RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12302
(303 letters)
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation,
thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A
{Desulfotalea psychrophila} PDB: 2uxr_A*
Length = 402
Score = 220 bits (562), Expect = 1e-69
Identities = 80/171 (46%), Positives = 112/171 (65%)
Query: 131 QIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKL 190
+++ ID++ YYDLG+ RD T DQ+T+DAA AIKK+ VG+K ATITP++ RV+E+ L
Sbjct: 28 KLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDRVEEYGL 87
Query: 191 KKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDK 250
K+ W SPN T+R +L GTVFR+PI+ KNI V W IV+GRHA+GD YK ++ +
Sbjct: 88 KEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEA 147
Query: 251 PGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVSF 301
GK+E+V TD GK + E P + ++NT SI FA + F+ S
Sbjct: 148 GGKLEIVVTDKNGKETRQTIMEVDEPAIVQGIHNTVASIGHFARACFEYSL 198
Score = 70.2 bits (171), Expect = 8e-14
Identities = 18/35 (51%), Positives = 28/35 (80%)
Query: 36 RIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKV 70
+I K P+VE+DGDEMTR++W IK+KL+ P++ +
Sbjct: 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDL 36
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics;
2.25A {Sinorhizobium meliloti}
Length = 427
Score = 219 bits (559), Expect = 5e-69
Identities = 102/171 (59%), Positives = 127/171 (74%)
Query: 131 QIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKL 190
++I +D++ YYDLG+ +RDAT+DQVT+DAA AIKKH VG+KCATITPDE RV+EFKL
Sbjct: 52 KLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPDEGRVEEFKL 111
Query: 191 KKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDK 250
KKMW SPNGTIRNILGG +FREPIICKN+P++VPGWT I++GRHA GDQY+ATD
Sbjct: 112 KKMWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPG 171
Query: 251 PGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVSF 301
GK+ + + G+ V++ GVALAMYN ESI FA +SF
Sbjct: 172 KGKLSIKFVGEDGQTIEHDVYDAPGAGVALAMYNLDESITEFARASFNYGL 222
Score = 75.6 bits (185), Expect = 1e-15
Identities = 23/39 (58%), Positives = 31/39 (79%)
Query: 32 ATDSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKV 70
+ ++I NPVVE+DGDEMTRIIW+ IK+KLI PY+ +
Sbjct: 22 SMMAKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDL 60
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature
adaptation, thermophilic, psychr NADP+ selectivity,
domain movements; 2.35A {Clostridium thermocellum} PDB:
4aou_A
Length = 402
Score = 218 bits (556), Expect = 8e-69
Identities = 90/171 (52%), Positives = 114/171 (66%)
Query: 131 QIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKL 190
++ I++ YYDLGL +RD TEDQVT+DAA AI+K+ VG+KCATITP+ RV+E+ L
Sbjct: 29 NLLEPYIELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNAQRVEEYNL 88
Query: 191 KKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDK 250
KKMW SPNGTIR IL GTVFR PI+ +I V GW I I RHA+GD YK + V
Sbjct: 89 KKMWKSPNGTIRAILDGTVFRAPIVVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPS 148
Query: 251 PGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVSF 301
GK ELV+T G+V + EF PGV + M+NT +SI SFA + F +
Sbjct: 149 AGKAELVFTSENGEVSRQTIHEFDGPGVIMGMHNTDKSIRSFARACFNYAL 199
Score = 72.9 bits (178), Expect = 1e-14
Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 35 SRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKV 70
S+I K P+VEMDGDEMTRIIW IKE L+ PY+++
Sbjct: 2 SKIKMKVPLVEMDGDEMTRIIWRLIKENLLEPYIEL 37
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase;
HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A*
2qfx_A* 2qfv_A*
Length = 427
Score = 219 bits (558), Expect = 9e-69
Identities = 110/174 (63%), Positives = 133/174 (76%), Gaps = 3/174 (1%)
Query: 131 QIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKL 190
++I +DV+ YYDL + RDAT D++T DAA AIKK+ VGIKCATITPDEARVKEF L
Sbjct: 44 KLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDEARVKEFNL 103
Query: 191 KKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDK 250
KMW SPNGTIRNILGGTVFREPI+ IP++VP W I+IGRHAHGDQYKATD ++
Sbjct: 104 HKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPG 163
Query: 251 PGKVELVYTDNQGKV---QTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVSF 301
PG +ELVY + QT KV+++K GVA+AMYNT ESIE FAHSSF+++
Sbjct: 164 PGSLELVYKPSDPTTAQPQTLKVYDYKGSGVAMAMYNTDESIEGFAHSSFKLAI 217
Score = 73.3 bits (179), Expect = 9e-15
Identities = 25/49 (51%), Positives = 31/49 (63%)
Query: 22 NVSFFFVFQDATDSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKV 70
+ S+I K PVVE+DGDEMTRIIW+ IK+KLI PY+ V
Sbjct: 4 HHHHAMGIPGHAFSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDV 52
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase,
NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB:
1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A*
2cmj_A* 2cmv_A*
Length = 413
Score = 216 bits (552), Expect = 4e-68
Identities = 109/172 (63%), Positives = 136/172 (79%), Gaps = 1/172 (0%)
Query: 131 QIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKL 190
++I +DV+ Y+DLGLP+RD T DQVT+D+A+A +K++V +KCATITPDEARV+EFKL
Sbjct: 30 KLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKL 89
Query: 191 KKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDK 250
KKMW SPNGTIRNILGGTVFREPIICKNIP++VPGWT I IGRHAHGDQYKATD +VD+
Sbjct: 90 KKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDR 149
Query: 251 PGKVELVYTDNQGK-VQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVSF 301
G ++V+T G + ++V+ F GV + MYNT ESI FAHS FQ +
Sbjct: 150 AGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAI 201
Score = 73.2 bits (179), Expect = 8e-15
Identities = 27/37 (72%), Positives = 29/37 (78%)
Query: 34 DSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKV 70
D RI PVVEMDGDEMTRIIW+ IKEKLI P+V V
Sbjct: 2 DQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDV 38
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline,
thermostable, oxidoreductase; 2.24A {Thermotoga
maritima}
Length = 399
Score = 208 bits (530), Expect = 6e-65
Identities = 86/171 (50%), Positives = 118/171 (69%), Gaps = 2/171 (1%)
Query: 131 QIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKL 190
++I +D++ +Y+DLG+ RD T+DQ+T++AA AIKK+ VG+KCATITPD RVKE+ L
Sbjct: 29 KLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDAERVKEYNL 88
Query: 191 KKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDK 250
KK W SPN TIR L GTVFR+PI+ KN+P +V W I+IGRHA+GD Y A + V+
Sbjct: 89 KKAWKSPNATIRAYLDGTVFRKPIMVKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEG 148
Query: 251 PGKVELVYTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQVSF 301
P +VELV + + K T V +F+ GV +AM+N +SI SFA S +
Sbjct: 149 PAEVELVVRNKENK--TLLVHKFEGNGVVMAMHNLEKSIRSFAQSCINYAI 197
Score = 73.3 bits (179), Expect = 8e-15
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 35 SRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKV 70
++ KNP+VE+DGDEM R++W+ IKEKLI PY+ +
Sbjct: 2 EKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDI 37
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 4e-05
Identities = 44/301 (14%), Positives = 81/301 (26%), Gaps = 86/301 (28%)
Query: 12 EKQLCYQ--IDTNVSFF---FVFQDATDS-RIVAKNPVVE---MDGDEMTRIIWENIKEK 62
E Q Y+ + F F +D D + + ++ M D ++
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT-------L 65
Query: 63 LIFPYVKVCMSIIIFNK----FQAFLLFPEKSEEMNLEW----IKIPCLQCSDKAKMFFL 114
+F + +K Q F+ E+ +N ++ IK Q S +M+
Sbjct: 66 RLF--------WTLLSKQEEMVQKFV---EEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 115 SSSLKHG----FMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVD--------- 161
+ F + SR+Q + + L V +D
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLR--QALL-------ELRPAKNVLIDGVLGSGKTW 165
Query: 162 -AAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLS------PNGTIRNILGGTVFREPI 214
A + K WL+ P + +
Sbjct: 166 VALDVCL-------------SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-------- 204
Query: 215 ICKNI-PKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKVQTFKVFEF 273
+ I P +S I H Q + L+ KP + L+ N + + F
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 274 K 274
Sbjct: 265 S 265
Score = 41.4 bits (96), Expect = 4e-04
Identities = 51/291 (17%), Positives = 90/291 (30%), Gaps = 96/291 (32%)
Query: 5 CIEPILLEKQLCYQIDTNVSFFFVFQDATDSRIVAKNPVVEMDGDEMTRIIWENIKEKLI 64
+EP K + VF + I ++ +IW ++ +
Sbjct: 365 VLEPAEYRK--MFDR------LSVFPP--SAHIPTI--LLS--------LIWFDVIKS-- 402
Query: 65 FPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKMFFLSSSLKHGFMY 124
M ++ NK + L ++ +E I IP + K K+ + H
Sbjct: 403 -----DVMVVV--NKLHKYSLVEKQPKEST---ISIPSIYLELKVKL--ENEYALH---- 446
Query: 125 FMASRIQIIS--NIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDE 182
I+ NI DL P+ D H +G I E
Sbjct: 447 -----RSIVDHYNIPKTFD-SDDLIPPYLDQY-----------FYSH-IGHHLKNIEHPE 488
Query: 183 ARVKEF------------KLKKMWLSPN--GTIRNILGGTVFREPIICKNIP-------- 220
R+ F K++ + N G+I N L F +P IC N P
Sbjct: 489 -RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 221 --KIVPGWTNSIVIGRHAHGDQYKATDLI---VDKPGKVELVYTDNQGKVQ 266
+P +++ ++ TDL+ + E ++ + +VQ
Sbjct: 548 ILDFLPKIEENLICSKY--------TDLLRIALMAED--EAIFEEAHKQVQ 588
Score = 33.3 bits (75), Expect = 0.098
Identities = 48/319 (15%), Positives = 93/319 (29%), Gaps = 106/319 (33%)
Query: 1 DVRICIEP-ILLEKQ--LCYQIDTNVSFFFVFQDATDSRIVAKNPVVEMDGDEMTRIIWE 57
+++ C P +LE L YQID N D ++
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQID-------------------PNWTSRSDHSSNIKLRIH 228
Query: 58 NIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKMFFLSSS 117
+I+ +L + S
Sbjct: 229 SIQAEL----------------------------------------------RRLLKSKP 242
Query: 118 LKHGFMYFMASRIQIISNIIDVECL-YYDLG----LPHRDATEDQVTVDAAVAIKKHNVG 172
++ + ++ N+ + + ++L L R QVT + A H
Sbjct: 243 YENCLL--------VLLNVQNAKAWNAFNLSCKILLTTRFK---QVTDFLSAATTTHISL 291
Query: 173 IKCA-TITPDEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIV 231
+ T+TPDE K LK + P R +L R II ++I + W N
Sbjct: 292 DHHSMTLTPDEV--KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW-- 347
Query: 232 IGRHAHGDQYKAT-DLIVD--KPGKVELVYTDNQGKVQTFKVFE--FKTPGVALAMY--- 283
+H + D+ + ++ +P + ++ VF P + L++
Sbjct: 348 --KHVNCDKLTTIIESSLNVLEPAEYRKMFDR-------LSVFPPSAHIPTILLSLIWFD 398
Query: 284 NTTESIESFAHSSFQVSFI 302
+ + + S +
Sbjct: 399 VIKSDVMVVVNKLHKYSLV 417
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.69
Identities = 18/91 (19%), Positives = 22/91 (24%), Gaps = 62/91 (68%)
Query: 88 EKSEEMNLEWIKIPCLQCSDKAKMFFLSSSLKHGFMYFMASRIQIISNIIDVECLYYDLG 147
EK +K K L +SLK LY D
Sbjct: 18 EKQA------LK----------K---LQASLK----------------------LYADDS 36
Query: 148 LPHRDATEDQVTVDAAVAIKKHNVGIKCATI 178
P A+AIK AT+
Sbjct: 37 AP-------------ALAIK--------ATM 46
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 30.1 bits (68), Expect = 0.88
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 6/43 (13%)
Query: 240 QYKATDLIVDKPGKVE-LVYTDNQGKVQTFKVFEFKTPGVALA 281
+ ++ D GKV ++ K V +A
Sbjct: 275 NSRVVRILEDASGKVTGVLVKGEYTGYYV-----IKADAVVIA 312
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 1.0
Identities = 39/274 (14%), Positives = 76/274 (27%), Gaps = 110/274 (40%)
Query: 37 IVAKNP--VVEMDGDEMTRIIWEN-------------IKEKLIFPYVKVCMSIIIFNKFQ 81
IV NP + G E + I EN +K + IF + + F
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS-- 1721
Query: 82 AFLLFPEKSEEMNLEWIKIPCLQCSDKAKMFFLSSSL-----KHGFM---YFMA--SRIQ 131
+ ++ P + + + G + A S
Sbjct: 1722 -----EK--GLLSATQFTQPA--------LTLMEKAAFEDLKSKGLIPADATFAGHS--- 1763
Query: 132 IISNIIDVECLYYDLGLPHRDATE--------DQVTVDAAVAIKKHNV---GIKCATITP 180
LG E D +++++ V + V G+ P
Sbjct: 1764 --------------LG-------EYAALASLADVMSIESLVEV----VFYRGMTMQVAVP 1798
Query: 181 -DEARVKEFKLKKMWLSPNGTIRNILGGTVFREPIICKNIPK-------IV----PGWTN 228
DE + + + ++P G + + + + + K IV
Sbjct: 1799 RDELGRSNYGM--IAINP-GRVAASFSQEALQY--VVERVGKRTGWLVEIVNYNVENQQ- 1852
Query: 229 SIVIGRHAHGDQYKATDLIVD-----KPGKVELV 257
V GD +A D + + K K++++
Sbjct: 1853 -YVAA----GDL-RALDTVTNVLNFIKLQKIDII 1880
Score = 30.0 bits (67), Expect = 1.3
Identities = 43/276 (15%), Positives = 84/276 (30%), Gaps = 107/276 (38%)
Query: 20 DTNVSF-----------FFV---FQDATDSRIVAKNPVVE-MDGDE-----MTRIIWENI 59
D+ SF FF+ +A + + + + + ++ +E M I N+
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI--SNL 344
Query: 60 KEKLIFPYVKVC---------MSIIIFNKFQAFLL--FPE--KSEEMNLEWIKIP--CLQ 104
++ + YV + I + N + ++ P+ + L K P Q
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 105 C----SDKAKMF---FLS------SSLKHGFMYFMASRIQIISN---IIDVECLYYDLGL 148
S++ F FL S L + +I+ +V D+ +
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSHL-------LVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 149 P--H-------RDATE-------DQVTV-----DAAVAIKKHNV---------GIKCATI 178
P R + D + + K ++ G+ +
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL--GVL 515
Query: 179 TPDEARVKEFKLKKMWLSPNGT-IRNILGGTVFREP 213
T R K+ GT +R I+ GT+ P
Sbjct: 516 T---HRNKD-----------GTGVRVIVAGTLDINP 537
>3q8d_A DNA repair protein RECO; OB-fold, recombination initation, recom
initiation, SSB, RECR; HET: DNA CPS; 2.30A {Escherichia
coli}
Length = 242
Score = 29.5 bits (66), Expect = 1.1
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 11/41 (26%)
Query: 225 GWTNSIVIGRHAHGDQYKATDLIVDKPGKVELVYTDNQGKV 265
GW + V+ + T L++D V+T+ G+V
Sbjct: 3 GWQRAFVLHSRPWSE----TSLMLD-------VFTEESGRV 32
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 29.7 bits (67), Expect = 1.5
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 240 QYKATDLIVDKPGKVE-LVYTDNQGKVQTFKVFEFKTPGVALA 281
+ +++ D G V+ ++ K V LA
Sbjct: 275 NTRGIEVLKDDKGTVKGILVKGMYKGYYW-----VKADAVILA 312
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 28.1 bits (63), Expect = 3.7
Identities = 7/41 (17%), Positives = 10/41 (24%), Gaps = 6/41 (14%)
Query: 242 KATDLIVDKPGKVE-LVYTDNQGKVQTFKVFEFKTPGVALA 281
+ L+V+ V V V LA
Sbjct: 272 RVVKLVVNDDHSVVGAVVHGKHTGYYM-----IGAKSVVLA 307
>4frf_A Inositol polyphosphate multikinase alpha; ATP grAsp, inositol
phosphate kinase, transferase; 2.90A {Arabidopsis
thaliana}
Length = 275
Score = 27.8 bits (61), Expect = 4.4
Identities = 12/62 (19%), Positives = 25/62 (40%)
Query: 77 FNKFQAFLLFPEKSEEMNLEWIKIPCLQCSDKAKMFFLSSSLKHGFMYFMASRIQIISNI 136
FN +++ +S + P ++ D A + + + H F+ + S I I I
Sbjct: 206 FNSCSILMVYENESILKGNDDDARPQVKLVDFAHVLDGNGVIDHNFLGGLCSFINFIREI 265
Query: 137 ID 138
+
Sbjct: 266 LQ 267
>3nm9_A HMG-D, high mobility group protein D; DNA bending,
non-sequence-specific, HMG chromosomal protein; HET:
DNA; 2.85A {Drosophila melanogaster} PDB: 1e7j_A*
1hma_A 1qrv_A*
Length = 73
Score = 25.7 bits (57), Expect = 5.0
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 26 FFVFQDATDSRIVAKNPVVEMDGDEMTRII---WENIKEKLIFPYVK 69
+ ++ ++ I +NP + E+ + W +K+K +
Sbjct: 11 YALWLNSARESIKRENP--GIKVTEVAKRGGELWRAMKDKS--EWEA 53
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding
protein; NMR {Drosophila melanogaster}
Length = 73
Score = 25.3 bits (56), Expect = 6.5
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 26 FFVFQDATDSRIVAKNPVVEMDGDEMTRII---WENIKEKLIFPYVK 69
F ++ + T I +NP + E+ + W+ +K+K +
Sbjct: 11 FMLWLNDTRESIKRENP--GIKVTEIAKKGGEMWKELKDKS--KWED 53
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics,
synthetase; 1.60A {Burkholderia pseudomallei} PDB:
3gwe_A
Length = 365
Score = 27.2 bits (61), Expect = 7.8
Identities = 8/40 (20%), Positives = 11/40 (27%), Gaps = 11/40 (27%)
Query: 153 ATEDQVTVDAAV-----AIKKHNVG------IKCATITPD 181
A + D A + VG + T PD
Sbjct: 74 AAPRETAADLAYEAARKLFAQGAVGADQVDFVILCTQAPD 113
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 26.8 bits (60), Expect = 8.4
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 11/42 (26%)
Query: 151 RDATEDQVTVDAAV-----AIKKHNVG------IKCATITPD 181
R +D DAA A+ N+G + +++ D
Sbjct: 60 RLWDQDVQASDAATQAARKALIDANIGIEKIGLLINTSVSRD 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.420
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,713,863
Number of extensions: 286342
Number of successful extensions: 745
Number of sequences better than 10.0: 1
Number of HSP's gapped: 738
Number of HSP's successfully gapped: 34
Length of query: 303
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 210
Effective length of database: 4,105,140
Effective search space: 862079400
Effective search space used: 862079400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.3 bits)