RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12302
         (303 letters)



>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig
           (Sus scrofa) [TaxId: 9823]}
          Length = 413

 Score =  146 bits (369), Expect = 1e-41
 Identities = 109/169 (64%), Positives = 135/169 (79%), Gaps = 1/169 (0%)

Query: 131 QIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKL 190
           ++I   +DV+  Y+DLGLP+RD T DQVT+D+A+A +K++V +KCATITPDEARV+EFKL
Sbjct: 30  KLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKL 89

Query: 191 KKMWLSPNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDK 250
           KKMW SPNGTIRNILGGTVFREPIICKNIP++VPGWT  I IGRHAHGDQYKATD +VD+
Sbjct: 90  KKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDR 149

Query: 251 PGKVELVYTDNQG-KVQTFKVFEFKTPGVALAMYNTTESIESFAHSSFQ 298
            G  ++V+T   G   + ++V+ F   GV + MYNT ESI  FAHS FQ
Sbjct: 150 AGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQ 198



 Score = 67.9 bits (165), Expect = 2e-13
 Identities = 27/37 (72%), Positives = 29/37 (78%)

Query: 34 DSRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKV 70
          D RI    PVVEMDGDEMTRIIW+ IKEKLI P+V V
Sbjct: 2  DQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDV 38


>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 414

 Score =  143 bits (361), Expect = 2e-40
 Identities = 106/164 (64%), Positives = 127/164 (77%), Gaps = 2/164 (1%)

Query: 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLS 196
           ++++   YDLG+ +RDAT DQVT DAA AIKKHNVG+KCATITPDE RV+EFKLK+MW S
Sbjct: 35  VELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDEKRVEEFKLKQMWKS 94

Query: 197 PNGTIRNILGGTVFREPIICKNIPKIVPGWTNSIVIGRHAHGDQYKATDLIVDKPGKVEL 256
           PNGTIRNILGGTVFRE IICKNIP++V GW   I+IGRHA+GDQY+ATD +V  PGKVE+
Sbjct: 95  PNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEI 154

Query: 257 VYTDNQGKVQT--FKVFEFKTPGVALAMYNTTESIESFAHSSFQ 298
            YT + G  +         +  GVA+ MYN  +SIE FAHSSFQ
Sbjct: 155 TYTPSDGTQKVTYLVHNFEEGGGVAMGMYNQDKSIEDFAHSSFQ 198



 Score = 66.8 bits (162), Expect = 4e-13
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 35 SRIVAKNPVVEMDGDEMTRIIWENIKEKLIFPYVKV 70
          S+ ++   VVEM GDEMTRIIWE IKEKLIFPYV++
Sbjct: 2  SKKISGGSVVEMQGDEMTRIIWELIKEKLIFPYVEL 37


>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus
           subtilis [TaxId: 1423]}
          Length = 423

 Score = 47.8 bits (113), Expect = 8e-07
 Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 12/160 (7%)

Query: 137 IDVECLYYDLGLPHRDATEDQVTVDAAVAIKKHNVGIKCATITPDEARVKEFKLKKMWLS 196
             +       G    + T + +  +    I+++ + IK    TP    ++         S
Sbjct: 54  KKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPLTTPVGGGIR---------S 104

Query: 197 PNGTIRNILGGTVFREPIIC-KNIPKIVPGWTNS-IVIGRHAHGDQYKATDLIVDKPGKV 254
            N  +R  L   V   P+     +P  V    ++ +VI R    D Y   +         
Sbjct: 105 LNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYAKGSEEVQ 164

Query: 255 ELV-YTDNQGKVQTFKVFEFKTPGVALAMYNTTESIESFA 293
           +L+ +  N+  V   +  E    G+       T  +   A
Sbjct: 165 KLISFLQNELNVNKIRFPETSGIGIKPVSEEGTSRLVRAA 204


>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 71

 Score = 26.0 bits (57), Expect = 1.8
 Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 3/47 (6%)

Query: 26 FFVFQDATDSRIVAKNPVVEMDGDEMTRII---WENIKEKLIFPYVK 69
          +  F          K+P   ++  E ++     W+ +  K    +  
Sbjct: 9  YAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 55


>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus
           thermophilus [TaxId: 274]}
          Length = 106

 Score = 24.7 bits (54), Expect = 7.4
 Identities = 4/23 (17%), Positives = 6/23 (26%)

Query: 245 DLIVDKPGKVELVYTDNQGKVQT 267
               +K G   +   D  G    
Sbjct: 77  KFKAEKAGTFTIKLKDTDGDTGE 99


>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase
           5, UBP5 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 113

 Score = 24.5 bits (53), Expect = 8.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 168 KHNVGIKCATITPDEARVKEFKLKKMWLSPN 198
            + + +K  TITPD A V  +    M L P+
Sbjct: 69  GYPLAVKLGTITPDGADVYSYDEDDMVLDPS 99


>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae
           [TaxId: 108330]}
          Length = 299

 Score = 25.2 bits (54), Expect = 10.0
 Identities = 14/139 (10%), Positives = 33/139 (23%), Gaps = 4/139 (2%)

Query: 46  MDGDEMTRIIWENIKEKLIFPYVKVCMSIIIFNKFQAFLLFPEKSEEMNLEWIKIPCLQC 105
              +E+   + E     +                   F   P      N         Q 
Sbjct: 126 ETVEEVREFVKEMYYGPIGRRSFSPWTFSPGIADASLFPNDPYNVATSN--NHVCIIPQI 183

Query: 106 SDKAKMFFLSSSLKHGFMYFMASRIQIISNIIDVECLYYDLGLPHRDATEDQVTVDAAVA 165
                +  + +      ++ +            ++      G+PH    E       + A
Sbjct: 184 ESVKGVENVDAIAAMPEIHGLMFGPGDYMIDAGLDLNGALSGVPHPTFVE--AMTKFSTA 241

Query: 166 IKKHNVGIKCATITPDEAR 184
            +++ V I    ++ D   
Sbjct: 242 AQRNGVPIFGGALSVDMVP 260


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0509    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,178,996
Number of extensions: 56804
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 13
Length of query: 303
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,240,546
Effective search space: 270439028
Effective search space used: 270439028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.7 bits)