 (407)
T COG0538 174 --GVKKIRFPEDSGIGIKPISKEGSIR-LVRAAIEYAIE 209 (407)
T ss_pred --ccceEecCCCCceEEEecCchhhHH-HHHHHHHHHHH
Confidence 27889996 8999999999999999 99999999985
No 7
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=7.4e-41 Score=317.35 Aligned_cols=200 Identities=63% Similarity=1.079 Sum_probs=186.3
Q ss_pred ccceeecCCeEEecCcchhHHHHHHHHhhhcccchhhhhhhhhhhhhhhhhcCcchhhhhhhhhhhccccccchhhhhhh
Q psy12302 34 DSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKMFF 113 (303)
Q Consensus 34 ~~kI~v~nPvVemdGDEMTRiiw~~IkekLI~Pyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (303)
..||+|++|+|+|+||||+|.+|+.|+++|+.|++
T Consensus 3 ~~~~~~~~p~~~~~Gd~~~~~~~~~~~~~~~~~~~--------------------------------------------- 37 (410)
T PLN00103 3 FEKIKVANPIVEMDGDEMTRVIWKSIKDKLIFPFL--------------------------------------------- 37 (410)
T ss_pred cccccccCCeEEecCCcchHHHHHHHHHHHhcCCC---------------------------------------------
Confidence 46899999999999999999999999999999999
Q ss_pred hhcccccchhhhhhhhhhhhccccccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccc
Q psy12302 114 LSSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKM 193 (303)
Q Consensus 114 ~~~~~~~~~~~~~~~~~q~i~~~iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkm 193 (303)
++++.+||+|.++|++|+++++.|+.+++|++++++|+|+.||...+++|+++++.
T Consensus 38 ------------------------~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp~~~~~~~~~~~~~ 93 (410)
T PLN00103 38 ------------------------DLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKQM 93 (410)
T ss_pred ------------------------CeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCcccccccccCcccc
Confidence 99999999999999999999999999999999999999999998778999999999
Q ss_pred cCCchhhhhhhcCCeEeecceeecCCCCCCCCcccceEEEeeccCccccceeeEecCCceEEEEEEcCCC-ceEEEEEEe
Q psy12302 194 WLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQG-KVQTFKVFE 272 (303)
Q Consensus 194 w~SPNGtIRniLgGTVFRePIi~knIp~iVpgW~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g-~~~~~~v~~ 272 (303)
|+|||++||+.||+.+.++||+||++|++.|||.+|+.++|||+||+|++.|++..++|++.+|+..+++ ....+.+.+
T Consensus 94 ~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivRENTEg~ye~~~~~ 173 (410)
T PLN00103 94 WKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEGKDEKTELEVYN 173 (410)
T ss_pred ccCchHHHHHHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEecCCCceeEEEeec
Confidence 9999999999999999999999999999999999999999999999999999998889999999998754 333444444
Q ss_pred ecC-CCeEEEeccChhhHHHHHHHhhhchhc
Q psy12302 273 FKT-PGVALAMYNTTESIESFAHSSFQVSFI 302 (303)
Q Consensus 273 fk~-~GVal~myNt~eSI~~FAhs~Fq~al~ 302 (303)
+++ .|+++.+|||.+.++.+||.+|++|..
T Consensus 174 ~~g~~~v~~~~~~T~~~~~Riar~AFe~A~~ 204 (410)
T PLN00103 174 FTGAGGVALSMYNTDESIRAFAEASMNTAYQ 204 (410)
T ss_pred cCCCcceEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 454 688999999999999999999999964
No 8
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=2.2e-34 Score=272.81 Aligned_cols=200 Identities=66% Similarity=1.089 Sum_probs=192.5
Q ss_pred ccceeecCCeEEecCcchhHHHHHHHHhhhcccchhhhhhhhhhhhhhhhhcCcchhhhhhhhhhhccccccchhhhhhh
Q psy12302 34 DSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKMFF 113 (303)
Q Consensus 34 ~~kI~v~nPvVemdGDEMTRiiw~~IkekLI~Pyv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (303)
|.+|||++|+|+++||||+|++|+.++++|+.||+
T Consensus 1 ~~~~~~~~~~~~~~gd~i~~~~~~~~~~~~~~~~~--------------------------------------------- 35 (402)
T PRK08299 1 MAKIKVKNPVVELDGDEMTRIIWKFIKDKLILPYL--------------------------------------------- 35 (402)
T ss_pred CCccccCCceEEecCCCchHHHHHHHHHHHhccCC---------------------------------------------
Confidence 57899999999999999999999999999999999
Q ss_pred hhcccccchhhhhhhhhhhhccccccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccc
Q psy12302 114 LSSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKM 193 (303)
Q Consensus 114 ~~~~~~~~~~~~~~~~~q~i~~~iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkm 193 (303)
++++.++|+|.+++++|.+.+..|+.+++|++++++|+|+.||..+++.++++++.
T Consensus 36 ------------------------~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~~~~~~~~~~~~ 91 (402)
T PRK08299 36 ------------------------DIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDEARVKEFNLKKM 91 (402)
T ss_pred ------------------------CeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCcccccccCcccc
Confidence 99999999999999999999999999999999999999999999888989999999
Q ss_pred cCCchhhhhhhcCCeEeecceeecCCCCCCCCcccceEEEeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEee
Q psy12302 194 WLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEF 273 (303)
Q Consensus 194 w~SPNGtIRniLgGTVFRePIi~knIp~iVpgW~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~f 273 (303)
|+|||+++|+.||+.+-++|+.|++||++.|||..|++|.|++.+|.|.+.|+++...|..++.|+...|.+.+..+.+|
T Consensus 92 ~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~~~ivivREnTEg~Y~gi~~~~~r~~~~~~~~~~~~g~~~e~~~~~~ 171 (402)
T PRK08299 92 WKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTKPIVIGRHAYGDQYRATDFKVPGKGKLTLVFTGEDGEPIEHEVHDF 171 (402)
T ss_pred ccCchHHHHHHcCCeEEEEeeecccccccCCCCCCCEEEEecccCCcccceeEEeccCccceeeeecCCCccccceeccc
Confidence 99999999999999999999999999999999999999999999999999999998999999999999987777888898
Q ss_pred cCCCeEEEeccChhhHHHHHHHhhhchhc
Q psy12302 274 KTPGVALAMYNTTESIESFAHSSFQVSFI 302 (303)
Q Consensus 274 k~~GVal~myNt~eSI~~FAhs~Fq~al~ 302 (303)
++.|+++.++||.+.++..||..|++|..
T Consensus 172 ~~~~~~~~~~~Tr~~~eRIa~~AF~~A~~ 200 (402)
T PRK08299 172 PGAGVAMGMYNLDESIRDFARASFNYGLD 200 (402)
T ss_pred ccCceeEEEeecHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999964
No 9
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=99.39 E-value=9.5e-13 Score=125.71 Aligned_cols=152 Identities=20% Similarity=0.190 Sum_probs=121.9
Q ss_pred ccccceeeCCCCccccCC--ChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecce-
Q psy12302 138 DVECLYYDLGLPHRDATE--DQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPI- 214 (303)
Q Consensus 138 Dv~~~yyDLgl~~RD~T~--DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePI- 214 (303)
++++.++++|...-++|. +.+.-|+.++++++++++|+|+.||.. ..|.|+|.+||+.||..+..+|+
T Consensus 62 ~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~Ga~~tp~~---------~~~~s~~l~LR~~ldLyaNvRP~k 132 (416)
T TIGR00183 62 KIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRVAIKGPLTTPVG---------GGIRSLNVALRQELDLYVCLRPVR 132 (416)
T ss_pred ceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC---------ccccCcHHHHHHHcCCEEEEeEee
Confidence 788888889999989998 899999999999999999999999942 26899999999999999999996
Q ss_pred eecCCCCCCCCcccc-eEEEeeccCccccceeeEecCCceEE-EEEEcCCCceEEEEEEeec-CCCeEEEeccChhhHHH
Q psy12302 215 ICKNIPKIVPGWTNS-IVIGRHAHGDQYKATDLIVDKPGKVE-LVYTDNQGKVQTFKVFEFK-TPGVALAMYNTTESIES 291 (303)
Q Consensus 215 i~knIp~iVpgW~~p-IvIgRHA~GDQYKAtD~vV~GpGk~e-LVyt~~~g~~~~~~v~~fk-~~GVal~myNt~eSI~~ 291 (303)
.++++|...+.|.+. ++|-|+..+|.|...++...+++..+ +.|.+.++.. .+++|. ..++.+.+|+. +.++.
T Consensus 133 ~~pgl~s~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~a~~~~~~tr-~~~~R 208 (416)
T TIGR00183 133 YYKGVPSPVKHPEKVDMVIFRENTEDIYAGIEWAEGSEEAKKLIRFLQNELGV---KKIRFPEDSGIGIKPISE-EGTKR 208 (416)
T ss_pred cCCCCCCcCCCCCCCCEEEEEeCCCCcccccccccCcccceeeecccccccCc---cccccccccEEEEEEecH-HHHHH
Confidence 345665555456655 89999999999999987766666555 4465542221 234454 46888999875 89999
Q ss_pred HHHHhhhchhc
Q psy12302 292 FAHSSFQVSFI 302 (303)
Q Consensus 292 FAhs~Fq~al~ 302 (303)
+||..|++|..
T Consensus 209 iar~AFe~A~~ 219 (416)
T TIGR00183 209 LVRAAIEYAIE 219 (416)
T ss_pred HHHHHHHHHHh
Confidence 99999999964
No 10
>PRK06451 isocitrate dehydrogenase; Validated
Probab=99.14 E-value=1e-10 Score=112.21 Aligned_cols=147 Identities=20% Similarity=0.203 Sum_probs=111.4
Q ss_pred ccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecceeec
Q psy12302 138 DVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIICK 217 (303)
Q Consensus 138 Dv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePIi~k 217 (303)
++++..+|.|.+++++|.+.++-|+.+++|++.+++|+|+.||. .+.|.|+|.+||..|+..+--+| ||
T Consensus 59 ~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~GavgtP~---------~~~~~s~~l~LRk~ldLyaNvRP--vk 127 (412)
T PRK06451 59 EIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLETPI---------GKGWKSINVAIRLMLDLYANIRP--VK 127 (412)
T ss_pred ceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCC---------CcCCcChhHHHHHHcCCeEeece--ee
Confidence 78999999999999999999999999999999999999999993 33699999999999999999999 47
Q ss_pred CCCCCCCCcccc----eEEEeeccCccccceeeEecCCceE-EEEEEcC-CCceEEEEEEeecCCCeEEEeccChhhHHH
Q psy12302 218 NIPKIVPGWTNS----IVIGRHAHGDQYKATDLIVDKPGKV-ELVYTDN-QGKVQTFKVFEFKTPGVALAMYNTTESIES 291 (303)
Q Consensus 218 nIp~iVpgW~~p----IvIgRHA~GDQYKAtD~vV~GpGk~-eLVyt~~-~g~~~~~~v~~fk~~GVal~myNt~eSI~~ 291 (303)
.+|.+...|++| ++|.|+..+|.|...+..++.++.. ...|... .|.. +.+ .-++.+. -.|...++.
T Consensus 128 ~~pgl~sp~~~~~~iD~vIvREnTeG~Y~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~a~~~~-~~t~~~~eR 200 (412)
T PRK06451 128 YIPGIESPLKNPEKIDLIIFRENTDDLYRGIEYPYDSEEAKKIRDFLRKELGVE----VED--DTGIGIK-LISKFKTQR 200 (412)
T ss_pred cCCCCCCcccCcCCccEEEEEeccCCeeeccccccccccccccccccccccccc----ccc--ceeccee-eeeHHHHHH
Confidence 888877666544 7999999999999987654332221 1222221 1100 000 0123332 356778889
Q ss_pred HHHHhhhchhc
Q psy12302 292 FAHSSFQVSFI 302 (303)
Q Consensus 292 FAhs~Fq~al~ 302 (303)
+|+..|++|..
T Consensus 201 Iar~AF~~A~~ 211 (412)
T PRK06451 201 IARMAIKYAID 211 (412)
T ss_pred HHHHHHHHHHh
Confidence 99999999964
No 11
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=99.13 E-value=1.8e-10 Score=110.37 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=120.0
Q ss_pred ccccceeeCCCCccccCCC--hhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecce-
Q psy12302 138 DVECLYYDLGLPHRDATED--QVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPI- 214 (303)
Q Consensus 138 Dv~~~yyDLgl~~RD~T~D--qVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePI- 214 (303)
++++.+++.|-...++|.+ -++-|+.++++++++++|+|+.||...+ +.|+|.++|+.|+..+..+|+
T Consensus 55 ~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~tp~~~~---------~~s~~l~LR~~ldLyaNvRPvk 125 (409)
T PRK07006 55 KISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLTTPVGGG---------IRSLNVALRQELDLYVCLRPVR 125 (409)
T ss_pred ceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECcccCCCCcC---------ccChHHHHHHHcCCEEEEEEEe
Confidence 7888888889999999987 8999999999999999999999994322 569999999999999999997
Q ss_pred eecCCCCCCCCccc-ceEEEeeccCccccceeeEecCCc-eEEEEEEcCCCceEEEEEEeec-CCCeEEEeccChhhHHH
Q psy12302 215 ICKNIPKIVPGWTN-SIVIGRHAHGDQYKATDLIVDKPG-KVELVYTDNQGKVQTFKVFEFK-TPGVALAMYNTTESIES 291 (303)
Q Consensus 215 i~knIp~iVpgW~~-pIvIgRHA~GDQYKAtD~vV~GpG-k~eLVyt~~~g~~~~~~v~~fk-~~GVal~myNt~eSI~~ 291 (303)
..+++|.....|.+ .++|-|+..+|.|...+.....++ +.++.|.+.... .++++|. ..++.+..| |.+.++.
T Consensus 126 ~~pgl~~plk~~~~iD~vIvREnteG~Y~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~~~v~-Tr~~~eR 201 (409)
T PRK07006 126 YFKGVPSPVKRPEDTDMVIFRENSEDIYAGIEWKAGSAEAKKVIKFLQEEMG---VKKIRFPETSGIGIKPV-SEEGTER 201 (409)
T ss_pred cCCCCCCCCCCCCCCCEEEEEeccCCeecccccccCCcccceeeeccccccC---cccccccccceEEEEEe-cHHHHHH
Confidence 44566544334555 799999999999999876443333 455666654322 2345555 367888888 9999999
Q ss_pred HHHHhhhchhc
Q psy12302 292 FAHSSFQVSFI 302 (303)
Q Consensus 292 FAhs~Fq~al~ 302 (303)
+||..|++|..
T Consensus 202 i~r~AFe~A~~ 212 (409)
T PRK07006 202 LVRAAIEYAID 212 (409)
T ss_pred HHHHHHHHHHh
Confidence 99999999964
No 12
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=99.03 E-value=1.3e-09 Score=101.59 Aligned_cols=128 Identities=22% Similarity=0.240 Sum_probs=101.7
Q ss_pred cccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecceee
Q psy12302 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIIC 216 (303)
Q Consensus 137 iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePIi~ 216 (303)
+++++.+||+|.++| +...++-|+.+++|++++.+|+|+.||...+ +|+|||.+||+.|+-.+.-+| |
T Consensus 31 ~~i~~~~~~~G~~~~--~g~~lp~~~l~~~~~~da~l~Gav~~p~~~~--------~~~s~~~~lR~~ldlyanvRP--~ 98 (333)
T TIGR00175 31 VPIEFEEIDVSPQTD--GKTEIPDEAVESIKRNKVALKGPLETPIGKG--------GHRSLNVALRKELDLYANVVH--C 98 (333)
T ss_pred CceEEEEEecChhhc--cCCcCCHHHHHHHHHCCEEEEcccCCccccc--------cccchhHHHHHHcCCEEEeEE--e
Confidence 378999999999844 5669999999999999999999999995332 489999999999997666666 8
Q ss_pred cCCCCCCCCccc-ceEEEeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEeecCCCeEEEec-cChhhHHHHHH
Q psy12302 217 KNIPKIVPGWTN-SIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALAMY-NTTESIESFAH 294 (303)
Q Consensus 217 knIp~iVpgW~~-pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~fk~~GVal~my-Nt~eSI~~FAh 294 (303)
|.+|.+.+-+.+ .++|-|...+|.|...+..+ .+|++..+- .|.+.++.+||
T Consensus 99 k~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~--------------------------~~~~~~~~~~~Tr~~~eRi~r 152 (333)
T TIGR00175 99 KSLPGFKTRHEDVDIVIIRENTEGEYSGLEHES--------------------------VPGVVESLKVITRDKSERIAR 152 (333)
T ss_pred cCCCCCCCCCCCcCEEEEEEeCCCcccceeEec--------------------------cCCeEEEEEecCHHHHHHHHH
Confidence 888887654433 48899999999998865331 123444433 59999999999
Q ss_pred Hhhhchhc
Q psy12302 295 SSFQVSFI 302 (303)
Q Consensus 295 s~Fq~al~ 302 (303)
..|++|..
T Consensus 153 ~Af~~A~~ 160 (333)
T TIGR00175 153 YAFEYARK 160 (333)
T ss_pred HHHHHHHh
Confidence 99999964
No 13
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=98.98 E-value=1.2e-09 Score=101.70 Aligned_cols=130 Identities=21% Similarity=0.237 Sum_probs=104.6
Q ss_pred cccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecce-e
Q psy12302 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPI-I 215 (303)
Q Consensus 137 iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePI-i 215 (303)
+++++.++|+|.+++++|.+.++-|+.+++|++++.+|+|+.||... -+.|+|.++|+.|+..+.-+|+ .
T Consensus 26 ~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~~---------~~~s~~~~LR~~ldlyanvRP~r~ 96 (322)
T TIGR02088 26 LEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPANP---------GYKSVIVTLRKELDLYANVRPAKS 96 (322)
T ss_pred CCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCCC---------CccChHHHHHHHcCCEEEEEEeec
Confidence 48899999999999999999999999999999999999999999421 2689999999999999999997 4
Q ss_pred ecCCCCCCCCcccceEEEeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEeecCCCeEEEeccChhhHHHHHHH
Q psy12302 216 CKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHS 295 (303)
Q Consensus 216 ~knIp~iVpgW~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~fk~~GVal~myNt~eSI~~FAhs 295 (303)
++++|...|. .-.++|-|+..+|.|...++.. . +.+..+.. .|.+-++.+|+.
T Consensus 97 ~~g~~~~~~~-~iD~vivREnteG~Y~g~~~~~------------~-------------~~a~~~~~-~tr~~~eRi~r~ 149 (322)
T TIGR02088 97 LPGIPDLYPN-GKDIVIVRENTEGLYAGFEFGF------------S-------------DRAIAIRV-ITREGSERIARF 149 (322)
T ss_pred cCCCCCCCCC-CCCEEEEEeCcCCeeecccccc------------C-------------cceEEEEE-ecHHHHHHHHHH
Confidence 4555554443 5778999999999999864320 0 11223333 367788999999
Q ss_pred hhhchhc
Q psy12302 296 SFQVSFI 302 (303)
Q Consensus 296 ~Fq~al~ 302 (303)
.|++|..
T Consensus 150 AF~~A~~ 156 (322)
T TIGR02088 150 AFNLAKE 156 (322)
T ss_pred HHHHHHH
Confidence 9999853
No 14
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=98.83 E-value=1.6e-09 Score=100.49 Aligned_cols=133 Identities=26% Similarity=0.272 Sum_probs=95.8
Q ss_pred cccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCch--hhHHHhhhcccccCCchhhhhhhcCCeEeecce
Q psy12302 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPD--EARVKEFKLKKMWLSPNGTIRNILGGTVFREPI 214 (303)
Q Consensus 137 iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPd--eaRVkEf~LKkmw~SPNGtIRniLgGTVFRePI 214 (303)
+++++.++|+|..+++.|.+.++-|+.++++++.+.+|+|.-||. +.|... .| -++|.-|+-.+--+|
T Consensus 31 ~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~~~~~~~-~l--------~~lR~~ldl~anvRp- 100 (348)
T PF00180_consen 31 LDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPPGIRSEN-GL--------LKLRKELDLYANVRP- 100 (348)
T ss_dssp EEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSSSHSHHH-HH--------HHHHHHTTHHEEEEE-
T ss_pred cccccccccchhhhhhhccccccHHHHHHHhhcCcEEEcccccccccccccHH-HH--------HHHHHhcccceeeEE-
Confidence 389999999999999999999999999999999999999999999 222221 22 356666665555555
Q ss_pred eecCCC--C-------CCCCcccceEEEeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEeecCCCeEEE-ecc
Q psy12302 215 ICKNIP--K-------IVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALA-MYN 284 (303)
Q Consensus 215 i~knIp--~-------iVpgW~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~fk~~GVal~-myN 284 (303)
|+.+| . -++.+ .+|+|-|+..+|.|...+.... +| +.+..+|.. ...
T Consensus 101 -~~~~~~~~~~~~~~~~~~~~-iDivivREnteG~Y~g~~~~~~-~~--------------------~~~~~~a~~~~~~ 157 (348)
T PF00180_consen 101 -VRSFPGPGVPSPLKDEIPEG-IDIVIVRENTEGLYSGIEHEIG-DG--------------------GTPDEVAIDTKVI 157 (348)
T ss_dssp -EEEECETTGGSSBSHHHHTT-SEEEEEEESSSGGGGEEEEEEC-SE--------------------EEGSSEEEEEEEE
T ss_pred -EEEeccccccccccccccCc-ceEEEecccccCcccCCCCcee-ec--------------------cCCCceEEEeecc
Confidence 33332 1 12244 7999999999999999988763 31 122334433 245
Q ss_pred ChhhHHHHHHHhhhchhc
Q psy12302 285 TTESIESFAHSSFQVSFI 302 (303)
Q Consensus 285 t~eSI~~FAhs~Fq~al~ 302 (303)
|.+.++.+|+.+|++|..
T Consensus 158 t~~~~eRi~r~AF~~A~~ 175 (348)
T PF00180_consen 158 TREGIERIARFAFEYARK 175 (348)
T ss_dssp EHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHH
Confidence 566799999999999864
No 15
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=98.60 E-value=2.5e-07 Score=88.42 Aligned_cols=129 Identities=22% Similarity=0.242 Sum_probs=95.9
Q ss_pred cccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecceee
Q psy12302 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIIC 216 (303)
Q Consensus 137 iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePIi~ 216 (303)
+++++.+||+|.+.+++|.+.++-|+.+++|++++.+|+|+.||.. +.+.|+|.++|+-||..+--+| |
T Consensus 69 ~~ie~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~~---------~~~~s~~~~LRk~ldLyaNvRP--v 137 (372)
T PLN00118 69 VPIEWEEHYVGTTVDPRTGSFLTWESLESVRRNKVGLKGPMATPIG---------KGHRSLNLTLRKELGLYANVRP--C 137 (372)
T ss_pred CCeEEEEEeCcHHHHHhcCCcCCHHHHHHHHHCCEEEECCccCCcc---------ccccCchHHHHHHcCCeeeecc--c
Confidence 3789999999999999999999999999999999999999999942 2489999999999999998888 5
Q ss_pred cCCCCCCCCc-ccceEEEeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEeecCCCeEEEe-ccChhhHHHHHH
Q psy12302 217 KNIPKIVPGW-TNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALAM-YNTTESIESFAH 294 (303)
Q Consensus 217 knIp~iVpgW-~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~fk~~GVal~m-yNt~eSI~~FAh 294 (303)
|.+|.+..-+ .--++|-|-.-+|.|-..+..+ .+|++..+ --|.+.++..|+
T Consensus 138 r~~pg~~~~~~~iD~vIVREnteG~Y~g~~~~~--------------------------~~gv~~~~~v~Tr~~~eRIar 191 (372)
T PLN00118 138 YSLPGYKTRYDDVDLVTIRENTEGEYSGLEHQV--------------------------VRGVVESLKIITRQASLRVAE 191 (372)
T ss_pred ccCCCccCcccCceEEEEEecCCCcccceeeec--------------------------cCCeEEEEEecCHHHHHHHHH
Confidence 5555543211 1135566666666666643221 12333332 245566788999
Q ss_pred Hhhhchhc
Q psy12302 295 SSFQVSFI 302 (303)
Q Consensus 295 s~Fq~al~ 302 (303)
..|++|..
T Consensus 192 ~AF~~A~~ 199 (372)
T PLN00118 192 YAFHYAKT 199 (372)
T ss_pred HHHHHHHH
Confidence 99999853
No 16
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=97.64 E-value=0.0002 Score=67.75 Aligned_cols=125 Identities=18% Similarity=0.150 Sum_probs=98.3
Q ss_pred cccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecceee
Q psy12302 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIIC 216 (303)
Q Consensus 137 iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePIi~ 216 (303)
+++++.+||+|.++.++|.+-+.-|+.++++++.+.+|.|.-||. .|.|-++|+-||-.+--+| |
T Consensus 29 ~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~-------------~~~~~~LR~~ldlyanvRP--~ 93 (330)
T PRK14025 29 LPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA-------------ADVIVKLRRILDTYANVRP--V 93 (330)
T ss_pred CcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc-------------cchHHHHHHHcCCeEEEEE--e
Confidence 478999999999999999999999999999999999999977772 4779999999999999999 5
Q ss_pred cCCCCCCCCc-ccceEEEeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEeecCCCeEE-EeccChhhHHHHHH
Q psy12302 217 KNIPKIVPGW-TNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVAL-AMYNTTESIESFAH 294 (303)
Q Consensus 217 knIp~iVpgW-~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~fk~~GVal-~myNt~eSI~~FAh 294 (303)
|..|.+..-. .--++|-|-.-+|.|...+..+ .+|++. ...-|.+-++..|+
T Consensus 94 r~~pg~~~~~~~iD~vivREnteG~Y~g~~~~~--------------------------~~~~~~~~~~~Tr~~~~Ri~r 147 (330)
T PRK14025 94 KSYKGVKCLYPDIDYVIVRENTEGLYKGIEAEI--------------------------ADGVTVATRVITRKASERIFR 147 (330)
T ss_pred ecCCCCCCccCCcCEEEEEECCCceecCccccc--------------------------CCCceEEeEeccHHHHHHHHH
Confidence 6666644321 1238899999999998864321 112222 34467788899999
Q ss_pred Hhhhchhc
Q psy12302 295 SSFQVSFI 302 (303)
Q Consensus 295 s~Fq~al~ 302 (303)
..|++|..
T Consensus 148 ~Af~~A~~ 155 (330)
T PRK14025 148 FAFEMAKR 155 (330)
T ss_pred HHHHHHHh
Confidence 99999853
No 17
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=97.30 E-value=0.0011 Score=63.12 Aligned_cols=136 Identities=18% Similarity=0.192 Sum_probs=100.4
Q ss_pred cccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecceee
Q psy12302 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIIC 216 (303)
Q Consensus 137 iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePIi~ 216 (303)
+++++.++|+|.+..++|.+.+.-++.+++|++.+.+|.|.-||.. . -.....|.|.++|.-||-.+--+| |
T Consensus 35 ~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~~---~---~~~~~~~~~~~LRk~ldLyaNvRP--~ 106 (344)
T PRK03437 35 PGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPSV---P---SGVLERGLLLKLRFALDHYVNLRP--S 106 (344)
T ss_pred CceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCCC---C---CCCcccchHHHHHHHcCCeEEEEE--e
Confidence 4899999999999999999999999999999999999999999931 1 012356779999999999999999 6
Q ss_pred cCCCCCCCCcc--cc--eEEEeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEeecCCCeEEEeccChhhHHHH
Q psy12302 217 KNIPKIVPGWT--NS--IVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESF 292 (303)
Q Consensus 217 knIp~iVpgW~--~p--IvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~fk~~GVal~myNt~eSI~~F 292 (303)
|.+|.+-...+ +. ++|-|-.-+|.|-..+-.+ .+ |... + -++.... -|.+-++..
T Consensus 107 r~~pg~~sp~k~~~~iD~vivREnteG~Y~g~~~~~-~~-----------~~~~-----~---~a~~~~~-~Tr~~~~RI 165 (344)
T PRK03437 107 KLYPGVTSPLAGPGDIDFVVVREGTEGPYTGNGGAL-RV-----------GTPH-----E---VATEVSV-NTAFGVERV 165 (344)
T ss_pred ecCCCCCCcCCCCCCCCEEEEEECCCccccCCcccc-cC-----------CCcc-----e---eEEEEEE-ecHHHHHHH
Confidence 77777543332 22 7899999999997753111 01 1110 1 1223333 466788999
Q ss_pred HHHhhhchh
Q psy12302 293 AHSSFQVSF 301 (303)
Q Consensus 293 Ahs~Fq~al 301 (303)
|+..|++|.
T Consensus 166 a~~AF~~A~ 174 (344)
T PRK03437 166 VRDAFERAQ 174 (344)
T ss_pred HHHHHHHHH
Confidence 999999985
No 18
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=97.15 E-value=0.0027 Score=60.26 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=98.2
Q ss_pred cccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecceee
Q psy12302 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIIC 216 (303)
Q Consensus 137 iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePIi~ 216 (303)
.++++.++|+|-.+.++|.+-+.-|+-+++|++.+.+|.|.-||--. -..|+|-++|.-||--+--+| |
T Consensus 30 ~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~~---------~~~~~~~~LR~~ldlyanvRP--~ 98 (334)
T PRK08997 30 CDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVGE---------GFTSINVTLRKKFDLYANVRP--V 98 (334)
T ss_pred CCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCCc---------CccchHHHHHHHcCCeEEEee--c
Confidence 37899999999999999999999999999999999999999898211 135899999999999999999 5
Q ss_pred cCCCCCCCCcc-cceEEEeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEeecCCCeEE-EeccChhhHHHHHH
Q psy12302 217 KNIPKIVPGWT-NSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVAL-AMYNTTESIESFAH 294 (303)
Q Consensus 217 knIp~iVpgW~-~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~fk~~GVal-~myNt~eSI~~FAh 294 (303)
|.+|.+..-.. --++|-|-.-+|.|-..+.... + +|. +|. ....|.+-++..||
T Consensus 99 k~~~g~~~~~~~iD~vivREnteG~Y~g~~~~~~----------~-~~~-------------~a~~~~~~Tr~~~eRi~r 154 (334)
T PRK08997 99 LSFPGTKARYDNIDIITVRENTEGMYSGEGQTVS----------E-DGE-------------TAEATSIITRKGAERIVR 154 (334)
T ss_pred ccCCCCCCccCCcCEEEEEeccCceecCccceec----------C-CCc-------------eEEEEEEeeHHHHHHHHH
Confidence 56666543221 2368889888888887542110 0 110 111 23457788899999
Q ss_pred Hhhhchhc
Q psy12302 295 SSFQVSFI 302 (303)
Q Consensus 295 s~Fq~al~ 302 (303)
..|++|..
T Consensus 155 ~Af~~A~~ 162 (334)
T PRK08997 155 FAYELARK 162 (334)
T ss_pred HHHHHHHh
Confidence 99999853
No 19
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=96.82 E-value=0.01 Score=57.20 Aligned_cols=123 Identities=22% Similarity=0.215 Sum_probs=90.5
Q ss_pred ccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecceeec
Q psy12302 138 DVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIICK 217 (303)
Q Consensus 138 Dv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePIi~k 217 (303)
++++.++|+|-.. .-+.-|+-++++++.+.+|.|.-||-. .-.+|+|.++|+-||-.+.-+| ||
T Consensus 59 ~i~~~~~~~G~~~-----~~lp~~~l~~~~~~da~L~Gavg~p~~---------~~~~s~~l~LR~~ldLyaNvRP--~k 122 (360)
T PLN00123 59 PVYFERYEVHGDM-----KKVPEEVLESIRRNKVCLKGGLATPVG---------GGVSSLNVQLRKELDLFASLVN--CF 122 (360)
T ss_pred ceEEEEEccCCCC-----ccCCHHHHHHHHHCCEEEEccccCCCC---------cCccchHHHHHHHcCCEEEEEE--ee
Confidence 6888899998773 357889999999999999999999921 1145889999999999999999 66
Q ss_pred CCCCCCCCc-ccceEEEeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEeecCCCeE-EEeccChhhHHHHHHH
Q psy12302 218 NIPKIVPGW-TNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVA-LAMYNTTESIESFAHS 295 (303)
Q Consensus 218 nIp~iVpgW-~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~fk~~GVa-l~myNt~eSI~~FAhs 295 (303)
..|.+..-+ .-.++|-|-.-+|.|-..+..+ .+ |++ -..-.|.+-++..|+.
T Consensus 123 ~~pg~~~~~~~iD~viVREnteG~Y~g~~~~~-~~-------------------------g~~~~~~v~Tr~~~eRIar~ 176 (360)
T PLN00123 123 NLPGLPTRHENVDIVVIRENTEGEYSGLEHEV-VP-------------------------GVVESLKVITKFCSERIAKY 176 (360)
T ss_pred cCCCCCCccCCCCEEEEEeCCCceeccceeec-CC-------------------------CceEEEEEecHHHHHHHHHH
Confidence 777654211 2357888888888887754321 11 221 2234577888999999
Q ss_pred hhhchhc
Q psy12302 296 SFQVSFI 302 (303)
Q Consensus 296 ~Fq~al~ 302 (303)
.|++|..
T Consensus 177 AF~~A~~ 183 (360)
T PLN00123 177 AFEYAYL 183 (360)
T ss_pred HHHHHHh
Confidence 9999853
No 20
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=96.82 E-value=0.0073 Score=57.58 Aligned_cols=139 Identities=19% Similarity=0.097 Sum_probs=96.3
Q ss_pred cccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecceee
Q psy12302 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIIC 216 (303)
Q Consensus 137 iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePIi~ 216 (303)
+++++.++|+|.+.-+.|.+-++-++-+++|++.+.+|.|.=||..... +.--.-+.| |.++|.-|+-.+==+| |
T Consensus 31 ~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~~--~~~~~~~~~-~~~LR~~ldlyanvRP--~ 105 (349)
T TIGR00169 31 LKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNL--PRDQRPEQG-LLKLRKSLDLFANLRP--A 105 (349)
T ss_pred CceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCCC--Cccccchhh-HHHHHHHcCCeEEEEE--e
Confidence 4789999999999999999999999999999999999999888842110 000001223 9999999999888888 5
Q ss_pred cCCCCCC---CC-----cccceEEEeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEeecCCCeEEE-eccChh
Q psy12302 217 KNIPKIV---PG-----WTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALA-MYNTTE 287 (303)
Q Consensus 217 knIp~iV---pg-----W~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~fk~~GVal~-myNt~e 287 (303)
|.+|.+. |. =.--++|-|-.-+|.|-..+....++| ..+++.. .-.|.+
T Consensus 106 r~~~g~~~~~p~~~~~~~~iD~vivREntEG~Y~g~~~~~~~~~----------------------~~~~a~~~~~~Tr~ 163 (349)
T TIGR00169 106 KVFPSLEDLSPLKEEIAKGVDFVVVRELTGGIYFGEPKGRFGAG----------------------GEGEAWDTEVYTKP 163 (349)
T ss_pred eccCCCCccCCCcccccCCceEEEEeeccCCeecCCCccccCCC----------------------CcceEEEEEEeeHH
Confidence 6666543 11 123478889988888877532111111 0111111 224788
Q ss_pred hHHHHHHHhhhchhc
Q psy12302 288 SIESFAHSSFQVSFI 302 (303)
Q Consensus 288 SI~~FAhs~Fq~al~ 302 (303)
.++.+|+..|++|..
T Consensus 164 ~~eRI~r~AF~~A~~ 178 (349)
T TIGR00169 164 EIERIARVAFEMARK 178 (349)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999953
No 21
>PRK09222 isocitrate dehydrogenase; Validated
Probab=96.68 E-value=0.0098 Score=59.31 Aligned_cols=128 Identities=20% Similarity=0.197 Sum_probs=97.6
Q ss_pred ccccceeeCCCCccccCC-ChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecceee
Q psy12302 138 DVECLYYDLGLPHRDATE-DQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIIC 216 (303)
Q Consensus 138 Dv~~~yyDLgl~~RD~T~-DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePIi~ 216 (303)
++++.++|+|...-+++. +.+.-++.++++++.+.+|.+.-||-. .-.+|+|-++|.-||-.+--+| |
T Consensus 33 ~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~---------~~~~s~~~~LRk~ldLYaNvRP--~ 101 (482)
T PRK09222 33 PLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQG---------GGYKSLNVTLRKTLGLYANVRP--C 101 (482)
T ss_pred ceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCc---------cCccchHHHHHHHcCCeEEeee--E
Confidence 689999999999988886 689999999999999999999999931 1257889999999999999999 4
Q ss_pred cCC-CCCCC-CcccceEEEeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEeecCCCeEEE-eccChhhHHHHH
Q psy12302 217 KNI-PKIVP-GWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALA-MYNTTESIESFA 293 (303)
Q Consensus 217 knI-p~iVp-gW~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~fk~~GVal~-myNt~eSI~~FA 293 (303)
+.+ |.+.. .=.-.++|-|-.-+|.|-..+... .+ |++.. .--|.+.++..|
T Consensus 102 r~~~pgv~~~~~~iD~vIVRENtEG~Y~G~e~~~-~~-------------------------~~~~~~k~iTr~~~eRI~ 155 (482)
T PRK09222 102 VSYHPFVETKHPNLDVVIIRENEEDLYAGIEHRQ-TP-------------------------DVYQCLKLISRPGSEKII 155 (482)
T ss_pred EecCCCCCCCCCCcCEEEEEeccCCeeccceeec-CC-------------------------CeeeEeeccCHHHHHHHH
Confidence 456 44321 114568899999999998865431 11 12211 235677889999
Q ss_pred HHhhhchhc
Q psy12302 294 HSSFQVSFI 302 (303)
Q Consensus 294 hs~Fq~al~ 302 (303)
+..|++|..
T Consensus 156 r~AFe~A~~ 164 (482)
T PRK09222 156 RYAFEYARA 164 (482)
T ss_pred HHHHHHHHh
Confidence 999999853
No 22
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=96.68 E-value=0.0073 Score=60.12 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=96.9
Q ss_pred cccccceeeCCCCccccCC-ChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeeccee
Q psy12302 137 IDVECLYYDLGLPHRDATE-DQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPII 215 (303)
Q Consensus 137 iDv~~~yyDLgl~~RD~T~-DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePIi 215 (303)
.++++..+|.|....+++. +.++-++-++++++.+.+|.|.-||... --+|+|-++|.-||--+--+|
T Consensus 28 ~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~~---------~~~s~~~~LRk~ldLYANvRP-- 96 (473)
T TIGR02924 28 APIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQGG---------GHKSLNVTLRKTLGLYANIRP-- 96 (473)
T ss_pred CCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCcc---------CcccHHHHHHHHcCCeEEEEE--
Confidence 4789999999999999885 7999999999999999999999999321 135889999999999998888
Q ss_pred ecCCCCCCCCc--ccceEEEeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEeecCCCeEEEeccChhhHHHHH
Q psy12302 216 CKNIPKIVPGW--TNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFA 293 (303)
Q Consensus 216 ~knIp~iVpgW--~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~fk~~GVal~myNt~eSI~~FA 293 (303)
|+..|+.++.= .--+||-|-.-+|.|-..+..+. +| -.+ .+ .--|.+.++..|
T Consensus 97 v~~~~p~~~~~~~~vDiVIVRENtEGlY~G~e~~~~-~~-----------~~~------------~~-kviTr~g~eRI~ 151 (473)
T TIGR02924 97 CVSYHPFIETKSPNLNIVIVRENEEDLYTGIEYRQT-PD-----------TYE------------CT-KLITRSGSEKIC 151 (473)
T ss_pred eeccCCCCCCccCCcCEEEEEeccCceecCceeecc-CC-----------hhe------------Ee-EecCHHHHHHHH
Confidence 55663333321 22389999999999988654321 11 111 12 235677888899
Q ss_pred HHhhhchhc
Q psy12302 294 HSSFQVSFI 302 (303)
Q Consensus 294 hs~Fq~al~ 302 (303)
+..|++|..
T Consensus 152 r~AFe~A~~ 160 (473)
T TIGR02924 152 RYAFEYARK 160 (473)
T ss_pred HHHHHHHHh
Confidence 999998853
No 23
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=96.55 E-value=0.014 Score=55.76 Aligned_cols=137 Identities=13% Similarity=0.077 Sum_probs=97.6
Q ss_pred cccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecceee
Q psy12302 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIIC 216 (303)
Q Consensus 137 iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePIi~ 216 (303)
+++++.++|+|....++|.+-+.-++-+++|++.+.+|.|.=||.... . .+--.|+|-++|.-||--+--+| |
T Consensus 36 ~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~~~~---~--~~~~~~~~l~LRk~ldLyaNvRP--~ 108 (352)
T TIGR02089 36 FSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPALVP---D--HISLWGLLLKIRREFDQYANVRP--A 108 (352)
T ss_pred cceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCCCCC---C--ccCchhhHHHHHHHcCCeEEEEE--e
Confidence 588999999999999999999999999999999999999988883210 0 01113458999999999998888 6
Q ss_pred cCCCCCCCCcc------cceEEEeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEeecCCCeEEEeccChhhHH
Q psy12302 217 KNIPKIVPGWT------NSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIE 290 (303)
Q Consensus 217 knIp~iVpgW~------~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~fk~~GVal~myNt~eSI~ 290 (303)
|..|.+...-+ --++|-|-.-+|.|-..+-.+. +| ... + -++.+ +-.|.+-++
T Consensus 109 ~~~~g~~sp~k~~~~~~iD~vivREnteG~Y~G~~~~~~-~~-----------~~~-----~---~a~~~-~~~tr~~~e 167 (352)
T TIGR02089 109 KLLPGVTSPLRNCGPGDFDFVVVRENSEGEYSGVGGRIH-RG-----------TDE-----E---VATQN-AIFTRKGVE 167 (352)
T ss_pred ecCCCCCCccccccCCCCCEEEEEecCCccccccccccc-CC-----------ccc-----e---eEEEe-EEecHHHHH
Confidence 66776543222 2488999999999977531111 11 100 0 01122 345677889
Q ss_pred HHHHHhhhchh
Q psy12302 291 SFAHSSFQVSF 301 (303)
Q Consensus 291 ~FAhs~Fq~al 301 (303)
..|+..|++|.
T Consensus 168 Ri~r~Af~~A~ 178 (352)
T TIGR02089 168 RIMRFAFELAQ 178 (352)
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 24
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=96.52 E-value=0.0099 Score=56.94 Aligned_cols=139 Identities=20% Similarity=0.103 Sum_probs=98.2
Q ss_pred cccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecceee
Q psy12302 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIIC 216 (303)
Q Consensus 137 iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePIi~ 216 (303)
+++++.++|+|...-+.|.+-+.-|+-+++|++.+.+|.|.=||.-..+. ..+.. -.| |-++|.-|+-.+--+| |
T Consensus 34 ~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~~~~-~~~~~-~~~-~~~LR~~ldlyanvRP--~ 108 (358)
T PRK00772 34 FDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWDNLP-PDVRP-ERG-LLALRKELGLFANLRP--A 108 (358)
T ss_pred CceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCCCCC-ccCCC-hhh-HHHHHHHcCCeEEEeE--e
Confidence 37899999999999999999999999999999999999998888421110 01111 134 9999999999999999 5
Q ss_pred cCCCCCCC--Cc------ccceEEEeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEeecCCCeE-EEeccChh
Q psy12302 217 KNIPKIVP--GW------TNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVA-LAMYNTTE 287 (303)
Q Consensus 217 knIp~iVp--gW------~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~fk~~GVa-l~myNt~e 287 (303)
|.+|.+.. .. .--++|-|-.-+|.|-..+..+. +| .++ .+| -....|.+
T Consensus 109 r~~pg~~~~~plk~~~~~~iD~vivREntEG~Y~g~~~~~~-~~---------~~~------------~~a~~~~~iTr~ 166 (358)
T PRK00772 109 KLYPGLADASPLKPEIVAGLDILIVRELTGGIYFGEPRGRE-GL---------GGE------------ERAFDTMVYTRE 166 (358)
T ss_pred ecCCCCCCcCCCcccccCCccEEEEecccCCeecCCccccc-CC---------CCc------------eeEEEEEEeeHH
Confidence 56665432 12 23478888888888877532210 00 011 112 23456888
Q ss_pred hHHHHHHHhhhchhc
Q psy12302 288 SIESFAHSSFQVSFI 302 (303)
Q Consensus 288 SI~~FAhs~Fq~al~ 302 (303)
.++.+||..|++|..
T Consensus 167 ~~~Ri~r~Af~~A~~ 181 (358)
T PRK00772 167 EIERIARVAFELARK 181 (358)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999853
No 25
>PRK08194 tartrate dehydrogenase; Provisional
Probab=96.09 E-value=0.03 Score=53.65 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=96.8
Q ss_pred cccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCc---hhhhhhhcCCeEeecc
Q psy12302 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSP---NGTIRNILGGTVFREP 213 (303)
Q Consensus 137 iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SP---NGtIRniLgGTVFReP 213 (303)
.++++.++|+|.+.-++|.+-+.-++-+++|++.+.+|.|.=||... . -..|+ |-++|.-|+-..--+|
T Consensus 36 ~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~~--~------~~~~~~~~~l~LR~~ldLyaNvRP 107 (352)
T PRK08194 36 LKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKLV--P------DHISLWGLLIKIRREFEQVINIRP 107 (352)
T ss_pred CceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCcC--C------CCCCchhhHHHHHHHcCCEEEEEe
Confidence 48899999999999999999999999999999999999998888411 1 12344 8899999999999899
Q ss_pred eeecCCCCCCCCc----ccceEEEeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEeecCCCeEEEeccChhhH
Q psy12302 214 IICKNIPKIVPGW----TNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESI 289 (303)
Q Consensus 214 Ii~knIp~iVpgW----~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~fk~~GVal~myNt~eSI 289 (303)
||..|.+...- .--++|-|-.-+|.|-..+..+ .+ |.. + -++ -.+..|.+-+
T Consensus 108 --~k~~pg~~splk~~~~iD~vivREnteG~Y~g~~~~~-~~-----------g~~------~---~a~-~~~~~Tr~~~ 163 (352)
T PRK08194 108 --AKQLRGIKSPLANPKDFDLLVVRENSEGEYSEVGGRI-HR-----------GED------E---IAI-QNAVFTRKGT 163 (352)
T ss_pred --eecCCCCCCCCCCCCCCCEEEEEeCCCccccCCCccc-cC-----------Ccc------c---eEE-EEEEeeHHHH
Confidence 55666654221 2367888998888887643111 01 100 0 011 2245678888
Q ss_pred HHHHHHhhhchh
Q psy12302 290 ESFAHSSFQVSF 301 (303)
Q Consensus 290 ~~FAhs~Fq~al 301 (303)
+..|+..|++|.
T Consensus 164 eRI~r~Af~~A~ 175 (352)
T PRK08194 164 ERAMRYAFELAA 175 (352)
T ss_pred HHHHHHHHHHHH
Confidence 999999999985
No 26
>PRK07362 isocitrate dehydrogenase; Validated
Probab=94.86 E-value=0.12 Score=51.94 Aligned_cols=148 Identities=17% Similarity=0.166 Sum_probs=101.4
Q ss_pred ccccceeeCCCCccccCCC--hhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeeccee
Q psy12302 138 DVECLYYDLGLPHRDATED--QVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPII 215 (303)
Q Consensus 138 Dv~~~yyDLgl~~RD~T~D--qVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePIi 215 (303)
++++.+++.|-+..+++.+ -++-|+-++++++++.+|-+.=||-.. -+.|.|.++|..||--+=-+|
T Consensus 64 ~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~tP~~~---------g~~s~~l~LRk~ldLyaNvRP-- 132 (474)
T PRK07362 64 KINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTPIGG---------GIRSLNVALRQIFDLYSCVRP-- 132 (474)
T ss_pred CeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCCc---------CccchHHHHHHHcCCceeeeE--
Confidence 6788888899999999996 588999999999999999998888211 145889999999999888888
Q ss_pred ecCCCCCCCCcc----cceEEEeeccCccccceeeEecC-Cc-eE----EEEEEcCC---CceEEEEEEeecCCCeEEEe
Q psy12302 216 CKNIPKIVPGWT----NSIVIGRHAHGDQYKATDLIVDK-PG-KV----ELVYTDNQ---GKVQTFKVFEFKTPGVALAM 282 (303)
Q Consensus 216 ~knIp~iVpgW~----~pIvIgRHA~GDQYKAtD~vV~G-pG-k~----eLVyt~~~---g~~~~~~v~~fk~~GVal~m 282 (303)
||..|.+-...+ --++|-|-.-+|.|-..+..+.. .| ++ ...+.+.+ |+... .. +-++.+..
T Consensus 133 vr~~pgl~sp~k~~~~iD~vIvRENTEGlY~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~a~~~k~ 207 (474)
T PRK07362 133 CRYYAGTPSPHKNPEKLDVIVYRENTEDIYMGIEWEAGDEIGDKLIKHLNEEVIPASPELGKRQI--PL---GSGIGIKP 207 (474)
T ss_pred eeccCCCCCcccCCCCCCEEEEEECCCceecccccccccccchhccccccccccccccccccccc--cc---ceeeeeee
Confidence 556666543332 34789999999999886543211 11 11 11122221 11110 00 12334444
Q ss_pred ccChhhHHHHHHHhhhchhc
Q psy12302 283 YNTTESIESFAHSSFQVSFI 302 (303)
Q Consensus 283 yNt~eSI~~FAhs~Fq~al~ 302 (303)
.|.+-++..|+..|++|..
T Consensus 208 -iTr~g~eRI~r~AFe~A~~ 226 (474)
T PRK07362 208 -VSKTGSQRHIRRAIEHALR 226 (474)
T ss_pred -ccHHHHHHHHHHHHHHHHh
Confidence 5777889999999999864
No 27
>PLN02329 3-isopropylmalate dehydrogenase
Probab=93.87 E-value=0.3 Score=48.12 Aligned_cols=138 Identities=17% Similarity=0.135 Sum_probs=96.4
Q ss_pred ccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccC-CchhhhhhhcCCeEeecceee
Q psy12302 138 DVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWL-SPNGTIRNILGGTVFREPIIC 216 (303)
Q Consensus 138 Dv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~-SPNGtIRniLgGTVFRePIi~ 216 (303)
++++.++|+|..+-++|.+-+.-|+-++++++.+.+|.|.=||..... -..+|. |+|-++|.-||-.+==+| |
T Consensus 79 ~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~~~~----~~~~~~e~~ll~LRk~ldLyaNvRP--v 152 (409)
T PLN02329 79 EFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKWDKN----EKHLRPEMALFYLRRDLKVFANLRP--A 152 (409)
T ss_pred ceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCCCC----cccccccccHHHHHHHcCCeEeeee--e
Confidence 889999999999999999999999999999999999999878842110 112332 789999999999888888 5
Q ss_pred cCCCCCCC--Cc------ccceEEEeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEeecCCCeEEEeccChhh
Q psy12302 217 KNIPKIVP--GW------TNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTES 288 (303)
Q Consensus 217 knIp~iVp--gW------~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~fk~~GVal~myNt~eS 288 (303)
|..|.+.. .. .=-++|-|-.-+|.|-..+. +. ...+ .|. + -++.+ +-.|.+-
T Consensus 153 r~~pg~~~~splk~~~~~~iD~vIVREnTEG~Y~G~~~-----~~---~~~~-~~~-------~---~a~~~-~~iTr~~ 212 (409)
T PLN02329 153 TVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPR-----GI---TINE-NGE-------E---VGVST-EIYAAHE 212 (409)
T ss_pred eccCCCCCcCcccccccCCceEEEEEECCCCeecCCCc-----ce---eccc-CCc-------e---eEEEe-EEecHHH
Confidence 66666542 12 23468889988888876421 10 0000 111 0 01222 3346678
Q ss_pred HHHHHHHhhhchh
Q psy12302 289 IESFAHSSFQVSF 301 (303)
Q Consensus 289 I~~FAhs~Fq~al 301 (303)
++..|+..|++|.
T Consensus 213 ~eRI~r~AFe~A~ 225 (409)
T PLN02329 213 IDRIARVAFETAR 225 (409)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999985
No 28
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=91.25 E-value=0.9 Score=44.39 Aligned_cols=135 Identities=18% Similarity=0.127 Sum_probs=99.1
Q ss_pred cccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecceee
Q psy12302 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIIC 216 (303)
Q Consensus 137 iDv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePIi~ 216 (303)
+++++.++|.|...=+++..-+.-|+-++++++.+.++-|.=||...-. ..--.|.+=++|.-|+=-.=-+| +
T Consensus 34 ~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~~-----~~~~~~~ll~lRk~l~lyANlRP--~ 106 (348)
T COG0473 34 LDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDPL-----PRPERGLLLALRKELDLYANLRP--A 106 (348)
T ss_pred CceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCCC-----CCcccchHHHHHHhcCceeeeee--c
Confidence 4899999999999999999999999999999999999999999943221 12345788899999998777777 4
Q ss_pred cCCCCCCCCcc--cceEEEeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEeecCCCeEEEeccChhhHHHHHH
Q psy12302 217 KNIPKIVPGWT--NSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAH 294 (303)
Q Consensus 217 knIp~iVpgW~--~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~fk~~GVal~myNt~eSI~~FAh 294 (303)
|.+|.+-+.-. =-++|-|-.-++.|-..+....++| |+++ . .+-.|.+-++.-||
T Consensus 107 k~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~~~~--eva~--------------------~-~~~~Tr~~~eRI~r 163 (348)
T COG0473 107 KSLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRILGGG--EVAI--------------------D-TKVITRKGSERIAR 163 (348)
T ss_pred ccCCCCCCccCCCccEEEEeeCCCccccCCCccccCCC--eEEE--------------------E-EEeccHHHHHHHHH
Confidence 46776655442 2578999999999987554322222 1111 1 12356667788888
Q ss_pred Hhhhchh
Q psy12302 295 SSFQVSF 301 (303)
Q Consensus 295 s~Fq~al 301 (303)
--|++|.
T Consensus 164 ~AFe~A~ 170 (348)
T COG0473 164 FAFELAR 170 (348)
T ss_pred HHHHHHH
Confidence 8888875
No 29
>KOG0785|consensus
Probab=91.01 E-value=0.38 Score=47.16 Aligned_cols=99 Identities=22% Similarity=0.276 Sum_probs=71.2
Q ss_pred ccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecceeec
Q psy12302 138 DVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIICK 217 (303)
Q Consensus 138 Dv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePIi~k 217 (303)
.++|+.-|++-.--..|.--++-++.+.+++.+||+|-+--||-- |--.|||=++|.-+|=----+| |+
T Consensus 64 pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~tPi~---------kgh~S~nl~LRK~f~LyANVRP--c~ 132 (365)
T KOG0785|consen 64 PIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVATPIG---------KGHRSLNLALRKEFGLYANVRP--CK 132 (365)
T ss_pred CcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCcccCccc---------cccccHHHHHHHHhchhcccee--cc
Confidence 567788888755444477789999999999999999999999853 3455999999999997666666 77
Q ss_pred CCCCCCCCccc-ceEEEeeccCccccceeeE
Q psy12302 218 NIPKIVPGWTN-SIVIGRHAHGDQYKATDLI 247 (303)
Q Consensus 218 nIp~iVpgW~~-pIvIgRHA~GDQYKAtD~v 247 (303)
.|+..-..+.+ -+|+=|..-.+.|...|..
T Consensus 133 SieG~Kt~Y~~vD~V~IRENTEgeYsgiEh~ 163 (365)
T KOG0785|consen 133 SIEGYKTPYDDVDLVIIRENTEGEYSGIEHQ 163 (365)
T ss_pred cccCCcCCCCCceEEEEecCCccccccceee
Confidence 77765543332 2455555555555554443
No 30
>KOG0784|consensus
Probab=89.61 E-value=0.6 Score=46.09 Aligned_cols=105 Identities=26% Similarity=0.278 Sum_probs=79.0
Q ss_pred ccccceeeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecceeec
Q psy12302 138 DVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIICK 217 (303)
Q Consensus 138 Dv~~~yyDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePIi~k 217 (303)
.|+++.|+++=.+-+ .+...-+|.++|||.+|++|-.-=||+. +.--.|-|-.+|+-|+=-++ =+-|+
T Consensus 71 PV~fE~i~v~~~~~~--~~~~~~e~v~Si~rNkValkG~i~t~~~--------~g~~~s~n~~LR~~LDLyan--vv~~~ 138 (375)
T KOG0784|consen 71 PVEFEEIEVSGSNKE--SSEDLDEAVESIKRNKVALKGNIETPDL--------PGGAKSLNVKLRKELDLYAN--VVHCK 138 (375)
T ss_pred CeeEEEEEccCCccc--cchhHHHHHHHHHhcceeEeecccCCCC--------ccchhhhHHHHHHhhhhhhh--eeeee
Confidence 788899999863322 2334678999999999999999999933 22346788899999985544 45699
Q ss_pred CCCCCCCCccc-ceEEEeeccCccccceeeEecCCceEE
Q psy12302 218 NIPKIVPGWTN-SIVIGRHAHGDQYKATDLIVDKPGKVE 255 (303)
Q Consensus 218 nIp~iVpgW~~-pIvIgRHA~GDQYKAtD~vV~GpGk~e 255 (303)
++|.+..--.+ -|+|=|.---+.|..-|..+ -||.+|
T Consensus 139 slpG~~tRh~~vDiviIRENTEGEYs~LEHE~-VpGVVE 176 (375)
T KOG0784|consen 139 SLPGVKTRHENVDIVIIRENTEGEYSGLEHES-VPGVVE 176 (375)
T ss_pred ccCCcccccCCccEEEEecCCccccccccccc-Ccchhh
Confidence 99998754443 47788888888888888864 687665
No 31
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=42.91 E-value=36 Score=30.69 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=34.9
Q ss_pred eeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHH
Q psy12302 144 YDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVK 186 (303)
Q Consensus 144 yDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVk 186 (303)
+=|-|-||-.-|+.||--.|.+.+.+|+. +.--+|||+++.+
T Consensus 4 ~vlrlghr~~rd~ritthvartARafGa~-~~yiv~~~~~q~~ 45 (176)
T PRK03958 4 VVLRLGHRPERDKRITTHVGLTARALGAD-KIILASNDEHVKE 45 (176)
T ss_pred EEEecCCCcccccchhhHHHHHHHHcCCc-eEEEecCcHHHHH
Confidence 34678899999999999999999999985 4555699988765
No 32
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=37.52 E-value=18 Score=29.98 Aligned_cols=21 Identities=48% Similarity=0.746 Sum_probs=15.8
Q ss_pred ccccccCchhhHHHhhhcccc
Q psy12302 173 IKCATITPDEARVKEFKLKKM 193 (303)
Q Consensus 173 iKCATITPdeaRVkEf~LKkm 193 (303)
+|--.|||+||+++.|+|.++
T Consensus 3 lkfg~It~eeA~~~QYeLsk~ 23 (88)
T PF11491_consen 3 LKFGNITPEEAMVKQYELSKN 23 (88)
T ss_dssp EE--S-TTTTTHHHHHTTTTT
T ss_pred cccCCCCHHHHHHHHHHhhcc
Confidence 455679999999999999885
No 33
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=35.66 E-value=69 Score=25.76 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=21.1
Q ss_pred ccccceeeEecCCceEEEEEEcCCCceE
Q psy12302 239 DQYKATDLIVDKPGKVELVYTDNQGKVQ 266 (303)
Q Consensus 239 DQYKAtD~vV~GpGk~eLVyt~~~g~~~ 266 (303)
|-|=.=.+...++|+++++++|++|+..
T Consensus 67 NP~l~F~~~~~~~g~l~v~~~Dn~G~~~ 94 (100)
T PF08770_consen 67 NPYLRFSFKGKKSGTLTVTWTDNKGNSF 94 (100)
T ss_dssp S-EEEEEEEESSSEEEEEEEEETTS-EE
T ss_pred CCcEEEEEecCCCcEEEEEEEECCCCEE
Confidence 5555666777889999999999999644
No 34
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=34.89 E-value=48 Score=26.11 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=47.3
Q ss_pred ccccCCChhHHH-HHHHHHHhcccccccccCchhhHHHhhhccc--ccCCchhhhhhhc-CCeEeecceeecCCCCCCCC
Q psy12302 150 HRDATEDQVTVD-AAVAIKKHNVGIKCATITPDEARVKEFKLKK--MWLSPNGTIRNIL-GGTVFREPIICKNIPKIVPG 225 (303)
Q Consensus 150 ~RD~T~DqVtvD-AA~Aikk~~VgiKCATITPdeaRVkEf~LKk--mw~SPNGtIRniL-gGTVFRePIi~knIp~iVpg 225 (303)
-+|..++..+.+ -.+.+.+.|.|++-. +.......++.+|++ -..|.+..+.-++ .++.+++|||..+=-+++.|
T Consensus 28 ~idi~~~~~~~~el~~l~~~~~~~~~~l-in~~~~~~k~l~~~~~~~~ls~~e~~~~i~~~p~LikRPIi~~~~~~~~vG 106 (117)
T TIGR01617 28 FIDIGEDGPTREELLDILSLLEDGIDPL-LNTRGQSYRALNTSNTFLDLSDKEALELLAEDPALLRRPLIVDTKNRLLIG 106 (117)
T ss_pred EEecCCChhhHHHHHHHHHHcCCCHHHh-eeCCCcchhhCCchhhcccCCHHHHHHHHHhCcceEecCEEEeCCceEEec
Confidence 344445556555 344556777777644 344556677888753 3457788777766 68999999998632233344
Q ss_pred c
Q psy12302 226 W 226 (303)
Q Consensus 226 W 226 (303)
|
T Consensus 107 ~ 107 (117)
T TIGR01617 107 F 107 (117)
T ss_pred C
Confidence 4
No 35
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=34.86 E-value=39 Score=28.21 Aligned_cols=94 Identities=26% Similarity=0.288 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcccccc----cccCchhhHHHhhhcccccCCc----hhhhhhhcCCeEeecc-----eeecCCCCCCCC-
Q psy12302 160 VDAAVAIKKHNVGIKC----ATITPDEARVKEFKLKKMWLSP----NGTIRNILGGTVFREP-----IICKNIPKIVPG- 225 (303)
Q Consensus 160 vDAA~Aikk~~VgiKC----ATITPdeaRVkEf~LKkmw~SP----NGtIRniLgGTVFReP-----Ii~knIp~iVpg- 225 (303)
+||..|..=|.--=+. .+-.-+...--.+++|++|..+ +..|....+|....-| |++-|||..-.|
T Consensus 10 ~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~~~~~~~~~~~i~l~~dg~~~~lp~~~~~iv~lNIpSy~gG~ 89 (161)
T PF00609_consen 10 VDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALFQRSCKNLPKKIELEVDGKEVDLPSSLESIVFLNIPSYGGGV 89 (161)
T ss_pred HhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHHhchhcCchhhcccccCCeeEeeecceeEEEEEccccccCCc
Confidence 5666665544322221 2222233334467888888433 4668888899999888 999999998764
Q ss_pred --cccceEEEeeccCccccceeeEecCCceEEEEEE
Q psy12302 226 --WTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYT 259 (303)
Q Consensus 226 --W~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt 259 (303)
|..+---++. ..|+..+ -+.|++|++-.
T Consensus 90 ~~W~~~~~~~~~---~~~~~~~---~~Dg~lEVvg~ 119 (161)
T PF00609_consen 90 DLWGNSKPDRSK---LKFKKQS---MDDGKLEVVGF 119 (161)
T ss_pred ccccCCcccccc---ccccccc---ccCceEEEEEE
Confidence 5433211110 1233322 26789997743
No 36
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=33.85 E-value=29 Score=26.94 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=45.4
Q ss_pred ccccCCChhHHHHH-HHHHHhcccccccccCchhhHHHhhh-cccccCCchhhhhhhc-CCeEeecceeecC
Q psy12302 150 HRDATEDQVTVDAA-VAIKKHNVGIKCATITPDEARVKEFK-LKKMWLSPNGTIRNIL-GGTVFREPIICKN 218 (303)
Q Consensus 150 ~RD~T~DqVtvDAA-~Aikk~~VgiKCATITPdeaRVkEf~-LKkmw~SPNGtIRniL-gGTVFRePIi~kn 218 (303)
-||...+.+|.+-. +.+.+.|+|++-. |.+.....++.+ ++....|.+-.+.-+. .++.+++|||+..
T Consensus 25 ~~d~~k~p~s~~el~~~l~~~~~~~~~l-in~~~~~~k~l~~~~~~~~s~~e~i~~l~~~p~LikRPIi~~~ 95 (110)
T PF03960_consen 25 FIDYKKEPLSREELRELLSKLGNGPDDL-INTRSKTYKELGKLKKDDLSDEELIELLLENPKLIKRPIIVDG 95 (110)
T ss_dssp EEETTTS---HHHHHHHHHHHTSSGGGG-B-TTSHHHHHTTHHHCTTSBHHHHHHHHHHSGGGB-SSEEEET
T ss_pred eehhhhCCCCHHHHHHHHHHhcccHHHH-hcCccchHhhhhhhhhhhhhhHHHHHHHHhChhheeCCEEEEC
Confidence 34455666666554 4566778787654 467777888888 7777778877777766 7899999999875
No 37
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=32.36 E-value=44 Score=30.08 Aligned_cols=98 Identities=19% Similarity=0.265 Sum_probs=56.6
Q ss_pred ChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecceeec-CCCCCCCCcccceEEEe
Q psy12302 156 DQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIICK-NIPKIVPGWTNSIVIGR 234 (303)
Q Consensus 156 DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePIi~k-nIp~iVpgW~~pIvIgR 234 (303)
+.+|.+...-+.+|+=|+=|+.++ ++|.++.+|..|+..... -.||-|.-++=.. ++.-=++.-...-.|-+
T Consensus 33 e~~t~e~v~fm~~~~~Glicva~~--~~~~~~L~L~~m~~~~~~-----~~~~~ftvsVD~~~g~~TGISa~DRa~Tir~ 105 (194)
T PF00926_consen 33 EFVTPEKVNFMIRHASGLICVAMP--EERADRLGLPPMVPDNTD-----PHGTAFTVSVDAAKGTTTGISAADRARTIRA 105 (194)
T ss_dssp GG--HHHHHHHHHHBCSEEEEEEE--HHHHHHTT-SBSCSSCCT-----TTS--BBCEEEESSS-SSSSSHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHhcCCCeEecCC--HHHHhHCCCCCCCCcCCC-----CCCCCeeEeeecCCCCCCCcCHHHHHHHHHH
Confidence 678999999999999999999998 567889999999972111 1177887765422 13222222222222222
Q ss_pred eccCccccceeeEecCCceEEEEEEcCCC
Q psy12302 235 HAHGDQYKATDLIVDKPGKVELVYTDNQG 263 (303)
Q Consensus 235 HA~GDQYKAtD~vV~GpGk~eLVyt~~~g 263 (303)
=|- ..=+..||+ .||.+-......+|
T Consensus 106 La~-~~~~~~df~--~PGHv~Pl~a~~gG 131 (194)
T PF00926_consen 106 LAD-PDAFPEDFV--RPGHVFPLRARPGG 131 (194)
T ss_dssp HHS-TTGHGGGEE--EEEEEEEEEE-TTG
T ss_pred HhC-CCCCHHHcC--CCCCCccceecCCc
Confidence 221 224566776 48888777766655
No 38
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair]
Probab=29.51 E-value=22 Score=35.62 Aligned_cols=44 Identities=34% Similarity=0.482 Sum_probs=32.4
Q ss_pred HHHHhccccccccc--CchhhHHHhhhcccccCCchhhhhhhcCCeEee
Q psy12302 165 AIKKHNVGIKCATI--TPDEARVKEFKLKKMWLSPNGTIRNILGGTVFR 211 (303)
Q Consensus 165 Aikk~~VgiKCATI--TPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFR 211 (303)
-.+|.||.+--++| --|..| -.+||..+|-|+.||+||+|.+++
T Consensus 337 ~~~klg~~i~i~~ie~~~~g~~---~~~kk~y~~ttd~i~~il~g~~~~ 382 (382)
T COG1423 337 HLKKLGVHIEIKEIEELKDGER---VTFKKVYKSTTDKIRRILEGGLWV 382 (382)
T ss_pred HHHHhCCceEEEeeeeccCceE---EEEEecccCcchHHHHHhcCCccC
Confidence 35778888643333 333434 578999999999999999998763
No 39
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=28.84 E-value=48 Score=31.88 Aligned_cols=83 Identities=22% Similarity=0.391 Sum_probs=50.9
Q ss_pred eeCCCCccccCCChhHHHHHHHHHHhcccccccccCchhhHHHhhhcccccCCchhhhhhhcCCeEeecceeecC---CC
Q psy12302 144 YDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIICKN---IP 220 (303)
Q Consensus 144 yDLgl~~RD~T~DqVtvDAA~Aikk~~VgiKCATITPdeaRVkEf~LKkmw~SPNGtIRniLgGTVFRePIi~kn---Ip 220 (303)
=|+|++..+..+.-+..|+|+++-|.-. |.-+- | -.|++|+.+ |.+|+++ +-
T Consensus 90 ~e~gI~ye~~e~g~~v~ds~e~~skl~~------------~a~~a----------G--aki~n~~~v-eDvi~r~~~rVa 144 (262)
T COG1635 90 DEFGIRYEEEEDGYYVADSAEFASKLAA------------RALDA----------G--AKIFNGVSV-EDVIVRDDPRVA 144 (262)
T ss_pred HHhCCcceecCCceEEecHHHHHHHHHH------------HHHhc----------C--ceeeecceE-EEEEEecCCceE
Confidence 4889999999999999999998766422 21111 1 246777765 4555554 44
Q ss_pred CCCCCcccceEEEeeccCc-cccceeeEecCCce
Q psy12302 221 KIVPGWTNSIVIGRHAHGD-QYKATDLIVDKPGK 253 (303)
Q Consensus 221 ~iVpgW~~pIvIgRHA~GD-QYKAtD~vV~GpGk 253 (303)
.+|-+|+- +... |-|-| .+-.++.+||..|.
T Consensus 145 GvVvNWt~-V~~~-~lhvDPl~i~a~~VvDaTGH 176 (262)
T COG1635 145 GVVVNWTP-VQMA-GLHVDPLTIRAKAVVDATGH 176 (262)
T ss_pred EEEEecch-hhhc-ccccCcceeeEEEEEeCCCC
Confidence 56789983 2222 13333 33445567777663
No 40
>COG4110 Uncharacterized protein involved in stress response [General function prediction only]
Probab=27.01 E-value=32 Score=31.74 Aligned_cols=29 Identities=41% Similarity=0.879 Sum_probs=25.6
Q ss_pred cCCeEEecCcchh------------HHHHHHHHhhhcccch
Q psy12302 40 KNPVVEMDGDEMT------------RIIWENIKEKLIFPYV 68 (303)
Q Consensus 40 ~nPvVemdGDEMT------------Riiw~~IkekLI~Pyv 68 (303)
.+|.|++|||.-| +--|..||+-||+.|+
T Consensus 80 ~~Pyi~LdgDDRtG~~~dGE~l~Ing~~~khik~vLi~aFI 120 (200)
T COG4110 80 DEPYVQLDGDDRTGDVSDGEWLHINGREWKHIKEVLIYAFI 120 (200)
T ss_pred cCceEEecCCcCCCcccCCceEEEcchhhhhhhheeeEEEE
Confidence 5899999999865 5679999999999998
No 41
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=26.00 E-value=1.2e+02 Score=23.45 Aligned_cols=34 Identities=24% Similarity=0.541 Sum_probs=24.8
Q ss_pred CCCCCCCCcccceEEEeeccCccccceeeEecCCceEEEEEEcCCCc
Q psy12302 218 NIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGK 264 (303)
Q Consensus 218 nIp~iVpgW~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~ 264 (303)
++| +-+||+.-+++=+.+ .+.|+.++.|....|+
T Consensus 5 ~~P-lp~GW~R~~~~r~~g------------~~~~~~dV~Y~sP~Gk 38 (77)
T smart00391 5 RLP-LPCGWRRETKQRKSG------------RSAGKFDVYYISPCGK 38 (77)
T ss_pred cCC-CCCCcEEEEEEecCC------------CCCCcccEEEECCCCC
Confidence 578 888999988875543 2466777888777775
No 42
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=24.07 E-value=1.6e+02 Score=22.90 Aligned_cols=34 Identities=29% Similarity=0.719 Sum_probs=24.8
Q ss_pred CCCCCCCCcccceEEEeeccCccccceeeEecCCceEEEEEEcCCCc
Q psy12302 218 NIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGK 264 (303)
Q Consensus 218 nIp~iVpgW~~pIvIgRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~ 264 (303)
++|++-+||+.-+++=+.. ..|+..+.|....|+
T Consensus 3 ~~~~lp~GW~r~~~~R~~g-------------s~~k~DvyY~sP~Gk 36 (77)
T cd01396 3 EDPRLPPGWKRELVPRKSG-------------SAGKFDVYYISPTGK 36 (77)
T ss_pred CCCCCCCCCEEEEEEecCC-------------CCCcceEEEECCCCC
Confidence 6899999999888875443 246667777776674
No 43
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=23.09 E-value=1.6e+02 Score=24.19 Aligned_cols=51 Identities=31% Similarity=0.431 Sum_probs=24.0
Q ss_pred EeeccCccccceeeEecCCceEEEEEEcCCCceEEEEEEee-----cCCCeEEEeccChh
Q psy12302 233 GRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEF-----KTPGVALAMYNTTE 287 (303)
Q Consensus 233 gRHA~GDQYKAtD~vV~GpGk~eLVyt~~~g~~~~~~v~~f-----k~~GVal~myNt~e 287 (303)
|-|||- +.+++.+--.|++++...+..++ +++..-+= =.||++-+|+|..+
T Consensus 47 G~H~Hk---~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ippg~w~~~~~~s~ 102 (131)
T PF05523_consen 47 GWHAHK---KTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIPPGVWHGIKNFSE 102 (131)
T ss_dssp EEEEES---S--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-TT-EEEEE---T
T ss_pred cccccc---cccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEECCchhhHhhccCC
Confidence 667774 55666677789999887654332 33332111 13677777765543
No 44
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=21.32 E-value=99 Score=24.61 Aligned_cols=66 Identities=21% Similarity=0.244 Sum_probs=44.2
Q ss_pred cccCCChhHHHHHHHHHHhcccccc--cccCchhhHHHhhhcccccCCchhhhhhhc-CCeEeecceeec
Q psy12302 151 RDATEDQVTVDAAVAIKKHNVGIKC--ATITPDEARVKEFKLKKMWLSPNGTIRNIL-GGTVFREPIICK 217 (303)
Q Consensus 151 RD~T~DqVtvDAA~Aikk~~VgiKC--ATITPdeaRVkEf~LKkmw~SPNGtIRniL-gGTVFRePIi~k 217 (303)
||-.++..|.+--..+.+. +|+.. .=+...+...++.+++.-..|.+-.+.-+. +++.+++|||+.
T Consensus 29 ~di~~~p~t~~el~~~l~~-~g~~~~~~lin~~~~~~~~l~~~~~~ls~~e~i~~l~~~P~LikRPIi~~ 97 (114)
T TIGR00014 29 VKYLKNPPTKSELEAIFAK-LGLTVAREMIRTKEALYKELGLSDPNLSDQELLDAMVAHPILLERPIVVA 97 (114)
T ss_pred EeccCCCcCHHHHHHHHHH-cCCchHHHHHhcCCcHHHHcCCCccCCCHHHHHHHHHHCcCcccCCeEEE
Confidence 5566677777766665554 34432 135667777778777765567676666555 789999999975
Done!